Citrus Sinensis ID: 047492
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 806 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GZA6 | 879 | Pentatricopeptide repeat- | yes | no | 0.931 | 0.854 | 0.466 | 0.0 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.777 | 0.719 | 0.246 | 5e-47 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.709 | 0.758 | 0.239 | 2e-38 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.559 | 0.754 | 0.253 | 2e-36 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.624 | 0.795 | 0.245 | 4e-36 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.625 | 0.8 | 0.240 | 2e-34 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.591 | 0.748 | 0.234 | 3e-34 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.482 | 0.646 | 0.270 | 4e-34 | |
| Q0WPZ6 | 874 | Pentatricopeptide repeat- | no | no | 0.708 | 0.653 | 0.235 | 6e-34 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.621 | 0.796 | 0.244 | 1e-33 |
| >sp|Q8GZA6|PP113_ARATH Pentatricopeptide repeat-containing protein At1g71210 OS=Arabidopsis thaliana GN=At1g71210 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/778 (46%), Positives = 511/778 (65%), Gaps = 27/778 (3%)
Query: 28 KIFQIL--STHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDW 85
+IF IL ++D +D A LS L +RLTE F L VL++ + D+L CLKFFDW
Sbjct: 82 RIFDILRAPSNDGDDRAFYLH----LSNLRLRLTEKFVLDVLSHTRY--DILCCLKFFDW 135
Query: 86 AGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLE-NYKKDRYYHQVRFNDTLVMGYALA 144
A RQP FHHTRATFHAIFK+L AKL LM+DFL+ + + H +R D LV+GYA+A
Sbjct: 136 AARQPGFHHTRATFHAIFKILRGAKLVTLMIDFLDRSVGFESCRHSLRLCDALVVGYAVA 195
Query: 145 GKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRT 204
G+ DIAL FG MRF+G+DLD + YHVLLNALVE+ CFD+ V+ QIS+RGF VT +
Sbjct: 196 GRTDIALQHFGNMRFRGLDLDSFGYHVLLNALVEEKCFDSFDVIFDQISVRGFVCAVTHS 255
Query: 205 IMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDR 264
I++K CKQ K+DEA +Y + L+ G +GI+VDALC +F++A KLL++ K
Sbjct: 256 ILVKKFCKQGKLDEAEDYLRALLPNDPAGCGSGLGILVDALCSKRKFQEATKLLDEIK-L 314
Query: 265 DDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLM 324
V +++AY++W+R L++AG L+ +FL+ + LEG EVFR+N +V +LLKEN L
Sbjct: 315 VGTVNMDRAYNIWIRALIKAGFLNNPADFLQKISPLEGCELEVFRYNSMVFQLLKENNLD 374
Query: 325 EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384
V+D+ +M +SP+ TMN LCFFCKAG VD A+ELY+SRSE G +P + YNYLI
Sbjct: 375 GVYDILTEMMVRGVSPNKKTMNAALCFFCKAGFVDEALELYRSRSEIGFAPTAMSYNYLI 434
Query: 385 NSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIK 444
++LC + S +AY+VLK +ID G F G KT S L +ALC GK + ++LVI A ER++
Sbjct: 435 HTLCANESVEQAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKPDMARELVIAAAERDLL 494
Query: 445 LRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARL 504
+ + K ISALC KVE +I+ ++ S + LI+G R DIAA+L
Sbjct: 495 PKRIAGCKIISALCDVGKVEDALMINELFNKSGVDTSFKMFTSLIYGSITLMRGDIAAKL 554
Query: 505 LVEMEENGHKPTRALHRAVIRCLCNMETPAKQFL-QLLNMQLSHQETNFQIYNFFIDGAG 563
++ M+E G+ PTR+L+R VI+C+C ME+ K F LL QLS E Q YN FI+GAG
Sbjct: 555 IIRMQEKGYTPTRSLYRNVIQCVCEMESGEKNFFTTLLKFQLSLWEHKVQAYNLFIEGAG 614
Query: 564 HVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLK--------------RKNGIPRK-L 608
+P LAR VY++M R G+ P + SNILMLQSYLK R+ G +K L
Sbjct: 615 FAGKPKLARLVYDMMDRDGITPTVASNILMLQSYLKNEKIADALHFFHDLREQGKTKKRL 674
Query: 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLE 668
Y +IVGLCKA K + A F+ EM+ G+ PS+ECYE I+ LC+ + YD VG++N
Sbjct: 675 YQVMIVGLCKANKLDDAMHFLEEMKGEGLQPSIECYEVNIQKLCNEEKYDEAVGLVNEFR 734
Query: 669 GHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQ 728
GR++T+FIGN LL +A+K++ +YEAW R+R + ++ ++ LG+LIG+FSG I +
Sbjct: 735 KSGRRITAFIGNVLLHNAMKSKGVYEAWTRMRN-IEDKIPEMKSLGELIGLFSGRIDMEV 793
Query: 729 DIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILK 786
+++ L ++IE+C+PLD YTYN+LLR + +++ + A E+ R+ R+GY P++ T IL+
Sbjct: 794 ELKRLDEVIEKCYPLDMYTYNMLLRMIVMNQAEDAYEMVERIARRGYVPNERTDMILE 851
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 169/685 (24%), Positives = 283/685 (41%), Gaps = 58/685 (8%)
Query: 88 RQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKP 147
R+ F + + + + +M+ + ++ Y V TL+ G+A G+
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219
Query: 148 DIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFEND-VTRTIM 206
D AL L +M+ +D D Y+V +++ + G D +I G + D VT T M
Sbjct: 220 DSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSM 279
Query: 207 LKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDD 266
+ LCK ++DEAVE F+ L R + ++ +F++A LLE + +
Sbjct: 280 IGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGS 339
Query: 267 VV----------------KLEKA-----------------YDVWLRNLVRAGRLDLALEF 293
+ K+++A Y++ + L RAG+LD A E
Sbjct: 340 IPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFE- 398
Query: 294 LKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFC 353
L+ G P V N +V RL K +L E +F +M +PD +T +++
Sbjct: 399 LRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLG 458
Query: 354 KAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKK 413
K G VD A ++Y+ + N IVY LI + G + +++ K+ I+ P +
Sbjct: 459 KVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQ 518
Query: 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSEL 473
L+ D + + G+ E+ + + R +Y I L KA Y + +
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM 578
Query: 474 SRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETP 533
V Y +I GF K + + A +LL EM+ G +PT + +VI L ++
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL 638
Query: 534 AKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQL------ 587
+ ++ + E N IY+ IDG G V R D A + E + + GL P L
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSL 698
Query: 588 ----------GSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGM 637
++ QS + K + Y LI GLCK K N A+ F +EM+ GM
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGM 758
Query: 638 YPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL------HALKTRD 691
PS Y +I L N + + + +G S N ++ A+
Sbjct: 759 KPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFS 818
Query: 692 LYEAWIRLRGMLINEQSKISLLGQL 716
L+E R RG+ I+ ++ + LL L
Sbjct: 819 LFEE-TRRRGLPIHNKTCVVLLDTL 842
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 155/646 (23%), Positives = 262/646 (40%), Gaps = 74/646 (11%)
Query: 50 ALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCA 109
ALS ++L +S Q D + L+ F+ A ++P+F A + I L +
Sbjct: 45 ALSSTDVKLLDSLRSQ--------PDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRS 96
Query: 110 KLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ-GMDLDDYA 168
M LE+ K R L+ YA D L + M + G+ D +
Sbjct: 97 GSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHF 156
Query: 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDV-TRTIMLKCLCK--------------- 212
Y+ +LN LV+ V + ++S+ G + DV T +++K LC+
Sbjct: 157 YNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMP 216
Query: 213 --------------------QKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFE 252
+ +D A+ +Q+V S + ++V CK R E
Sbjct: 217 SYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVE 276
Query: 253 QAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNF 312
A +++ ++D + ++ + L +AG + A+E + EGY P+V+ +N
Sbjct: 277 DALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ-EGYDPDVYTYNS 335
Query: 313 LVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372
++S L K + E ++ M SP+ VT NT++ CK V+ A EL + + G
Sbjct: 336 VISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395
Query: 373 LSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQ-- 430
+ P+ +N LI LC + A E+ + G P + T ++L D+LC GK ++
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL 455
Query: 431 --MKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQL 488
+K + + R++ +TY+ I CKANK I E+ + TY L
Sbjct: 456 NMLKQMELSGCARSV----ITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511
Query: 489 IHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQ 548
I G KS R + AA+L+ +M G KP + + +++ C K + M +
Sbjct: 512 IDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571
Query: 549 ETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKL 608
E + Y I G R ++A + +Q G+ N P
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI------------------NLTPHA- 612
Query: 609 YNTLIVGLCKAMKANLAWGFMREM-RHNGMYPSMECYEELIKLLCS 653
YN +I GL + K A REM N P Y + + LC+
Sbjct: 613 YNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/466 (25%), Positives = 206/466 (44%), Gaps = 15/466 (3%)
Query: 118 FLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALV 177
FLEN + TL+ G+ GK A + + G D Y+V+++
Sbjct: 124 FLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYC 183
Query: 178 EQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFM 237
+ G + V ++S+ + VT +L+ LC K+ +A+E +++ R+C +
Sbjct: 184 KAGEINNALSVLDRMSVS--PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ-RDCYPDVI 240
Query: 238 I-GIVVDALCKNSRFEQAGKLLEDFKDR---DDVVKLEKAYDVWLRNLVRAGRLDLALEF 293
I+++A C++S A KLL++ +DR DVV Y+V + + + GRLD A++F
Sbjct: 241 TYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVV----TYNVLVNGICKEGRLDEAIKF 296
Query: 294 LKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFC 353
L S G P V N ++ + R M+ L DM SP VT N ++ F C
Sbjct: 297 LNDMPS-SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355
Query: 354 KAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKK 413
+ G++ AI++ + + G PN + YN L++ C + A E L+ + G +P
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415
Query: 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSEL 473
T + + ALC+DGK E +++ + +TY+ I L KA K + E+
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 475
Query: 474 SRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETP 533
+ TY L+ G ++ + D A + E E G +P +++ LC
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQT 535
Query: 534 AKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQ 579
+ L+ M + N Y I+G + +A+ EL+
Sbjct: 536 DRAIDFLVFMINRGCKPNETSYTILIEGLAY---EGMAKEALELLN 578
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (388), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 134/545 (24%), Positives = 236/545 (43%), Gaps = 42/545 (7%)
Query: 116 VDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA 175
VD + K R + + + L+ A K ++ + L +M+ G+ D Y Y + +N
Sbjct: 68 VDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINC 127
Query: 176 LVEQGCFD-AVAVVSKQISMRGFEND-VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233
+ A+AV++K + + G+E D VT + +L C K+I +AV Q+V
Sbjct: 128 FCRRSQLSLALAVLAKMMKL-GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186
Query: 234 SGFMIGIVVDALCKNSRFEQAGKLLEDFKDR---DDVVKLEKAYDVWLRNLVRAGRLDLA 290
F ++ L +++ +A L++ R D+V Y + L + G +DLA
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV----TYGTVVNGLCKRGDIDLA 242
Query: 291 LEFLK--SKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV 348
L LK K +E +V +N ++ L K + + +LF +M I PD T +++
Sbjct: 243 LSLLKKMEKGKIEA---DVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSL 299
Query: 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAY----EVLKNSI 404
+ C G A L E ++PN + ++ LI++ +G EA E++K SI
Sbjct: 300 ISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 359
Query: 405 DHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVE 464
D +F T S L + C + ++ K + + ++ VTY I CKA +VE
Sbjct: 360 DPDIF----TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVE 415
Query: 465 VGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVI 524
G + E+S+ V + TY LIHGF ++ D A + +M G P + ++
Sbjct: 416 EGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 475
Query: 525 RCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV 584
LC AK + +Q S E + YN I+G + + ++ + G+
Sbjct: 476 DGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVS 535
Query: 585 PQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECY 644
P + + YNT+I G C+ A +++M+ +G P+ Y
Sbjct: 536 PNVIA-------------------YNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTY 576
Query: 645 EELIK 649
LI+
Sbjct: 577 NTLIR 581
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 131/544 (24%), Positives = 233/544 (42%), Gaps = 40/544 (7%)
Query: 116 VDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA 175
V+ + K R + + L+ A K D+ + L +M+ G+ + Y Y +L+N
Sbjct: 66 VNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINC 125
Query: 176 LVEQGCFD-AVAVVSKQISMRGFEND-VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233
+ A+AV++K + + G+E D VT +L C +I +AV Q+V
Sbjct: 126 FCRRSQLSLALAVLAKMMKL-GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184
Query: 234 SGFMIGIVVDALCKNSRFEQAGKLLEDFKDR---DDVVKLEKAYDVWLRNLVRAGRLDLA 290
F ++ L +++R +A L++ + D+V Y + + L + G +DLA
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLV----TYGIVVNGLCKRGDIDLA 240
Query: 291 LEFLKSKNSLEGYV-PEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVL 349
L LK +G + P V +N ++ L + + +LF +M I P+ VT N+++
Sbjct: 241 LSLLKKME--QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298
Query: 350 CFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAY----EVLKNSID 405
C G A L E ++PN + ++ LI++ +G EA E++K SID
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358
Query: 406 HGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEV 465
+F T S L + C + ++ K + + ++ VTY+ I CKA +V+
Sbjct: 359 PDIF----TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDE 414
Query: 466 GYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIR 525
G + E+S+ V + TY LIHGF ++ D A + +M +G P + ++
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLD 474
Query: 526 CLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVP 585
LCN + +Q S E + YN I+G + + ++ + G+ P
Sbjct: 475 GLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534
Query: 586 QLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYE 645
+ + Y T++ G C+ A REM+ G P Y
Sbjct: 535 NVVT-------------------YTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYN 575
Query: 646 ELIK 649
LI+
Sbjct: 576 TLIR 579
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 225/507 (44%), Gaps = 30/507 (5%)
Query: 148 DIALHLFGKMRFQGMDLDDYAYHVLLNALVE--QGCFDAVAVVSKQISMRGFENDVTRTI 205
D+ L L +M +G+ + Y +++N + C A + + K I + N +T +
Sbjct: 105 DLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCL-AFSAMGKIIKLGYEPNTITFST 163
Query: 206 MLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLE---DFK 262
++ LC + ++ EA+E ++V I +V+ LC + + +A L++ ++
Sbjct: 164 LINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG 223
Query: 263 DRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENR 322
+ + V Y L + ++G+ LA+E L+ K + +++ ++ L K
Sbjct: 224 CQPNAV----TYGPVLNVMCKSGQTALAMELLR-KMEERNIKLDAVKYSIIIDGLCKHGS 278
Query: 323 LMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNY 382
L F+LF +M+ I+ + +T N ++ FC AG D +L + + ++PN + ++
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338
Query: 383 LINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442
LI+S +G EA E+ K I G+ P T + L D C++ ++ +V + +
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398
Query: 443 IKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502
T++ I+ CKAN+++ G + ++S VA TY LI GF + + ++A
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458
Query: 503 RLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGA 562
L EM P ++ ++ LC+ K ++ S E + IYN I G
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 518
Query: 563 GHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKA 622
+ + D A ++ + G+ P + K YN +I GLCK
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKPGV-------------------KTYNIMIGGLCKKGPL 559
Query: 623 NLAWGFMREMRHNGMYPSMECYEELIK 649
+ A R+M +G P Y LI+
Sbjct: 560 SEAELLFRKMEEDGHAPDGWTYNILIR 586
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 180/392 (45%), Gaps = 3/392 (0%)
Query: 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISM 194
+TL+ G L GK A+ L +M G D Y+ ++N + G + +++
Sbjct: 162 NTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE 221
Query: 195 RGFENDV-TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQ 253
R + DV T + ++ LC+ ID A+ F+++ + S +V LCK ++
Sbjct: 222 RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWND 281
Query: 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFL 313
LL+D R+ +V ++V L V+ G+L A E K + G P + +N L
Sbjct: 282 GALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEANELYKEMIT-RGISPNIITYNTL 339
Query: 314 VSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL 373
+ +NRL E ++ M + SPD VT +++ +C VD ++++++ S+ GL
Sbjct: 340 MDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL 399
Query: 374 SPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKD 433
N + Y+ L+ C G A E+ + + HG+ P T IL D LC +GK E+ +
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459
Query: 434 LVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFN 493
+ + + L V Y I +CK KVE + + L + TY +I G
Sbjct: 460 IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLC 519
Query: 494 KSNRADIAARLLVEMEENGHKPTRALHRAVIR 525
K A LL +MEE+G+ P + +IR
Sbjct: 520 KKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 551
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 152/645 (23%), Positives = 258/645 (40%), Gaps = 74/645 (11%)
Query: 137 LVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRG 196
LV GY AG D L L M G+ + Y+ ++++ +G D + +++ G
Sbjct: 188 LVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEG 247
Query: 197 FEND-VTRTIMLKCLCKQKKIDEAVEYFQQL----VSGRECVSGFMIGIVVDALCKNSRF 251
D VT + LCK+ K+ +A F + G + +++ CK
Sbjct: 248 LVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLL 307
Query: 252 EQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFN 311
E A L E ++ DD+ L+ +Y++WL+ LVR G+ A LK +G P ++ +N
Sbjct: 308 EDAKTLFESIRENDDLASLQ-SYNIWLQGLVRHGKFIEAETVLKQMTD-KGIGPSIYSYN 365
Query: 312 FLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF 371
L+ L K L + + MK + PD VT +L +C G VD A L +
Sbjct: 366 ILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRN 425
Query: 372 GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQM 431
PN N L++SL G EA E+L+ + G T +I+ D LC G+ ++
Sbjct: 426 NCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKA 485
Query: 432 KDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHG 491
++V + +++ +AL +G L+ L N + TY L++G
Sbjct: 486 IEIV-----KGMRVHGS------AALGNLGNSYIG-LVDDSLIENNCLPDLITYSTLLNG 533
Query: 492 FNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETN 551
K+ R A L EM +P + I C + F L +M+ +
Sbjct: 534 LCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKS 593
Query: 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNT 611
+ YN I G G + + + M+ G+ P + + YNT
Sbjct: 594 LETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICT-------------------YNT 634
Query: 612 LIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHG 671
I LC+ K A + EM + P++ ++ LI+ C ++DM V
Sbjct: 635 AIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVF------- 687
Query: 672 RQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIE 731
S G L++L +L A GQL+ + E
Sbjct: 688 ETAVSICGQKEGLYSLMFNELLAA------------------GQLL----------KATE 719
Query: 732 GLQKMIEQCFPLDTYTYNILLRRL-SVSEIDHACELFNRMRRKGY 775
L+ ++++ F L T+ Y L+ L E++ A + ++M +GY
Sbjct: 720 LLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGY 764
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 133/544 (24%), Positives = 232/544 (42%), Gaps = 43/544 (7%)
Query: 116 VDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA 175
VD + K R + + + L+ A K ++ + L +M+ G+ D Y Y + +N
Sbjct: 68 VDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINC 127
Query: 176 LVEQGCFD-AVAVVSKQISMRGFEND-VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233
+ A+AV++K + + G+E D VT + +L C K+I +AV Q+V
Sbjct: 128 FCRRSQLSLALAVLAKMMKL-GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186
Query: 234 SGFMIGIVVDALCKNSRFEQAGKLLEDFKDR---DDVVKLEKAYDVWLRNLVRAGRLDLA 290
F ++ L +++ +A L++ R D+V Y + L + G +DLA
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV----TYGTVVNGLCKRGDIDLA 242
Query: 291 LEFLKSKNSLEG--YVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV 348
L L N +E V FN ++ L K + DLF +M+ I P+ VT N++
Sbjct: 243 LNLL---NKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSL 299
Query: 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGL 408
+ C G A L + E ++PN + +N LI++ +G EA ++ + I +
Sbjct: 300 INCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSI 359
Query: 409 FPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYL 468
P T ++L + C + ++ K + F + ++ TY+ I+ CK +VE G
Sbjct: 360 DPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVE 419
Query: 469 IHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLC 528
+ E+S+ V + TY +I GF ++ D A + +M N + ++ LC
Sbjct: 420 LFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLC 479
Query: 529 NMETPAKQFLQLLNMQLSHQETNFQIYNFFIDG---AGHVKRPDLARAVYELMQRSGLVP 585
+ + +Q S E N IYN I+G AG V ++L + P
Sbjct: 480 SYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGE------AWDLFCSLSIKP 533
Query: 586 QLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYE 645
+ + YNT+I GLC A R+M+ +G P+ Y
Sbjct: 534 DVVT-------------------YNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYN 574
Query: 646 ELIK 649
LI+
Sbjct: 575 TLIR 578
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 806 | ||||||
| 147778212 | 1173 | hypothetical protein VITISV_028175 [Viti | 0.954 | 0.655 | 0.608 | 0.0 | |
| 225464799 | 881 | PREDICTED: pentatricopeptide repeat-cont | 0.954 | 0.872 | 0.608 | 0.0 | |
| 255583659 | 895 | pentatricopeptide repeat-containing prot | 0.956 | 0.861 | 0.565 | 0.0 | |
| 449454117 | 913 | PREDICTED: pentatricopeptide repeat-cont | 0.960 | 0.847 | 0.554 | 0.0 | |
| 449530778 | 889 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.960 | 0.870 | 0.553 | 0.0 | |
| 224129790 | 881 | predicted protein [Populus trichocarpa] | 0.939 | 0.859 | 0.493 | 0.0 | |
| 356499287 | 872 | PREDICTED: pentatricopeptide repeat-cont | 0.954 | 0.881 | 0.472 | 0.0 | |
| 356553665 | 868 | PREDICTED: pentatricopeptide repeat-cont | 0.968 | 0.899 | 0.468 | 0.0 | |
| 357493739 | 978 | Pentatricopeptide repeat-containing prot | 0.950 | 0.783 | 0.469 | 0.0 | |
| 297841889 | 868 | hypothetical protein ARALYDRAFT_894959 [ | 0.934 | 0.867 | 0.470 | 0.0 |
| >gi|147778212|emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/796 (60%), Positives = 609/796 (76%), Gaps = 27/796 (3%)
Query: 28 KIFQILSTHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWAG 87
+IF+ILS +D AD AL L + L+E F L VL +G DVLSCLKFFDWAG
Sbjct: 82 QIFRILSDLPPDD------ADAALGRLRLPLSERFVLDVLAHGS---DVLSCLKFFDWAG 132
Query: 88 RQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKP 147
RQP FHHTRATFHA FK+L AKL LM+DFL+NY + RY H+VRF DTLVMGYA+AGKP
Sbjct: 133 RQPGFHHTRATFHATFKILARAKLMSLMLDFLQNYTELRYVHRVRFYDTLVMGYAVAGKP 192
Query: 148 DIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207
+IAL LF KMRFQG+DLD +AYHVLLNALVE+ CFDA VV +QI MRG +N++T +I++
Sbjct: 193 EIALQLFAKMRFQGLDLDSFAYHVLLNALVEENCFDAFRVVVEQIRMRGLDNEITHSIIV 252
Query: 208 KCLCKQKKIDEAVEYFQQLV-SGRECVSG-FMIGIVVDALCKNSRFEQAGKLLEDFKDRD 265
K CKQ ++DEA + +QLV SGR +SG M+G++VDALCK RF +AG+L+E+F+
Sbjct: 253 KNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVGLIVDALCKRKRFGEAGRLVEEFQG-S 311
Query: 266 DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLME 325
+V +E+AY VW+R+LVRAGRLD ALEFL SK EGYVPEV +N L+ RLL+ENRL E
Sbjct: 312 GMVSVEQAYGVWIRDLVRAGRLDGALEFLHSKKESEGYVPEVCGYNILICRLLRENRLEE 371
Query: 326 VFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN 385
V DL M+M+EGQI PD VTMN VLCFFCKAGMVDVA+ELY SR+EFGLSPN + YNYLIN
Sbjct: 372 VLDLLMEMREGQILPDKVTMNAVLCFFCKAGMVDVALELYNSRAEFGLSPNSMAYNYLIN 431
Query: 386 SLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKL 445
+LCGDGST EAY VLK+S++ G FPGKKT SILADALC++GK ++MK+LV+ AL+RNI
Sbjct: 432 TLCGDGSTDEAYHVLKHSLEQGYFPGKKTFSILADALCQEGKLDKMKELVLVALDRNIMP 491
Query: 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLL 505
TYDKFI ALCKA +V+ GYLI EL+++NKVAS+NTY +I GFN NRADIAARLL
Sbjct: 492 SASTYDKFILALCKARRVDDGYLIQGELNKINKVASKNTYFNMIRGFNILNRADIAARLL 551
Query: 506 VEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHV 565
+E++E GH PTR+L RAVI LC+M+ KQFL+LL +QLSHQE N Q+YNFFIDGAGH
Sbjct: 552 IELQEKGHTPTRSLFRAVICRLCDMDNAEKQFLKLLELQLSHQEPNCQVYNFFIDGAGHA 611
Query: 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLK---------------RKNGIPRKLYN 610
K+P+LAR V+E+M RSG+VP L S+ILMLQSYLK ++ + RKL N
Sbjct: 612 KKPELAREVFEMMVRSGIVPNLSSDILMLQSYLKNERISDALNFFSDLQKRRKVGRKLCN 671
Query: 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH 670
T++VGLCKA K ++A ++E+R G+ PS+ECYEEL+K+LC K YD+VV +++ LE
Sbjct: 672 TMVVGLCKANKVDIALEILKEIREKGVTPSLECYEELVKVLCKNKRYDVVVNLIDDLERV 731
Query: 671 GRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI 730
GR V+SFIGN LLLH+LKT +L+E W+ + S +LGQLIG FSGCI V+QD
Sbjct: 732 GRHVSSFIGNVLLLHSLKTPELFETWVHAKDAHNEISSPNLILGQLIGEFSGCIGVNQDF 791
Query: 731 EGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILKCGLY 790
L+++++QCFPLD YTYN+LLRRL+ S++D A ELFNR+ +KGYEP++WT+DIL GL+
Sbjct: 792 NYLEEVMQQCFPLDLYTYNMLLRRLTRSDMDLALELFNRICQKGYEPNRWTYDILVHGLF 851
Query: 791 NCLRTDEAERRLEEMF 806
RT EA + +EEMF
Sbjct: 852 KHGRTSEANKWVEEMF 867
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464799|ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 973 bits (2514), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/796 (60%), Positives = 610/796 (76%), Gaps = 27/796 (3%)
Query: 28 KIFQILSTHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWAG 87
+IF+ILS +D AD AL L + L+E F L VL +G DVLSCLKFFDWAG
Sbjct: 82 QIFRILSDLPPDD------ADAALGRLRLPLSERFVLDVLAHGS---DVLSCLKFFDWAG 132
Query: 88 RQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKP 147
RQP FHHTRATFHA FK+L AKL LM+DFL+NY + RY H+VRF DTLVMGYA+AGKP
Sbjct: 133 RQPGFHHTRATFHATFKILARAKLMSLMLDFLQNYTELRYVHRVRFYDTLVMGYAVAGKP 192
Query: 148 DIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207
+IAL LF KMRFQG+DLD +AYHVLLNALVE+ CFDA VV +QI MRG +N++T +I++
Sbjct: 193 EIALQLFAKMRFQGLDLDSFAYHVLLNALVEENCFDAFRVVVEQIRMRGLDNEITHSIIV 252
Query: 208 KCLCKQKKIDEAVEYFQQLV-SGRECVSG-FMIGIVVDALCKNSRFEQAGKLLEDFKDRD 265
K CKQ ++DEA + +QLV SGR +SG M+G++VDALCK RF +AG+L+E+F+
Sbjct: 253 KNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVGLIVDALCKRKRFGEAGRLVEEFQG-S 311
Query: 266 DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLME 325
+V +E+AY VW+R+LVRAGRLD ALEFL SK EGYVPEV +N L+ RLL+ENRL E
Sbjct: 312 GMVSVEQAYGVWIRDLVRAGRLDGALEFLHSKKESEGYVPEVCGYNILICRLLRENRLEE 371
Query: 326 VFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN 385
V DL M+M+EGQI PD VTMN VLCFFCKAGMVDVA+ELY SR+EFGLSPN + YNYLIN
Sbjct: 372 VLDLLMEMREGQILPDKVTMNAVLCFFCKAGMVDVALELYNSRAEFGLSPNSMAYNYLIN 431
Query: 386 SLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKL 445
+LCGDGST EAY VLK+S++ G FPGKKT SILADALC++GK ++MK+LV+ AL+RNI
Sbjct: 432 TLCGDGSTDEAYHVLKHSLEQGYFPGKKTFSILADALCQEGKLDKMKELVLVALDRNIMP 491
Query: 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLL 505
TYDKFI ALCKA +V+ GYLI EL+++NKVAS+NTY +I GFN NRADIAARLL
Sbjct: 492 SASTYDKFILALCKARRVDDGYLIQGELNKINKVASKNTYFNMIRGFNILNRADIAARLL 551
Query: 506 VEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHV 565
+E++E GH PTR+L RAVI LC+M+ KQFL+LL +QLSHQE N Q+YNFFIDGAGH
Sbjct: 552 IELQEKGHTPTRSLFRAVICRLCDMDNAEKQFLKLLELQLSHQEPNCQVYNFFIDGAGHA 611
Query: 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLK---------------RKNGIPRKLYN 610
K+P+LAR V+E+M RSG+VP L S+ILMLQSYLK ++ + RKL N
Sbjct: 612 KKPELAREVFEMMVRSGIVPNLSSDILMLQSYLKNERISDALNFFSDLQKRRKVGRKLCN 671
Query: 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH 670
T++VGLCKA K ++A ++E+R G+ PS+ECYEEL+K+LC+ K YD+VV +++ LE
Sbjct: 672 TMVVGLCKANKVDIALEILKEIREKGVTPSLECYEELVKVLCTNKRYDVVVNLIDDLERV 731
Query: 671 GRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI 730
GR V+SFIGN LLLH+LKT +L+E W+ + S +LGQLIG FSGCI V+QD
Sbjct: 732 GRHVSSFIGNVLLLHSLKTPELFETWVHAKDAHNEISSPNLILGQLIGEFSGCIGVNQDF 791
Query: 731 EGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILKCGLY 790
L+++++QCFPLD YTYN+LLRRL+ S++D A ELFNR+ +KGYEP++WT+DIL GL+
Sbjct: 792 NYLEEVMQQCFPLDLYTYNMLLRRLTRSDMDLALELFNRICQKGYEPNRWTYDILVHGLF 851
Query: 791 NCLRTDEAERRLEEMF 806
RT EA + +EEMF
Sbjct: 852 KHGRTSEANKWVEEMF 867
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583659|ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527693|gb|EEF29801.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/797 (56%), Positives = 582/797 (73%), Gaps = 26/797 (3%)
Query: 28 KIFQILSTHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWAG 87
++F+ILS D+ D + ALS+LG+RLTES L VL+YG KDVLSCLKFFDWAG
Sbjct: 93 RVFEILSNQDEVD-------ELALSQLGLRLTESLVLDVLHYGNSKKDVLSCLKFFDWAG 145
Query: 88 RQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQ---VRFNDTLVMGYALA 144
RQ F+HTRATFHAIFK+L AKL LM+DFL+NY K R+ + F TL+MGY++A
Sbjct: 146 RQSGFYHTRATFHAIFKILSKAKLMQLMLDFLDNYMKHRFANHKLGYGFYSTLIMGYSVA 205
Query: 145 GKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRT 204
GKP +AL LFGKMRF G DLD +AYH+LLN+LVE+ CFDAV ++KQIS+RGFE+ +T +
Sbjct: 206 GKPQVALQLFGKMRFLGRDLDAFAYHILLNSLVEECCFDAVDDIAKQISIRGFESHITHS 265
Query: 205 IMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDR 264
I++K CKQ+ +DEA Y ++++ E +G +GI+V A C+ +FE+AG+L+E+F++
Sbjct: 266 IVVKSFCKQRMLDEAEAYLRRMILQGESGNGAAVGILVGAFCQKGQFEKAGQLIEEFREL 325
Query: 265 DDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLM 324
VV L AY VWLRNLV+ G+LD AL+F + K +LE YVPE+F +N L+ RLLKENRL
Sbjct: 326 R-VVPLYPAYGVWLRNLVQKGKLDGALDFFQQKKTLESYVPEIFHYNALLCRLLKENRLT 384
Query: 325 EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384
E DL M+M E SPD VTMN L FFCKAGMVDVA++LY +SEFGLSP+ + NYLI
Sbjct: 385 EACDLLMEMMEDGFSPDKVTMNAALSFFCKAGMVDVALDLYNCKSEFGLSPSTMTCNYLI 444
Query: 385 NSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIK 444
NSLC +G+ +AY VLK+S +HG FPGK+ S+L DAL R+GK E M +L +ALERN
Sbjct: 445 NSLCREGNVDDAYHVLKSSSEHGYFPGKRAFSMLTDALHREGKVEMMNELFFWALERNFI 504
Query: 445 LRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARL 504
D YDKFISALCKA ++E GYLIH EL+R N+VA ++TY LIHGFNK NR DIAARL
Sbjct: 505 PSDSMYDKFISALCKARRLEDGYLIHGELNRFNRVAKKSTYSNLIHGFNKFNRGDIAARL 564
Query: 505 LVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGH 564
L+EM++ GH P R L RAVIR LC M+ P +F L+MQLS ++ N QIYNFFIDGAGH
Sbjct: 565 LIEMQDKGHLPARTLFRAVIRSLCEMDDPETRFFNYLDMQLSRRDPNCQIYNFFIDGAGH 624
Query: 565 VKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLK---------------RKNGIPRKLY 609
K+PD+AR V+E+MQRSG+ P +NILMLQSYLK ++ I RKLY
Sbjct: 625 AKKPDIARKVFEMMQRSGIEPNQSTNILMLQSYLKSERISDALNFFDAVGQRRKIGRKLY 684
Query: 610 NTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEG 669
NT++VGLCK K + A F EM+ NGM PS+ECYE LI LLCS K Y + ++ LE
Sbjct: 685 NTMVVGLCKVNKVDSALSFFLEMQSNGMVPSVECYEVLIMLLCSNKRYSTAITLITDLEK 744
Query: 670 HGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQD 729
GR+VTSFIGN LLLH+LK+ +LY+AW+++R + + +LGQ+IG F+G +K+SQ
Sbjct: 745 FGRRVTSFIGNILLLHSLKSDELYDAWLQVREVQNETSLNLLILGQIIGAFAGRLKLSQQ 804
Query: 730 IEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILKCGL 789
I+ L+++IEQCFPLD YTYN+L+RRLS+S IDHA ELF+R+ +KGYEP+ WT+DIL GL
Sbjct: 805 IDNLEEVIEQCFPLDLYTYNMLMRRLSMSNIDHARELFDRICQKGYEPNHWTYDILVHGL 864
Query: 790 YNCLRTDEAERRLEEMF 806
+ R EA R ++EMF
Sbjct: 865 FKNGRIGEARRWVDEMF 881
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454117|ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/795 (55%), Positives = 558/795 (70%), Gaps = 21/795 (2%)
Query: 28 KIFQIL-STHDDEDSASR-FAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDW 85
KIFQIL DD++ R AAD ALS LG+RL ESF L VL +G +KDVLSCLKFFDW
Sbjct: 99 KIFQILRGARDDQEIPYRPSAADLALSRLGLRLNESFVLDVLRFG--SKDVLSCLKFFDW 156
Query: 86 AGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAG 145
AGRQ F HTRATF+AI K+L AKL LM DFLEN + + YH F + LVMGYA AG
Sbjct: 157 AGRQERFFHTRATFNAILKILSKAKLVSLMFDFLENCVQHKLYHMPCFYNILVMGYAAAG 216
Query: 146 KPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTI 205
KP ALHLFGKMRFQG+DLD ++YHVLLN+LVE+ CFDAV V+ KQI++RGF N++T +
Sbjct: 217 KPIFALHLFGKMRFQGLDLDPFSYHVLLNSLVEENCFDAVNVIIKQITLRGFVNEITHYL 276
Query: 206 MLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRD 265
MLK CKQ ++DEA + LV + ++G M+ ++V A C++ FE+A KL+E F+D
Sbjct: 277 MLKSFCKQNQLDEAETFLHDLVDSGKKLNGRMLDLLVGAFCQSGNFERAWKLVEWFRDLQ 336
Query: 266 DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLME 325
+V +E Y VW+ L+RAG+L+ AL+FL S Y+P+VFR+N L+ RLL+ENRL E
Sbjct: 337 -IVSMEHVYGVWITELIRAGKLESALQFLNSSKLDGRYIPDVFRYNMLIHRLLRENRLQE 395
Query: 326 VFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN 385
VFDL +M + ISPD VTM+ +CF CKAGMV+VA+ELY S EFG+SPN + YNYLIN
Sbjct: 396 VFDLLTEMMDQHISPDKVTMDAAMCFLCKAGMVEVALELYNSNFEFGISPNTMAYNYLIN 455
Query: 386 SLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKL 445
+LC DGST EAY +LK SI G FPGKKT SILA ALCR+GK ++MK+LVIFALERN
Sbjct: 456 ALCRDGSTDEAYRILKCSIYEGYFPGKKTFSILASALCREGKLDKMKELVIFALERNCMP 515
Query: 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLL 505
D TYDKFI ALC+A +VE GYLIH EL+R+N VA+ +TY LI GF KS R DIAARLL
Sbjct: 516 NDSTYDKFIYALCRARRVEDGYLIHCELNRINVVATRSTYFVLIEGFIKSGRGDIAARLL 575
Query: 506 VEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHV 565
+EM E GH P R L R+VI CL ME KQF LL +QLS QE N ++YN FI AG
Sbjct: 576 IEMLEKGHNPPRGLFRSVILCLIEMENMEKQFFNLLELQLSCQEPNSEVYNNFIYAAGRA 635
Query: 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSY---------------LKRKNGIPRKLYN 610
K+P+LA VY +M R+G+ P L S+IL+L+ Y L + I RK+ N
Sbjct: 636 KKPELANEVYHMMLRNGIQPNLSSDILLLRGYLYSERISDALIFLSNLSQTRTIGRKISN 695
Query: 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH 670
++VGLCKA K NLA+ F + +R G PS+ECYEEL K C + YD VV ++N L+
Sbjct: 696 VVVVGLCKANKTNLAFDFWKHLRDKGTVPSIECYEELAKHFCQNERYDAVVNLLNDLDKV 755
Query: 671 GRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI 730
GR +TSF+GN LL +LKT+ LY+AW+ R + E S+ S+LG LI FSG I+VSQ I
Sbjct: 756 GRPLTSFLGNVLLYSSLKTQKLYKAWVNSRVGQV-ETSQSSMLGLLIKAFSGHIRVSQSI 814
Query: 731 EGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILKCGLY 790
+ L++ I +CFPLD YTYN+LLR L S+++ A ELF+R+ KGY P++WT+DIL GL+
Sbjct: 815 KNLEEAIAKCFPLDIYTYNLLLRTLITSDMERAFELFDRLCEKGYVPNKWTYDILVHGLF 874
Query: 791 NCLRTDEAERRLEEM 805
RT EA+R LE M
Sbjct: 875 KQGRTVEAKRLLEIM 889
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530778|ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g71210-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/795 (55%), Positives = 557/795 (70%), Gaps = 21/795 (2%)
Query: 28 KIFQIL-STHDDEDSASR-FAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDW 85
KIFQIL DD++ R AAD ALS LG+RL ESF L VL +G +KDVLSCLKFFDW
Sbjct: 75 KIFQILRGARDDQEIPYRPSAADLALSRLGLRLNESFVLDVLRFG--SKDVLSCLKFFDW 132
Query: 86 AGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAG 145
AGRQ F HTRATF+AI K+L AKL LM DFLEN + + YH F + LVMGYA AG
Sbjct: 133 AGRQERFFHTRATFNAILKILSKAKLVSLMFDFLENCVQHKLYHMPCFYNILVMGYAAAG 192
Query: 146 KPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTI 205
KP ALHLFGKMRFQG+DLD ++YHVLLN+LVE+ CFDAV V+ KQI++RGF N++T +
Sbjct: 193 KPIFALHLFGKMRFQGLDLDPFSYHVLLNSLVEENCFDAVNVIIKQITLRGFVNEITHYL 252
Query: 206 MLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRD 265
MLK CKQ ++DEA + LV + ++G M+ ++V A C++ FE+A KL+E F+D
Sbjct: 253 MLKSFCKQNQLDEAETFLHDLVDSGKKLNGRMLDLLVGAFCQSGNFERAWKLVEWFRDLQ 312
Query: 266 DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLME 325
+V +E Y VW+ L+RAG+L+ AL+FL S Y+P+VFR+N L+ RLL+ENRL E
Sbjct: 313 -IVSMEHVYGVWITELIRAGKLESALQFLNSSKLDGRYIPDVFRYNMLIHRLLRENRLQE 371
Query: 326 VFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN 385
VFDL +M + ISPD VTM+ +CF CKAGMV+VA+ELY S EFG+SPN + YNYLIN
Sbjct: 372 VFDLLTEMMDQHISPDKVTMDAAMCFLCKAGMVEVALELYNSNFEFGISPNTMAYNYLIN 431
Query: 386 SLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKL 445
+LC DGST EAY +LK SI G FPGKK SILA ALCR+GK ++MK+LVIFALERN
Sbjct: 432 ALCRDGSTDEAYRILKCSIYEGYFPGKKXFSILASALCREGKLDKMKELVIFALERNCMP 491
Query: 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLL 505
D TYDKFI ALC+A +VE GYLIH EL+R+N VA+ +TY LI GF KS R DIAARLL
Sbjct: 492 NDSTYDKFIYALCRARRVEDGYLIHCELNRINVVATRSTYFVLIEGFIKSGRGDIAARLL 551
Query: 506 VEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHV 565
+EM E GH P R L R+VI CL ME KQF LL +QLS QE N ++YN FI AG
Sbjct: 552 IEMLEKGHNPPRGLFRSVILCLIEMENMEKQFFNLLELQLSCQEPNSEVYNNFIYAAGRA 611
Query: 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSY---------------LKRKNGIPRKLYN 610
K+P+LA VY +M R+G+ P L S+IL+L+ Y L + I RK+ N
Sbjct: 612 KKPELANEVYHMMLRNGIQPNLSSDILLLRGYLYSERISDALIFLSNLSQTRTIGRKISN 671
Query: 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH 670
++VGLCKA K NLA+ F + +R G PS+ECYEEL K C + YD VV ++N L+
Sbjct: 672 VVVVGLCKANKTNLAFDFWKHLRDKGTVPSIECYEELAKHFCQNERYDAVVNLLNDLDKV 731
Query: 671 GRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI 730
GR +TSF+GN LL +LKT+ LY+AW+ R + E S+ S+LG LI FSG I+VSQ I
Sbjct: 732 GRPLTSFLGNVLLYSSLKTQKLYKAWVNSRVGQV-ETSQSSMLGLLIKAFSGHIRVSQSI 790
Query: 731 EGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILKCGLY 790
+ L++ I +CFPLD YTYN+LLR L S+++ A ELF+R+ KGY P++WT+DIL GL+
Sbjct: 791 KNLEEAIAKCFPLDIYTYNLLLRTLITSDMERAFELFDRLCEKGYVPNKWTYDILVHGLF 850
Query: 791 NCLRTDEAERRLEEM 805
RT EA+R LE M
Sbjct: 851 KQGRTVEAKRLLEIM 865
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129790|ref|XP_002328803.1| predicted protein [Populus trichocarpa] gi|222839101|gb|EEE77452.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/804 (49%), Positives = 549/804 (68%), Gaps = 47/804 (5%)
Query: 28 KIFQILSTHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWAG 87
+IF + H ++ A ALS+L + L ESF L VL YGK ++ SC+KFFDWAG
Sbjct: 91 RIFVTIQKHGEDKEA----LGLALSQLRLPLNESFVLDVLAYGKNRNEIYSCVKFFDWAG 146
Query: 88 RQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKK--DRY-YHQVRFNDTLVMGYALA 144
+ F HTR TFHA FK+L +K +M+DFLE K D Y +H +RF LVMGYA+A
Sbjct: 147 HKGGFFHTRVTFHAFFKILTESKGMSVMLDFLEVCKGTGDVYVHHNMRFQTVLVMGYAVA 206
Query: 145 GKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRT 204
GKPD+AL + G+MRFQG+DLD ++YHVLLN+L+E F+ + KQIS+RGFE VTR
Sbjct: 207 GKPDVALQMLGRMRFQGLDLDTFSYHVLLNSLIEGVFFEGFEAIFKQISLRGFEGVVTRV 266
Query: 205 IMLKCLCKQKKIDEAVEYFQQLVS-GR--ECVSGFMIG------IVVDALCKNSRFEQAG 255
+ +K LCKQK +DEA YF+ LV+ G+ +C G M G ++VD C+N F +AG
Sbjct: 267 LKMKYLCKQKLLDEAEAYFRGLVNEGKVDKCRRGEMFGYAHALSVLVDGFCQNGLFVKAG 326
Query: 256 KLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVS 315
+L+E+ + ++V +E AY +WL+NLV AG +D A +F+KSK SLEG
Sbjct: 327 ELIEEI-SKLELVPMESAYGLWLKNLVHAGEIDAAFKFMKSKKSLEG------------- 372
Query: 316 RLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSP 375
LLK+NRL + DL ++MKE QIS + VTMN LCFFCK GMV+VA +LYKS+ EFG SP
Sbjct: 373 -LLKDNRLEDACDLLIEMKENQISANTVTMNAALCFFCKVGMVEVAHKLYKSKLEFGFSP 431
Query: 376 NGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLV 435
N + YNYLINSLCG GS+ EAY +LKNSI G FPG + S+LADALCR GK + + +LV
Sbjct: 432 NTMAYNYLINSLCGVGSSGEAYSLLKNSIKQGYFPGTRAFSVLADALCRQGKLDMVMELV 491
Query: 436 IFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKS 495
+ AL +N +L D TY++ ISALC+A + E GY++H E +R N+VA+ TY QLIHGF+KS
Sbjct: 492 LLALSKNFRLSDSTYERVISALCRAGRFEDGYVMHGEFNRRNRVATVATYRQLIHGFSKS 551
Query: 496 NRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIY 555
NR +A+RLL+EM++ GH+PTR + RAV RCLC+ME P F +LL MQL + N ++Y
Sbjct: 552 NRGHVASRLLIEMQDKGHQPTRKMFRAVFRCLCDMENPEMHFFKLLEMQLYRHKFNTKVY 611
Query: 556 NFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLK--------------RK 601
NFFID AG K+P+LAR V+E+MQR+G+ P +GS++ +L+++L+
Sbjct: 612 NFFIDEAGRSKKPELAREVFEMMQRNGIEPNVGSHVFILKAFLRNGRISDALNFLKATHD 671
Query: 602 NGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVV 661
+ + KLY ++VGLC+ + +LA F++ M+ + PSMECYE +++LLCSTKNYDMVV
Sbjct: 672 SKMDEKLYRAMVVGLCEVKRTDLALDFLKAMQSKELVPSMECYEAVVRLLCSTKNYDMVV 731
Query: 662 GVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS 721
++N L+ R++TS IGN LLLH+LK+ +LYE+W+R R + + S +S LG LI FS
Sbjct: 732 KIINDLKKCQRKLTSLIGNVLLLHSLKSNELYESWVRSRDVQNDTSSDLSNLGLLIRAFS 791
Query: 722 GCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWT 781
G ++VS +E L+ +IEQCFP D YT N+LLR L + ++D A + FNR+R KG+EP++WT
Sbjct: 792 GHLEVS--LEYLEGLIEQCFPPDIYTCNMLLRMLCMRDLDRAQKYFNRLRDKGFEPNRWT 849
Query: 782 FDILKCGLYNCLRTDEAERRLEEM 805
FDI+ G + R + ++EM
Sbjct: 850 FDIMAHGHFKHGRQVQGRLWVDEM 873
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499287|ref|XP_003518473.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/794 (47%), Positives = 524/794 (65%), Gaps = 25/794 (3%)
Query: 28 KIFQILSTHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWAG 87
+I QILS+ E+ S ALS L + L+ES L+VL +G +++L CLKFFDWAG
Sbjct: 87 RIHQILSSPAGEEDFS-----AALSALRLPLSESLVLRVLRHGAARRNILPCLKFFDWAG 141
Query: 88 RQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKP 147
QPHFHHTRATF AIF++L A L PL++DFL+++++ ++H+VRF+D LV+GYA+AGKP
Sbjct: 142 HQPHFHHTRATFVAIFQILARADLKPLVLDFLDSFRRRIFHHRVRFHDILVVGYAIAGKP 201
Query: 148 DIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207
ALH FG+MRF G+DLD +AYHVLL+ALVE+ +A ++ +QI RG+EN +T I++
Sbjct: 202 QNALHAFGRMRFVGLDLDSFAYHVLLDALVEKNYLNAFDIIVRQIRSRGYENHMTNVIVV 261
Query: 208 KCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDV 267
K LCK+++++EA + L+ E + G + +V ALC++ RFE+A +L++ F +
Sbjct: 262 KHLCKERRLEEAEGFLNGLMCRGEELKGPEVSFLVGALCESYRFERAFELVKQFGS-SGL 320
Query: 268 VKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVF 327
V L+ AY VW++ LVR GR+D ALEF K EGY P R+N L+ RLL+ENRL EV+
Sbjct: 321 VPLDHAYGVWIKGLVRGGRVDEALEFFSQKKDSEGYFPATVRYNVLICRLLRENRLREVY 380
Query: 328 DLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSL 387
DL +DM E I PD VTMN VLCFFCK GM DVA+ELY SRS+ LSPN + YLI +L
Sbjct: 381 DLLVDMSESCIPPDAVTMNAVLCFFCKVGMADVALELYNSRSDLELSPNHLACKYLILTL 440
Query: 388 CGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRD 447
C DG EA+ VL++++D FP +T LA ALCR+ K ++MK+L+ A+ RNI
Sbjct: 441 CWDGGAKEAFNVLRSTVDRSYFPDGQTFCTLASALCRERKIDEMKELLYLAVGRNIVPPT 500
Query: 448 VTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVE 507
YDK+ISALC+A +VE GYL+H EL VA++ +Y+++I GF KS R D AARLLVE
Sbjct: 501 SMYDKYISALCRAGRVEDGYLVHGEL---KSVAAKTSYVKMIKGFVKSGRGDTAARLLVE 557
Query: 508 MEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKR 567
M GH P L R VI L M+ +F LL M L+ + + Q YNFF+DGAGH +
Sbjct: 558 MNGKGHTPIPRLCRYVICSLLEMDNSRGRFFNLLEM-LTRCQHSCQTYNFFLDGAGHAMK 616
Query: 568 PDLARAVYELMQRSGLVPQLGSNILMLQSYL---------------KRKNGIPRKLYNTL 612
P+LAR V+ELMQR+G+ P + S ILM+ YL +R+ +KLY L
Sbjct: 617 PELAREVFELMQRNGITPNMCSLILMMNGYLISGRISDALNFFNDVQRRGLATKKLYVAL 676
Query: 613 IVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGR 672
I GLCK+ K +++ + M G+ PS+ECYE L++ LCS + Y + ++N + GR
Sbjct: 677 ITGLCKSNKVDISREYFFRMLRVGLNPSLECYELLVQKLCSLQRYSEAMHIINVSQKMGR 736
Query: 673 QVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEG 732
V+SFIGN LL H+L + LY+ + LRG+ S S L +IG FSG ++VS I
Sbjct: 737 PVSSFIGNVLLYHSLISPQLYDTCVNLRGVEEGVFSGNSTLCLMIGAFSGRLRVSHYITD 796
Query: 733 LQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNC 792
L+++IE+CFP + +TYN+LL++++ S++D A LF RM ++GY+P+ WT+DI+ G
Sbjct: 797 LERLIEKCFPPNIFTYNLLLKQVARSDMDKARLLFARMCQRGYQPNSWTYDIMVRGFSIH 856
Query: 793 LRTDEAERRLEEMF 806
R DEA R L+EMF
Sbjct: 857 GRNDEARRWLKEMF 870
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553665|ref|XP_003545174.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/809 (46%), Positives = 524/809 (64%), Gaps = 28/809 (3%)
Query: 15 STAHAQAWPAAKL--KIFQILSTHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKK 72
++A Q P L +I QILS+ DDED F+A ALS L + L+E L+VL +G
Sbjct: 62 ASARQQQLPFDPLLNRIHQILSSPDDED----FSA--ALSALRLPLSERLVLRVLCHGAA 115
Query: 73 TKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVR 132
+D+L CLKFFDWAGRQPHFHHTRATF +IFK+L A L PL+++FL+ +++ ++H+ R
Sbjct: 116 RRDILPCLKFFDWAGRQPHFHHTRATFVSIFKILARADLKPLVLEFLDAFRRRIFHHRGR 175
Query: 133 FNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQI 192
F+D LV+GYA+AGKP ALH F +MRF G+DLD +AYHVLL ALVE+ +A ++ +QI
Sbjct: 176 FHDILVVGYAIAGKPQNALHAFARMRFHGLDLDSFAYHVLLEALVEKNYLNAFDIIMRQI 235
Query: 193 SMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFE 252
RG+EN +T I++K LCK+++++EA ++ L+ E + G + ++DALC++ RFE
Sbjct: 236 RARGYENHMTNVIVVKHLCKERRLEEAEDFLNGLMCRGEELKGPEVSFLIDALCESYRFE 295
Query: 253 QAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNF 312
+A +L++ F +V L+ AY VW++ LVR GR+D ALEF K EGY P R+N
Sbjct: 296 RAVELVKQFGS-SGLVPLDHAYGVWIKGLVRGGRVDEALEFFSQKKDSEGYFPATVRYNV 354
Query: 313 LVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372
L+ RLL+ENR EV+DL +DM E I PD VTMN VLCFFCK GM DVA ELY SRS+FG
Sbjct: 355 LICRLLQENRFREVYDLLVDMNESCIPPDVVTMNAVLCFFCKVGMADVAFELYHSRSDFG 414
Query: 373 LSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMK 432
LS N + YLI +LC DG EA++VL++S FP +T LA ALCR+ K ++MK
Sbjct: 415 LSLNHLACKYLILTLCWDGGAEEAFKVLRSSAQRSYFPDGRTFCTLASALCREHKIDEMK 474
Query: 433 DLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGF 492
+L+ A+ +N YDK+I ALC+A +VE GYL+H EL VA+ +Y+++I F
Sbjct: 475 ELLYLAVGKNFVPPTSMYDKYILALCRAGRVEDGYLVHGEL---KSVAARTSYVKMIKSF 531
Query: 493 NKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNF 552
KS R DIAARLLVEM+ GHK R R VI L M+ +F LL M L+ + +
Sbjct: 532 VKSGRGDIAARLLVEMKGKGHKLIRPWCRDVICRLLEMDNSRGRFFNLLEM-LTRYQHSC 590
Query: 553 QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYL-------------- 598
Q YNFF+DGAGH +P+LAR V+ELMQR+G+ P L S ILML YL
Sbjct: 591 QTYNFFLDGAGHAMKPELAREVFELMQRNGIKPNLSSLILMLHVYLLSGRISDALNFFNG 650
Query: 599 -KRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNY 657
+R+ +KLY LI GLCK K +++ + M G+ PS+ECYE L++ LCS + Y
Sbjct: 651 VRRQGLATKKLYVALITGLCKFNKIDISREYFFSMLRVGLNPSLECYELLVQKLCSLQKY 710
Query: 658 DMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLI 717
+ ++N + GR V+SFIGN LL H+L + LY+ LRG S S L +I
Sbjct: 711 SEAIHIINVSQKMGRPVSSFIGNVLLYHSLISPQLYDTCNYLRGAEEGVFSGNSTLCWMI 770
Query: 718 GVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEP 777
G FSG ++VS I L++++E+CFP + +TYN+LL++++ S++D A LF RM ++GY+P
Sbjct: 771 GAFSGRLRVSHYIADLERLVERCFPPNIFTYNLLLKQVAKSDMDKARLLFARMCQRGYQP 830
Query: 778 DQWTFDILKCGLYNCLRTDEAERRLEEMF 806
+ WT+DI+ G R EA R LEEMF
Sbjct: 831 NCWTYDIMVRGFSIHGRKHEARRWLEEMF 859
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493739|ref|XP_003617158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355518493|gb|AET00117.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/797 (46%), Positives = 527/797 (66%), Gaps = 31/797 (3%)
Query: 27 LKIFQILSTHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWA 86
L+I Q LS+ +D F+A + L I LT L+VL++ D+ SCLKFFDWA
Sbjct: 83 LRIHQFLSSKND------FSA--LFTSLNIPLTTPLVLRVLHHVSYNNDIQSCLKFFDWA 134
Query: 87 GRQPHFHHTRATFHAIFKLLHC-AKLTPLMVDFLENYKK-DRYYHQVRFNDTLVMGYALA 144
GRQP + HTRATF AIF++L A L P++ + LE ++K + +YH RF DTLV+GYA+A
Sbjct: 135 GRQPRYTHTRATFTAIFRMLTTRAHLMPMLFEILERFEKHELFYHNARFYDTLVVGYAIA 194
Query: 145 GKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRT 204
GKP+IALH+FG+MRFQG+DLD +AYHVLLN+L E F++ V+ QI +RG+ VT T
Sbjct: 195 GKPEIALHVFGRMRFQGLDLDAFAYHVLLNSLAENEYFNSFDVILNQIRIRGYATRVTDT 254
Query: 205 IMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDR 264
I++K LC+Q + DEA EY ++ + + F + ++V LC+ +FE+A KL+++F +
Sbjct: 255 IVVKRLCEQGRFDEAEEYVNGMLGSGKKLRDFEVSMLVGLLCERKKFERAVKLVKEFGN- 313
Query: 265 DDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLM 324
+V LE AY V ++ LV+ GRLD ALEF + EG VP ++R+N L+ RLL+ENRL
Sbjct: 314 TGLVPLEHAYGVCIKGLVKGGRLDDALEFFRQTRDTEGSVPHLYRYNMLICRLLRENRLR 373
Query: 325 EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384
EV+DL MDM E I PD +TMN VLCFFCK GMV+VA++LY+SRS+FGL+PN I Y YLI
Sbjct: 374 EVYDLLMDMYESSIPPDQITMNVVLCFFCKIGMVNVALQLYESRSQFGLNPNTIAYKYLI 433
Query: 385 NSLCGDGSTHEAYEVLKNSI-DHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNI 443
+LC DGS EAY V K I + LFP ++T + LA+ALCR+ K ++MK+L+ A ER
Sbjct: 434 LNLCWDGSVKEAYSVFKRFIGNDKLFPDRETFTTLANALCRECKVDEMKELMDLAKEREF 493
Query: 444 KLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAAR 503
L VT KFISALC+A ++E GY E ++ ++ Y ++I GF KSN+ +IAAR
Sbjct: 494 TLSPVTNAKFISALCQAGRLEDGY---DEHGKLENATAKLYYDKMIEGFIKSNKGEIAAR 550
Query: 504 LLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAG 563
LLVEM+E + TR RAVI L +M+ P + +LL+ L+ + + +I+NFFI GAG
Sbjct: 551 LLVEMKEKNLRLTRFSCRAVICRLLDMDNPITRVTKLLD-SLTQGKPDTKIFNFFIVGAG 609
Query: 564 HVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLK---------------RKNGIPRKL 608
H DLAR VYELM R+ +VP L S L+L SYL+ R + +KL
Sbjct: 610 HANNTDLAREVYELMPRNNIVPTLLSQRLVLNSYLRNGKIIDALNFFNSLRRLGVVSKKL 669
Query: 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLE 668
Y ++++GLCK+ K ++A F+ EM + G+ P +EC+E L+ LCS + Y + ++
Sbjct: 670 YCSMVIGLCKSNKVDIAHDFLFEMLNAGVNPDIECFESLVWKLCSLRRYHKAINLVQVYM 729
Query: 669 GHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQ 728
GR++TSF+GNTLL H+ + D+Y + LRG E S IS L +IG FSGC+ V++
Sbjct: 730 KGGRRLTSFLGNTLLWHSSLSPDVYGILVHLRGAEEGENSPISTLSFVIGAFSGCLSVNR 789
Query: 729 DIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILKCG 788
IE L+K+I CFPLDT+TYN LLRR++ +++ ACELFNRM ++G +P+ WT+D + G
Sbjct: 790 SIEELEKLIAMCFPLDTHTYNQLLRRVASYDMNQACELFNRMCQRGCKPNGWTYDFMVRG 849
Query: 789 LYNCLRTDEAERRLEEM 805
N R DEA++ +EEM
Sbjct: 850 FLNHGRNDEAKQWVEEM 866
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841889|ref|XP_002888826.1| hypothetical protein ARALYDRAFT_894959 [Arabidopsis lyrata subsp. lyrata] gi|297334667|gb|EFH65085.1| hypothetical protein ARALYDRAFT_894959 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/776 (47%), Positives = 507/776 (65%), Gaps = 23/776 (2%)
Query: 28 KIFQILSTHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWAG 87
+IF IL ++ A F LS L +RLTE F L VL + + D+LSCLKFFDWA
Sbjct: 71 RIFDILRAPSNDGDARAFYLH--LSNLRLRLTEKFVLDVLTHTRY--DILSCLKFFDWAA 126
Query: 88 RQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLE-NYKKDRYYHQVRFNDTLVMGYALAGK 146
RQP FHHTRATFHAIFK+L AKL LM+DFL+ + + Y H +R D LV+GYA+AG+
Sbjct: 127 RQPGFHHTRATFHAIFKILRGAKLVTLMIDFLDRSVAFEGYRHSLRLCDALVVGYAVAGR 186
Query: 147 PDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIM 206
DIAL FG MRF+G+DLD + YHVLLNALVE+ CFD V V+ QIS+RGF VT +I+
Sbjct: 187 TDIALQHFGNMRFRGLDLDSFGYHVLLNALVEEKCFDTVDVIFDQISVRGFVCAVTHSIL 246
Query: 207 LKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDD 266
+K LCKQ K+DEA Y + L+ G +GI+VDALC +F++A KLL++ K
Sbjct: 247 VKKLCKQGKLDEAEAYLRALLPNDPAGCGSGLGILVDALCSKRKFQEATKLLDEIKVLG- 305
Query: 267 VVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEV 326
V +++AY++W+R L+ AG L+ ++FL+ + LEG EVFR+N +V +LLKEN L V
Sbjct: 306 TVNMDRAYNIWIRALIGAGFLNNTVDFLQKISPLEGCELEVFRYNSMVFQLLKENDLNGV 365
Query: 327 FDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINS 386
+D+ +M +SP+ TMN LCFFCKAG VD A+ELY+SRSE G +P YNYLI++
Sbjct: 366 YDILTEMLVRGVSPNKKTMNAALCFFCKAGFVDEALELYRSRSEIGFAPTATSYNYLIHT 425
Query: 387 LCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLR 446
LC + S +AY+VLK ++D G F G KT S L +ALC GK + K+LVI A ER++ +
Sbjct: 426 LCANESVEQAYDVLKGAMDRGHFLGGKTFSTLTNALCWKGKPDMAKELVIAAAERDLLPK 485
Query: 447 DVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLV 506
+ K ISALC KVE +I+ ++ S + LI+G R DIAA+L++
Sbjct: 486 RIAGCKIISALCDIGKVEDALMINELFNKSGVDTSFKMFTSLIYGSITLMRGDIAAKLII 545
Query: 507 EMEENGHKPTRALHRAVIRCLCNMETPAKQFL-QLLNMQLSHQETNFQIYNFFIDGAGHV 565
M+E G+ PTR+L+R VI+C+C ME+ K F LL QLS E Q YN FI+GAG
Sbjct: 546 RMQEKGYTPTRSLYRNVIQCVCEMESGEKNFFTTLLKFQLSLWEHKVQAYNLFIEGAGFA 605
Query: 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLK---------------RKNGIPRKLYN 610
+P LAR VY++M R G+ P L SNILMLQSYLK K ++LY
Sbjct: 606 GKPKLARLVYDMMDRDGITPTLDSNILMLQSYLKNEKIADALHFFHDLREKGKTKKRLYQ 665
Query: 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH 670
+IVGLCKA + + A F+ EM+ G+ PS+ECYE I+ LC+ + YD VG++N
Sbjct: 666 VMIVGLCKANRLDDAMHFLEEMKGEGLRPSIECYEVNIQKLCNEEKYDEAVGLVNEFRKS 725
Query: 671 GRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI 730
GR++T+FIGN LL +A+K++ +YEAW R+R + ++ ++ LG+LIGVFSG I + ++
Sbjct: 726 GRRITAFIGNVLLHNAMKSKGVYEAWTRMRDVE-DKIPEMKSLGELIGVFSGRIDMEIEL 784
Query: 731 EGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILK 786
+ L ++I +C+PLD YTYN+LLR + +++ + A E+ R+ R+GYEP++ T IL+
Sbjct: 785 KRLDEVIVKCYPLDMYTYNMLLRMIVMNQAEDAYEMVERIARRGYEPNERTDRILE 840
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 806 | ||||||
| TAIR|locus:2026316 | 879 | AT1G71210 [Arabidopsis thalian | 0.934 | 0.856 | 0.465 | 1.3e-178 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.532 | 0.717 | 0.262 | 1.5e-36 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.699 | 0.647 | 0.247 | 4.8e-35 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.476 | 0.610 | 0.301 | 7.1e-35 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.795 | 0.700 | 0.213 | 5.2e-33 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.501 | 0.535 | 0.260 | 8.3e-33 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.640 | 0.820 | 0.254 | 1.1e-32 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.526 | 0.718 | 0.279 | 2.6e-32 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.475 | 0.607 | 0.293 | 3.1e-32 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.591 | 0.757 | 0.241 | 6.7e-32 |
| TAIR|locus:2026316 AT1G71210 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1734 (615.5 bits), Expect = 1.3e-178, P = 1.3e-178
Identities = 361/776 (46%), Positives = 508/776 (65%)
Query: 28 KIFQILSTHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWAG 87
+IF IL ++ F LS L +RLTE F L VL++ + D+L CLKFFDWA
Sbjct: 82 RIFDILRAPSNDGDDRAFYLH--LSNLRLRLTEKFVLDVLSHTRY--DILCCLKFFDWAA 137
Query: 88 RQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLE-NYKKDRYYHQVRFNDTLVMGYALAGK 146
RQP FHHTRATFHAIFK+L AKL LM+DFL+ + + H +R D LV+GYA+AG+
Sbjct: 138 RQPGFHHTRATFHAIFKILRGAKLVTLMIDFLDRSVGFESCRHSLRLCDALVVGYAVAGR 197
Query: 147 PDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIM 206
DIAL FG MRF+G+DLD + YHVLLNALVE+ CFD+ V+ QIS+RGF VT +I+
Sbjct: 198 TDIALQHFGNMRFRGLDLDSFGYHVLLNALVEEKCFDSFDVIFDQISVRGFVCAVTHSIL 257
Query: 207 LKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDD 266
+K CKQ K+DEA +Y + L+ G +GI+VDALC +F++A KLL++ K
Sbjct: 258 VKKFCKQGKLDEAEDYLRALLPNDPAGCGSGLGILVDALCSKRKFQEATKLLDEIK-LVG 316
Query: 267 VVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEV 326
V +++AY++W+R L++AG L+ +FL+ + LEG EVFR+N +V +LLKEN L V
Sbjct: 317 TVNMDRAYNIWIRALIKAGFLNNPADFLQKISPLEGCELEVFRYNSMVFQLLKENNLDGV 376
Query: 327 FDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINS 386
+D+ +M +SP+ TMN LCFFCKAG VD A+ELY+SRSE G +P + YNYLI++
Sbjct: 377 YDILTEMMVRGVSPNKKTMNAALCFFCKAGFVDEALELYRSRSEIGFAPTAMSYNYLIHT 436
Query: 387 LCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLR 446
LC + S +AY+VLK +ID G F G KT S L +ALC GK + ++LVI A ER++ +
Sbjct: 437 LCANESVEQAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKPDMARELVIAAAERDLLPK 496
Query: 447 DVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLV 506
+ K ISALC KVE +I+ ++ S + LI+G R DIAA+L++
Sbjct: 497 RIAGCKIISALCDVGKVEDALMINELFNKSGVDTSFKMFTSLIYGSITLMRGDIAAKLII 556
Query: 507 EMEENGHKPTRALHRAVIRCLCNMETPAKQFLQ-LLNMQLSHQETNFQIYNFFIDGAGHV 565
M+E G+ PTR+L+R VI+C+C ME+ K F LL QLS E Q YN FI+GAG
Sbjct: 557 RMQEKGYTPTRSLYRNVIQCVCEMESGEKNFFTTLLKFQLSLWEHKVQAYNLFIEGAGFA 616
Query: 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLK--------------RKNGIPRK-LYN 610
+P LAR VY++M R G+ P + SNILMLQSYLK R+ G +K LY
Sbjct: 617 GKPKLARLVYDMMDRDGITPTVASNILMLQSYLKNEKIADALHFFHDLREQGKTKKRLYQ 676
Query: 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH 670
+IVGLCKA K + A F+ EM+ G+ PS+ECYE I+ LC+ + YD VG++N
Sbjct: 677 VMIVGLCKANKLDDAMHFLEEMKGEGLQPSIECYEVNIQKLCNEEKYDEAVGLVNEFRKS 736
Query: 671 GRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI 730
GR++T+FIGN LL +A+K++ +YEAW R+R + ++ ++ LG+LIG+FSG I + ++
Sbjct: 737 GRRITAFIGNVLLHNAMKSKGVYEAWTRMRN-IEDKIPEMKSLGELIGLFSGRIDMEVEL 795
Query: 731 EGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILK 786
+ L ++IE+C+PLD YTYN+LLR + +++ + A E+ R+ R+GY P++ T IL+
Sbjct: 796 KRLDEVIEKCYPLDMYTYNMLLRMIVMNQAEDAYEMVERIARRGYVPNERTDMILE 851
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 1.5e-36, P = 1.5e-36
Identities = 118/450 (26%), Positives = 207/450 (46%)
Query: 136 TLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMR 195
TL+ G+ GK A + + G D Y+V+++ + G + V ++S+
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS 201
Query: 196 GFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMI-GIVVDALCKNSRFEQA 254
+ VT +L+ LC K+ +A+E +++ R+C + I+++A C++S A
Sbjct: 202 --PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ-RDCYPDVITYTILIEATCRDSGVGHA 258
Query: 255 GKLLEDFKDRD---DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFN 311
KLL++ +DR DVV Y+V + + + GRLD A++FL S G P V N
Sbjct: 259 MKLLDEMRDRGCTPDVV----TYNVLVNGICKEGRLDEAIKFLNDMPS-SGCQPNVITHN 313
Query: 312 FLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF 371
++ + R M+ L DM SP VT N ++ F C+ G++ AI++ + +
Sbjct: 314 IILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQH 373
Query: 372 GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQM 431
G PN + YN L++ C + A E L+ + G +P T + + ALC+DGK E
Sbjct: 374 GCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDA 433
Query: 432 KDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHG 491
+++ + +TY+ I L KA K + E+ + TY L+ G
Sbjct: 434 VEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGG 493
Query: 492 FNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLC-NMETP-AKQFLQ-LLNMQLSHQ 548
++ + D A + E E G +P +++ LC + +T A FL ++N
Sbjct: 494 LSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPN 553
Query: 549 ETNFQIYNFFIDGAGHVKRPDLARAVYELM 578
ET+ Y I+G + +A+ EL+
Sbjct: 554 ETS---YTILIEGLAY---EGMAKEALELL 577
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 4.8e-35, P = 4.8e-35
Identities = 145/586 (24%), Positives = 241/586 (41%)
Query: 116 VDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA 175
+ L+ K + + + + GK D+A F ++ G+ D+ Y ++
Sbjct: 223 LSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGV 282
Query: 176 LVEQGCFD-AVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVS 234
L + D AV + R M+ K DEA ++ + S
Sbjct: 283 LCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPS 342
Query: 235 GFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFL 294
++ L K + ++A K+ E+ K +D L Y++ + L RAG+LD A E L
Sbjct: 343 VIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLS-TYNILIDMLCRAGKLDTAFE-L 399
Query: 295 KSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK 354
+ G P V N +V RL K +L E +F +M +PD +T +++ K
Sbjct: 400 RDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
Query: 355 AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKT 414
G VD A ++Y+ + N IVY LI + G + +++ K+ I+ P +
Sbjct: 460 VGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQL 519
Query: 415 LSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELS 474
L+ D + + G+ E+ + + R +Y I L KA Y + +
Sbjct: 520 LNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMK 579
Query: 475 RMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPA 534
V Y +I GF K + + A +LL EM+ G +PT + +VI L ++
Sbjct: 580 EQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLD 639
Query: 535 KQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGS-NILM 593
+ ++ + E N IY+ IDG G V R D A + E + + GL P L + N L+
Sbjct: 640 EAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLL 699
Query: 594 ---------------LQSYLKRKNGIPRKL-YNTLIVGLCKAMKANLAWGFMREMRHNGM 637
QS +K P ++ Y LI GLCK K N A+ F +EM+ GM
Sbjct: 700 DALVKAEEINEALVCFQS-MKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGM 758
Query: 638 YPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLL 683
PS Y +I L N + + + +G S N ++
Sbjct: 759 KPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMI 804
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 7.1e-35, P = 7.1e-35
Identities = 122/404 (30%), Positives = 195/404 (48%)
Query: 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSK 190
V FN TL+ G L K A+ L +M +G D + Y ++N L ++G D + K
Sbjct: 186 VTFN-TLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244
Query: 191 QISMRGFENDVT-RTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNS 249
++ E DV T ++ LC K +++A+ F ++ + + ++ LC
Sbjct: 245 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304
Query: 250 RFEQAGKLLEDFKDRD---DVVKLEKAYDVWLRN--LVRAGRL-DLALEFLKSKNSLEGY 303
R+ A +LL D +R +VV D +++ LV A +L D E +K S++
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD---EMIK--RSID-- 357
Query: 304 VPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIE 363
P++F ++ L++ +RL E +F M P+ VT NT++ FCKA V+ +E
Sbjct: 358 -PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 416
Query: 364 LYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALC 423
L++ S+ GL N + YN LI L G A ++ K + G+ P T SIL D LC
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476
Query: 424 RDGKFEQMKDLVIFALERNIKLR-DV-TYDKFISALCKANKVEVGYLIHSELSRMNKVAS 481
+ GK E K LV+F + K+ D+ TY+ I +CKA KVE G+ + LS +
Sbjct: 477 KYGKLE--KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534
Query: 482 ENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIR 525
Y +I GF + + A L EM+E+G P + +IR
Sbjct: 535 VIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 141/659 (21%), Positives = 286/659 (43%)
Query: 136 TLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNAL-VEQGCFDAVAVVSKQISM 194
+L+MGY D A +F +M +G ++ AY L++ L V + +A+ + K
Sbjct: 258 SLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDD 317
Query: 195 RGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQA 254
F T T+++K LC ++ EA+ +++ + +++D+LC +FE+A
Sbjct: 318 ECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKA 377
Query: 255 GKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLV 314
+LL ++ + + Y+ + + G ++ A++ ++ S + P +N L+
Sbjct: 378 RELLGQMLEKGLMPNVI-TYNALINGYCKRGMIEDAVDVVELMESRK-LSPNTRTYNELI 435
Query: 315 SRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLS 374
K N + + + M E ++ PD VT N+++ C++G D A L ++ GL
Sbjct: 436 KGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494
Query: 375 PNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDL 434
P+ Y +I+SLC EA ++ + G+ P + L D C+ GK ++ +
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 435 VIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK 494
+ L +N +T++ I LC K++ L+ ++ ++ + +T LIH K
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLK 614
Query: 495 SNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQI 554
D A +M +G KP + I+ C + M+ + +
Sbjct: 615 DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFT 674
Query: 555 YNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIV 614
Y+ I G G + + + A V + M+ +G P + + +++ L+ K G +K +
Sbjct: 675 YSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYG-KQKGSEPELC 733
Query: 615 GLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLE-GHGRQ 673
+ M+ + + +M + + P+ + YE+LI +C N + V +H++ G
Sbjct: 734 AMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGIS 793
Query: 674 VTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIG---VFSGCIKVSQDI 730
+ + N LL K + EA ++++ + L QL + G K +
Sbjct: 794 PSELVFNALLSCCCKLKKHNEA-----AKVVDDMICVGHLPQLESCKVLICGLYKKGEKE 848
Query: 731 EG---LQKMIEQCFPLDTYTYNILLRRLSVSEIDHAC-ELFNRMRRKGYEPDQWTFDIL 785
G Q +++ + D + I++ + + A ELFN M + G + T+ +L
Sbjct: 849 RGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLL 907
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 8.3e-33, P = 8.3e-33
Identities = 107/411 (26%), Positives = 187/411 (45%)
Query: 135 DTLVMGYALAGKPDIALHLFGKMRFQ-GMDLDDYAYHVLLNALVEQGCFDAVAVVSKQIS 193
+ +V G+ G+ + AL+ +M Q G D Y ++ L+N L + G + +
Sbjct: 263 NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVML 322
Query: 194 MRGFENDV-TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMI-GIVVDALCKNSRF 251
G++ DV T ++ LCK ++ EAVE Q+++ R+C + ++ LCK ++
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT-RDCSPNTVTYNTLISTLCKENQV 381
Query: 252 EQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFN 311
E+A +L + ++ ++ ++ L +A+E + S +G P+ F +N
Sbjct: 382 EEATELARVLTSKG-ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS-KGCEPDEFTYN 439
Query: 312 FLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF 371
L+ L + +L E ++ M+ + +T NT++ FCKA A E++
Sbjct: 440 MLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH 499
Query: 372 GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQM 431
G+S N + YN LI+ LC +A +++ I G P K T + L CR G ++
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKA 559
Query: 432 KDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHG 491
D+V + VTY IS LCKA +VEV + + + + Y +I G
Sbjct: 560 ADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQG 619
Query: 492 FNKSNRADIAARLLVEM-EENGHKPTRALHRAVIRCLCNMETPAKQFLQLL 541
+ + A L EM E+N P +R V R LCN P ++ + L
Sbjct: 620 LFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFL 670
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 137/538 (25%), Positives = 242/538 (44%)
Query: 116 VDFLENYKKDRYYHQ-VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLN 174
VD + K R + V FN L+ A K ++ + L +M+ G+ D Y Y + +N
Sbjct: 68 VDLFGDMVKSRPFPSIVEFNK-LLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126
Query: 175 ALVEQGCFD-AVAVVSKQISMRGFEND-VTRTIMLKCLCKQKKIDEAVEYFQQLVSGREC 232
+ A+AV++K + + G+E D VT + +L C K+I +AV Q+V
Sbjct: 127 CFCRRSQLSLALAVLAKMMKL-GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK 185
Query: 233 VSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALE 292
F ++ L +++ +A L++ R L Y + L + G +DLAL
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV-TYGTVVNGLCKRGDIDLALN 244
Query: 293 FLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFF 352
L +K V FN ++ L K + DLF +M+ I P+ VT N+++
Sbjct: 245 LL-NKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCL 303
Query: 353 CKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412
C G A L + E ++PN + +N LI++ +G EA ++ + I + P
Sbjct: 304 CNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDT 363
Query: 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSE 472
T ++L + C + ++ K + F + ++ TY+ I+ CK +VE G + E
Sbjct: 364 ITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFRE 423
Query: 473 LSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRAL-HRAVIRCLCNME 531
+S+ V + TY +I GF ++ D A + +M N PT + + ++ LC+
Sbjct: 424 MSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSN-RVPTDIMTYSILLHGLCSYG 482
Query: 532 TPAKQFLQLLNMQLSHQETNFQIYNFFIDG---AGHVKRP-DLARAVY---ELMQRSGLV 584
+ +Q S E N IYN I+G AG V DL ++ +++ + ++
Sbjct: 483 KLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMI 542
Query: 585 PQLGSNILMLQS---YLKRK-NG-IPRK-LYNTLIVGLCKAMKANLAWGFMREMRHNG 636
L S L+ ++ + K K +G +P YNTLI + + ++EMR +G
Sbjct: 543 SGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSG 600
|
|
| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 2.6e-32, P = 2.6e-32
Identities = 123/440 (27%), Positives = 203/440 (46%)
Query: 94 HTRATFHAIFKLLHCAKLT-PLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALH 152
H T+ +IF C + L + L K Y + ++L+ G+ + A+
Sbjct: 108 HNLYTY-SIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVA 166
Query: 153 LFGKMRFQGMDLDDYAYHVLLNALVEQG-CFDAVAVVSKQISMRGFEND-VTRTIMLKCL 210
L +M G D + L++ L + +AVA+V + + ++G + D VT ++ L
Sbjct: 167 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMV-VKGCQPDLVTYGAVINGL 225
Query: 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKL 270
CK+ + D A+ ++ G+ + ++D LCK + A L + + +K
Sbjct: 226 CKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG--IKP 283
Query: 271 EK-AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYV-PEVFRFNFLVSRLLKENRLMEVFD 328
+ Y+ + L GR A L + LE + P++ FN L+ +KE +L+E
Sbjct: 284 DVFTYNPLISCLCNYGRWSDASRLLS--DMLEKNINPDLVFFNALIDAFVKEGKLVEAEK 341
Query: 329 LFMDM-KEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSL 387
L+ +M K PD V NT++ FCK V+ +E+++ S+ GL N + Y LI+
Sbjct: 342 LYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGF 401
Query: 388 CGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFAL--ERNIKL 445
A V K + G+ P T +IL D LC +G E LV+F +R++KL
Sbjct: 402 FQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETA--LVVFEYMQKRDMKL 459
Query: 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLL 505
VTY I ALCKA KVE G+ + LS + TY ++ GF + + A L
Sbjct: 460 DIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALF 519
Query: 506 VEMEENGHKPTRALHRAVIR 525
VEM+E+G P + +IR
Sbjct: 520 VEMKEDGPLPNSGTYNTLIR 539
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 119/405 (29%), Positives = 188/405 (46%)
Query: 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSK 190
V FN TL+ G L K A+ L +M +G D Y V++N L ++G D +
Sbjct: 187 VTFN-TLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 245
Query: 191 QISMRGFENDVT--RTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248
++ E V TI + LCK K +D+A+ F+++ + + ++ LC
Sbjct: 246 KMEQGKLEPGVLIYNTI-IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNY 304
Query: 249 SRFEQAGKLLEDFKDRD---DVVKLEKAYDVWLRN--LVRAGRL-DLALEFLKSKNSLEG 302
R+ A +LL D +R DV D +++ LV A +L D E +K S++
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD---EMVK--RSID- 358
Query: 303 YVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAI 362
P + ++ L++ +RL E +F M PD VT NT++ FCK V+ +
Sbjct: 359 --PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 363 ELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422
E+++ S+ GL N + YN LI L G A E+ K + G+ P T + L D L
Sbjct: 417 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Query: 423 CRDGKFEQMKDLVIFALERNIKLRDV--TYDKFISALCKANKVEVGYLIHSELSRMNKVA 480
C++GK E K +V+F + K+ TY+ I +CKA KVE G+ + LS
Sbjct: 477 CKNGKLE--KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 534
Query: 481 SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIR 525
Y +I GF + + A L EM+E+G P + +IR
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIR 579
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.7e-32, P = 6.7e-32
Identities = 119/492 (24%), Positives = 219/492 (44%)
Query: 116 VDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA 175
V+ + K R + + L+ A K D+ + L +M+ G+ + Y Y +L+N
Sbjct: 66 VNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINC 125
Query: 176 LVEQGCFD-AVAVVSKQISMRGFEND-VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233
+ A+AV++K + + G+E D VT +L C +I +AV Q+V
Sbjct: 126 FCRRSQLSLALAVLAKMMKL-GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184
Query: 234 SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEF 293
F ++ L +++R +A L++ + L Y + + L + G +DLAL
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLV-TYGIVVNGLCKRGDIDLALSL 243
Query: 294 LKSKNSLEGYV-PEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFF 352
LK +G + P V +N ++ L + + +LF +M I P+ VT N+++
Sbjct: 244 LKKME--QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301
Query: 353 CKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEA---Y-EVLKNSIDHGL 408
C G A L E ++PN + ++ LI++ +G EA Y E++K SID +
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 361
Query: 409 FPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYL 468
F T S L + C + ++ K + + ++ VTY+ I CKA +V+ G
Sbjct: 362 F----TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGME 417
Query: 469 IHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLC 528
+ E+S+ V + TY LIHGF ++ D A + +M +G P + ++ LC
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLC 477
Query: 529 NMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLG 588
N + +Q S E + YN I+G + + ++ + G+ P +
Sbjct: 478 NNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVV 537
Query: 589 SNILMLQSYLKR 600
+ M+ + ++
Sbjct: 538 TYTTMMSGFCRK 549
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GZA6 | PP113_ARATH | No assigned EC number | 0.4665 | 0.9317 | 0.8543 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00037587001 | SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (802 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 806 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-12
Identities = 73/288 (25%), Positives = 124/288 (43%), Gaps = 49/288 (17%)
Query: 283 RAGRLDLALE---FLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMK-EGQ- 337
RAG++ A ++SKN P+ FN L+S + + FD+ +MK E
Sbjct: 519 RAGQVAKAFGAYGIMRSKN----VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574
Query: 338 ISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN--SLCGD----- 390
I PD +T+ ++ AG VD A E+Y+ E+ + VY +N S GD
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 391 ----------------------------GSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422
G +A+E+L+++ G+ G + S L A
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
Query: 423 CRDGKFEQMKDLVIFALERNIKLRDV--TYDKFISALCKANKVEVGYLIHSELSRMNKVA 480
++ K L ++ ++IKLR T + I+ALC+ N++ + SE+ R+
Sbjct: 695 SNAKNWK--KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 481 SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLC 528
+ TY L+ + + AD+ LL + +E+G KP + R + LC
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 340 PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLC 388
PD VT NT++ +CK G V+ A++L+ + G+ PN Y+ LI+ LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-08
Identities = 56/225 (24%), Positives = 87/225 (38%), Gaps = 9/225 (4%)
Query: 238 IGIVVDALCKNSRFEQAGKLLEDFK--DRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLK 295
+G ++ A Q + E ++ ++ + Y + + + + G D AL
Sbjct: 582 VGALMKACANAG---QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 296 SKNSLEGYVP-EVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK 354
+G P EVF F+ LV L + F++ D ++ I V+ ++++
Sbjct: 639 DMKK-KGVKPDEVF-FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696
Query: 355 AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKT 414
A A+ELY+ L P N LI +LC +A EVL GL P T
Sbjct: 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756
Query: 415 LSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK 459
SIL A R + DL+ A E IK V LC
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 744 DTYTYNILLRRL-SVSEIDHACELFNRMRRKGYEPDQWTFDIL 785
D TYN L+ +++ A +LFN M+++G +P+ +T+ IL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-07
Identities = 66/300 (22%), Positives = 122/300 (40%), Gaps = 43/300 (14%)
Query: 136 TLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMR 195
++ GY G PD AL + M + D+ +L+A G D + + +
Sbjct: 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418
Query: 196 GFENDVTRT-IMLKCLCKQKKIDEAVEYFQQL-----VSGRECVSGF------------- 236
G + V +++ K K ID+A+E F + +S ++G
Sbjct: 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478
Query: 237 --MIGIV-------VDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRN-----LV 282
M+ + + AL +R G L+ + V++ +D +L N V
Sbjct: 479 RQMLLTLKPNSVTLIAALSACAR---IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535
Query: 283 RAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDG 342
R GR++ A N + +V +N L++ + + +LF M E ++PD
Sbjct: 536 RCGRMNYAW------NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
Query: 343 VTMNTVLCFFCKAGMVDVAIELYKS-RSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLK 401
VT ++LC ++GMV +E + S ++ ++PN Y +++ L G EAY +
Sbjct: 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 90/448 (20%), Positives = 162/448 (36%), Gaps = 90/448 (20%)
Query: 256 KLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLA----LEFLKSKNSLEGYVPEVFRFN 311
+LL D + +D + LE ++ + G LD+ +F K+ + V E FRF
Sbjct: 379 RLLRDGRIKDCIDLLE--------DMEKRGLLDMDKIYHAKFFKACKK-QRAVKEAFRFA 429
Query: 312 FLV--SRLLKENRLMEV----------FDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVD 359
L+ L N LM V + ++E + D T++ K+G VD
Sbjct: 430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489
Query: 360 VAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILA 419
E++ G+ N + LI+ G +A+ + P + + L
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 420 DALCRDGKFEQMKDLV--IFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMN 477
A + G ++ D++ + A I +T + A A +V+ ++ + N
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 478 KVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQF 537
+ Y ++ ++ D A + +M++ G KP + F
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD------------------EVF 651
Query: 538 LQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGS---NILM- 593
L +D AGH D A + + ++ G+ +LG+ + LM
Sbjct: 652 FSAL-----------------VDVAGHAGDLDKAFEILQDARKQGI--KLGTVSYSSLMG 692
Query: 594 -----------LQSYLKRKNGIPRKL------YNTLIVGLCKAMKANLAWGFMREMRHNG 636
L+ Y K+ KL N LI LC+ + A + EM+ G
Sbjct: 693 ACSNAKNWKKALELYEDIKS---IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 637 MYPSMECYEELIKLLCSTKNYDMVVGVM 664
+ P+ Y I L+ S + D VG+
Sbjct: 750 LCPNTITYS--ILLVASERKDDADVGLD 775
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 3e-06
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK 354
P+V +N L+ K+ ++ E LF +MK+ I P+ T + ++ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 7e-06
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 375 PNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCR 424
P+ + YN LI+ C G EA ++ G+ P T SIL D LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLC 652
YNTLI G CK K A EM+ G+ P++ Y LI LC
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 3e-04
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 484 TYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCN 529
TY LI G+ K + + A +L EM++ G KP + +I LC
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 6e-04
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 338 ISPDGVTMNTVLCFFCKAGMVDVAIEL 364
+ PD VT NT++ C+AG VD A+EL
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVEL 29
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 8e-04
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 746 YTYNILLRRLSVS-EIDHACELFNRMRRKGYEPD 778
TYN L+ L + ++ A ELF M+ +G EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 0.001
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 371 FGLSPNGIVYNYLINSLCGDGSTHEAYEVLK 401
GL P+ + YN LI+ LC G EA E+L
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 136 TLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNAL 176
TL+ GY GK + AL LF +M+ +G+ + Y Y +L++ L
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPS 640
YNTLI GLCKA + A +EM+ G+ P
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 806 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.76 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.4 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.4 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.37 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.37 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.35 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.33 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.2 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.18 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.13 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.13 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.1 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.1 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.03 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.02 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.01 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.89 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.88 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.85 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.76 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.73 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.73 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.7 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.64 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.63 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.62 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.61 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.59 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.51 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.49 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.45 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.41 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.37 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.32 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.31 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.31 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.24 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.17 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.16 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.16 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.15 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.13 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.12 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.1 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.1 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.09 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.08 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.06 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.99 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.83 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.79 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.79 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.77 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.74 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.74 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.62 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.55 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.52 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.47 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.36 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.32 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.23 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.22 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.2 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.13 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.08 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.05 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.03 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.02 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.01 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.0 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.0 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.99 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.98 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.94 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.92 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.91 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.91 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.89 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.87 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.87 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.8 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.74 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.73 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.66 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.65 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.64 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.59 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.54 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.52 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.49 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.45 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.44 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.38 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.3 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.29 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.24 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.24 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.2 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.18 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.15 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.98 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.91 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.85 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.74 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.66 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.52 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.47 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.43 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.22 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.16 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.13 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.89 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.88 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.86 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.77 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.65 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.56 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.38 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.3 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.16 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 94.15 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.99 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.91 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.87 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.85 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.77 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.72 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.72 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.39 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.06 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.06 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.96 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.93 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.92 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.59 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.3 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.2 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.08 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.08 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.96 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.81 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.53 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.43 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.37 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.28 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.25 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.14 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.11 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.66 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.65 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.56 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.51 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.35 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.17 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.1 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.94 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.93 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.51 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.49 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.46 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.35 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.24 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.1 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.06 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.72 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.07 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.47 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.08 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.56 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.97 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.79 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.79 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 84.57 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.07 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.06 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 83.82 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.15 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 82.8 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.35 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.94 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.62 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.62 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 81.52 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.37 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.33 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 81.04 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 80.4 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.31 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-82 Score=728.50 Aligned_cols=679 Identities=13% Similarity=0.105 Sum_probs=641.2
Q ss_pred CCCCCHHHHHHHHhcccCCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHH
Q 047492 55 GIRLTESFALQVLNYGKKTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFN 134 (806)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (806)
+.++++.....++..+...+.+..|+.+|+.+.. .++.++..+|..++..+.+.+.++.+..++..+.+.+..++..++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 3455677778888888888899999999999865 467788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CCccchHHHHHHhhcc
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGF-ENDVTRTIMLKCLCKQ 213 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 213 (806)
|.++..|++.|+++.|.++|++|. .||..+||.+|.+|++.|++++|.++|++|...|. ||..||+.++++|+..
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI 200 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc
Confidence 999999999999999999999997 46999999999999999999999999999999987 8999999999999999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH
Q 047492 214 KKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEF 293 (806)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (806)
++++.+.+++..|.+.|..||..+||+|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|+++
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999974 5778999999999999999999999
Q ss_pred HHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 047492 294 LKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL 373 (806)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 373 (806)
|++|.. .|+.||..||+.+|.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 276 f~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 351 (857)
T PLN03077 276 FFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--- 351 (857)
T ss_pred HHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Confidence 999987 8999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047492 374 SPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKF 453 (806)
Q Consensus 374 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 453 (806)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|
T Consensus 352 -~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 352 -KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred -CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCc
Q 047492 454 ISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETP 533 (806)
Q Consensus 454 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 533 (806)
+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.+..
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchH
Confidence 9999999999999999999965 4778999999999999999999999999986 5999999999999999999997
Q ss_pred HHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHH
Q 047492 534 AKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLI 613 (806)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li 613 (806)
.........+...+..+|..++|+++++|++.|++++|.++|+.+ .||..+ |+++|
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s-------------------~n~lI 561 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVS-------------------WNILL 561 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhh-------------------HHHHH
Confidence 666666677778899999999999999999999999999999987 567766 99999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-hCCCCCCchhHHHHHHHhhccccH
Q 047492 614 VGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLE-GHGRQVTSFIGNTLLLHALKTRDL 692 (806)
Q Consensus 614 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 692 (806)
.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++..+.+.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999999 789999999999999999999999
Q ss_pred HHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 693 YEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 693 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
++|.++++++. ..|+..+|++|+.+|..+|+.+.+....+++.+. .+.+...|..|.+.|+. |+|++|.++.+.|+
T Consensus 642 ~eA~~~~~~m~--~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l-~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 642 TEAYNFINKMP--ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL-DPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999985 6789999999999999999999999999999986 35567778888899999 99999999999999
Q ss_pred HcCCCCChh
Q 047492 772 RKGYEPDQW 780 (806)
Q Consensus 772 ~~g~~p~~~ 780 (806)
+.|++++.-
T Consensus 719 ~~g~~k~~g 727 (857)
T PLN03077 719 ENGLTVDPG 727 (857)
T ss_pred HcCCCCCCC
Confidence 999988763
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=701.96 Aligned_cols=666 Identities=13% Similarity=0.102 Sum_probs=634.7
Q ss_pred cCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHH
Q 047492 93 HHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVL 172 (806)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 172 (806)
.++...++.++..+++.|+++.|..+++.|...|.+|+..+|..++.+|.+.+.++.+..++..+.+.|..++...+|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 55778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 047492 173 LNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFE 252 (806)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (806)
+..|++.|+.+.|..+|++|.+ ++..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.+++.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 9999999999999999999974 6888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 253 QAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMD 332 (806)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 332 (806)
.+.+++..|... |..||..+|+.+|.+|++.|++++|.++|++|.. ||..+||++|.+|++.|+.++|+++|++
T Consensus 205 ~~~~~~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 205 RGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hHHHHHHHHHHc-CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999998 9999999999999999999999999999999963 8999999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 047492 333 MKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412 (806)
Q Consensus 333 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 412 (806)
|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 4688
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGF 492 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 492 (806)
.+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|..|+..+|+.|+.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHH
Q 047492 493 NKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLAR 572 (806)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 572 (806)
++.|++++|.++|++|.+ +|..+|+.++.+|+..++..++...+.+|. .+..||..+|+.++.+|++.|..+.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~-~~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHH-hCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 999999999999999964 788999999999999999766665556664 568999999999999999999999999
Q ss_pred HHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 573 AVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLC 652 (806)
Q Consensus 573 ~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 652 (806)
+++..+.+.|+.++..+ +++||++|++.|++++|.++|+.+ .||..+|++++.+|+
T Consensus 510 ~i~~~~~~~g~~~~~~~-------------------~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFL-------------------PNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYV 565 (857)
T ss_pred HHHHHHHHhCCCcccee-------------------chHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHH
Confidence 99999999999998887 999999999999999999999987 689999999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh--hccCcchhhHHHHHHhhhccccchhhH
Q 047492 653 STKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML--INEQSKISLLGQLIGVFSGCIKVSQDI 730 (806)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~ 730 (806)
+.|+.++|.++|++|.+.|+.||..+|+.++.++.+.|.+++|.++|+.+. .+..|+..+|+.++++|.+.|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999997 478899999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC-hhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 731 EGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD-QWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
+++++| .+.||..+|++|+.+|.. |+.+.+....+++.+. .|+ ...|..+...|...|+|++|.++.+.|
T Consensus 646 ~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 646 NFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999998 378999999999999988 9999999888888764 554 556667788999999999999999988
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=601.50 Aligned_cols=546 Identities=15% Similarity=0.191 Sum_probs=500.5
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccC-CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHH
Q 047492 94 HTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRY-YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVL 172 (806)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 172 (806)
.+...|..++..+++.|+++.|.++|+.|...++ +++..+++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3567888888999999999999999999999875 57888888999999999999999999999974 899999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCC-CCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH
Q 047492 173 LNALVEQGCFDAVAVVSKQISMRGF-ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRF 251 (806)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (806)
+.+|++.|+++.|.++|++|.+.|+ |+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 9999999999999999999999998 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhc-CCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 047492 252 EQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSL-EGYVPEVFRFNFLVSRLLKENRLMEVFDLF 330 (806)
Q Consensus 252 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 330 (806)
++|.++|++|... ++.||..+|+.+|.+|++.|++++|.++|++|... .++.||..+|+++|.+|++.|++++|.++|
T Consensus 524 eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 524 AKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998 99999999999999999999999999999999753 578999999999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 047492 331 MDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFP 410 (806)
Q Consensus 331 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 410 (806)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 047492 411 GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIH 490 (806)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 490 (806)
|..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHH
Q 047492 491 GFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDL 570 (806)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 570 (806)
+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . ........+ ....|+. .......+..+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~-y~ka~~l~~--------~v~~f~~-g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--R-FEKACALGE--------PVVSFDS-GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--H-HHHHhhhhh--------hhhhhhc-cccccccchHHH
Confidence 999999999999999999999999999999999865532 1 111111111 0111110 111222344577
Q ss_pred HHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047492 571 ARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKL 650 (806)
Q Consensus 571 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 650 (806)
|..+|++|.+.|+.||..| |+.++.+++..+..+.+..++++|...+..|+..+|++++++
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T-------------------~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEV-------------------LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHH-------------------HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 9999999999999999988 999998888899999999999999988999999999999999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCch
Q 047492 651 LCSTKNYDMVVGVMNHLEGHGRQVTSF 677 (806)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 677 (806)
+++. .++|..++++|...|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8543 468999999999999999874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=596.76 Aligned_cols=537 Identities=16% Similarity=0.177 Sum_probs=458.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHH
Q 047492 233 VSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNF 312 (806)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (806)
++...|..++..+++.|++++|.++|++|...+-+.++..+++.++..|.+.|..++|+++|+.|.. ||..+|+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHH
Confidence 4567778888888888888888888888888733456777778888888888888888888888753 88888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 047492 313 LVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS 392 (806)
Q Consensus 313 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 392 (806)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047492 393 THEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALE--RNIKLRDVTYDKFISALCKANKVEVGYLIH 470 (806)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 470 (806)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888876 577888888888888888888888888888
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCC
Q 047492 471 SELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQET 550 (806)
Q Consensus 471 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (806)
++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.++...+...+.+|...+..|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888766666667777788888
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+ |+.||.+|++.|++++|.++|+
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt-------------------yN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST-------------------MNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH-------------------HHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999887 9999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcch
Q 047492 631 EMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKI 710 (806)
Q Consensus 631 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 710 (806)
+|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++..+. +.+.++....+.+..-..
T Consensus 744 eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~--- 818 (1060)
T PLN03218 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS--- 818 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc---
Confidence 999999999999999999999999999999999999999999999999999986543 234555444333321110
Q ss_pred hhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 047492 711 SLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGL 789 (806)
Q Consensus 711 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 789 (806)
...+...+..++|+.+|++|.+.|+.||..+|+.++.++.+ +..+.+..++++|...+..|+..+|++++.+|
T Consensus 819 ------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 819 ------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred ------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 11111223345699999999999999999999999977777 99999999999999999999999999999998
Q ss_pred hccCCHHHHHHHHHhhC
Q 047492 790 YNCLRTDEAERRLEEMF 806 (806)
Q Consensus 790 ~~~g~~~eA~~~l~~m~ 806 (806)
++. .++|..++++|.
T Consensus 893 ~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAA 907 (1060)
T ss_pred ccC--hHHHHHHHHHHH
Confidence 543 368999999984
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=553.73 Aligned_cols=475 Identities=13% Similarity=0.116 Sum_probs=353.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhcc-CCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHH
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDR-YYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLL 173 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 173 (806)
+...++.++..+.+.|+++.|.++|+.|...+ ..|+..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34466777777777777777777777776643 56777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 047492 174 NALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
.+|++.|+++.|.++|++|.+ |+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 777777777777777777753 56677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDM 333 (806)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (806)
+.+++..+... +..||..+|+.+|++|++.|++++|.++|++|.+ +|+.+||++|.+|++.|+.++|.++|++|
T Consensus 243 ~~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 243 GQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHh-CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77777777766 7777777777777777777777777777777753 57777777777777777777777777777
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 047492 334 KEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKK 413 (806)
Q Consensus 334 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 413 (806)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 777777777777777777777777777777777777777777777777777777777777777777777753 5667
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-cCCCCCHHHHHHHHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSR-MNKVASENTYIQLIHGF 492 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 492 (806)
+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777764 46777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHH
Q 047492 493 NKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLAR 572 (806)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 572 (806)
++.|++++|.+++++| ++.|+..+|++++.+|+..++. +......+......+.+..+|+.+++.|++.|++++|.
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~-~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNL-ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCc-HHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 7777777777776654 4677777777777777777764 33333333333334446778999999999999999999
Q ss_pred HHHHHHHHCCCccC
Q 047492 573 AVYELMQRSGLVPQ 586 (806)
Q Consensus 573 ~~~~~m~~~~~~p~ 586 (806)
++++.|.+.|+...
T Consensus 549 ~v~~~m~~~g~~k~ 562 (697)
T PLN03081 549 KVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHcCCccC
Confidence 99999999998643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=541.97 Aligned_cols=512 Identities=14% Similarity=0.173 Sum_probs=436.5
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHH
Q 047492 163 DLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGF--ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGI 240 (806)
Q Consensus 163 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (806)
.++..+|+.+|.++.+.|++++|.++|+.|...+. |+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 45777999999999999999999999999987652 6888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhc
Q 047492 241 VVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKE 320 (806)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 320 (806)
|+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|+++|++|.+ .|+.||..+|+.++.+|++.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcC
Confidence 99999999999999999999863 6788899999999999999999999999987 78889999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 321 NRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 321 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ +|..+||.||.+|++.|++++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864 68889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC
Q 047492 401 KNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA 480 (806)
Q Consensus 401 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 480 (806)
++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+ |
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988854 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHH
Q 047492 481 SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFID 560 (806)
Q Consensus 481 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (806)
|..+||.||.+|++.|+.++|+++|++|.+.|+.| |..+|+.++.
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-----------------------------------d~~T~~~ll~ 434 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-----------------------------------NHVTFLAVLS 434 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------------------------CHHHHHHHHH
Confidence 77889999999999999999999999988877666 4566888888
Q ss_pred hhhcCCChHHHHHHHHHHHH-CCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047492 561 GAGHVKRPDLARAVYELMQR-SGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP 639 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 639 (806)
+|.+.|..++|.++|+.|.+ .|+.|+..+ |+.++++|++.|++++|.+++++| ++.|
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~-------------------y~~li~~l~r~G~~~eA~~~~~~~---~~~p 492 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMH-------------------YACMIELLGREGLLDEAYAMIRRA---PFKP 492 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccc-------------------hHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence 88888888888888888875 588888776 888888888888888888888765 4788
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHh
Q 047492 640 SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGV 719 (806)
Q Consensus 640 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 719 (806)
+..+|++++.+|...|+++.|..+++++.+.+ |.+..+|..|+++
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-----------------------------------p~~~~~y~~L~~~ 537 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMG-----------------------------------PEKLNNYVVLLNL 537 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-----------------------------------CCCCcchHHHHHH
Confidence 88888888888888888888888888876442 3344567788889
Q ss_pred hhccccchhhHHHHHHHHHcCCCCC-hhhHHHHH-------HHH---hh--hcHHHHHHHHHHHHHcCCCCChh
Q 047492 720 FSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNILL-------RRL---SV--SEIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 720 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li-------~~~---~~--g~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
|++.|++++|.+++++|.+.|+.+. ..+|..+. .+- -. .-+++..++..+|.+.|+.||..
T Consensus 538 y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999987533 33443221 110 00 22455667889999999999854
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=375.38 Aligned_cols=693 Identities=12% Similarity=0.021 Sum_probs=420.9
Q ss_pred CCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHH
Q 047492 72 KTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIAL 151 (806)
Q Consensus 72 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 151 (806)
..+++..|+.+++.+... .+.+...+..+...+...|+++.|...++..... .+.+..++..++..+...|++++|.
T Consensus 171 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~g~~~~A~ 247 (899)
T TIGR02917 171 AENRFDEARALIDEVLTA--DPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL-RPNNPAVLLALATILIEAGEFEEAE 247 (899)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344555566665554322 1223445555555555566666666666655543 2344555555555555666666666
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC----------------------------------C
Q 047492 152 HLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRG----------------------------------F 197 (806)
Q Consensus 152 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------------------------~ 197 (806)
..++.+.+.... +...+......+...|++++|...++.+.+.+ +
T Consensus 248 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 326 (899)
T TIGR02917 248 KHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326 (899)
T ss_pred HHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666555543211 11222222222334445555555555544443 3
Q ss_pred CCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHH
Q 047492 198 ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVW 277 (806)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 277 (806)
.+...+..+...+...|++++|...++.+.+... .+...+..+...+.+.|++++|.+.|+++... .+.+...+..+
T Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 403 (899)
T TIGR02917 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQL 403 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 3333444444444445555555555544443332 23344444445555555555555555544432 11223344444
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 047492 278 LRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGM 357 (806)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 357 (806)
...+...|++++|.+.++.+.... +........++..+.+.|++++|..+++.+... .+.+..++..+...|...|+
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 480 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGD 480 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCC
Confidence 444455555555555555443311 011223333444555555555555555555443 22344555555555555666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047492 358 VDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIF 437 (806)
Q Consensus 358 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (806)
+++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+.. +..++..+...+.+.|+.++|..++++
T Consensus 481 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 481 LAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666665555432 233444555555555556666666666655544322 445555555555556666666666665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047492 438 ALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTR 517 (806)
Q Consensus 438 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (806)
+.+.+ +.+...+..+...|.+.|++++|..+++.+.+..+. +...|..+...+...|++++|...|+++.+.. ..+.
T Consensus 559 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 635 (899)
T TIGR02917 559 AAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSA 635 (899)
T ss_pred HHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 55543 334445555556666666666666666665544332 45556666666666666666666666655431 1233
Q ss_pred HhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHH
Q 047492 518 ALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSY 597 (806)
Q Consensus 518 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 597 (806)
..+..+..++...++. +.+...++......+.+...+..++..+...|++++|.++++.+.+.. |
T Consensus 636 ~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~------------ 700 (899)
T TIGR02917 636 LALLLLADAYAVMKNY-AKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--P------------ 700 (899)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c------------
Confidence 3444455555555553 333333333334444455556666666666666666666666655432 2
Q ss_pred HhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch
Q 047492 598 LKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF 677 (806)
Q Consensus 598 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 677 (806)
.+...+..+...+...|++++|...|+.+.+. .|+..++..+..++.+.|++++|.+.++.+.+.. +.+..
T Consensus 701 ------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 701 ------KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred ------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 23335888899999999999999999999985 4555777888999999999999999999998865 34667
Q ss_pred hHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 047492 678 IGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV 757 (806)
Q Consensus 678 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 757 (806)
.++.+...+...|+..+|...++++....|.+..+++.++.++...|+ .+|+..++++.+. .+.+...+..+...+..
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHH
Confidence 888888899999999999999999999899999999999999999999 8899999999986 35567778888999988
Q ss_pred -hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHhhC
Q 047492 758 -SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEEMF 806 (806)
Q Consensus 758 -g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m~ 806 (806)
|++++|.+.|+++.+.+.. |..++..+..++.+.|+.++|.+++++|+
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999998765 88899999999999999999999999985
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=361.95 Aligned_cols=712 Identities=12% Similarity=0.026 Sum_probs=545.9
Q ss_pred cCCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhH
Q 047492 71 KKTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIA 150 (806)
Q Consensus 71 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 150 (806)
...+++..|...|+-+.... +.+...+..+...+...|+++.|..+++.+... .+.+...+..+...+...|++++|
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A 212 (899)
T TIGR02917 136 LGLGQLELAQKSYEQALAID--PRSLYAKLGLAQLALAENRFDEARALIDEVLTA-DPGNVDALLLKGDLLLSLGNIELA 212 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCCHHHH
Confidence 34678899999998775432 234567888889999999999999999998774 466788899999999999999999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCC
Q 047492 151 LHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 151 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 230 (806)
...|++..... +.+..++..+...+...|++++|...++.+.+..+.+...+......+...|++++|...|+.+.+.+
T Consensus 213 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 213 LAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA 291 (899)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999998763 33667888899999999999999999999998877666666566666778899999999999988766
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccH
Q 047492 231 ECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRF 310 (806)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 310 (806)
.. +...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...++.+... ...+...+
T Consensus 292 ~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 366 (899)
T TIGR02917 292 PE-YLPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRLGRVDEAIATLSPALGL--DPDDPAAL 366 (899)
T ss_pred CC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHH
Confidence 42 2334445566777888899998888887764 2334556777778888888888888888887642 23456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 047492 311 NFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGD 390 (806)
Q Consensus 311 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 390 (806)
..+...+.+.|++++|.++|+++.+... .+...+..+...+...|++++|.+.|+.+.+... ........++..+.+.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhc
Confidence 7788888888888888888888876532 3556667777777888888888888888776431 2334555667777788
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047492 391 GSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIH 470 (806)
Q Consensus 391 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 470 (806)
|++++|.++++++.... ..+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 445 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888877643 3356677777788888888888888888877654 445556667777778888888888888
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCC
Q 047492 471 SELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQET 550 (806)
Q Consensus 471 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (806)
+.+...++. +..++..+...+.+.|+.++|...++++.+.+ ..+...+..+...+...++. ..+...++......+.
T Consensus 523 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 523 EKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL-KKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCC
Confidence 887766544 66777777778888888888888888776642 23445566666777777774 3444444444555566
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcch-hHHHHHHHHhhh---------------CCCCchhHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGS-NILMLQSYLKRK---------------NGIPRKLYNTLIV 614 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~~~~~~~~~~---------------~~~~~~~~~~li~ 614 (806)
++..|..+...|...|++++|...|+++.+. .|+... +..+...+...+ .+.+..++..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 7777788888888888888888888777753 233222 333333333222 2334567889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHH
Q 047492 615 GLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYE 694 (806)
Q Consensus 615 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 694 (806)
.+...|++++|..+++.+.+.+ ..+...+..+...+...|++++|.+.++.+...+... ..+..+...+...|+..+
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998864 4566778888889999999999999999998876443 566677888999999999
Q ss_pred HHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 695 AWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 695 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|...++.+....|.+..++..++..|...|+.++|+..|+++.+. .+.+...++.+...+.. |+ .+|+..++++...
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999987 46788899999999999 88 8899999999876
Q ss_pred CCCCChhhHHHHHhhhhccCCHHHHHHHHHhhC
Q 047492 774 GYEPDQWTFDILKCGLYNCLRTDEAERRLEEMF 806 (806)
Q Consensus 774 g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m~ 806 (806)
. +-+..++..+..++.+.|++++|.+++++++
T Consensus 833 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 833 A-PNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 2355667788899999999999999998864
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-26 Score=269.65 Aligned_cols=653 Identities=11% Similarity=0.009 Sum_probs=404.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhH-------
Q 047492 97 ATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAY------- 169 (806)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~------- 169 (806)
...-..++..-..++.+.|.+.++++... .+.++.++..++..+.+.|+.++|.+.+++..+. .|+...+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~-~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELI-DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHH
Confidence 34556677777888999999999988874 4557888888999999999999999999999877 4444332
Q ss_pred ----------HHHHHHHHhcCCcchHHHHHHHHHhcCCCCcc-chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhH
Q 047492 170 ----------HVLLNALVEQGCFDAVAVVSKQISMRGFENDV-TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMI 238 (806)
Q Consensus 170 ----------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 238 (806)
......+...|++++|...|+.+....+++.. ....+.......|+.++|.+.++++.+..+ .+...+
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~ 184 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLR 184 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHH
Confidence 22233567788899999999888877665543 111122222345888889999988888754 455677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-cccHHHHHHHH
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-VFRFNFLVSRL 317 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~ 317 (806)
..+...+...|++++|+..++++... . +.. ...+...+..+.. .+..++ ...+...+..+
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~-~--~~~---------------~~aa~~~~~~l~~-~~~~~~~~~~l~~~l~~~ 245 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKS-P--AGR---------------DAAAQLWYGQIKD-MPVSDASVAALQKYLQVF 245 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC-C--Cch---------------HHHHHHHHHHHhc-cCCChhhHHHHHHHHHHC
Confidence 78888888889999999888887653 1 100 0001111111100 000000 11111112222
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 047492 318 LKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAY 397 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 397 (806)
-.......|...+..+......|+... ......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|.
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~ 323 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAV 323 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 222223344444444333222222111 122334445566666666666555432 224455555556666666666666
Q ss_pred HHHHHHHhCCCCC-CHHHH------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 047492 398 EVLKNSIDHGLFP-GKKTL------------SILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVE 464 (806)
Q Consensus 398 ~~~~~m~~~~~~p-~~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 464 (806)
..|++..+..... ....+ ......+.+.|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 324 ~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 324 AQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 6666655432211 11111 111233445566666666666665553 334445555556666666666
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------CHHhHHHHHHHHHccCCcHHH
Q 047492 465 VGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKP--------TRALHRAVIRCLCNMETPAKQ 536 (806)
Q Consensus 465 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--------~~~~~~~ll~~~~~~~~~~~~ 536 (806)
+|.+.|++..+..+. +...+..+...|. .++.++|+.+++.+....... ....+......+...++ ...
T Consensus 403 eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~-~~e 479 (1157)
T PRK11447 403 AAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK-WAQ 479 (1157)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC-HHH
Confidence 666666666554433 3444444444443 345566665555433210000 00112222333444444 333
Q ss_pred HHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH
Q 047492 537 FLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL 616 (806)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 616 (806)
+...++......+.++..+..+...|.+.|++++|...++++.+. .|+... .+..+...+
T Consensus 480 A~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~------------------~~~a~al~l 539 (1157)
T PRK11447 480 AAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPE------------------QVYAYGLYL 539 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHH------------------HHHHHHHHH
Confidence 344444444445556777788888999999999999999998853 454432 233444556
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 617 CKAMKANLAWGFMREMRHNGMYPSME---------CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
...++.++|+..++.+......++.. .+......+...|+.++|.++++. .+.+......+...+.
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQ 614 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHH
Confidence 77899999999988765432222221 123456678889999999999872 2345556677888899
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~ 766 (806)
+.|+.++|...++++....|.+...+..++..|...|+.++|+..++.+.+. .+.+...+..+..++.. |++++|.++
T Consensus 615 ~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988875 23455667777888888 999999999
Q ss_pred HHHHHHcCCC--C---ChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 767 FNRMRRKGYE--P---DQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 767 ~~~m~~~g~~--p---~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
++++...... | +...+..+...+...|+.++|++.+++
T Consensus 694 ~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 694 FNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999865322 2 224566677888999999999999875
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-24 Score=255.62 Aligned_cols=621 Identities=11% Similarity=0.007 Sum_probs=415.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHH----------------HHHHHHHHhcCChhhHHHHHHHHh
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFN----------------DTLVMGYALAGKPDIALHLFGKMR 158 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------~~li~~~~~~~~~~~A~~~~~~m~ 158 (806)
++..+..++..+.+.|+.+.|.+.++.+.+.. |.+.... ..+...+.+.|++++|++.|+.+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 56778888899999999999999999998864 2232222 233446888999999999999998
Q ss_pred hcCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCC--H
Q 047492 159 FQGMDLDDY-AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVS--G 235 (806)
Q Consensus 159 ~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~ 235 (806)
+.+ .|+.. ............|+.++|++.++++.+..+.+...+..+...+...|+.++|.+.++++.+...... .
T Consensus 140 ~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 140 NGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred cCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 652 22321 1111111222458999999999999999888888899999999999999999999999876432110 0
Q ss_pred H-----------------hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 236 F-----------------MIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 236 ~-----------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
. .+...+..+-.....+.|...+...... ...|... .......+...|++++|+..|++..
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~-~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ-LADPAFR-ARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh-ccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0 1111111111222234444555444332 2222211 1223455667788888888888876
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhH------------HHHHHHHHHcCChHHHHHHH
Q 047492 299 SLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISP-DGVTM------------NTVLCFFCKAGMVDVAIELY 365 (806)
Q Consensus 299 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~------------~~ll~~~~~~g~~~~a~~~~ 365 (806)
.. .+.+...+..+...+.+.|++++|+..|++..+..... +...+ ......+.+.|++++|+..|
T Consensus 297 ~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 297 RA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 52 12245667777788888888888888888877643211 11111 11233556778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--
Q 047492 366 KSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNI-- 443 (806)
Q Consensus 366 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 443 (806)
+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...+. .++.++|..+++.+.....
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH
Confidence 8877653 334566667777888888888888888887765322 3445555555553 4567777777765432210
Q ss_pred ------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047492 444 ------KLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTR 517 (806)
Q Consensus 444 ------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (806)
......+..+...+...|++++|.+.+++..+..+. +...+..+...|.+.|++++|...++++.+. .|+
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~- 527 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPN- 527 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-
Confidence 011123445666777788888888888887776655 6666777777888888888888888887652 332
Q ss_pred HhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHH
Q 047492 518 ALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSY 597 (806)
Q Consensus 518 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 597 (806)
++..+..+...+...++.++|...++.+......++......-+
T Consensus 528 ---------------------------------~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l--- 571 (1157)
T PRK11447 528 ---------------------------------DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL--- 571 (1157)
T ss_pred ---------------------------------CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH---
Confidence 22233333334456778888888887765332222211100000
Q ss_pred HhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch
Q 047492 598 LKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF 677 (806)
Q Consensus 598 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 677 (806)
....+..+...+...|++++|..+++. .+.+...+..+...+.+.|++++|++.++.+.+..+ .+..
T Consensus 572 -------~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~ 638 (1157)
T PRK11447 572 -------QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNAD 638 (1157)
T ss_pred -------hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH
Confidence 000134567788899999999999872 244556677788899999999999999999998754 3556
Q ss_pred hHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCC--C---ChhhHHHHH
Q 047492 678 IGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFP--L---DTYTYNILL 752 (806)
Q Consensus 678 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---~~~~~~~li 752 (806)
....+...+...|+..+|...++.+....|.+...+..+..++...|+.++|.++++++...... | +...+..+.
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 77788888999999999999999988777778888888999999999999999999999885321 1 123555667
Q ss_pred HHHhh-hcHHHHHHHHHHHHH-cCCCC
Q 047492 753 RRLSV-SEIDHACELFNRMRR-KGYEP 777 (806)
Q Consensus 753 ~~~~~-g~~~~A~~~~~~m~~-~g~~p 777 (806)
..+.. |++++|+..|++... .|+.|
T Consensus 719 ~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 719 RFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 77778 999999999999863 34543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-21 Score=214.38 Aligned_cols=631 Identities=11% Similarity=0.024 Sum_probs=341.9
Q ss_pred HhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHH
Q 047492 107 HCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVA 186 (806)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 186 (806)
...|+++.|...|+...+.. |.+..++..+...|.+.|++++|+..+++..+. .|+...|..++..+ +++++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 34488888888888887753 445788888888888889988998888888876 56555555544333 8888888
Q ss_pred HHHHHHHhcCCCCccchHHHHHH--------hhccCCHHHHHHHHHHhHhCCCCCCHHhHHHH-HHHHHhcCCHHHHHHH
Q 047492 187 VVSKQISMRGFENDVTRTIMLKC--------LCKQKKIDEAVEYFQQLVSGRECVSGFMIGIV-VDALCKNSRFEQAGKL 257 (806)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~ 257 (806)
.+++++....+.+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+++
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 88888888888777777766665 5555 44555444 3333333344444444 7888888888888888
Q ss_pred HHHhhhCCCCCcchhhHHHHHHHHHH-cCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047492 258 LEDFKDRDDVVKLEKAYDVWLRNLVR-AGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEG 336 (806)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 336 (806)
+.++.+. + +.+..-...+-..|.. .++ +++..+++. ....+...+..+...+.+.|+.++|.++++++...
T Consensus 205 L~~L~k~-~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~-----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 205 YNEARQQ-N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ-----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHhc-C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch-----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 8888876 2 2333445556667776 356 777776442 22356777888888888888888888888887654
Q ss_pred CCC-CChhhHHHHHHHHHHcCChH-HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 047492 337 QIS-PDGVTMNTVLCFFCKAGMVD-VAIELYKSRSEFGLSPNG-IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKK 413 (806)
Q Consensus 337 g~~-~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 413 (806)
-.. |+..++--+ +.+.+... .|..-|.. + ..++. ...-.++..+.+.++++.+.++.. +.|...
T Consensus 277 ~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 343 (987)
T PRK09782 277 FTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANE 343 (987)
T ss_pred ccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcch
Confidence 222 333333332 23333321 01111110 0 00111 112223555566666665544421 122222
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhc--CCCCCHHHHHHHH
Q 047492 414 TLSILADALC--RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM--NKVASENTYIQLI 489 (806)
Q Consensus 414 ~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li 489 (806)
. ..+.... ..+...++...+..|.+.. +-+......+.-...+.|+.++|.++++..... +..++.....-++
T Consensus 344 ~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 344 M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 2 1222111 2234444444444444432 223333334444445566666666666655442 1111333344555
Q ss_pred HHHHhcCC---HHHHHHH----------------------HHHHHHC-CCCC---CHHhHHHHHHHHHccCCcHHHHHHH
Q 047492 490 HGFNKSNR---ADIAARL----------------------LVEMEEN-GHKP---TRALHRAVIRCLCNMETPAKQFLQL 540 (806)
Q Consensus 490 ~~~~~~~~---~~~a~~~----------------------~~~m~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~~~~~ 540 (806)
..|.+.+. ..++..+ +...... +..| +...+..+-.++.. +...+++..+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 55555554 2222222 1111110 1112 23333333333333 3323322222
Q ss_pred HHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC
Q 047492 541 LNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM 620 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 620 (806)
.+.. ... |+......+...+...|++++|...|+++... .|+... +..+...+.+.|
T Consensus 500 ~~Al-~~~-Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a-------------------~~~la~all~~G 556 (987)
T PRK09782 500 LQAE-QRQ-PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNED-------------------LLAAANTAQAAG 556 (987)
T ss_pred HHHH-HhC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHH-------------------HHHHHHHHHHCC
Confidence 2222 111 22222222333334566666666666665432 222222 445555666666
Q ss_pred ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHH
Q 047492 621 KANLAWGFMREMRHNGMYPS-MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRL 699 (806)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 699 (806)
++++|...++...+.+ |+ ...+..+...+.+.|++++|...+++..+..+ +...+..+...+.+.|+.++|...+
T Consensus 557 d~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 557 NGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666666532 22 22222232333345667777766666665543 3445555666666666777777766
Q ss_pred HhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC
Q 047492 700 RGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD 778 (806)
Q Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~ 778 (806)
+++....|.+...++.+..++...|+.++|+..++++.+. .|.+...+..+..++.. |++++|...|++.... .|+
T Consensus 633 ~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~ 709 (987)
T PRK09782 633 RAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDN 709 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 6666666666666666666666666667776666666664 24445566666666666 6677776666666643 333
Q ss_pred h-hhHHHHHhhhhccCCHHHHHHHH
Q 047492 779 Q-WTFDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 779 ~-~~~~~l~~~~~~~g~~~eA~~~l 802 (806)
. .+.........+..+++.|.+-+
T Consensus 710 ~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 710 QALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHH
Confidence 3 23333444455555555555433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-19 Score=198.48 Aligned_cols=655 Identities=12% Similarity=0.038 Sum_probs=441.2
Q ss_pred CCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHH
Q 047492 72 KTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIAL 151 (806)
Q Consensus 72 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 151 (806)
..+++..|+..|+-+.... +.+...+..+.+.+.+.|+++.|...++...+.. +.+...+..+ ..+ +++.+|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHH
Confidence 3478889999999885433 2247888999999999999999999999998852 3444444444 323 9999999
Q ss_pred HHHHHHhhcCCCCC-hhhHHHHHHH--------HHhcCCcchHHHHHHHHHhcCC-CCccchHH-HHHHhhccCCHHHHH
Q 047492 152 HLFGKMRFQGMDLD-DYAYHVLLNA--------LVEQGCFDAVAVVSKQISMRGF-ENDVTRTI-MLKCLCKQKKIDEAV 220 (806)
Q Consensus 152 ~~~~~m~~~~~~p~-~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~-li~~~~~~g~~~~a~ 220 (806)
.+|+++... .|+ ..++..+... |.+. ++|.+.++ .....+ |+..+... +...|.+.|++++|.
T Consensus 129 ~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 129 TTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 999999887 554 3444444444 4444 55555555 322222 23444444 489999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 221 EYFQQLVSGRECVSGFMIGIVVDALCK-NSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
+++.++.+.++ .+......|..+|.. .++ +.+..+++. ...-+...+..+...|.+.|+.++|.++++++..
T Consensus 203 ~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~-----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 203 TLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ-----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch-----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999876 445667777778887 366 777777542 3346778899999999999999999999999865
Q ss_pred cCCCCCCcccHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 047492 300 LEGYVPEVFRFNFLVSRLLKENRLM-EVFDLFMDMKEGQISPDG-VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNG 377 (806)
Q Consensus 300 ~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 377 (806)
...-.|+..++--. +.+.+... .+..-|.+ ...++. .....++..+.+.++++.++++.. +.|..
T Consensus 276 ~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 342 (987)
T PRK09782 276 LFTTDAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPAN 342 (987)
T ss_pred cccCCCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcc
Confidence 33333555444433 34444332 11111111 011111 112233677778888886665522 23333
Q ss_pred HHHHHHHHH--HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHH
Q 047492 378 IVYNYLINS--LCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALER--NIKLRDVTYDKF 453 (806)
Q Consensus 378 ~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l 453 (806)
... .+.. ....+...++.+.++.|.+.... +....-.+--...+.|+.++|.++++..... +-.++.....-+
T Consensus 343 ~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 343 EML--EERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred hHH--HHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 321 2222 22345666676667777665221 4444444444556778888888888877652 123344455567
Q ss_pred HHHHHhcCCh---hHHHHH----------------------HHHHhhc-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 047492 454 ISALCKANKV---EVGYLI----------------------HSELSRM-NK-VA--SENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 454 l~~~~~~~~~---~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
+..|.+.+.+ .++..+ ++..... .. .+ +...|..+..++.. ++.++|+..
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a 498 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYA 498 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHH
Confidence 7777766552 222222 1111111 11 22 56677888877776 899999998
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc
Q 047492 505 LVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV 584 (806)
Q Consensus 505 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 584 (806)
+.+... ..|+......+...+...++...+...+.+ ... .+++...+..+...+.+.|+.++|...+++..+..
T Consensus 499 ~~~Al~--~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk-a~~-~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-- 572 (987)
T PRK09782 499 WLQAEQ--RQPDAWQHRAVAYQAYQVEDYATALAAWQK-ISL-HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-- 572 (987)
T ss_pred HHHHHH--hCCchHHHHHHHHHHHHCCCHHHHHHHHHH-Hhc-cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--
Confidence 888877 357765544555555677885444444433 333 34455556777888899999999999999998653
Q ss_pred cCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 585 PQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVM 664 (806)
Q Consensus 585 p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 664 (806)
|+... .+..+...+...|++++|...+++..+ +.|+...|..+..++.+.|++++|...+
T Consensus 573 P~~~~------------------l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 573 LGDNA------------------LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CccHH------------------HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 54422 133344445566999999999999998 5677888999999999999999999999
Q ss_pred HHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC
Q 047492 665 NHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD 744 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 744 (806)
+......+ .+...++.+...+...|+.++|...++++....|.+...+..+..+|...|++++|+..++++.+. .|+
T Consensus 633 ~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~ 709 (987)
T PRK09782 633 RAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDN 709 (987)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 99988853 345677778888999999999999999999999999999999999999999999999999999986 454
Q ss_pred h-hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCC
Q 047492 745 T-YTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLR 794 (806)
Q Consensus 745 ~-~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 794 (806)
. .+.......... .+++.|.+-+.+-.. +.|+..+-......+...|+
T Consensus 710 ~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~a~~~~g~~~~~~~~ 759 (987)
T PRK09782 710 QALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSSIGLRSGAMSTANNN 759 (987)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccchhccccchHhhhccc
Confidence 4 445455555666 778888887776654 45555544344444444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-17 Score=172.09 Aligned_cols=642 Identities=12% Similarity=0.027 Sum_probs=432.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHhHhc------cCCc-chhHHHHHHHHHHhc-----------CChhhHHHHHHHHh
Q 047492 97 ATFHAIFKLLHCAKLTPLMVDFLENYKKD------RYYH-QVRFNDTLVMGYALA-----------GKPDIALHLFGKMR 158 (806)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~------~~~~-~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~ 158 (806)
..|..+...+.+.|..+++..+++.-... ++.. -...++.+...|+.. ..+..|..+|+...
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 35666777788899999999998887622 1111 111222222223222 12334555555554
Q ss_pred hcCCCCChhhHHHHHHHHHhcCC--cchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCC--CCCC
Q 047492 159 FQGMDLDDYAYHVLLNALVEQGC--FDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGR--ECVS 234 (806)
Q Consensus 159 ~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~ 234 (806)
.....-++. +..--..|...|. ++.|...|..+.+..+++...+..-.......|++..|..+|......+ ..+|
T Consensus 122 ki~m~~~~~-l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD 200 (1018)
T KOG2002|consen 122 KIDMYEDSH-LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD 200 (1018)
T ss_pred HhhccCcch-hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC
Confidence 331111111 1111112333443 5889999999998877776665555555567889999999999966543 3344
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcch-hhHHHHHHHHHH---cCCHHHHHHHHHhhhhcCCCCCCcccH
Q 047492 235 GFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLE-KAYDVWLRNLVR---AGRLDLALEFLKSKNSLEGYVPEVFRF 310 (806)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 310 (806)
+.+ .+..++.+.|+.+.|+..|.+..+. .|+. .++..|.-.-.. ...+..++.++...-... .-+++..
T Consensus 201 ~rI--gig~Cf~kl~~~~~a~~a~~ralqL---dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l 273 (1018)
T KOG2002|consen 201 VRI--GIGHCFWKLGMSEKALLAFERALQL---DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVAL 273 (1018)
T ss_pred ccc--hhhhHHHhccchhhHHHHHHHHHhc---ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHH
Confidence 322 3345677999999999999998865 3422 222222211112 234566667666655322 3456778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 047492 311 NFLVSRLLKENRLMEVFDLFMDMKEGQIS--PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNG--IVYNYLINS 386 (806)
Q Consensus 311 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~ 386 (806)
+.|.+.|.-.|++..+..+...+...-.. .-...|-.+.++|-..|++++|...|.+..+.. ++. ..+-.+.+.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm 351 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQM 351 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHH
Confidence 88999999999999999999988875321 123457778899999999999999998877643 443 455567889
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047492 387 LCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDG----KFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK 462 (806)
Q Consensus 387 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 462 (806)
|.+.|+.+.+...|+...+... -+..|...+...|...+ ..+.|..++....+.. +.|...|-.+...+-...-
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh
Confidence 9999999999999999987632 25556666666666664 4577777777776654 5666777777777665444
Q ss_pred hhHHHHHHHH----HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHhHHHHHHHHHccCCcHH
Q 047492 463 VEVGYLIHSE----LSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN---GHKPTRALHRAVIRCLCNMETPAK 535 (806)
Q Consensus 463 ~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~ 535 (806)
+ .+..++.. +...+..+.+...|.+...+...|++.+|...|.+.... ...+|.
T Consensus 430 ~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de------------------ 490 (1018)
T KOG2002|consen 430 W-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE------------------ 490 (1018)
T ss_pred H-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc------------------
Confidence 3 33555543 334555578889999999999999999999999998764 111111
Q ss_pred HHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHH
Q 047492 536 QFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVG 615 (806)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 615 (806)
+..++..+--.+...+-..++.+.|.+.|..+.+. .|+.+. .|--++..
T Consensus 491 -----------~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId------------------~ylRl~~m 539 (1018)
T KOG2002|consen 491 -----------GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID------------------AYLRLGCM 539 (1018)
T ss_pred -----------cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH------------------HHHHhhHH
Confidence 01122222222334445567889999999998854 465543 24334322
Q ss_pred HHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC-CCCchhHHHHHHHhhc-----
Q 047492 616 LCKAMKANLAWGFMREMRHN-GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGR-QVTSFIGNTLLLHALK----- 688 (806)
Q Consensus 616 ~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----- 688 (806)
....++..+|...+++.... ...|+ .+..+...+.+...+.-|.+-++.+.+.-. .+|++..-.|...+.+
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~np~--arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSSNPN--ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccCCcH--HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 22346778888888887763 33344 444455577777788888886666654433 2466666556554442
Q ss_pred -------cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcH
Q 047492 689 -------TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEI 760 (806)
Q Consensus 689 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~ 760 (806)
.+..+.|+..|.+++...|.+...-|-+.-.++.+|++.+|+.+|.++.+.. ..+..+|-.+..+|.- |++
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999974 3466788899999999 999
Q ss_pred HHHHHHHHHHHHc-CCCCChhhHHHHHhhhhccCCHHHHHHHHH
Q 047492 761 DHACELFNRMRRK-GYEPDQWTFDILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 761 ~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~ 803 (806)
..|+++|+..... +.+-+......|.+++.++|.+.+|++.+.
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999997766 445677788899999999999999998764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-16 Score=163.49 Aligned_cols=569 Identities=12% Similarity=0.013 Sum_probs=375.7
Q ss_pred chhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhc--cCCcchhHHHHHHHHHHhcCChhhHHHH
Q 047492 76 VLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKD--RYYHQVRFNDTLVMGYALAGKPDIALHL 153 (806)
Q Consensus 76 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~ 153 (806)
...|..-|.++.++.+ .+.-.+-.-..+....+++..+..++...... ..++++.+ .+-..+.+.|+.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHH
Confidence 4567777887766542 24444444455666778888898888885544 34455544 344667788999999999
Q ss_pred HHHHhhcCCCCChhhHHHHHHHH---Hh---cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhH
Q 047492 154 FGKMRFQGMDLDDYAYHVLLNAL---VE---QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLV 227 (806)
Q Consensus 154 ~~~m~~~~~~p~~~~~~~ll~~~---~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 227 (806)
|++..+. .| ...++++... .. ...+..+..++...-.....++...+.|...|.-.|+++.+.++.+.+.
T Consensus 222 ~~ralqL--dp--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 222 FERALQL--DP--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHhc--Ch--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9999877 33 3233322211 11 2235567777777777777788899999999999999999999998887
Q ss_pred hCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcch--hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCC
Q 047492 228 SGREC--VSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLE--KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGY 303 (806)
Q Consensus 228 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 303 (806)
..... .-...|-.+..+|...|++++|...|.+.... .++. ..+.-+...+.+.|+++.+...|+.+...
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--- 371 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--- 371 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh---
Confidence 65421 12345778889999999999999999877654 3333 34556778899999999999999988752
Q ss_pred CCC-cccHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH----hCCCC
Q 047492 304 VPE-VFRFNFLVSRLLKEN----RLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRS----EFGLS 374 (806)
Q Consensus 304 ~~~-~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~ 374 (806)
.|| ..+...+-..|...+ ..+.|..++.+..+.- +.|...|-.+-..+-. ++...++..|.... ..+-.
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ 449 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ 449 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC
Confidence 344 445555555555543 4566777777666643 3466677666666654 44444466665533 34445
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047492 375 PNGIVYNYLINSLCGDGSTHEAYEVLKNSIDH---GLFPGK------KTLSILADALCRDGKFEQMKDLVIFALERNIKL 445 (806)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (806)
+-....|.+.......|++++|...|+..... ...+|. .+--.+...+-..++.+.|.+.++.+.+.. +.
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~ 528 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PG 528 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-ch
Confidence 77788899999999999999999999887754 122222 223335555666778999999999988764 22
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHH
Q 047492 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN-GHKPTRALHRAVI 524 (806)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll 524 (806)
-...|-.+....-..+...+|...++.....+.. ++..+..+...+.+..++..|.+-|+...+. ...+|..+..++-
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 3334444443333446788888888888776555 7778888888888888898888877776653 2235666655555
Q ss_pred HHHHc----cCC-c------HHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC-ccCcchhHH
Q 047492 525 RCLCN----MET-P------AKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL-VPQLGSNIL 592 (806)
Q Consensus 525 ~~~~~----~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ 592 (806)
..+.. ..+ . ...+..+........+.|...-|-+.-.++..|++.+|..+|.+.++... .++.
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv----- 682 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV----- 682 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCce-----
Confidence 43322 111 1 12222333444555566666667777777777777777777777776543 2222
Q ss_pred HHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 047492 593 MLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN-GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHG 671 (806)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 671 (806)
|-.+..+|...|+|..|+++|+...+. .-..+......|.+++.+.|.+.+|.+.+.......
T Consensus 683 ----------------~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 683 ----------------WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred ----------------eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 667777777777777777777765553 444466667777777777777777777777766665
Q ss_pred CCCCchhHHHHH
Q 047492 672 RQVTSFIGNTLL 683 (806)
Q Consensus 672 ~~~~~~~~~~l~ 683 (806)
+......+|..+
T Consensus 747 p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 747 PSNTSVKFNLAL 758 (1018)
T ss_pred CccchHHhHHHH
Confidence 555555555543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-19 Score=173.15 Aligned_cols=432 Identities=13% Similarity=0.022 Sum_probs=307.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC
Q 047492 136 TLVMGYALAGKPDIALHLFGKMRFQGMDLD-DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK 214 (806)
Q Consensus 136 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 214 (806)
.|..-.-+.|++++|.+-....-+. .|+ ....-.+-..+.+..+.+.....-....+..+.-..+|..+...+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 4444555677777777766665444 221 1122222223344445554444444444444455667888888888888
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHH-HHHHHcCCHHHHHHH
Q 047492 215 KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWL-RNLVRAGRLDLALEF 293 (806)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~ 293 (806)
++++|..+++.+++... .....|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+ ..+-..|++++|...
T Consensus 131 ~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 88888888888877654 4556777788888888888888888877664 355544333322 333446788888887
Q ss_pred HHhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 047492 294 LKSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD-GVTMNTVLCFFCKAGMVDVAIELYKSRSEF 371 (806)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 371 (806)
+.+..+ ..|. ...|+.|-..+-.+|+...|+..|++..+. .|+ ...|-.|-..|...+.++.|...|.+....
T Consensus 207 YlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 207 YLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 777654 2343 566777888888888888999888888774 343 446777788888888888888888876653
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 047492 372 GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYD 451 (806)
Q Consensus 372 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (806)
. +.....+..|...|...|+.+.|+..+++..+.... -...|+.|..++-..|++.+|.+.+...+... +......+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 2 234567777777888889999999999988876433 35678889999988999999999998888765 44556777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 047492 452 KFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNME 531 (806)
Q Consensus 452 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 531 (806)
.|...|...|.+++|..+|....+-.+. -....+.|...|.+.|++++|+..|++.+. ++|+.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f-------------- 421 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF-------------- 421 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH--------------
Confidence 8888999999999999988887765433 345678888889999999999999998876 66652
Q ss_pred CcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHH
Q 047492 532 TPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNT 611 (806)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (806)
...|+.+.+.|...|+.+.|.+.+.+.+ .+.|...- +++.
T Consensus 422 --------------------Ada~~NmGnt~ke~g~v~~A~q~y~rAI--~~nPt~Ae------------------AhsN 461 (966)
T KOG4626|consen 422 --------------------ADALSNMGNTYKEMGDVSAAIQCYTRAI--QINPTFAE------------------AHSN 461 (966)
T ss_pred --------------------HHHHHhcchHHHHhhhHHHHHHHHHHHH--hcCcHHHH------------------HHhh
Confidence 3456667777888888999998888877 45565443 4788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNGMYPS 640 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 640 (806)
|.+.|-..|++.+|++-|++..+ ++||
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 88899999999999999988887 5665
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-18 Score=171.28 Aligned_cols=446 Identities=15% Similarity=0.089 Sum_probs=355.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 047492 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248 (806)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (806)
-..+..-..+.|++.+|++....+-..++.+......+-..+.+..+.+....--....+... .-..+|+.+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHh
Confidence 344555566889999999998888877776666666666677777777766554444433332 4567899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHH-HHHHhcCCHHHHH
Q 047492 249 SRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLV-SRLLKENRLMEVF 327 (806)
Q Consensus 249 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~ 327 (806)
|++++|+..++.+.+. .+-....|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+ +.+-..|++++|.
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999874 233567899999999999999999999998865 567766555444 3444579999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 047492 328 DLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPN-GIVYNYLINSLCGDGSTHEAYEVLKNSIDH 406 (806)
Q Consensus 328 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 406 (806)
..+.+..+... -=...|+.|...+-..|+...|+..|++..+. .|+ ...|-.|-..|...+.++.|...+.+....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 99888776421 23567888888888999999999999998874 455 457888889999999999999999887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 047492 407 GLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYI 486 (806)
Q Consensus 407 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 486 (806)
... ....+..+...|...|.++.|...+++.++.. +.-...|+.|..++-..|++.+|+..+.......+. .....+
T Consensus 282 rpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~ 358 (966)
T KOG4626|consen 282 RPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMN 358 (966)
T ss_pred CCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHH
Confidence 322 45567778888899999999999999998875 344578999999999999999999999998877655 667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCC
Q 047492 487 QLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVK 566 (806)
Q Consensus 487 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 566 (806)
.|...|...|.+++|..+|....+ +.|. -...+|.+...|...|
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~----------------------------------~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPE----------------------------------FAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChh----------------------------------hhhhhhhHHHHHHhcc
Confidence 899999999999999999998876 4443 1334677888899999
Q ss_pred ChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHH
Q 047492 567 RPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS-MECYE 645 (806)
Q Consensus 567 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~ 645 (806)
+.++|..-|++.. .+.|+..- +|+.+...|-..|+.+.|++.+.+.+. ++|. ...++
T Consensus 403 nl~~Ai~~Ykeal--rI~P~fAd------------------a~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhs 460 (966)
T KOG4626|consen 403 NLDDAIMCYKEAL--RIKPTFAD------------------ALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHS 460 (966)
T ss_pred cHHHHHHHHHHHH--hcCchHHH------------------HHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHh
Confidence 9999999999998 66887664 588999999999999999999999887 6775 45677
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHH
Q 047492 646 ELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL 684 (806)
Q Consensus 646 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 684 (806)
.|...|-.+|++.+|++-++..++..+......+|.+.-
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 888899999999999999999998876655555565543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=183.51 Aligned_cols=302 Identities=14% Similarity=0.033 Sum_probs=219.8
Q ss_pred HhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCc--chhhHHHHHHHHHHcCC
Q 047492 209 CLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVK--LEKAYDVWLRNLVRAGR 286 (806)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 286 (806)
.+...|++++|...|+++.+.++ .+..++..+...+...|++++|..+++.+.......+ ....+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34556667777777777766543 3445666677777777777777777776665411111 12456666777777777
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChHHHH
Q 047492 287 LDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDG----VTMNTVLCFFCKAGMVDVAI 362 (806)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~ 362 (806)
+++|+.+|+++.+. ...+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777642 2345667777788888888888888888888775433221 23455667778889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 363 ELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..+..+|...|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998887643 334567777888889999999999999998876433334567888889999999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 047492 443 IKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK---SNRADIAARLLVEMEENGHKPTRA 518 (806)
Q Consensus 443 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~ 518 (806)
|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.++++|.+.+++|++.
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55566788889999999999999999988766 4677788888877765 558899999999999888777765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-18 Score=181.65 Aligned_cols=296 Identities=15% Similarity=0.091 Sum_probs=135.6
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHhcCCHHHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVS---GFMIGIVVDALCKNSRFEQAG 255 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 255 (806)
.|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++++|+
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 33444444444444443333333344444444444444444444444433221111 123344444444444444444
Q ss_pred HHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 256 KLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE---VFRFNFLVSRLLKENRLMEVFDLFMD 332 (806)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~ 332 (806)
.+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.......+. ...+..+...+.+.|++++|.+.|++
T Consensus 128 ~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 128 ELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444444432 1223334444444444444444444444444331110000 01223344444555555555555555
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 047492 333 MKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412 (806)
Q Consensus 333 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 412 (806)
+.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|.+.++++.+. .|+.
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 282 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGA 282 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 55432 11233444455555555556666655555554321111234555555555666666666666555544 2344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHhhcCCCCC
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK---ANKVEVGYLIHSELSRMNKVAS 481 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~ 481 (806)
..+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++.+.+.++.|+
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 44455555555566666666666555543 3555555555555443 3355555555555555444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-14 Score=151.37 Aligned_cols=645 Identities=12% Similarity=-0.003 Sum_probs=319.8
Q ss_pred CCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047492 109 AKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVV 188 (806)
Q Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 188 (806)
.|+++.|..++.+..+. .+.....|..|...|-..|+.++++..+-...-.+ +-|..-|..+.....+.|.+++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 35555555555444442 23344445555555555555555544443332221 11334444444444455555555555
Q ss_pred HHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 047492 189 SKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVV 268 (806)
Q Consensus 189 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 268 (806)
|.+..+..+++...+-.-...|-+.|+...|...|.++....++.|..-+..+
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~--------------------------- 282 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL--------------------------- 282 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH---------------------------
Confidence 55555544444444444444444555555555555555444332222211111
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------
Q 047492 269 KLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQ----------- 337 (806)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----------- 337 (806)
...+++.+...++-+.|.+.++......+-..+...++.++..+.+...++.+......+....
T Consensus 283 -----i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 283 -----IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred -----HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 1222333333444444444444443322223333444444444444444444444444433311
Q ss_pred ----------------CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCChhHHHHH
Q 047492 338 ----------------ISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL--SPNGIVYNYLINSLCGDGSTHEAYEV 399 (806)
Q Consensus 338 ----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 399 (806)
+.++... --++-++.+....+...-+.....+..+ .-+...|.-+..+|.+.|++.+|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111111 0111222233333333333333333332 22334555555666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhc---
Q 047492 400 LKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM--- 476 (806)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 476 (806)
|..+......-+...|-.+..+|...|..+.|.+.++..+... +.+...-..|...+-+.|+.++|.+.+..+..-
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 6665544333345555566666666666666666666655543 333344445555555666666666665554311
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHhHHHHHHHHHc
Q 047492 477 -----NKVASENTYIQLIHGFNKSNRADIAARLLVEMEENG----------------------HKPTRALHRAVIRCLCN 529 (806)
Q Consensus 477 -----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------------------~~p~~~~~~~ll~~~~~ 529 (806)
...|+..........+.+.|+.++-+.+..+|+... ..-...+...++.+..+
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k 595 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK 595 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc
Confidence 112223333334445555555555444444433211 11111222222222222
Q ss_pred cCCcHHHHHHH------HHhHhhCCCCCh--hhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhh
Q 047492 530 METPAKQFLQL------LNMQLSHQETNF--QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRK 601 (806)
Q Consensus 530 ~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~ 601 (806)
.++.......+ .-....+..-+. ..+.-++..+++.+++++|+.+...+......-...--...
T Consensus 596 ~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~-------- 667 (895)
T KOG2076|consen 596 ATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKE-------- 667 (895)
T ss_pred cCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHH--------
Confidence 22210000000 000001111111 22455677888999999999998888764322111100000
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC-CC--CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch
Q 047492 602 NGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN-GM--YPS-MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF 677 (806)
Q Consensus 602 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 677 (806)
.=...+.+++..+++..|...++.|... +. .|. ...|+..++...+.|+-.--...+..+.......+..
T Consensus 668 ------l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~ 741 (895)
T KOG2076|consen 668 ------LQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPP 741 (895)
T ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcc
Confidence 1235667788899999999999999874 22 222 2345555666666665554455555544444333344
Q ss_pred hHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhh----------ccccchhhHHHHHHHHHcCCC-CChh
Q 047492 678 IGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS----------GCIKVSQDIEGLQKMIEQCFP-LDTY 746 (806)
Q Consensus 678 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~-~~~~ 746 (806)
.+.........++.+..|...+-.+....|.++.+--.+.-+|. ++-....++..+.+..+.... .-..
T Consensus 742 l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QE 821 (895)
T KOG2076|consen 742 LALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQE 821 (895)
T ss_pred eeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 44444455668889999999888888777776666555544442 222333456666666554222 1344
Q ss_pred hHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC----CCh--------hhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 747 TYNILLRRLSV-SEIDHACELFNRMRRKGYE----PDQ--------WTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 747 ~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~----p~~--------~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
.+-.+.++|.. |-.--|...|++....... |.. ..|| |.-.|.++|+..-|..++++
T Consensus 822 a~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~N-L~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 822 AFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYN-LHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhh-hhhhhccCCcHHHHHHHHHh
Confidence 55567899999 9999999999998854211 111 1344 66679999999999999875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-16 Score=173.53 Aligned_cols=434 Identities=12% Similarity=-0.036 Sum_probs=305.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhcc
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQ 213 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 213 (806)
+......|.+.|++++|+..|++.... .|++..|..+..+|.+.|++++|++.++...+..+.+..++..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445567788899999999999998865 678888999999999999999999999999998877888999999999999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH
Q 047492 214 KKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEF 293 (806)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (806)
|++++|...|......+...+.. ...++.-+........+...++. . +++...+..+. .+...........-
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~---~---~~~~~~~~~~~-~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILET---K---PENLPSVTFVG-NYLQSFRPKPRPAG 279 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhc---C---CCCCCCHHHHH-HHHHHccCCcchhh
Confidence 99999999887665543322222 12222222111112222222221 1 12222222222 22222111111111
Q ss_pred HHhhhhcCCCCCCc-ccHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 047492 294 LKSKNSLEGYVPEV-FRFNFLVSR---LLKENRLMEVFDLFMDMKEGQ-ISP-DGVTMNTVLCFFCKAGMVDVAIELYKS 367 (806)
Q Consensus 294 ~~~~~~~~~~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 367 (806)
+.... ...++. ..+..+... ....+++++|.+.|++..+.+ ..| +...++.+...+...|++++|...|+.
T Consensus 280 ~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 280 LEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111 111211 111111111 123478999999999998765 223 455678888888899999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047492 368 RSEFGLSPN-GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLR 446 (806)
Q Consensus 368 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 446 (806)
..+. .|+ ...|..+...+...|++++|...|++..+.... +..+|..+...+...|++++|...|++.++.. +.+
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 8875 354 568888889999999999999999999876433 67788889999999999999999999998876 456
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHH
Q 047492 447 DVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA-LHRAVIR 525 (806)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~ 525 (806)
...+..+...+.+.|++++|...++...+..+. +...|+.+...+...|++++|++.|++..+. .|+.. ++..+.
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~- 508 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVL- 508 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHH-
Confidence 677888889999999999999999998876544 7888999999999999999999999998873 33211 100000
Q ss_pred HHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCC
Q 047492 526 CLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIP 605 (806)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~ 605 (806)
..++..+..+...|++++|.+++++.... .|+...
T Consensus 509 ---------------------------~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~---------------- 543 (615)
T TIGR00990 509 ---------------------------PLINKALALFQWKQDFIEAENLCEKALII--DPECDI---------------- 543 (615)
T ss_pred ---------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHH----------------
Confidence 01122222334468999999999998754 455432
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047492 606 RKLYNTLIVGLCKAMKANLAWGFMREMRHN 635 (806)
Q Consensus 606 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 635 (806)
++..+...+.+.|++++|+..|++..+.
T Consensus 544 --a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 --AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred --HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4788999999999999999999998763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-17 Score=180.97 Aligned_cols=424 Identities=13% Similarity=0.045 Sum_probs=325.0
Q ss_pred hhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC
Q 047492 85 WAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL 164 (806)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 164 (806)
|+...+..+.++....-.+.+....|+.+.|.+++..... ..+.+...+..+..++.+.|++++|+.+|++..+. .|
T Consensus 4 ~~~~~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P 80 (765)
T PRK10049 4 WLRQALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EP 80 (765)
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 4433334566788888889999999999999999999876 23556667899999999999999999999998876 44
Q ss_pred -ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 047492 165 -DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVD 243 (806)
Q Consensus 165 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 243 (806)
+...+..+..++...|++++|...++++.+..+.+.. +..+..++...|+.++|...++++.+..+ .+...+..+..
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~ 158 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQ 158 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4566778888899999999999999999999887777 99999999999999999999999998765 35556667888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCcch------hhHHHHHHHHH-----HcCCH---HHHHHHHHhhhhcCCCCCCcc-
Q 047492 244 ALCKNSRFEQAGKLLEDFKDRDDVVKLE------KAYDVWLRNLV-----RAGRL---DLALEFLKSKNSLEGYVPEVF- 308 (806)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~- 308 (806)
.+...|..+.|++.++.... .|+. ......++... ..+++ ++|++.++.+.......|+..
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 88899999999999987654 2221 11222222222 22234 778888888875433334332
Q ss_pred cHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHH
Q 047492 309 RFN----FLVSRLLKENRLMEVFDLFMDMKEGQIS-PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSP---NGIVY 380 (806)
Q Consensus 309 ~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~ 380 (806)
.+. ..+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+.+..-.. .....
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 111 1134556779999999999999987632 332 22225678999999999999999987643111 13456
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCC-----------CCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047492 381 NYLINSLCGDGSTHEAYEVLKNSIDHGL-----------FPGK---KTLSILADALCRDGKFEQMKDLVIFALERNIKLR 446 (806)
Q Consensus 381 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 446 (806)
..+..++.+.|++++|.++++++.+... .|+. ..+..+...+...|+.++|.++++++.... +.+
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n 392 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGN 392 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 6677788999999999999999986531 2332 345567778889999999999999998875 666
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 047492 447 DVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRA 522 (806)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 522 (806)
...+..+...+...|++++|++.+++.....+. +...+..+...+...|++++|..+++++++ ..|+......
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~ 465 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 788999999999999999999999999887754 677778888899999999999999999998 4676554333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-15 Score=144.53 Aligned_cols=362 Identities=15% Similarity=0.174 Sum_probs=248.4
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047492 270 LEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVL 349 (806)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 349 (806)
+..+|.+||.++|+--..+.|.+++++... ...+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 445677777777777777777777777665 34467778888887654422 2277889999999999999999999
Q ss_pred HHHHHcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH-HHHHHHHHH----hCCCCC----CHHHHH
Q 047492 350 CFFCKAGMVDV----AIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHE-AYEVLKNSI----DHGLFP----GKKTLS 416 (806)
Q Consensus 350 ~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~----~~~~~p----~~~~~~ 416 (806)
.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++. .+..+| |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998765 56788889999999999999999999998888754 444444443 222322 455677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 047492 417 ILADALCRDGKFEQMKDLVIFALERN----IKLRD---VTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLI 489 (806)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 489 (806)
..+..|.+..+.+.|.++..-+.... +.|+. .-|..+....|.....+.-...|+.|.-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 88888888899999988877654431 22322 246678888889999999999999998877788888889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcC-CCh
Q 047492 490 HGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHV-KRP 568 (806)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 568 (806)
++....|.++-.-+++.+++..|..-....-..++.-+++..- .|+...-..+-...+++ -++
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~----------------hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL----------------HPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC----------------CCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998766655554444444444331 11111011111111110 111
Q ss_pred HH-HHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHHH
Q 047492 569 DL-ARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGM----YPSMEC 643 (806)
Q Consensus 569 ~~-a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~----~p~~~~ 643 (806)
.+ ....-.+|......|.. .+..+..+.+.|...+|.++|..+.+.+- .|....
T Consensus 505 ~e~~e~~~~R~r~~~~~~t~---------------------l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWPATS---------------------LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred HHHHHhhHHHHHhccCChhH---------------------HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 11 12223344444444433 67777788889999999999988865432 233344
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 047492 644 YEELIKLLCSTKNYDMVVGVMNHLEGHGRQ 673 (806)
Q Consensus 644 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (806)
...+++...+.++...|..+++-+...+..
T Consensus 564 m~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 564 MAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 456777777788888888888888766543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-16 Score=170.63 Aligned_cols=257 Identities=13% Similarity=0.026 Sum_probs=168.4
Q ss_pred cCChhHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 425 DGKFEQMKDLVIFALERN-I-KLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
.+++++|.+.|+...+.+ . +.....+..+...+...|++++|...++...+..+. +...|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 356667777777766653 1 223345666666667777777777777777665443 4556667777777777777777
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCC
Q 047492 503 RLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSG 582 (806)
Q Consensus 503 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 582 (806)
..|++..+. .| .++.+|..+...+...|++++|...|++..+.
T Consensus 386 ~~~~~al~~--~p----------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l- 428 (615)
T TIGR00990 386 EDFDKALKL--NS----------------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL- 428 (615)
T ss_pred HHHHHHHHh--CC----------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 777776552 22 23445666666677777777777777777643
Q ss_pred CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 583 LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVG 662 (806)
Q Consensus 583 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 662 (806)
.|+... .+..+...+.+.|++++|+..|++..+. .+.+...+..+..++...|++++|.+
T Consensus 429 -~P~~~~------------------~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 429 -DPDFIF------------------SHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred -CccCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 454332 2556667777778888888888777663 12245667777777777888888888
Q ss_pred HHHHHHhCCCCCCchhHH------HHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHH
Q 047492 663 VMNHLEGHGRQVTSFIGN------TLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKM 736 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 736 (806)
.++.........+....+ .....+...|++.+|...++++....|.+...+..++..|...|++++|+..|+++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 887777654432222111 11112223577778888777777666666667788888888888888888888888
Q ss_pred HHc
Q 047492 737 IEQ 739 (806)
Q Consensus 737 ~~~ 739 (806)
.+.
T Consensus 569 ~~l 571 (615)
T TIGR00990 569 AEL 571 (615)
T ss_pred HHH
Confidence 775
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-16 Score=170.98 Aligned_cols=335 Identities=12% Similarity=0.046 Sum_probs=236.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhcc
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQ 213 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 213 (806)
...++..+.+.|++++|+.+++........ +...+..++.+....|+++.|...++.+....+.+...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 345567777888888888888888776322 3345555556666788888888888888888887777888888888888
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH
Q 047492 214 KKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEF 293 (806)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (806)
|++++|...+++..+..+ .+...+..+...+...|++++|...++.+... . +.+...+..+ ..+...|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQE-V-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-C-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 888888888888887643 35567777888888888888888888877654 1 1122223222 346778888888888
Q ss_pred HHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH----HHHHHHHHH
Q 047492 294 LKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV----AIELYKSRS 369 (806)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~ 369 (806)
++.+..... .++...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++ |...|++..
T Consensus 200 ~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 200 ARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 887764211 1233344445567778888888888888877654 2356666777777888888775 678888777
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-H
Q 047492 370 EFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRD-V 448 (806)
Q Consensus 370 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~ 448 (806)
+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...++.+.+.+ |+. .
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 643 334567777788888888888888888887765432 45566667777788888888888888777654 332 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhcCCC
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSRMNKV 479 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 479 (806)
.+..+..++...|+.++|...|+...+..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 3334456677788888888888877766544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-15 Score=140.95 Aligned_cols=455 Identities=14% Similarity=0.108 Sum_probs=307.4
Q ss_pred cchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHh--cCCcc-hHHHHHHHHHhcCCCCccchHH
Q 047492 129 HQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVE--QGCFD-AVAVVSKQISMRGFENDVTRTI 205 (806)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~-~a~~~~~~~~~~~~~~~~~~~~ 205 (806)
..+.+=|.|+.. ...|..+++.-+|+.|++.|+..+...-..+++..+- +.++- .-.+.|-.|...|-.+..+|
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-- 190 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-- 190 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--
Confidence 344455555554 4568899999999999999888787777777665443 33332 23345556666665566666
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG 285 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (806)
+.|++.+ -+|+... .+..+|..||.++|+--..+.|.+++++-... ..+.+..+||.+|.+-.-..
T Consensus 191 ------K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred ------ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhc
Confidence 3454433 3333332 34578999999999999999999999998887 77888888998887655433
Q ss_pred CHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH-
Q 047492 286 RLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLME----VFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV- 360 (806)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~- 360 (806)
+ .+++.+|.. ....||..|||+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 257 ~----K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 257 G----KKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred c----HHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 3 667777776 6788999999999999999998765 67788899999999999999999999998887644
Q ss_pred HHHHHHHHHh----CCCC----CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhc
Q 047492 361 AIELYKSRSE----FGLS----PNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHG----LFPG---KKTLSILADALCRD 425 (806)
Q Consensus 361 a~~~~~~~~~----~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~---~~~~~~ll~~~~~~ 425 (806)
+..++.++.. ..++ .|...|...|..|....+.+-|.++-.-+.... +.|+ ..-|..+....|..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444432 2222 244567777888888888888888766554211 2232 23466777888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047492 426 GKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLL 505 (806)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 505 (806)
...+....+++.|+-.-+-|+..+...++++....|.++-.-+++..+...|...+... -++++
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil 475 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEIL 475 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHH
Confidence 89999999999998888888999999999999999999998899888877654322221 23344
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC-c
Q 047492 506 VEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL-V 584 (806)
Q Consensus 506 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~ 584 (806)
..|......|+...-..+-.+..+......+..+............+...+.++-.+.+.|+.++|.++|..+.+.+- .
T Consensus 476 ~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 476 MLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred HHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 444444444432211111111111111112222222222234455667788888889999999999999999865443 3
Q ss_pred cCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047492 585 PQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGM 637 (806)
Q Consensus 585 p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 637 (806)
|.... ..+...+++.-.+.+....|...++-|...++
T Consensus 556 p~~p~----------------lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 556 PRSPL----------------LNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCCcc----------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 43333 11133566667778888899999888866543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-16 Score=172.57 Aligned_cols=417 Identities=15% Similarity=0.035 Sum_probs=252.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 047492 312 FLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG 391 (806)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 391 (806)
-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+|++..+.. +.+...+..+...+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33444555666666666666655411 2233345556666666666666666666655432 223444555555666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047492 392 STHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHS 471 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 471 (806)
++++|...++++.+.... +.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...+..+.|...++
T Consensus 98 ~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 666666666666554221 333 5555555666666666666666666553 2333444445555555566666665555
Q ss_pred HHhhcCCCCCH------HHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHccCCcHHH
Q 047492 472 ELSRMNKVASE------NTYIQLIHGFNKS-----NRA---DIAARLLVEMEEN-GHKPTRALHRAVIRCLCNMETPAKQ 536 (806)
Q Consensus 472 ~~~~~~~~~~~------~~~~~li~~~~~~-----~~~---~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~~ 536 (806)
.... .|+. .....++...... +++ ++|+..++.+.+. ...|+... .
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~--~-------------- 235 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA--D-------------- 235 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch--H--------------
Confidence 4432 1110 0111111111111 112 3334444443321 11111000 0
Q ss_pred HHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc-cCcchhHHHHHHHHhhhCCCCchhHHHHHHH
Q 047492 537 FLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV-PQLGSNILMLQSYLKRKNGIPRKLYNTLIVG 615 (806)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 615 (806)
........+..+...|+.++|+..|+++.+.+-. |+.. -..+...
T Consensus 236 --------------~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a--------------------~~~la~~ 281 (765)
T PRK10049 236 --------------YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA--------------------QRWVASA 281 (765)
T ss_pred --------------HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH--------------------HHHHHHH
Confidence 0001111123445678999999999999876421 3321 2235778
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-----------CC---chh
Q 047492 616 LCKAMKANLAWGFMREMRHNGMYP---SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQ-----------VT---SFI 678 (806)
Q Consensus 616 ~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~---~~~ 678 (806)
|...|++++|+..|+++.+..... .......+..++...|++++|.+.++.+...... |+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999999987642111 1345666777889999999999999999876421 12 123
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV- 757 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 757 (806)
...+...+...|+.++|...++++....|.+...+..++..+...|+.++|++.++++.+. .|.+...+-.+...+..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHh
Confidence 3455667778999999999999999999999999999999999999999999999999986 24445566666667777
Q ss_pred hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 047492 758 SEIDHACELFNRMRRKGYEPDQWTFDILKCGL 789 (806)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 789 (806)
|++++|..+++++... .|+......+-+.+
T Consensus 441 ~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999999975 56655544444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-16 Score=168.67 Aligned_cols=332 Identities=13% Similarity=0.047 Sum_probs=239.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHH
Q 047492 99 FHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALV 177 (806)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 177 (806)
....+..+.+.|+++.+..+++...... +.+...+..++.+....|+++.|+..|+++... .| +...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 3445566677888888888888887753 444555666667777788888888888888766 44 4456777777788
Q ss_pred hcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 047492 178 EQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKL 257 (806)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (806)
..|++++|...++.+....+.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence 88888888888888888777777788888888888888888888888776655433 2333333 346778888888888
Q ss_pred HHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHH----HHHHHHHH
Q 047492 258 LEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLME----VFDLFMDM 333 (806)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m 333 (806)
++.+... ...++...+..+...+...|++++|++.+++..... +.+...+..+...+...|++++ |...|++.
T Consensus 200 ~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 200 ARALLPF-FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHhc-CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 8887664 223334445555677788888888888888877521 2345566677788888888875 78888887
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-
Q 047492 334 KEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK- 412 (806)
Q Consensus 334 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~- 412 (806)
.+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++.+.+ |+.
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 7753 2356677788888888888888888888877753 2345566777788888888888888888887653 333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
..+..+..++...|+.++|...|+...+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233344567788888888888888877764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-14 Score=160.38 Aligned_cols=444 Identities=11% Similarity=0.023 Sum_probs=315.5
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHH---
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHV--- 171 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~--- 171 (806)
.+......+-...+.|+++.|.+.|++..+..+.-...++ .++..+...|+.++|+..+++.. .|+...+..
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~lla 107 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLAS 107 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHH
Confidence 4445555556778999999999999999876333222344 88888999999999999999998 333333333
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH
Q 047492 172 LLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRF 251 (806)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (806)
+...+...|++++|+++|+++.+..+.++..+..++..+...++.++|++.++.+..... +...+..++..+...++.
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchH
Confidence 345677789999999999999999998888888889999999999999999999987754 445555555555556777
Q ss_pred HHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccH--HHHHHHHHh---------c
Q 047492 252 EQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRF--NFLVSRLLK---------E 320 (806)
Q Consensus 252 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~---------~ 320 (806)
.+|++.++++.+. .+.+...+..+..++.+.|-...|+++...-.. -+.+....+ ...+.-.++ .
T Consensus 186 ~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 186 YDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 6799999999975 344567778889999999999999988776431 111111100 000111111 1
Q ss_pred CC---HHHHHHHHHHHHhC-CCCCC-hh----hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 047492 321 NR---LMEVFDLFMDMKEG-QISPD-GV----TMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG 391 (806)
Q Consensus 321 ~~---~~~a~~~~~~m~~~-g~~~~-~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 391 (806)
.+ .+.|+.-++.+... +..|. .. ...-.+-++...|++.++++.|+.+...|.+.-..+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 12 23455555555542 11232 12 222345567788999999999999998776545567888899999999
Q ss_pred ChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCCH---HHHHH
Q 047492 392 STHEAYEVLKNSIDHG-----LFPGKKTLSILADALCRDGKFEQMKDLVIFALERNI-----------KLRD---VTYDK 452 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~ 452 (806)
+.++|..+++++.... ..++......|..++...+++++|..+++.+.+... .|+. ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 9999999999987543 123444467888999999999999999999887321 1222 13445
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC
Q 047492 453 FISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMET 532 (806)
Q Consensus 453 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 532 (806)
++..+...|++.+|++.++++....+. |......+...+...|.+.+|++.++.... +.|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~---------------- 482 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVES--LAPR---------------- 482 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCc----------------
Confidence 677788899999999999999776655 888899999999999999999999966654 3454
Q ss_pred cHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcc
Q 047492 533 PAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLG 588 (806)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 588 (806)
+..+....+.++...+++++|..+.+...+. .|+..
T Consensus 483 ------------------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 483 ------------------SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred ------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 3333444555556668888888888777743 45543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-15 Score=141.40 Aligned_cols=485 Identities=13% Similarity=0.027 Sum_probs=311.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHH
Q 047492 275 DVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRF-NFLVSRLLKENRLMEVFDLFMDMKEGQISPD----GVTMNTVL 349 (806)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll 349 (806)
..+..-|.......+|+..++-+.. ...-|+.... -.+-+.+.+.+.+.+|+++++....+-...+ ....+.+-
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivk-nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVK-NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhc-ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3344455556667777777777665 4444443322 2234566777788888888876665422112 22334444
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC------------CHHHHHH
Q 047492 350 CFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFP------------GKKTLSI 417 (806)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------------~~~~~~~ 417 (806)
-.+.+.|.++.|...|+...+. .|+..+--.|+-++...|+.++..+.|.+|+.-...| +....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 4567788899999888887664 4777665556666667788888888888887543222 2222222
Q ss_pred HHH-----HHHhcCC--hhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 047492 418 LAD-----ALCRDGK--FEQMKDLVIFALERNIKLRDV-TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLI 489 (806)
Q Consensus 418 ll~-----~~~~~g~--~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 489 (806)
-+. -..+.++ .+++.-.-.+++.--+.|+-. -+..-+...-.....+.|..+ --.-.
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl---------------ei~ka 426 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL---------------EINKA 426 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh---------------hhhHH
Confidence 211 1111111 111111111111111122210 001111111111111111110 01122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-HHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCCh
Q 047492 490 HGFNKSNRADIAARLLVEMEENGHKPTRALH-RAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRP 568 (806)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 568 (806)
..|.++|+++.|+++++-+.+..-+.-+..- +...-.|...|+....+..+.........-++.....-.+.....|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 3567889999999988877654322222111 111122233344445555555555554555555544444555668999
Q ss_pred HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 569 DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELI 648 (806)
Q Consensus 569 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 648 (806)
++|.+.|++.....-.-... .|| +.-.+-..|+.++|+..|-++..- +..+...+..+.
T Consensus 507 dka~~~ykeal~ndasc~ea-------------------lfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qia 565 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEA-------------------LFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIA 565 (840)
T ss_pred HHHHHHHHHHHcCchHHHHH-------------------HHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 99999999988543221111 133 333466789999999999877642 345677788888
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchh
Q 047492 649 KLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQ 728 (806)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 728 (806)
+.|....+...|++++-+.... ++.|+.+...|...|-+.|+...|.+.+.+...-+|.+..+...|...|....-+++
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence 9999999999999998776443 567888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCChhhHHHHHHHHhh--hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHH
Q 047492 729 DIEGLQKMIEQCFPLDTYTYNILLRRLSV--SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~ 803 (806)
|+.+|+++.- +.|+..-|..+|..|.+ |++.+|+++|++..++ ++-|..++..|++.+...|. .+|.++-+
T Consensus 645 ai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~ 717 (840)
T KOG2003|consen 645 AINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYAD 717 (840)
T ss_pred HHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHH
Confidence 9999999876 68999999999999988 9999999999999876 77799999999999998886 44555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-14 Score=155.37 Aligned_cols=434 Identities=12% Similarity=-0.001 Sum_probs=321.4
Q ss_pred CCCCchhhhhhhhhhccC-CCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhH
Q 047492 72 KTKDVLSCLKFFDWAGRQ-PHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIA 150 (806)
Q Consensus 72 ~~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 150 (806)
+.++...|+..|+-+.+. |... +..+ .++.+++..|+.+.|...++.... ..+........+...|...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~--~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQS--GQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccch--hhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 467778889988877543 3221 1233 777888888999999999999872 2223333333446688889999999
Q ss_pred HHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhC
Q 047492 151 LHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 151 ~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 229 (806)
+++|+++.+. .| ++..+..++..+...++.++|++.++.+....+. ...+..++..+...++..+|.+.++++.+.
T Consensus 122 iely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999887 44 4567777788888999999999999999877654 333455555555567776799999999988
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhH--HHHHHHHHHc---------C---CHHHHHHHHH
Q 047492 230 RECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAY--DVWLRNLVRA---------G---RLDLALEFLK 295 (806)
Q Consensus 230 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~---------g---~~~~a~~~~~ 295 (806)
.+ .+...+..+...+.+.|-...|.++..+-... +.+...-+ ...+.-.++. . -.+.|+.-++
T Consensus 199 ~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 199 AP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 64 56677788889999999999999888765532 22222111 0011111111 1 2455666666
Q ss_pred hhhhcCCCCCCc-ccH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 296 SKNSLEGYVPEV-FRF----NFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 296 ~~~~~~~~~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
.+....+-.|.. ..| --.+-++...|++.++++.++.|...|.+.-..+-..+..+|...+..++|+.+|+.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 665433433432 222 233467788999999999999999988665567888999999999999999999999866
Q ss_pred CC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHHhcCChhHH
Q 047492 371 FG-----LSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGL-------------FPGKK-TLSILADALCRDGKFEQM 431 (806)
Q Consensus 371 ~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~~~-~~~~ll~~~~~~g~~~~a 431 (806)
.. ..++......|.-+|...+++++|..+++++.+... .||-. .+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 32 223445567899999999999999999999987321 12222 334566778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047492 432 KDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN 511 (806)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 511 (806)
++.++.+.... +-|......+.+.+...|.+..|...++......+. +..+....+.++...+++++|..+.+.+.+
T Consensus 436 e~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~- 512 (822)
T PRK14574 436 QKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVIS- 512 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 99999998876 778899999999999999999999999887766554 777888899999999999999999999887
Q ss_pred CCCCCHHh
Q 047492 512 GHKPTRAL 519 (806)
Q Consensus 512 ~~~p~~~~ 519 (806)
..|+...
T Consensus 513 -~~Pe~~~ 519 (822)
T PRK14574 513 -RSPEDIP 519 (822)
T ss_pred -hCCCchh
Confidence 4566543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-12 Score=134.38 Aligned_cols=636 Identities=13% Similarity=0.025 Sum_probs=365.5
Q ss_pred ccCCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhh
Q 047492 70 GKKTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDI 149 (806)
Q Consensus 70 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 149 (806)
+..+++...|.+++.=+.++.+ .....|..+..+.-..|+.+.+...+-..-. -.+.|...|..+.....+.|+++.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccHHH
Confidence 4456899999999998877643 4678999999999999999888776554444 345577999999999999999999
Q ss_pred HHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCcc-----chHHHHHHhhccCCHHHHHHHH
Q 047492 150 ALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDV-----TRTIMLKCLCKQKKIDEAVEYF 223 (806)
Q Consensus 150 A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~ 223 (806)
|.-.|.+..+. .| +-..+---...|-+.|+...|.+-|.++....+|... .--.+++.+...++.+.|.+.+
T Consensus 226 A~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 226 ARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999987 34 3334444566788999999999999999998875432 3445677788888889999999
Q ss_pred HHhHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhH----------------------H----H
Q 047492 224 QQLVSG-RECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAY----------------------D----V 276 (806)
Q Consensus 224 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------------~----~ 276 (806)
+..... +-..+...++.++..|.+...++.|......+... ...+|..-| . .
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r-~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR-ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc-ccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 888773 22345678899999999999999999988887763 222222211 0 1
Q ss_pred HHHHHH--HcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 047492 277 WLRNLV--RAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK 354 (806)
Q Consensus 277 li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 354 (806)
+.-++. +.+...+++.-|..... ....-+...|.-+..++.+.|++.+|+.+|..+......-+...|-.+..+|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n-~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDN-VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhc-CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 111122 22333333333322211 112233455666666777777777777777766665444455566666666777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcC
Q 047492 355 AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSI--------DHGLFPGKKTLSILADALCRDG 426 (806)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~g 426 (806)
.|..+.|.+.|+...... +-+...--.|-..+-+.|+.++|.+.+..+. ..+..|+........+.+...|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 777777777777666532 1223344445555666677777777766643 1223334444444455555666
Q ss_pred ChhHHHHHHHHHHHCCC-----CC-----------------CHHHHHHHHHHHHhcCChhHHHHHHHHH------hhcCC
Q 047492 427 KFEQMKDLVIFALERNI-----KL-----------------RDVTYDKFISALCKANKVEVGYLIHSEL------SRMNK 478 (806)
Q Consensus 427 ~~~~a~~~~~~~~~~~~-----~~-----------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~ 478 (806)
+.++-..+...|+.... -| .......++.+-.+.++.....+-...- ...+.
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 66654444444433110 00 0001111111111111111111111000 00000
Q ss_pred CC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChh---
Q 047492 479 VA-SE-NTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQ--- 553 (806)
Q Consensus 479 ~~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 553 (806)
.. +. ..+..++..+++.+++.+|+.+...+.+.. ..-.+..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~----------------------------------~f~~~~~~~k 666 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAY----------------------------------IFFQDSEIRK 666 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh----------------------------------hhhccHHHHH
Confidence 00 00 112233344444444444444444443321 1111111
Q ss_pred -hHHHHHHhhhcCCChHHHHHHHHHHHHC-CC--ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 047492 554 -IYNFFIDGAGHVKRPDLARAVYELMQRS-GL--VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFM 629 (806)
Q Consensus 554 -~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 629 (806)
.-...+.+....+++..|...++.|... +. .|.... .|+...+.+.+.++-.-=.+++
T Consensus 667 ~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~------------------l~n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 667 ELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN------------------LWNLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455666778899999888888753 11 121111 2665555555555433333333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh-----------ccccHHHHHHH
Q 047492 630 REMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL-----------KTRDLYEAWIR 698 (806)
Q Consensus 630 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~a~~~ 698 (806)
.........-+...+..........+.+..|...+-...... |+....+..+.... +.-.+..+..+
T Consensus 729 ~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~--pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~af 806 (895)
T KOG2076|consen 729 MRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN--PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAF 806 (895)
T ss_pred HHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333321111112222222233456777888888766665553 44334444333211 11234555666
Q ss_pred HHhhhhccCc--chhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-------------hhhHHHHHHHHhh-hcHHH
Q 047492 699 LRGMLINEQS--KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-------------TYTYNILLRRLSV-SEIDH 762 (806)
Q Consensus 699 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~li~~~~~-g~~~~ 762 (806)
+.+..+...+ ...+.-.+..+|-.-|=..-|+.+++++++.. +++ ...||. .-.|-+ |+.+.
T Consensus 807 L~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~-p~~~~~~~~d~~dLrkeAA~NL-~LIY~~SGn~~l 884 (895)
T KOG2076|consen 807 LKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS-PKDVTDPKEDNYDLRKEAAYNL-HLIYKKSGNMQL 884 (895)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC-ccccccccCCcccHHHHHHhhh-hhhhccCCcHHH
Confidence 6555543333 55667788999999999999999999999852 111 234553 346777 99999
Q ss_pred HHHHHHH
Q 047492 763 ACELFNR 769 (806)
Q Consensus 763 A~~~~~~ 769 (806)
|.++++.
T Consensus 885 Arqil~k 891 (895)
T KOG2076|consen 885 ARQILEK 891 (895)
T ss_pred HHHHHHh
Confidence 9888764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-14 Score=148.05 Aligned_cols=586 Identities=14% Similarity=0.041 Sum_probs=293.3
Q ss_pred HHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 047492 118 FLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGF 197 (806)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 197 (806)
++..+...|+.|+..+|..+|..|+..|+.+.|- +|.-|.......+...|+.++......++.+.+. .
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------e 80 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------E 80 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------C
Confidence 3444555567777777777777777777777666 6666665554555666666666666666655443 3
Q ss_pred CCccchHHHHHHhhccCCHHHHHHHHHHhHh-------CC-----------------CCCCHHhHHHHHHHHHhcCCHHH
Q 047492 198 ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVS-------GR-----------------ECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~-----------------~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
|...||..|..+|...||+..-..+=+.+.. .| .-||. ...+......|-++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHH
Confidence 5666777777777777766542211111111 11 11111 112223334455555
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC-CHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG-RLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMD 332 (806)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 332 (806)
+++++..+.......|... +++-+.... .+++-....+... + .|+..+|..++.+-..+|+.+.|..++.+
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~---e-~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLV---E-APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhh---c-CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 5555554443212222111 233333222 2333333333222 2 46677777777777777777777777777
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 047492 333 MKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412 (806)
Q Consensus 333 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 412 (806)
|.+.|++.+.+-|-.|+-+ .++...++.+++.|.+.|+.|+..|+...+-.+..+|....+ +.|.. ..
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~sq-~~ 297 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGSQ-LA 297 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccccc-hh
Confidence 7777776666655555544 666666677777777777777777776666665554442111 11111 11
Q ss_pred HHHHHHHHHHHhcC-----Ch-----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCC--CC
Q 047492 413 KTLSILADALCRDG-----KF-----EQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNK--VA 480 (806)
Q Consensus 413 ~~~~~ll~~~~~~g-----~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~ 480 (806)
..+++-+..-.-.| +. .-....++...-.|+.....+|...+.. ...|.-+...++-..+..... .+
T Consensus 298 hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 298 HGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCc
Confidence 11111111111112 00 0111111111112333333344333322 225666666666555532111 11
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHh----HhhC------
Q 047492 481 -SENTYIQLIHGFNKSNRADIAARLLV--EMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNM----QLSH------ 547 (806)
Q Consensus 481 -~~~~~~~li~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~----~~~~------ 547 (806)
++..|..++.-|.+.-+..-...++. +.... ..+......+.....+... ......+... ....
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~lrk-ns~lr~lv~Lss~Eler~he~~~~ 453 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENLRK-NSFLRQLVGLSSTELERSHEPWPL 453 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHhCc-chHHHHHhhhhHHHHhcccccchh
Confidence 34445555555544322211111111 11111 0111111111111111111 1111111000 0000
Q ss_pred -CCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHH
Q 047492 548 -QETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAW 626 (806)
Q Consensus 548 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 626 (806)
..+-...-+.++..+...-+..+++..-++.... ..|. .|..||.-++.....+.|.
T Consensus 454 ~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~g---------------------~ya~Li~l~~~hdkle~Al 511 (1088)
T KOG4318|consen 454 IAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFAG---------------------LYALLIKLMDLHDKLEYAL 511 (1088)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh---------------------HHHHHhhhHHHHHHHHHHH
Confidence 1111223455666666666666666444443322 1121 2899999999999999999
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHHHHHhhccccHHHHHHHHHhh
Q 047492 627 GFMREMRHN--GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTLLLHALKTRDLYEAWIRLRGM 702 (806)
Q Consensus 627 ~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 702 (806)
.+.++.... .+..|..-+..+.+.+.+.+....+..++.++.+.-..-+ ..+.--++......|+.+.-.+.++-.
T Consensus 512 ~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 512 SFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred hchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 999988753 3455777788999999999999999999998876322111 222223333444455554444443333
Q ss_pred hhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh---hcHHHHHHHH
Q 047492 703 LINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV---SEIDHACELF 767 (806)
Q Consensus 703 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---g~~~~A~~~~ 767 (806)
. +..-.. | .-++....+.++...|.+..+..... .+|.+..-..+.+.+.+ .+.+++..+-
T Consensus 592 v-slgl~e-t-gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls 655 (1088)
T KOG4318|consen 592 V-SLGLSE-T-GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLS 655 (1088)
T ss_pred H-Hhhhhh-c-ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhc
Confidence 2 111111 1 33455667788888888888877765 56776666666666665 4455554443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-10 Score=116.22 Aligned_cols=608 Identities=12% Similarity=0.003 Sum_probs=387.5
Q ss_pred ChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 047492 111 LTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSK 190 (806)
Q Consensus 111 ~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 190 (806)
+...|..++.+..+.+ |.++..|-+-.+.=-..|++..|..+..+=.+. +.-+...| +.+ ++....+.|..+..
T Consensus 266 DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvW---Lea-iRLhp~d~aK~vvA 339 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVW---LEA-IRLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHH---HHH-HhcCChHHHHHHHH
Confidence 3455667777777643 445556655555555566666665554433222 11122233 222 23344555666666
Q ss_pred HHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcc
Q 047492 191 QISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKL 270 (806)
Q Consensus 191 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 270 (806)
...+..+.+...|.-.+ --..+...=.+++++.++.- +.++..|-..+ .....+.|.-++.+..+. ++.+
T Consensus 340 ~Avr~~P~Sv~lW~kA~---dLE~~~~~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAvec--cp~s 409 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAA---DLESDTKNKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVEC--CPQS 409 (913)
T ss_pred HHHHhCCCChhhhhhHH---hhhhHHHHHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHh--ccch
Confidence 65555443433332222 22233344456666666543 24455565433 445566677777776653 3333
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCChhhHH
Q 047492 271 EKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMD----MKEGQISPDGVTMN 346 (806)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~~~~~~~~~ 346 (806)
...| -+|.+..-++.|..++.+..+ .++-+...|.+....=-.+|+.+.+.+++++ +...|+..+...|-
T Consensus 410 ~dLw----lAlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 410 MDLW----LALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 3333 445566667788888888763 4555666776666656678888888777764 44568888888887
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSEFGLSPN--GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCR 424 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 424 (806)
.=...|-..|.+-.+..+.+..+..|+.-. ..+|..-.+.|.+.+.++-|..+|....+--. -+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHh
Confidence 777888888888888888888877776533 35788888889999999999999988876532 255667777766677
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047492 425 DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
.|..+....++.++...- +-....|-....-+-..|++..|..++....+.++. +...|-.-++.-..+.+++.|..+
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 788899999998888763 555667777777788889999999999888887766 788888888989999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc
Q 047492 505 LVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV 584 (806)
Q Consensus 505 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 584 (806)
|.+... ..|+...|.--+....-.+. .+++..+++......+.-...|-.+...+-+.++++.|.+.|..-.+ .-
T Consensus 641 lakar~--~sgTeRv~mKs~~~er~ld~-~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~c 715 (913)
T KOG0495|consen 641 LAKARS--ISGTERVWMKSANLERYLDN-VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KC 715 (913)
T ss_pred HHHHhc--cCCcchhhHHHhHHHHHhhh-HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cC
Confidence 988876 45555554333322222222 34555555666666666666777777777777777777766655442 23
Q ss_pred cCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 585 PQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVM 664 (806)
Q Consensus 585 p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 664 (806)
|+... .|-.|...=-+.|..-.|..+++...-.+ +-+...|-..|+.=.+.|+.+.|..++
T Consensus 716 P~~ip------------------LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 716 PNSIP------------------LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred CCCch------------------HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 44332 25555555556667777777777766543 225566777777777777777777777
Q ss_pred HHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC
Q 047492 665 NHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD 744 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 744 (806)
.+.++. .+.+...+...++..-+.++-.. ..++......|++++-+....|....++++|.+.|++..+.+ +.+
T Consensus 777 akALQe-cp~sg~LWaEaI~le~~~~rkTk----s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~ 850 (913)
T KOG0495|consen 777 AKALQE-CPSSGLLWAEAIWLEPRPQRKTK----SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDN 850 (913)
T ss_pred HHHHHh-CCccchhHHHHHHhccCcccchH----HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Ccc
Confidence 666654 33444555555555555444222 233344556777777777777777777777777777777752 333
Q ss_pred hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 745 TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 745 ~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
-.+|.-+..-+.. |.-++-.+++.+....
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4456555566666 7666666777666644
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-14 Score=146.98 Aligned_cols=253 Identities=14% Similarity=0.122 Sum_probs=146.4
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-CccchHHHHHHhhccCCHHHHHHHHHHhHhCC
Q 047492 152 HLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFE-NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 152 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 230 (806)
.++-.+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...| +...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 99999888776 6679999999999999888776
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHhhhC---CCCC-cchh-------------hHHHHHHHHHHcCCHHHH
Q 047492 231 ECVSGFMIGIVVDALCKNSRFEQ---AGKLLEDFKDR---DDVV-KLEK-------------AYDVWLRNLVRAGRLDLA 290 (806)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~---~~~~-~~~~-------------~~~~li~~~~~~g~~~~a 290 (806)
.|...+|..|..+|...|+... +.+.+..+... .|+. |... .-...+...+..|-|+.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999765 22211111110 0110 0000 111223333444455555
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047492 291 LEFLKSKNSLEGYVPEVFRFNFLVSRLLKE-NRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRS 369 (806)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 369 (806)
++++..+.......|-.+ +++-+... ..+++-..+.....+ .|++.+|..++++-.-.|+++.|..++.+|.
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 555544432211111111 12222211 112222222222211 2555555555555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047492 370 EFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDG 426 (806)
Q Consensus 370 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 426 (806)
+.|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+..+|
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 55555555545444443 4555555555555555555555555555555544433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-09 Score=107.17 Aligned_cols=618 Identities=9% Similarity=-0.018 Sum_probs=441.4
Q ss_pred CchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHH
Q 047492 75 DVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLF 154 (806)
Q Consensus 75 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 154 (806)
|..+|--++..+....+- .+..+-+-.++=-..|++..|..++..=-+ .++.+..+|-..+ +...++.|..+.
T Consensus 266 DikKaR~llKSvretnP~--hp~gWIAsArLEEvagKl~~Ar~~I~~GCe-~cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPK--HPPGWIASARLEEVAGKLSVARNLIMKGCE-ECPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHhhHHHHHHHHHHHHHh-hCCchHHHHHHHH----hcCChHHHHHHH
Confidence 455555555555443222 223333333444456777777777665444 4566777775544 445667777777
Q ss_pred HHHhhcCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC
Q 047492 155 GKMRFQGMDLDDY-AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233 (806)
Q Consensus 155 ~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (806)
...... -|+++ .|- .+---..+...-..+++..++..+.+...|-..+ ...+.+.|.-++....+.-+ .
T Consensus 339 A~Avr~--~P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rAveccp-~ 408 (913)
T KOG0495|consen 339 ANAVRF--LPTSVRLWL---KAADLESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERAVECCP-Q 408 (913)
T ss_pred HHHHHh--CCCChhhhh---hHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHHHHhcc-c
Confidence 776655 34322 332 2222122333344566666665555555555444 44566678888888776432 3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh---hcCCCCCCcccH
Q 047492 234 SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN---SLEGYVPEVFRF 310 (806)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~ 310 (806)
+...| -+|++..-++.|..+++...+ .++.+...|.+-...--.+|+.+...+++++-. +..|+..+...|
T Consensus 409 s~dLw----lAlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 409 SMDLW----LALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 33444 356677788999999999887 577788889888888888999988888887643 236777788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 311 NFLVSRLLKENRLMEVFDLFMDMKEGQISP--DGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLC 388 (806)
Q Consensus 311 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 388 (806)
-.=...|-..|..-.+..+......-|+.- -..||+.-...|.+.+.++-|..+|....+. ++.+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 887888888899999999998888877654 2457888888999999999999999988774 2445677887777777
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047492 389 GDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYL 468 (806)
Q Consensus 389 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 468 (806)
..|..++-..+|++....-.+ ....|-.....+-..|+...|..++..+.+.. +.+..+|-.-+..-....+++.|..
T Consensus 562 ~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHH
Confidence 789999999999999876332 44556666666777899999999999988876 5577889999999999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh-HHHHHHHHHccCCcHHHHHHHHHhHhhC
Q 047492 469 IHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRAL-HRAVIRCLCNMETPAKQFLQLLNMQLSH 547 (806)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 547 (806)
+|..... ..|+...|..-+..---.++.++|++++++..+ .-|+..- |..+-+.+...++ .+.+..........
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~-ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMEN-IEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHH-HHHHHHHHHhcccc
Confidence 9988765 445677777777777778899999999999887 4666544 3333344444443 23333334444555
Q ss_pred CCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHH
Q 047492 548 QETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWG 627 (806)
Q Consensus 548 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 627 (806)
++..+-.|-.+.+.--+.|.+-.|..++++..-.+ |+... .|-..|..=.+.|+.+.|..
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~------------------lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNAL------------------LWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcch------------------hHHHHHHHHHHcCCHHHHHH
Confidence 66667778888888888899999999999987553 44432 48899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccC
Q 047492 628 FMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQ 707 (806)
Q Consensus 628 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 707 (806)
++.+.++. ++.+...|..-|....+.++-....+.+++. ..|+.+.-.+...+....+++.|..-|.++....+
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 88887764 5667778888888888888877777766665 34555666677778888999999999999999999
Q ss_pred cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-hhhHHHH
Q 047492 708 SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNIL 751 (806)
Q Consensus 708 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 751 (806)
..-.+|-.+...+..+|.-++-.+++...... .|. -..|.+.
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 88899999999999999888778888777664 333 3445443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-12 Score=121.54 Aligned_cols=483 Identities=10% Similarity=0.041 Sum_probs=258.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHH-HHHHHHhcCCcchHHHHHHHHHhcCCC-Ccc----ch
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHV-LLNALVEQGCFDAVAVVSKQISMRGFE-NDV----TR 203 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~ 203 (806)
+..+...|..-|.......+|+..|+-+.+....|+.-.... +-..+.+.+.+.+|+++|+..+..-+. +.. ..
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 334444556667777888888888888877766666543322 234456777888899999888776542 222 44
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----------Ccchh
Q 047492 204 TIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDV-----------VKLEK 272 (806)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~ 272 (806)
+.+.-.+.+.|.++.|..-|+...+.. |+..+-..|+-++...|+.++..+.|..|....+. .|+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 555556778899999999998887755 45444334444555678888888888888765221 12222
Q ss_pred hHHHHHH-----HHHHcC--CHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 047492 273 AYDVWLR-----NLVRAG--RLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTM 345 (806)
Q Consensus 273 ~~~~li~-----~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 345 (806)
..+..|+ .+-+.+ +.++++-.--++.. .-+.||-.. | .+-+++.++.-....+..|..
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~-----------g-~dwcle~lk~s~~~~la~dle-- 422 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAA-----------G-CDWCLESLKASQHAELAIDLE-- 422 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhc-----------c-cHHHHHHHHHhhhhhhhhhhh--
Confidence 2222111 111111 11111111111110 111111100 0 011111111110000000000
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHc-CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 346 NTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN-SLCG-DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALC 423 (806)
Q Consensus 346 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 423 (806)
..-..-|.+.|+++.|.++++-+.+..-+.-...-+.|-. -|.+ ..++..|.++-+......- -+......--....
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceee
Confidence 0111235677788888777776665332222222222221 1222 3356666666555443211 12221111112223
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047492 424 RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAAR 503 (806)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 503 (806)
..|++++|.+.+++.+...-......||. --.+-+.|++++|+..|-.+...-. .+......+...|....+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHH
Confidence 45777888888877766543333333332 2245567778888777766543211 155566667777777777777777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC
Q 047492 504 LLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL 583 (806)
Q Consensus 504 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 583 (806)
++-+.... +.-|+....-+...|-+.|+. .+++...-..-.-.+.+..+...+...|....-+++++..|++.. =+
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdk-sqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--li 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDK-SQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LI 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccch-hhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hc
Confidence 77655431 333444455555555555553 333333222233456677777777777777777788888877765 45
Q ss_pred ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH-HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 047492 584 VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL-CKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKN 656 (806)
Q Consensus 584 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 656 (806)
.|+... |..++..| .+.|++.+|..+|+..... ++-|..++..|++.+...|.
T Consensus 656 qp~~~k-------------------wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSK-------------------WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHH-------------------HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 677665 66665554 4477888888888776653 56677777777777776663
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-11 Score=114.41 Aligned_cols=217 Identities=9% Similarity=0.036 Sum_probs=173.1
Q ss_pred hhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C
Q 047492 562 AGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-S 640 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~ 640 (806)
+.-.|+...|..-|+..++....++. .|--+...|....+.++.++.|++... +.| +
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~--------------------lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n 393 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS--------------------LYIKRAAAYADENQSEKMWKDFNKAED--LDPEN 393 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch--------------------HHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCC
Confidence 34468888899999998865433332 266778889999999999999999987 444 5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
+.+|.+-.+.+.-.+++++|..-|++.....+ -+.+.|-.+..+.++.+.+.++...|++....+|.-+.+++-...++
T Consensus 394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEIL 472 (606)
T ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 66788888888889999999999999987653 34566667777788999999999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHHHcCCCCC-------hhhHHHHHHHHhh--hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhc
Q 047492 721 SGCIKVSQDIEGLQKMIEQCFPLD-------TYTYNILLRRLSV--SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYN 791 (806)
Q Consensus 721 ~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 791 (806)
..+++++.|++.|+.+.+. .|+ ...+-.=.-...+ +++..|.+++.+..+...+ ....+.+|...-.+
T Consensus 473 tDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQ 549 (606)
T ss_pred hhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHH
Confidence 9999999999999999985 333 2222111112223 8999999999998876433 44678889999999
Q ss_pred cCCHHHHHHHHHh
Q 047492 792 CLRTDEAERRLEE 804 (806)
Q Consensus 792 ~g~~~eA~~~l~~ 804 (806)
.|+.+||+++|++
T Consensus 550 ~~~i~eAielFEk 562 (606)
T KOG0547|consen 550 RGKIDEAIELFEK 562 (606)
T ss_pred HhhHHHHHHHHHH
Confidence 9999999999986
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-08 Score=98.07 Aligned_cols=432 Identities=11% Similarity=0.037 Sum_probs=256.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCc-ccHHHH
Q 047492 235 GFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEV-FRFNFL 313 (806)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 313 (806)
...|-.....=...+++..|..+|++.... -..+...|...+..-.++..+..|..++++... +-|.+ ..|-..
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyKY 147 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHHH
Confidence 344444444444567778888888887764 355666777778888888888888888887753 23332 234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 047492 314 VSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGST 393 (806)
Q Consensus 314 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 393 (806)
+..=-..|++..|.++|+...+ ..||...|++.|+.=.+-..++.|..+|+...- +.|++.+|-....--.++|..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcH
Confidence 4444567888888899888776 468888999998888888889999999988775 458888888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHH
Q 047492 394 HEAYEVLKNSIDHGLFPGKKTLSILADAL----CRDGKFEQMKDLVIFALERNIKLR--DVTYDKFISALCKANKVEVGY 467 (806)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~ 467 (806)
..|..+|....+. ..|...-..++.++ .++..++.|.-+|+-.++.- +.+ ...|..+...=-+-|+.....
T Consensus 224 ~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 224 ALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred HHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhH
Confidence 8888888887753 11333333333333 45567888888888877753 222 334444444434445544333
Q ss_pred HH--------HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHHc---
Q 047492 468 LI--------HSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA-------LHRAVIRCLCN--- 529 (806)
Q Consensus 468 ~~--------~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~--- 529 (806)
.. ++.+...++. |-.+|-..++.-...|+.+...++|++.+.+ ++|-.. .|.=+=.+|..
T Consensus 301 d~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4555555555 7788888888888899999999999999875 555221 11111111111
Q ss_pred cCCcHHHHHHHHHhHhhCCCCChhhHHHHH----HhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCC
Q 047492 530 METPAKQFLQLLNMQLSHQETNFQIYNFFI----DGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIP 605 (806)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~ 605 (806)
..+ ........+.....++....++.-+= ..-.++.+...|.+++.... |..|...+
T Consensus 379 ~ed-~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~Kl---------------- 439 (677)
T KOG1915|consen 379 AED-VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKL---------------- 439 (677)
T ss_pred hhh-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhH----------------
Confidence 111 12222333333344444444433322 22234455555555555555 44454443
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC-CCCchhHHHHH
Q 047492 606 RKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGR-QVTSFIGNTLL 683 (806)
Q Consensus 606 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~ 683 (806)
|...|..=.+.+++|....++.+.++ ..| |..+|......=...|+.+.|..+|+-...... ......+...+
T Consensus 440 ---Fk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 440 ---FKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 55555555556666666666666665 233 344455444444456666666666665554321 22222333333
Q ss_pred HHhhccccHHHHHHHHHhhhh
Q 047492 684 LHALKTRDLYEAWIRLRGMLI 704 (806)
Q Consensus 684 ~~~~~~~~~~~a~~~~~~~~~ 704 (806)
+--...|..+.|..++++.+.
T Consensus 515 dFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHH
Confidence 333345555555555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-09 Score=101.05 Aligned_cols=431 Identities=11% Similarity=0.029 Sum_probs=221.6
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLL 258 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (806)
.+++..|..+|+..+.....+...|.-.+..=.++..+..|..+++..+..-+..| ..|-..+.+=-..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHH
Confidence 34444555555555544444444444445555555555555555555444322222 22222333333344555555555
Q ss_pred HHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047492 259 EDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQI 338 (806)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 338 (806)
++.. ...|+...|.+.|+.-.+.. .++.|..+++..+- +
T Consensus 165 erW~---~w~P~eqaW~sfI~fElRyk------------------------------------eieraR~IYerfV~--~ 203 (677)
T KOG1915|consen 165 ERWM---EWEPDEQAWLSFIKFELRYK------------------------------------EIERARSIYERFVL--V 203 (677)
T ss_pred HHHH---cCCCcHHHHHHHHHHHHHhh------------------------------------HHHHHHHHHHHHhe--e
Confidence 5444 22444444444444444444 44445444444443 2
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHH
Q 047492 339 SPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF-GL-SPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPG-KKTL 415 (806)
Q Consensus 339 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~ 415 (806)
.|+..+|--....=.+.|.+..+..+|....+. |- ..+...+.++..--.++..++.|.-+|+-.+++-.+-. ...|
T Consensus 204 HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~ 283 (677)
T KOG1915|consen 204 HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELY 283 (677)
T ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 244444444444444444444444444443331 00 01111222222222233444444444444443311100 1122
Q ss_pred HHHHHHHHhcCChhHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH-HHHH
Q 047492 416 SILADALCRDGKFEQMKDL--------VIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASE-NTYI 486 (806)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 486 (806)
..+..-=-+-|+.....+. ++.+++.+ +.|-.+|-..++.-...|+.+...++|+.....-++.+. ..|.
T Consensus 284 k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 284 KKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 2222222222332222221 22333333 445556666666666666666666666666543222111 1122
Q ss_pred HHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH----ccCCcHHHHHHHHHhHhhCCCCChhh
Q 047492 487 QLIHG--------FNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLC----NMETPAKQFLQLLNMQLSHQETNFQI 554 (806)
Q Consensus 487 ~li~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (806)
..|.. =....+.+.+.++|+..++- ++-...||.-+=-.++ +..+ ...+...+.. .-|..|...+
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~-l~~ARkiLG~-AIG~cPK~Kl 439 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLN-LTGARKILGN-AIGKCPKDKL 439 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcc-cHHHHHHHHH-HhccCCchhH
Confidence 22221 12356777788888887772 3334445543322222 1112 2333333333 3455677888
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 555 YNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+...|..-.+.++++.+..+|++..+. .|.... +|.-....=...|+.+.|..+|.-.++
T Consensus 440 Fk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~------------------~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 440 FKGYIELELQLREFDRCRKLYEKFLEF--SPENCY------------------AWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhH------------------HHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 888888888999999999999999965 454432 376666666778999999999999887
Q ss_pred C-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 047492 635 N-GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT 675 (806)
Q Consensus 635 ~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 675 (806)
. .+......|.+.|+-=...|.++.|..+++.+++......
T Consensus 500 qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 500 QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 4 2333455677777777789999999999999998754443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-10 Score=111.34 Aligned_cols=280 Identities=14% Similarity=0.049 Sum_probs=223.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHH
Q 047492 481 SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFID 560 (806)
Q Consensus 481 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (806)
+........+-+...+++.+..+++++..+. ..+....+..-|.++...++ ...+..+-+......+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~-~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGK-SNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcc-cchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 5556666677788889999999999998874 34555556666777777777 577777777778888999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCC
Q 047492 561 GAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN--GMY 638 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~ 638 (806)
-|...|+..+|.+.|.+.. .+.|.... .|-.....|+-.|..+.|+..+...-+. |..
T Consensus 321 YYl~i~k~seARry~SKat--~lD~~fgp------------------aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h 380 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKAT--TLDPTFGP------------------AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH 380 (611)
T ss_pred HHHHhcCcHHHHHHHHHHh--hcCccccH------------------HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999987 44555443 4888899999999999999988877662 211
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhh-------ccCcchh
Q 047492 639 PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLI-------NEQSKIS 711 (806)
Q Consensus 639 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~ 711 (806)
-+..| +.--|.+.++.+.|.++|.+..... +.|+.+.+.+.-..+..+.+.+|.+.|+.... ..+....
T Consensus 381 -lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 381 -LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred -chHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 12223 3334788999999999999987653 56788889998888999999999999999872 1223556
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGL 789 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 789 (806)
+++.|..+|.++++.++|+..+++.+.. .+.|..++.++.-.|.. |+++.|++.|.+.. .++||..+...++..+
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 7899999999999999999999999997 57889999999999999 99999999999876 5788886666555433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=135.91 Aligned_cols=260 Identities=15% Similarity=0.077 Sum_probs=114.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCC
Q 047492 487 QLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVK 566 (806)
Q Consensus 487 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 566 (806)
.+...+.+.|++++|++++++.......|+ ++..|..+.......+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~----------------------------------~~~~~~~~a~La~~~~ 58 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPD----------------------------------DPEYWRLLADLAWSLG 58 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc----------------------------------cccccccccccccccc
Confidence 457778888999999999866544321233 3344555555666778
Q ss_pred ChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047492 567 RPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEE 646 (806)
Q Consensus 567 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 646 (806)
+.+.|...++++...+.. +.. .+..++.. ...+++++|.+++....+. .++...+..
T Consensus 59 ~~~~A~~ay~~l~~~~~~-~~~-------------------~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~ 115 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDKA-NPQ-------------------DYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-ccc-------------------cccccccc-ccccccccccccccccccc--ccccchhhH
Confidence 999999999999865422 121 26666666 6899999999998877664 356666778
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCC-CCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhcccc
Q 047492 647 LIKLLCSTKNYDMVVGVMNHLEGHG-RQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIK 725 (806)
Q Consensus 647 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 725 (806)
++..+.+.|+++++.++++.+.... .+.+...+..+...+.+.|+.++|.+.++++....|.+..+.+.++..+...|+
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 8888999999999999999987543 245667777888888899999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 726 VSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 726 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
.+++.++++...+. .+.|...|..+..+|.. |++++|+..|++.... -+.|..+...+..++.+.|+.++|.++.++
T Consensus 196 ~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 196 YDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT--------------
T ss_pred hHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 99999999988887 36778888999999999 9999999999998875 233777888899999999999999998775
Q ss_pred h
Q 047492 805 M 805 (806)
Q Consensus 805 m 805 (806)
.
T Consensus 274 ~ 274 (280)
T PF13429_consen 274 A 274 (280)
T ss_dssp -
T ss_pred c
Confidence 4
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-11 Score=123.59 Aligned_cols=281 Identities=10% Similarity=-0.006 Sum_probs=135.4
Q ss_pred CCChhHHHHHHHHhHhccCCcchhHHHHH-HHHHHhcCChhhHHHHHHHHhhcCCCCChhhHH--HHHHHHHhcCCcchH
Q 047492 109 AKLTPLMVDFLENYKKDRYYHQVRFNDTL-VMGYALAGKPDIALHLFGKMRFQGMDLDDYAYH--VLLNALVEQGCFDAV 185 (806)
Q Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a 185 (806)
.|+++.|.+.+..-..... ++..+..+ ..+..+.|+++.|...|+++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 4666666666665444311 12222222 22335566666666666666554 44433222 223445556666666
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHH
Q 047492 186 AVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSG-------FMIGIVVDALCKNSRFEQAGKLL 258 (806)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 258 (806)
...++.+.+..+.+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666666666556666666666666666666666666666655443211 11222222222233334444444
Q ss_pred HHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047492 259 EDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQI 338 (806)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 338 (806)
+.+... .+ .+......+...+...|+.++|.+++++..+.
T Consensus 253 ~~lp~~--~~------------------------------------~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-- 292 (398)
T PRK10747 253 KNQSRK--TR------------------------------------HQVALQVAMAEHLIECDDHDTAQQIILDGLKR-- 292 (398)
T ss_pred HhCCHH--Hh------------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 443321 12 23334444445555555555555555544442
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 339 SPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSIL 418 (806)
Q Consensus 339 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 418 (806)
.||... .++.+....++.+++.+..+...+.. +-|...+..+...+.+.+++++|.+.|+.+.+. .|+..++..+
T Consensus 293 ~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~L 367 (398)
T PRK10747 293 QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWL 367 (398)
T ss_pred CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 222211 11222223355555555555544432 223334444555555555555555555555543 3555555555
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 047492 419 ADALCRDGKFEQMKDLVIFA 438 (806)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~ 438 (806)
...+.+.|+.++|.+++++.
T Consensus 368 a~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-12 Score=126.10 Aligned_cols=287 Identities=10% Similarity=-0.002 Sum_probs=220.2
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHccCCcHHHHHH
Q 047492 462 KVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENG--HKPTRALHRAVIRCLCNMETPAKQFLQ 539 (806)
Q Consensus 462 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~ 539 (806)
+..+|...|..+...... .......+.++|...+++++|.++|+.+.+.. ..-+..+|.++++.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345677777664433222 33455667777888888888888888777631 122455677777665432 22333
Q ss_pred HHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhc
Q 047492 540 LLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKA 619 (806)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 619 (806)
+.+......+..+.+|+++.+.|.-.++.+.|++.|++.. .+.|+.. .+|+.+..-+...
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAi--Qldp~fa------------------YayTLlGhE~~~~ 468 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAI--QLDPRFA------------------YAYTLLGHESIAT 468 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhh--ccCCccc------------------hhhhhcCChhhhh
Confidence 3444556677889999999999999999999999999998 4567543 2477777888889
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHH
Q 047492 620 MKANLAWGFMREMRHNGMYPSMECY---EELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAW 696 (806)
Q Consensus 620 ~~~~~A~~~~~~m~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 696 (806)
..+|.|...|+..+. .|...| .-+.-.|.+.++++.|.-.|++..+.++.. ..+...+...+-+.|+.++|+
T Consensus 469 ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-svi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-SVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred HHHHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc-hhHHhhhhHHHHHhhhhhHHH
Confidence 999999999998864 344444 446667889999999999999998877543 344555667788999999999
Q ss_pred HHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCC
Q 047492 697 IRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGY 775 (806)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~ 775 (806)
++++++....+.++......+..+...++.++|+..++++++. ++-+...+..+...|.+ |+.+.|+.-|.-+.+...
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 9999999999999999999999999999999999999999996 56667778888889988 999999999999988766
Q ss_pred CCCh
Q 047492 776 EPDQ 779 (806)
Q Consensus 776 ~p~~ 779 (806)
++..
T Consensus 623 kg~~ 626 (638)
T KOG1126|consen 623 KGAQ 626 (638)
T ss_pred ccch
Confidence 6555
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-11 Score=124.69 Aligned_cols=133 Identities=10% Similarity=-0.033 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhH-HHHHHHhhccccHHHHHHHHHhhhhccCcch--hhHHH
Q 047492 639 PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIG-NTLLLHALKTRDLYEAWIRLRGMLINEQSKI--SLLGQ 715 (806)
Q Consensus 639 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 715 (806)
.+...+..+...+...|+.++|.+++++..+.........+ .......+..++...+.+.++...+..|.++ ....+
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 36777778888888888888888888888876544332211 1111122344666777777777777777777 66777
Q ss_pred HHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 716 LIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 716 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
+...+.+.|++++|.+.|+........|+...+..+...+.+ |+.++|.++|++-.
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777778888888888743333246777777777777777 88888877777643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-10 Score=111.57 Aligned_cols=416 Identities=12% Similarity=0.014 Sum_probs=264.6
Q ss_pred HHHHHhcCChhhHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCH
Q 047492 138 VMGYALAGKPDIALHLFGKMRFQGMDLD-DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKI 216 (806)
Q Consensus 138 i~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 216 (806)
..-|-++|++++|++.|.+.... .|| +.-|.....+|...|+|+++.+.....++..+.-..++..-.+++-..|++
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 34567889999999999999877 777 777888888888999999999998888887766666777777888888888
Q ss_pred HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH---------hh-hCCCCCcchhhHHHHHHHHHHcCC
Q 047492 217 DEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLED---------FK-DRDDVVKLEKAYDVWLRNLVRAGR 286 (806)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------~~-~~~~~~~~~~~~~~li~~~~~~g~ 286 (806)
++|+.=. +-..+..++....-...+.+++.. +. .+..+.|+.....+....+...-
T Consensus 200 ~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~- 265 (606)
T KOG0547|consen 200 DEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP- 265 (606)
T ss_pred HHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc-
Confidence 8876422 222233333332222223333322 22 12234555444443333321100
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHh--c---CCHHHHHHHHHHHHhC-CCCC-----C------hhhHHHHH
Q 047492 287 LDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLK--E---NRLMEVFDLFMDMKEG-QISP-----D------GVTMNTVL 349 (806)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~-g~~~-----~------~~~~~~ll 349 (806)
......+.......+..++.. . ..+..+...+.+-... ...+ | ..+...-.
T Consensus 266 ------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 266 ------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 000000111111122211111 0 1223333332221110 0011 1 11111112
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047492 350 CFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFE 429 (806)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 429 (806)
..+.-.|+.-.|..-|+..++....++ ..|--+...|....+.++.++.|++..+-+.. |+.+|..-.+.+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 223456888899999999887543222 23777778899999999999999999877654 6667777777777778999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 430 QMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEME 509 (806)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 509 (806)
+|..=|++.++.. +-+...|..+.-+.-+.+++++++..|++..++-+. -+..|+.....+...+++++|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999988765 445566777777777899999999999999987655 78899999999999999999999999998
Q ss_pred HCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcch
Q 047492 510 ENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGS 589 (806)
Q Consensus 510 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 589 (806)
+ +.|+.... ...+-+.+.-.++-.- -.+++..|.+++.+..+. .|....
T Consensus 490 ~--LE~~~~~~--------------------------~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~ 538 (606)
T KOG0547|consen 490 E--LEPREHLI--------------------------IVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQ 538 (606)
T ss_pred h--hccccccc--------------------------cccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHH
Confidence 7 44442110 0001111111111111 237889999999999854 443332
Q ss_pred hHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 590 NILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+|..|...-.+.|+.++|+++|++-..
T Consensus 539 ------------------A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 539 ------------------AYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ------------------HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 488999999999999999999998765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=135.70 Aligned_cols=261 Identities=13% Similarity=0.109 Sum_probs=96.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC
Q 047492 136 TLVMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK 214 (806)
Q Consensus 136 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 214 (806)
.+...+.+.|++++|+++++........| ++..|..+.......++++.|...++++...+..+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44666777788888888886544332123 333444444455567788888888888887766666667777766 6778
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHH
Q 047492 215 KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFL 294 (806)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (806)
++++|.++++...+.. ++...+..++..+...|+++++.++++.+......+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888877665543 34455667777788888888888888887655344566677777778888888888888888
Q ss_pred HhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 047492 295 KSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL 373 (806)
Q Consensus 295 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 373 (806)
++..+. .|+ ....+.++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|++..+..
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 877652 343 5567777777888888888777777766643 3456667777788888888888888888876643
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 374 SPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 374 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
+.|......+..++.+.|+.++|.++.++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3466777777788888888888888777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-10 Score=119.42 Aligned_cols=284 Identities=11% Similarity=0.029 Sum_probs=121.3
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLL 258 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (806)
.|+++.|.+......+....+...|.....+..+.|+++.|.+.+.++.+................+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45666666554443332111112233333333556666666666666654332222122122244555566666666666
Q ss_pred HHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCc------ccHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 259 EDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEV------FRFNFLVSRLLKENRLMEVFDLFMD 332 (806)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~ 332 (806)
+.+.+. .+-+......+...|.+.|+|++|.+++..+.+.....++. .+|..++.......+.+...++++.
T Consensus 177 ~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 177 DKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 665543 12233444555555555555555555555554422221111 1112222222222333333333333
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 047492 333 MKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412 (806)
Q Consensus 333 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 412 (806)
+.+. .+.++.....+...+...|+.++|.+++++..+. .++.... ++.+.+..++.+++.+..+...+.... |.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CH
Confidence 3221 1223444444444555555555555555444432 2222111 122222334444455544444443221 33
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSE 472 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 472 (806)
..+.++...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444455555544444433 24444444444444444444444444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-10 Score=120.29 Aligned_cols=288 Identities=11% Similarity=0.006 Sum_probs=154.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChhH
Q 047492 319 KENRLMEVFDLFMDMKEGQISPDGV-TMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNG--IVYNYLINSLCGDGSTHE 395 (806)
Q Consensus 319 ~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 395 (806)
..|+++.|.+.+.+..+.. |+.. .+-....++.+.|+.+.|.+.+.+..+.. |+. ...-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3455555555555444432 2222 22222344445555555555555544321 222 122223444555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCChhHHHHHHH
Q 047492 396 AYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYD-KFISAL---CKANKVEVGYLIHS 471 (806)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~ 471 (806)
|...++.+.+.... +...+..+...+...|+++++.+++..+.+.+.. +...+. .-..++ ...+..+.+.+.+.
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 55555555554322 3444555555555555555555555555555432 222121 111111 11122222222333
Q ss_pred HHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH-HHHHHHH--ccCCcHHHHHHHHHhHh
Q 047492 472 ELSRMNKV---ASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHR-AVIRCLC--NMETPAKQFLQLLNMQL 545 (806)
Q Consensus 472 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~--~~~~~~~~~~~~~~~~~ 545 (806)
.+.+..+. .+...+..+...+...|+.++|.+++++..+. .||..... .++..+. ..++ ........+...
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e~~l 326 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPED-NEKLEKLIEKQA 326 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCC-hHHHHHHHHHHH
Confidence 33322221 15556666666666667777777766666653 33332110 0111111 1222 344555555555
Q ss_pred hCCCCCh--hhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChH
Q 047492 546 SHQETNF--QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKAN 623 (806)
Q Consensus 546 ~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 623 (806)
...+.|+ ....++...+.+.|++++|.+.|+........|+... +..+...+.+.|+.+
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-------------------~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-------------------LAMAADAFDQAGDKA 387 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-------------------HHHHHHHHHHcCCHH
Confidence 6666677 7788899999999999999999996554455677765 789999999999999
Q ss_pred HHHHHHHHHHh
Q 047492 624 LAWGFMREMRH 634 (806)
Q Consensus 624 ~A~~~~~~m~~ 634 (806)
+|.+++++...
T Consensus 388 ~A~~~~~~~l~ 398 (409)
T TIGR00540 388 EAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-07 Score=96.36 Aligned_cols=527 Identities=13% Similarity=0.106 Sum_probs=303.7
Q ss_pred HHHHhCCChhHHHHHHHHhHhc-cCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc
Q 047492 104 KLLHCAKLTPLMVDFLENYKKD-RYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF 182 (806)
Q Consensus 104 ~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 182 (806)
..+.++++...-...|+..... .+.-...+|...+......+-++-++.+|++..+. ++..-+--|..++..+++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccch
Confidence 3334444444444444333322 33345567777777777788888999999998865 556678888889999999
Q ss_pred chHHHHHHHHHhcCC-------CCccchHHHHHHhhccCCHH---HHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 047492 183 DAVAVVSKQISMRGF-------ENDVTRTIMLKCLCKQKKID---EAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFE 252 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (806)
++|.+.+........ .+...|..+....++.-+.- ....+++.+..+-...-...|++|.+-|.+.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 999998888865532 24446666666655543332 23344444444333334568999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC----------------------CHHHHHHHHHhhhhcCCC-------
Q 047492 253 QAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG----------------------RLDLALEFLKSKNSLEGY------- 303 (806)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~~~~~~~~------- 303 (806)
+|..+|++.... ..+...|+.+.+.|+.-. +++-.+.-|+.+.....+
T Consensus 266 karDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 266 KARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999887654 344455566655554321 122233333333321111
Q ss_pred ---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 047492 304 ---VPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD------GVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLS 374 (806)
Q Consensus 304 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (806)
..++..|..-+. ...|+..+-...+.+..+. +.|- ...|..+.+.|-..|+++.|..+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 011222222221 2345666677777777664 2231 245677788888999999999999988764332
Q ss_pred CC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCChhHHHHH
Q 047492 375 PN---GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLF----------P-------GKKTLSILADALCRDGKFEQMKDL 434 (806)
Q Consensus 375 ~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~g~~~~a~~~ 434 (806)
-- ..+|-.-...=.+..+++.|++++++...---. | +...|...++.-...|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 11 235555556667788889999988876532111 1 123455556666667888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 047492 435 VIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASE-NTYIQLIHGFNK---SNRADIAARLLVEMEE 510 (806)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~~~~~~a~~~~~~m~~ 510 (806)
++++.+..+. ++.+.......+-...-++++.++++.-...-..|+. ..|+..+.-+.+ ...++.|..+|++..+
T Consensus 500 YdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 8888887643 2222222233344555678888888776665555544 356766666554 3457889999999888
Q ss_pred CCCCCCHHhHHHHHHHHHc-cCCcHHHHHHHHHhHhhCCCCCh--hhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCc
Q 047492 511 NGHKPTRALHRAVIRCLCN-METPAKQFLQLLNMQLSHQETNF--QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQL 587 (806)
Q Consensus 511 ~~~~p~~~~~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 587 (806)
|.+|...-+..++.+-.. .-.....+...++......++.. ..||..|.--+..=.+.....+|++.++. -|+.
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~ 655 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDS 655 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChH
Confidence 666655444333333211 11112333333444333333322 23666665444433344455666666643 4444
Q ss_pred chhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHH
Q 047492 588 GSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN-GMYPSMECYEELIKLLCSTKNYDMV 660 (806)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A 660 (806)
..-.. .--....=++.|..+.|..++..--+- ..+.+...|.+.=.-=.+.|+-+..
T Consensus 656 ~~r~m----------------clrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ 713 (835)
T KOG2047|consen 656 KAREM----------------CLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTY 713 (835)
T ss_pred HHHHH----------------HHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHH
Confidence 32110 111222334567777777777655442 2333555666665555667774333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-08 Score=99.28 Aligned_cols=330 Identities=11% Similarity=-0.017 Sum_probs=233.3
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHH--hHHH
Q 047492 163 DLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGF--MIGI 240 (806)
Q Consensus 163 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ 240 (806)
.-|..-+-..--.+.+.|..+.|+..|......-|-.-.+|..|..... +.+.+ ..... +...+.. .--.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIEIL----SILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHHHH----HHHHh-cCcccchHHHHHH
Confidence 3344433333334456777788888887777654444445544443332 22222 22221 1111111 1122
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCC-CcccHHHHHHHHHh
Q 047492 241 VVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVP-EVFRFNFLVSRLLK 319 (806)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 319 (806)
+..++....+.+++.+-.+..... |.+-+...-+....+.....++++|+.+|+++........ |..+|..++-.-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 345566666778888777777776 6665555555555566678899999999999986433332 46777777643322
Q ss_pred cCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 320 ENRLM-EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYE 398 (806)
Q Consensus 320 ~~~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 398 (806)
..++. .|..+++ . -+--+.|..++.+-|.-.++.++|...|++..+.+ +.....|+.+..-|...++...|++
T Consensus 312 ~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 22221 1333222 1 12345788888899999999999999999998854 3345688888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCC
Q 047492 399 VLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNK 478 (806)
Q Consensus 399 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 478 (806)
-++...+-... |-..|-.|.++|.-.+.+.-|.-.|++..+.. +.|...|.+|..+|.+.++.++|.+.|......+-
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99999987654 88899999999999999999999999988875 67888999999999999999999999999887765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 479 VASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 479 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
. +...+..|.+.|-+.++..+|...|++-++
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 668899999999999999999999988765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-09 Score=100.47 Aligned_cols=366 Identities=10% Similarity=0.015 Sum_probs=256.6
Q ss_pred cCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCcc---c
Q 047492 126 RYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDV---T 202 (806)
Q Consensus 126 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 202 (806)
+...|...+-.....+.+.|....|+..|...... -+..|.+-+....-..+.+.+ ..+.. +.+... .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHH
Confidence 44556555555556677788999999999888754 234555544443322222222 22221 222211 1
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCc-chhhHHHHHHHH
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVK-LEKAYDVWLRNL 281 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~ 281 (806)
=--+..++-.....+++.+=.+...+.|.+.+...-+....+.....++++|+.+|+++...+.... |..+|+.++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1234455666667888888888888888866666666666677788999999999999987633332 345676665333
Q ss_pred HHcCCHH-HHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH
Q 047492 282 VRAGRLD-LALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV 360 (806)
Q Consensus 282 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 360 (806)
-.+.++. -|..+++ + . +-...|..++.+.|+-.++.++|...|+...+.+. -....|+.+.+-|....+...
T Consensus 310 ~~~skLs~LA~~v~~-i---d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSN-I---D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred hhhHHHHHHHHHHHH-h---c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHH
Confidence 2222221 1222222 1 2 23356777888889999999999999999988653 245667777788999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047492 361 AIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALE 440 (806)
Q Consensus 361 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (806)
|.+-|+...+-. +.|-..|-.|.++|.-.+...-|+-.|++..+-... |...|.+|.++|.+.++.++|++.|+....
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999988854 567889999999999999999999999998876443 788999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 441 RNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM----NKVAS--ENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 441 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.| ..+...+..|.+.|-+.++.++|...|+...+. |...+ ...---|..-+.+.+++++|..+......
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 77 557788999999999999999999888876652 22212 12223355667788888888877666544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-10 Score=108.00 Aligned_cols=207 Identities=11% Similarity=0.042 Sum_probs=147.8
Q ss_pred hhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 047492 553 QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREM 632 (806)
Q Consensus 553 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 632 (806)
.+.....++|.+.|++..+..++.++.+.+.-.+...-- + ...+|+.+++-+...+..+.-...|+..
T Consensus 188 ~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~--l----------e~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 188 EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR--L----------EQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH--H----------HHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 334444444555555555555555555444433222100 0 0013777777776666666656666665
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhh
Q 047492 633 RHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISL 712 (806)
Q Consensus 633 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 712 (806)
..+ .+.++..-.+++.-+.+.|+.++|.+++++..+.+.++... ......+-++...-.+..+......|.++..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 543 55566777788888999999999999999999998877621 2234557788888888888888888888899
Q ss_pred HHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC
Q 047492 713 LGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD 778 (806)
Q Consensus 713 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~ 778 (806)
+.+|...|.+++.+.+|...|+...+. .|+..+|+-+.+++.+ |+.++|.+++++-...-..|+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988874 7999999999999999 999999999888775434443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.5e-07 Score=93.92 Aligned_cols=668 Identities=13% Similarity=0.088 Sum_probs=356.6
Q ss_pred cCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChh
Q 047492 88 RQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDY 167 (806)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 167 (806)
.+.+.+-....|-.....|...|+++.|.++-..-++ |+-.++.|.+.+=..=...|.+.--+..|..+...| +.|..
T Consensus 352 ~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPr-gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ 429 (1666)
T KOG0985|consen 352 VRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPR-GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKY 429 (1666)
T ss_pred hhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCch-hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHH
Confidence 3344444566777778888889999999888877766 677788887777666667788888888888888776 33332
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHH-----hcCC---CCc-----------cchHHHHHHhhccCCHHHHHHHHHHhHh
Q 047492 168 AYHVLLNALVEQGCFDAVAVVSKQIS-----MRGF---END-----------VTRTIMLKCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~---~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 228 (806)
----+.+.-...|+.+....++.+=+ +.|- |.. ...+.++.+|+..|.++++.-+.. +
T Consensus 430 ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~k---K 506 (1666)
T KOG0985|consen 430 ETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAK---K 506 (1666)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHH---H
Confidence 22223333334444444444332211 1110 100 122344455555555555444333 3
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcc
Q 047492 229 GRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVF 308 (806)
Q Consensus 229 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (806)
.|..||. -.++....+ -.++.+.++...|.+..+ ....++.+.+.+...+....+..++-... .+..|+..
T Consensus 507 vGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaL--K~~~Pd~g 577 (1666)
T KOG0985|consen 507 VGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDAL--KLNSPDEG 577 (1666)
T ss_pred cCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHh--cCCChhhh
Confidence 3666663 334444444 567777777777765412 23345666666667777777777666665 34556654
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH----HH
Q 047492 309 RFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNY----LI 384 (806)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----li 384 (806)
...+-+--..-.+-. ++-+.+..++.- ...-+..+...|.+.|-...|++.|.++.+- +...+.-+. -+
T Consensus 578 ~LQTrLLE~NL~~aP----qVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwL 650 (1666)
T KOG0985|consen 578 HLQTRLLEMNLVHAP----QVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWL 650 (1666)
T ss_pred hHHHHHHHHHhccch----HHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHH
Confidence 433322111112222 222223333322 2233667778888999999999888776541 111111111 12
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----------CCCCCHHHHHHH
Q 047492 385 NSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALER-----------NIKLRDVTYDKF 453 (806)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l 453 (806)
-.|.-.-.++++.+.++.|...+++-|..+...+..-|+..=..+...++|+..... ++.-|+.+.-..
T Consensus 651 v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KY 730 (1666)
T KOG0985|consen 651 VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKY 730 (1666)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHH
Confidence 334445568889999999998888878777777777776665566666666664332 345566666678
Q ss_pred HHHHHhcCChhHHHHHHHHH------------hhc---CCCC-----CHHHHH-------------HHHHHHHhcCCHHH
Q 047492 454 ISALCKANKVEVGYLIHSEL------------SRM---NKVA-----SENTYI-------------QLIHGFNKSNRADI 500 (806)
Q Consensus 454 l~~~~~~~~~~~a~~~~~~~------------~~~---~~~~-----~~~~~~-------------~li~~~~~~~~~~~ 500 (806)
|.+.|+.|++.+.+++.++- .+. +-.| |..-+- ..|..|.+.=++.+
T Consensus 731 IqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~ 810 (1666)
T KOG0985|consen 731 IQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSR 810 (1666)
T ss_pred HHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcc
Confidence 88999999988888775432 111 1111 111111 12223332222222
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHH-------------HHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCC
Q 047492 501 AARLLVEMEENGHKPTRALHRAVIRC-------------LCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKR 567 (806)
Q Consensus 501 a~~~~~~m~~~~~~p~~~~~~~ll~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 567 (806)
.-.+...+.+ +.-+......+|.. +.+.++ .+-+..+++........|+.++|++...|...++
T Consensus 811 ~p~VvG~LLD--~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNR-LklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 811 TPQVVGALLD--VDCSEDFIKNLILSVRGQFPVDELVEEVEKRNR-LKLLLPWLESLIQEGSQDPATHNALAKIYIDSNN 887 (1666)
T ss_pred cchhhhhhhc--CCCcHHHHHHHHHHHhccCChHHHHHHHHhhhh-HHHHHHHHHHHHhccCcchHHHhhhhheeecCCC
Confidence 2222111111 11111111122211 111222 2334445666677778899999999999987654
Q ss_pred hHHH-HH---HHH-----H-HHHCCCccCc---------------------chhHHHHHHHHhhh---------------
Q 047492 568 PDLA-RA---VYE-----L-MQRSGLVPQL---------------------GSNILMLQSYLKRK--------------- 601 (806)
Q Consensus 568 ~~~a-~~---~~~-----~-m~~~~~~p~~---------------------~~~~~~~~~~~~~~--------------- 601 (806)
-.+- ++ .|+ + ..++ .|-. ..+......+.++.
T Consensus 888 nPE~fLkeN~yYDs~vVGkYCEKR--DP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~ 965 (1666)
T KOG0985|consen 888 NPERFLKENPYYDSKVVGKYCEKR--DPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPY 965 (1666)
T ss_pred ChHHhcccCCcchhhHHhhhhccc--CCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChH
Confidence 3332 11 111 1 1111 0100 00000000011100
Q ss_pred --------------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHH-----------------
Q 047492 602 --------------NGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGM--YPSMECYEELI----------------- 648 (806)
Q Consensus 602 --------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~l~----------------- 648 (806)
...|+.-.+..+.++...+-+.+-+++++++.-.+- .-+...-+.++
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~r 1045 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHH
Confidence 234555566667777777777777777777663211 00111111111
Q ss_pred ----------HHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHH
Q 047492 649 ----------KLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIG 718 (806)
Q Consensus 649 ----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 718 (806)
..+...+-+++|..+|++.. .+....+.|+. .-+.++.|.++.++. ..+.+|..+..
T Consensus 1046 LdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~-----n~p~vWsqlak 1112 (1666)
T KOG0985|consen 1046 LDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC-----NEPAVWSQLAK 1112 (1666)
T ss_pred hccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh-----CChHHHHHHHH
Confidence 11122233344444443321 11111122211 123334443333333 45567888888
Q ss_pred hhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHH
Q 047492 719 VFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDE 797 (806)
Q Consensus 719 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~e 797 (806)
+-...|...+|++-|-++ .|+..|.-.+..+.+ |.|++-...+...+.+.-+|...+ .|+.||.+.|++.|
T Consensus 1113 AQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1113 AQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHH
Confidence 888888888777755432 467888889999998 999998888877777666666544 56778888888887
Q ss_pred HHHHH
Q 047492 798 AERRL 802 (806)
Q Consensus 798 A~~~l 802 (806)
-.+++
T Consensus 1185 lE~fi 1189 (1666)
T KOG0985|consen 1185 LEEFI 1189 (1666)
T ss_pred HHHHh
Confidence 77665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-09 Score=101.07 Aligned_cols=289 Identities=12% Similarity=0.032 Sum_probs=171.8
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHhcCCHHHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVS---GFMIGIVVDALCKNSRFEQAG 255 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 255 (806)
+.+.++|.++|-+|.+..+.+..+..+|.+.|.+.|.++.|.++++.+.++.--+. ..+.-.|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34566677777776665544555566666666666666666666666655422111 112233444444555555555
Q ss_pred HHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047492 256 KLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKE 335 (806)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (806)
++|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+
T Consensus 128 ~~f~~L~de~--------------------------------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k 169 (389)
T COG2956 128 DIFNQLVDEG--------------------------------------EFAEGALQQLLNIYQATREWEKAIDVAERLVK 169 (389)
T ss_pred HHHHHHhcch--------------------------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5555544421 11123344566677777777777777777776
Q ss_pred CCCCCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 047492 336 GQISPDG----VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNG-IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFP 410 (806)
Q Consensus 336 ~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 410 (806)
.+-.+.. ..|.-+...+....+++.|..++.+..+.+ |+. ..--.+-+.....|++++|.+.++...+.+..-
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 5543322 123334444445667788888888776643 333 233344566777888888888888888776555
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 047492 411 GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIH 490 (806)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 490 (806)
-..+...|..+|...|+.++...++..+.+....++ .-..+...-....-.+.|...+.+-..+ .|+...+..+|.
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~ 323 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHH
Confidence 566777788888888888888888888777643333 3333444444444555666555544433 356777777777
Q ss_pred HHHh---cCCHHHHHHHHHHHHHC
Q 047492 491 GFNK---SNRADIAARLLVEMEEN 511 (806)
Q Consensus 491 ~~~~---~~~~~~a~~~~~~m~~~ 511 (806)
.... .|...+-+.+++.|...
T Consensus 324 ~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hhhccccccchhhhHHHHHHHHHH
Confidence 6554 34466667777777654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-06 Score=93.58 Aligned_cols=646 Identities=13% Similarity=0.084 Sum_probs=328.5
Q ss_pred CCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhc-----cCCcchhHHHHHHHHHHhcCCh
Q 047492 73 TKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKD-----RYYHQVRFNDTLVMGYALAGKP 147 (806)
Q Consensus 73 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~li~~~~~~~~~ 147 (806)
.+.+..-|.+|.-+..+.. .+...--.+.+-....|+.+.....+.+=+-. |.-.-..--+..+..|.+++-+
T Consensus 407 ~Gq~sPLLqYFg~LLdqGk--LNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp 484 (1666)
T KOG0985|consen 407 PGQPSPLLQYFGTLLDQGK--LNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVP 484 (1666)
T ss_pred CCCCCcHHHHHHHHHhccc--ccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCc
Confidence 3444445777776654442 23322233344445556656555554432211 2111111112344555555555
Q ss_pred hhHHHHHHHH----------hhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHH
Q 047492 148 DIALHLFGKM----------RFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKID 217 (806)
Q Consensus 148 ~~A~~~~~~m----------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 217 (806)
.+++..|.+. .+.|..|| |-.+|+.+.+ -..|.+.++...+.+... +..-++.+...+...+...
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~-~~~die~I~DlFme~N~iQ 559 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE-PLADIEQIVDLFMELNLIQ 559 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC-CcccHHHHHHHHHHHHhhh
Confidence 5555555443 23466776 5556666666 467888888877776544 3445677777777778888
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhh
Q 047492 218 EAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSK 297 (806)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 297 (806)
.+...+-+..+.+.+--...-+.|+..-.. +-++-|..++ .. + .-+..-+..+.+.|.++|-...|++.+..+
T Consensus 560 q~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~-~aPqVADAIL----gN-~-mFtHyDra~IAqLCEKAGL~qraLehytDl 632 (1666)
T KOG0985|consen 560 QCTSFLLDALKLNSPDEGHLQTRLLEMNLV-HAPQVADAIL----GN-D-MFTHYDRAEIAQLCEKAGLLQRALEHYTDL 632 (1666)
T ss_pred hhHHHHHHHhcCCChhhhhHHHHHHHHHhc-cchHHHHHHH----hc-c-ccccccHHHHHHHHHhcchHHHHHHhcccH
Confidence 888877777765542223333444433222 2233333322 21 1 122233778888899999999999887766
Q ss_pred hhcCCCCCCcccHHHH-----HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC-
Q 047492 298 NSLEGYVPEVFRFNFL-----VSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF- 371 (806)
Q Consensus 298 ~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 371 (806)
..- +..+ .-+.+ +-.|...-.++++.+.++.|...++..|..+...+..-|+..=..+...++|+..+..
T Consensus 633 ~DI---KR~v-Vhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~e 708 (1666)
T KOG0985|consen 633 YDI---KRVV-VHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYE 708 (1666)
T ss_pred HHH---HHHH-HHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccch
Confidence 431 1111 11111 1234445567888999999998888888777777777777665666666776665432
Q ss_pred ----------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH------------HhCC---------------CCCCHHH
Q 047492 372 ----------GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNS------------IDHG---------------LFPGKKT 414 (806)
Q Consensus 372 ----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------------~~~~---------------~~p~~~~ 414 (806)
++..|..+.-..|.+.|+.|++.+..++-++- .+.. ..+|...
T Consensus 709 GL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvl 788 (1666)
T KOG0985|consen 709 GLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVL 788 (1666)
T ss_pred hHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHH
Confidence 24455666667788889999988877775441 1111 1111111
Q ss_pred H------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH------------HHHHHHHHhcCChhHHHHHHHHHhhc
Q 047492 415 L------SILADALCRDGKFEQMKDLVIFALERNIKLRDVTY------------DKFISALCKANKVEVGYLIHSELSRM 476 (806)
Q Consensus 415 ~------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~ 476 (806)
| ...|..|.+.=++...-.+...+.+-++.- ..+- .-|+.-.-+.+++..-..+++.....
T Consensus 789 YLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E-~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~e 867 (1666)
T KOG0985|consen 789 YLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSE-DFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQE 867 (1666)
T ss_pred HHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcH-HHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 1 112333333333333222222222222110 1111 12333344455555556667777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-HHHHHH--------HHHHHHHC------------C--------CCCCHHhHHHHHHHH
Q 047492 477 NKVASENTYIQLIHGFNKSNR-ADIAAR--------LLVEMEEN------------G--------HKPTRALHRAVIRCL 527 (806)
Q Consensus 477 ~~~~~~~~~~~li~~~~~~~~-~~~a~~--------~~~~m~~~------------~--------~~p~~~~~~~ll~~~ 527 (806)
|.. |+.++|+|.+.|...++ ++.-++ +..+-.++ | +.-....|....+.+
T Consensus 868 G~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYl 946 (1666)
T KOG0985|consen 868 GSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYL 946 (1666)
T ss_pred cCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHH
Confidence 777 88999999988876554 222111 11111111 1 001112233333333
Q ss_pred HccCCcH--HHHH--------HHHHhHh---hCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchh----
Q 047492 528 CNMETPA--KQFL--------QLLNMQL---SHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSN---- 590 (806)
Q Consensus 528 ~~~~~~~--~~~~--------~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---- 590 (806)
....+.. ..+. .+.+... -....|+.-.+..+.++...+-+.+-+++++++.-. |+..+-
T Consensus 947 v~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nL 1023 (1666)
T KOG0985|consen 947 VERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNL 1023 (1666)
T ss_pred HhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---Ccccccchhh
Confidence 3333321 1110 1111111 112356667788888899999999999999998732 222211
Q ss_pred --HHHHHHHHhhh-------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 047492 591 --ILMLQSYLKRK-------NGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVV 661 (806)
Q Consensus 591 --~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 661 (806)
..++.+..... ...|-.---.+...+..++-+++|..+|++.-- +......++. ..++.+.|.
T Consensus 1024 QnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~ 1095 (1666)
T KOG0985|consen 1024 QNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAY 1095 (1666)
T ss_pred hhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHH
Confidence 11111111000 011111112234455667777888888775432 2222222322 344555555
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCC
Q 047492 662 GVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCF 741 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 741 (806)
++.+++. .+.+|..+..+-++.|...+|...+-++ .|+..|...++...+.|.+++-+.++..+.+..-
T Consensus 1096 efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1096 EFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 5554442 2244555555555555555555554444 2444455555555555666655555555555433
Q ss_pred CCChhhHHHHHHHHhh-hcHHH
Q 047492 742 PLDTYTYNILLRRLSV-SEIDH 762 (806)
Q Consensus 742 ~~~~~~~~~li~~~~~-g~~~~ 762 (806)
.|.+. ..||-+|++ ++..+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTE 1184 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHH
Confidence 33322 345555555 55444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-08 Score=100.45 Aligned_cols=281 Identities=16% Similarity=0.088 Sum_probs=197.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 047492 410 PGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLI 489 (806)
Q Consensus 410 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 489 (806)
-+........+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+.+..+. ...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence 355555566666777788888888888887765 566666666667777888877777776777766555 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChH
Q 047492 490 HGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPD 569 (806)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 569 (806)
--|...|+..+|.+.|.+... +.|. -...|-.+.+.|+-.|..+
T Consensus 320 ~YYl~i~k~seARry~SKat~--lD~~----------------------------------fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATT--LDPT----------------------------------FGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhh--cCcc----------------------------------ccHHHHHHhHHhhhcchHH
Confidence 888888888888888887654 2222 2234666666777777777
Q ss_pred HHHHHHHHHHHC--CC-ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH
Q 047492 570 LARAVYELMQRS--GL-VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYE 645 (806)
Q Consensus 570 ~a~~~~~~m~~~--~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~ 645 (806)
.|+..+....+. |. .| +-.+.--|.+.++.+.|.++|.+... +.| |+..++
T Consensus 364 QAmaaY~tAarl~~G~hlP-----------------------~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~ 418 (611)
T KOG1173|consen 364 QAMAAYFTAARLMPGCHLP-----------------------SLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLH 418 (611)
T ss_pred HHHHHHHHHHHhccCCcch-----------------------HHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhh
Confidence 777776665532 21 22 33455567777888888888877665 455 455555
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCC------CchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHh
Q 047492 646 ELIKLLCSTKNYDMVVGVMNHLEGHGRQV------TSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGV 719 (806)
Q Consensus 646 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 719 (806)
.+.-.....+.+.+|...|+..+..-... -..+.+.|...+.+.+..++|+..++.+....|.+..++.++.-.
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 55555556777888887777765221111 123467777788888889999999999988889999999999999
Q ss_pred hhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047492 720 FSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRL 755 (806)
Q Consensus 720 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 755 (806)
|...|+++.|++.|.+.+- +.||..+-..++..+
T Consensus 499 y~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999999999999887 477776666655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.3e-07 Score=90.84 Aligned_cols=573 Identities=11% Similarity=0.065 Sum_probs=334.1
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 047492 167 YAYHVLLNALVEQGCFDAVAVVSKQISMRGF--ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDA 244 (806)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (806)
..|-..+..+.+.|++......|+..+..-+ .....|...+.-....|-++-+.++++..++..+ ..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHH
Confidence 4566777777788888888888877776654 2455788888877888888888888888876543 446667777
Q ss_pred HHhcCCHHHHHHHHHHhhhCC-----CCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC--cccHHHHHHHH
Q 047492 245 LCKNSRFEQAGKLLEDFKDRD-----DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE--VFRFNFLVSRL 317 (806)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~ 317 (806)
+++.++.++|-+.+......+ ..+.+...|..+.+..+++-+.-.-+.+=.-+....+.-+| ...|++|.+.|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 888888888888887765431 22344456666666665554332222221112211222344 24577888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 047492 318 LKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAY 397 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 397 (806)
++.|.++.|..+|++....- ....-|+.+.++|+.-..-.-+..+=-.-.+.|-.-+... ++-.+
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d-------------l~~~~ 323 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD-------------LELHM 323 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh-------------HHHHH
Confidence 88888888888888776642 3455566666666653322211111100001111111111 22222
Q ss_pred HHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhc
Q 047492 398 EVLKNSIDHG-----------LFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKL------RDVTYDKFISALCKA 460 (806)
Q Consensus 398 ~~~~~m~~~~-----------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~ 460 (806)
.-|+.+...+ -.-++.+|..-+.. ..|+..+....+.++.+. +.| -...|..+.+.|-..
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhc
Confidence 2333322221 11244455444333 346677777777777654 122 224678888899999
Q ss_pred CChhHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHH
Q 047492 461 NKVEVGYLIHSELSRMNKVAS---ENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQF 537 (806)
Q Consensus 461 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 537 (806)
|+++.|..+|+...+-+.+.- ..+|..-...=.++.+++.|+++.++... .|.... +..+ ..+.+.
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~~y-d~~~pv--- 469 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LEYY-DNSEPV--- 469 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hhhh-cCCCcH---
Confidence 999999999998876544421 34455555666667788888887777653 443322 1111 111110
Q ss_pred HHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC-ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH
Q 047492 538 LQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL-VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL 616 (806)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 616 (806)
. .....+..+|...++.--..|-++....+|+++.+..+ .|..... |..+ +
T Consensus 470 Q-------~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N------------------yAmf---L 521 (835)
T KOG2047|consen 470 Q-------ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN------------------YAMF---L 521 (835)
T ss_pred H-------HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH------------------HHHH---H
Confidence 0 00112455688888877788899999999999997654 3322210 2222 2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCchhHHHHHHH--hhccc
Q 047492 617 CKAMKANLAWGFMREMRHNGMYPS-MECYEELIKLLCS---TKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH--ALKTR 690 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 690 (806)
-.+.-++++.++|++-+..=-.|+ ...|+..+.-+.+ .-.++.|..+|++.++ |.+|.-.-+-.|+.+ --+-|
T Consensus 522 Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 522 EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhh
Confidence 345557788888877665422343 3456665555443 3368889999999888 444432222222222 12447
Q ss_pred cHHHHHHHHHhhhhccCcch--hhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHH---Hhh-hcHHHHH
Q 047492 691 DLYEAWIRLRGMLINEQSKI--SLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRR---LSV-SEIDHAC 764 (806)
Q Consensus 691 ~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~-g~~~~A~ 764 (806)
-...|..+++++..+.++.. ..||..|.--+..--...-..+++++++. -||...-...++- =.+ |.+++|.
T Consensus 601 Lar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRAR 678 (835)
T KOG2047|consen 601 LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRAR 678 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 77888888888876655433 34666665444333444557788888875 4555444433322 234 8888888
Q ss_pred HHHHHHHHc-CCCCChhhHHHHHhhhhccCCHHHHHHHHH
Q 047492 765 ELFNRMRRK-GYEPDQWTFDILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 765 ~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~ 803 (806)
.+|..-.+- ..+-+..-|.+.-.-=.+.|+-+..+++|+
T Consensus 679 aIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 679 AIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 888766543 233455567766666678888666555553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-09 Score=100.41 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=115.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 047492 320 ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEV 399 (806)
Q Consensus 320 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 399 (806)
.|++.+|+++..+-.+.+-.| ...|..-..+--+.|+.+.+-.++.+..+.--.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655544332 2333334445555666666666666666542234445555555666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHH
Q 047492 400 LKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDV-------TYDKFISALCKANKVEVGYLIHSE 472 (806)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~ 472 (806)
++++.+.+.. ++.......++|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665544 45556666666666666666666666666666444332 455555555555555554455555
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047492 473 LSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPT 516 (806)
Q Consensus 473 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 516 (806)
.... ...++..-..++.-+...|+.++|.++.++..+++..|+
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 4432 222555666777777888888888888888777666665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-09 Score=99.61 Aligned_cols=288 Identities=16% Similarity=0.115 Sum_probs=198.3
Q ss_pred hcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC-C---CccchHHHHHHhhccCCHH
Q 047492 143 LAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGF-E---NDVTRTIMLKCLCKQKKID 217 (806)
Q Consensus 143 ~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~li~~~~~~g~~~ 217 (806)
-..++++|+++|-+|.+. .| +..+.-++-+.|.+.|..|+|+.+++.+.++.- + ...+...|.+-|...|-++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 356788999999999875 33 233445566777888999999999988887622 1 1125567777888899999
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcch----hhHHHHHHHHHHcCCHHHHHHH
Q 047492 218 EAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLE----KAYDVWLRNLVRAGRLDLALEF 293 (806)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~ 293 (806)
.|+.+|..+.+.+. --....-.|+..|-...++++|+++-+++... +-.+.. ..|..+...+....+.+.|..+
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999887554 23356677888999999999999998887765 333322 3456666666777888888888
Q ss_pred HHhhhhcCCCCCCcccHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 047492 294 LKSKNSLEGYVPEVFRFN-FLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372 (806)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 372 (806)
+.+..+. .|+.+--+ .+-+.....|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+..
T Consensus 203 l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8887652 33333333 3346777888999999999888887655556677888888888999988888888877743
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 047492 373 LSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD---GKFEQMKDLVIFALER 441 (806)
Q Consensus 373 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 441 (806)
+....-..+-..-....-.+.|...+.+-... +|+...+..+++.-... |...+-..+++.|...
T Consensus 280 --~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 --TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred --CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33333444444444444556666665554444 58888888888765433 3345555555555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-07 Score=94.67 Aligned_cols=118 Identities=8% Similarity=-0.007 Sum_probs=48.1
Q ss_pred HcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHH
Q 047492 283 RAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAI 362 (806)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 362 (806)
..|+.++|......-.. +-..+.+.|..+.-.+-...++++|++.|......+. .|...+.-+--.-.+.++++...
T Consensus 53 ~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHH
Confidence 34444444444443321 1122334444444444444445555555544444321 13333333333333444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 363 ELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
.......+.. +.....|..+..++.-.|+...|..++++..
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433321 1122344444444444445555555544444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-08 Score=91.53 Aligned_cols=426 Identities=13% Similarity=0.049 Sum_probs=207.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHH-HHHHHHhcC
Q 047492 243 DALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNF-LVSRLLKEN 321 (806)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~ 321 (806)
.++.+.|++++|...+..+.+. ..++...+..+..++.-.|.+.+|..+-... |+....+. +.+..-+.+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-------~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAKSIAEKA-------PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHhC
Confidence 3444556666666666555442 2333444444444455555555555554433 22222332 333344555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHcCCChhHHHHHH
Q 047492 322 RLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI-NSLCGDGSTHEAYEVL 400 (806)
Q Consensus 322 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~ 400 (806)
+-++...+.+.+... ..---+|.......-.+++|.++|+++... .|.....|.-+ -+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 555555555444331 111222333333344667777777776653 24544444433 3455666666667766
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHh
Q 047492 401 KNSIDHGLFPG-KKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKAN-----KVEVGYLIHSELS 474 (806)
Q Consensus 401 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~ 474 (806)
+--.+. .|| +...|.......+.=.-..|++-.+.+.+.+-.. -..+.-+++.+ +-+.|.+++-.+.
T Consensus 209 ~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~ 281 (557)
T KOG3785|consen 209 KVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLM 281 (557)
T ss_pred HHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHH
Confidence 665544 233 2333333333333222223333333333332111 11223333332 3456676665554
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhh
Q 047492 475 RMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQI 554 (806)
Q Consensus 475 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (806)
+.- +..--.|+-.|.+.+++.+|..+.+++.- ..|-......+..+-..
T Consensus 282 ~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG------------------------- 330 (557)
T KOG3785|consen 282 KHI----PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG------------------------- 330 (557)
T ss_pred hhC----hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh-------------------------
Confidence 332 12333455567888888888888776532 23333333333222111
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 555 YNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
.-.......+-|.+.|+..-+++..-|... --.++.+++.-..++++.+-+++.+..
T Consensus 331 -----Qe~gSreHlKiAqqffqlVG~Sa~ecDTIp------------------GRQsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 331 -----QETGSREHLKIAQQFFQLVGESALECDTIP------------------GRQSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred -----hhcCcHHHHHHHHHHHHHhccccccccccc------------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112233445555554444433332221 123444555555566666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhH-
Q 047492 635 NGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLL- 713 (806)
Q Consensus 635 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 713 (806)
.-...|...|+ +.++++..|++.+|.++|-.+....++.+..-...|...|..+++...||..+-... .+.+..++
T Consensus 388 YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLL 464 (557)
T KOG3785|consen 388 YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLL 464 (557)
T ss_pred HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHH
Confidence 43333444443 556666677777777766665544444444344445555666666666666554432 23333333
Q ss_pred HHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHH
Q 047492 714 GQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNI 750 (806)
Q Consensus 714 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 750 (806)
..+.+-|.+++++--|-+.|+.+... .|++..|..
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeG 499 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEG 499 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCC
Confidence 33445666777777777777766653 566665543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-10 Score=116.48 Aligned_cols=287 Identities=12% Similarity=0.037 Sum_probs=205.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHH-
Q 047492 392 STHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN--IKLRDVTYDKFISALCKANKVEVGYL- 468 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~- 468 (806)
+..+|...|.....+- .-+..+...+..+|...+++++++.+|+.+.+.. ..-+..+|++.+.-+-+. .+..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 4567888888754442 2244566677788888888888888888877653 122455777766554332 1222
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCC
Q 047492 469 IHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQ 548 (806)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 548 (806)
+-+++.+.+.. .+.+|.++...|.-+++.+.|++.|++.++ +.|+
T Consensus 409 Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~-------------------------------- 453 (638)
T KOG1126|consen 409 LAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPR-------------------------------- 453 (638)
T ss_pred HHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCc--------------------------------
Confidence 22334443333 778999999999999999999999998876 3332
Q ss_pred CCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 047492 549 ETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGF 628 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 628 (806)
...+|+.+.+-+.....+|.|...|+... ++.|.... +|.-+...|.+.++++.|+-.
T Consensus 454 --faYayTLlGhE~~~~ee~d~a~~~fr~Al--~~~~rhYn------------------AwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 454 --FAYAYTLLGHESIATEEFDKAMKSFRKAL--GVDPRHYN------------------AWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred --cchhhhhcCChhhhhHHHHhHHHHHHhhh--cCCchhhH------------------HHHhhhhheeccchhhHHHHH
Confidence 33445555555666677888888888877 44554432 366677888889999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccC
Q 047492 629 MREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQ 707 (806)
Q Consensus 629 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 707 (806)
|++..+ +.| +.+....+...+.+.|+.|+|++++++....+.+.....|. -...+...++..+|+..++++.+-.|
T Consensus 512 fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 512 FQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 988887 566 45566667777888899999999999888776544333332 33456677889999999999988889
Q ss_pred cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCC
Q 047492 708 SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPL 743 (806)
Q Consensus 708 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 743 (806)
.+..++-.+...|.+.|+.+.|+.-|--+.+...++
T Consensus 589 ~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 589 QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 999999999999999999999999999888864433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-07 Score=95.74 Aligned_cols=464 Identities=16% Similarity=0.069 Sum_probs=264.9
Q ss_pred CCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047492 109 AKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVV 188 (806)
Q Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 188 (806)
.+++..-.++.+.+.+ +.+....+.....-.+...|+-++|......-.... .-+.++|+.+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3444444444444444 233344444444444556677888877777666543 23667787777667777788888888
Q ss_pred HHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 047492 189 SKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVV 268 (806)
Q Consensus 189 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 268 (806)
|+.....++.|...+.-+.-.-++.|+++.....-....+..+ ..-..|..+..++.-.|++..|..+++.........
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 8888888877777777766666777777777776666665433 233567777777778888888888888887763334
Q ss_pred cchhhHHHHH------HHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 047492 269 KLEKAYDVWL------RNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDG 342 (806)
Q Consensus 269 ~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 342 (806)
|+...|.... ....+.|..++|++.+..... .+......-.+-...+.+.+++++|..++..+...+ ||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 5555554333 234567778888877766532 111122222334466778888888888888888764 666
Q ss_pred hhHHHHHH-HHHHcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 343 VTMNTVLC-FFCKAGMVDVAI-ELYKSRSEFGLSPNGIVYNYLINSLCGDGS-THEAYEVLKNSIDHGLFPGKKTLSILA 419 (806)
Q Consensus 343 ~~~~~ll~-~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 419 (806)
.-|...+. ++.+--+.-++. .+|....+. .|....-..+--....... .+..-+++..+.+.|+.+ ++..+.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 65555444 443333333333 666665442 1211111111111111122 233445566666777654 333333
Q ss_pred HHHHhcCChhHHHHHHHHHHH----CC----------CCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH
Q 047492 420 DALCRDGKFEQMKDLVIFALE----RN----------IKLRDVT--YDKFISALCKANKVEVGYLIHSELSRMNKVASEN 483 (806)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 483 (806)
.-|-.....+-.+++...+.. .| -+|+... +--++..+-+.|+++.|..+++.....-+. -+.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liE 406 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIE 406 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHH
Confidence 333222222222222222211 11 0344433 334666777888888888888877654332 233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhh
Q 047492 484 TYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAG 563 (806)
Q Consensus 484 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
.|..-.+.+...|++++|..++++..+-. .| |...-+--..-..
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD-~a-----------------------------------DR~INsKcAKYmL 450 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELD-TA-----------------------------------DRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcc-ch-----------------------------------hHHHHHHHHHHHH
Confidence 45555677788888888888888876631 12 2222112233344
Q ss_pred cCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHH--HHHHHhcCChHHHHHHHHHHHh
Q 047492 564 HVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTL--IVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 564 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+..+.++|.++.....+.|. +...+..-.++. |-.+ ..+|.+.|++.+|++-|..+..
T Consensus 451 rAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcm-----------Wf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGF--GAVNNLAEMQCM-----------WFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HccccHHHHHHHHHhhhccc--chhhhHHHhhhH-----------HHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 56788888888888877765 333322222222 4333 3467788888888877666554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-07 Score=97.77 Aligned_cols=374 Identities=13% Similarity=0.088 Sum_probs=176.4
Q ss_pred HHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC--------CCCc-cchHHHHHHh
Q 047492 140 GYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRG--------FEND-VTRTIMLKCL 210 (806)
Q Consensus 140 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~-~~~~~li~~~ 210 (806)
.|...|+.+.|.+-.+-+. +...|..+.+.|.+..+.|-|.-.+..|.... ..+. .+-..+.-..
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 3555677777666665555 34567777777777777777766666554321 0111 2222222233
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLA 290 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (806)
...|.+++|+.++.+-.+.+ .|=..|...|.+++|.++-+.-... .-..||......+-..++.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHHHHHHhhccHHHH
Confidence 45666677777666665432 2334555667777776665432211 1123555555555666667777
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 291 LEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
++.|++... |--..+..|.. +........+.+ .|...|.-....+-..|+.+.|+.+|....+
T Consensus 878 leyyEK~~~-----hafev~rmL~e------~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 878 LEYYEKAGV-----HAFEVFRMLKE------YPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHhcCC-----hHHHHHHHHHh------ChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 777765421 11111111110 000011111111 1223333333333344555555555554332
Q ss_pred CC--------------------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 047492 371 FG--------------------LSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD----- 425 (806)
Q Consensus 371 ~~--------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----- 425 (806)
.= -.-|....-.|.+.|-..|++.+|..+|.+... |...|+.|-.+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH
Confidence 00 012333344455555555555555555544331 11111111111
Q ss_pred --------C--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH--------HHhh--cCCCCCHHHH
Q 047492 426 --------G--KFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHS--------ELSR--MNKVASENTY 485 (806)
Q Consensus 426 --------g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~--~~~~~~~~~~ 485 (806)
| +.-.|-..|++ .|. -+..-+..|-+.|.+.+|+++.= ++.. .+...|+...
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 1 11112222222 110 11223345666666666665421 1122 2333477777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHh--hCCCCChh----hHHHHH
Q 047492 486 IQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQL--SHQETNFQ----IYNFFI 559 (806)
Q Consensus 486 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~l~ 559 (806)
+...+-|+.+.++++|..++...++ |...+..|...+-. ...++.++.- +...|+.. +...+.
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv~--vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNVR--VTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCc--hhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 7777888888888888888777655 44445555444432 1222222211 11223332 356667
Q ss_pred HhhhcCCChHHHHHHHHH
Q 047492 560 DGAGHVKRPDLARAVYEL 577 (806)
Q Consensus 560 ~~~~~~~~~~~a~~~~~~ 577 (806)
..|.+.|.+..|-+-|.+
T Consensus 1153 e~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHhccchHHHHHHHhh
Confidence 777788887777665544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-08 Score=96.78 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=104.0
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH--------HHHhCCCCCCchh
Q 047492 609 YNTLIVGLCK--AMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMN--------HLEGHGRQVTSFI 678 (806)
Q Consensus 609 ~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~ 678 (806)
+..++..+.+ ...+..|..++...-+....-+....-..+......|+++.|.+++. .+.+.+..|. +
T Consensus 342 ~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~ 419 (652)
T KOG2376|consen 342 FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--T 419 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--H
Confidence 4555555443 22456666666666553222234455556666778888888888888 6666555554 3
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhh-------hccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHH
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGML-------INEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNIL 751 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 751 (806)
...++..+++.++...|...+.++. .+...-..++..++..-.+.|+.++|...++++.+. .++|..+...+
T Consensus 420 V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~l 498 (652)
T KOG2376|consen 420 VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQL 498 (652)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHH
Confidence 3445556666666555655555554 222222333444455556779999999999999997 58899999999
Q ss_pred HHHHhhhcHHHHHHHHHHHH
Q 047492 752 LRRLSVSEIDHACELFNRMR 771 (806)
Q Consensus 752 i~~~~~g~~~~A~~~~~~m~ 771 (806)
+.+|+.=+.++|..+-..+.
T Consensus 499 V~a~~~~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 499 VTAYARLDPEKAESLSKKLP 518 (652)
T ss_pred HHHHHhcCHHHHHHHhhcCC
Confidence 99999978888887755543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.6e-07 Score=92.50 Aligned_cols=94 Identities=14% Similarity=0.001 Sum_probs=54.6
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHH--HHHHHHHcCCCCChhhHHHHHHHHh
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIE--GLQKMIEQCFPLDTYTYNILLRRLS 756 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~li~~~~ 756 (806)
|+.....+...|...+|...|..+..-.|.++.+..++...+...|+..-|.. ++.++.+.+ +.+...|-.+...+.
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFK 765 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33333444444555555555555555555556666666666666665555555 666666653 455666666666666
Q ss_pred h-hcHHHHHHHHHHHHHc
Q 047492 757 V-SEIDHACELFNRMRRK 773 (806)
Q Consensus 757 ~-g~~~~A~~~~~~m~~~ 773 (806)
+ |+.++|.+.|+-..+.
T Consensus 766 ~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQL 783 (799)
T ss_pred HccchHHHHHHHHHHHhh
Confidence 6 7777777666665543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=84.16 Aligned_cols=49 Identities=35% Similarity=0.678 Sum_probs=46.8
Q ss_pred CChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhc
Q 047492 743 LDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYN 791 (806)
Q Consensus 743 ~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 791 (806)
||..+||++|.+|++ |++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 799999999999999 9999999999999999999999999999999985
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-06 Score=82.21 Aligned_cols=457 Identities=11% Similarity=0.044 Sum_probs=258.3
Q ss_pred HHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc
Q 047492 103 FKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF 182 (806)
Q Consensus 103 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 182 (806)
++-+...+++..|..+++.-...+-.....+---+..++-+.|++++|+.+|..+.+.. .|+...+-.+..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34445566677777777665543322222333334556777899999999999887643 55666666666666667888
Q ss_pred chHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 183 DAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
.+|..+-.... .++.....|.....+.|+-++-..+.+.+...- .---+|.+...-.-.+++|++++.+..
T Consensus 108 ~eA~~~~~ka~----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKAP----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhCC----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877654442 344455566666677788777777666654321 223344455445566889999998887
Q ss_pred hCCCCCcchhhHHHH-HHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047492 263 DRDDVVKLEKAYDVW-LRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD 341 (806)
Q Consensus 263 ~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 341 (806)
.. .|+-...|.- .-+|.+..-++-+.++++-..+. ++.++..-|.......+.=.-..|..-.+++...+-..
T Consensus 179 ~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 179 QD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred hc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 54 3444444443 33566777777777777766542 22233444444433333222223333344444432111
Q ss_pred hhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 047492 342 GVTMNTVLCFFCKA-----GMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLS 416 (806)
Q Consensus 342 ~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 416 (806)
| ..+.-.++. .+-+.|++++-.+.+. -|. .--.|+-.|.+.+++.+|..+.+++.-. .|-.....
T Consensus 253 ---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilK 322 (557)
T KOG3785|consen 253 ---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILK 322 (557)
T ss_pred ---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHH
Confidence 1 122333333 2346777777666542 232 2334566688899999999988775421 23333322
Q ss_pred HHHHHH-----HhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 047492 417 ILADAL-----CRDGKFEQMKDLVIFALERNIKLRDV-TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIH 490 (806)
Q Consensus 417 ~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 490 (806)
.+..+- .......-|.+.|...-+.+...|.. --.++..++.-..+++++.-+++.+..--...|...| .+..
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQ 401 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQ 401 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHH
Confidence 222221 11123455777777665555444433 2344556666677888888888877665444344444 4778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHH
Q 047492 491 GFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDL 570 (806)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 570 (806)
+++..|++.+|.++|-++....++ |..+|.+ .+.+.|.++++++.
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s----------------------------------~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKS----------------------------------MLARCYIRNKKPQL 446 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHH----------------------------------HHHHHHHhcCCchH
Confidence 888899999999988776532221 2233332 33455666677777
Q ss_pred HHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047492 571 ARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECY 644 (806)
Q Consensus 571 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 644 (806)
|.+++-++.. ..+..+ ....+...|.+.+.+--|.+.|+.+.. +.|+++.|
T Consensus 447 AW~~~lk~~t---~~e~fs------------------LLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 447 AWDMMLKTNT---PSERFS------------------LLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHhcCC---chhHHH------------------HHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 7666544431 122211 133445567777777777777776665 44554433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-07 Score=93.91 Aligned_cols=294 Identities=11% Similarity=0.089 Sum_probs=201.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHH-h-
Q 047492 101 AIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALV-E- 178 (806)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~- 178 (806)
-...++...|+++.|.+.|+.-.. .+.............+.+.|+.++|..+|..+.+. .|+...|...+..+. -
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhh
Confidence 345677889999999999988666 45666777788889999999999999999999988 677776666655554 1
Q ss_pred ----cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCH-HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 047492 179 ----QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKI-DEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 179 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
..+.+....+|+++....+... +...+.-.+..-..+ ..+..++..+..+|+ | .+|+.|-..|......+-
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~-~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-P--slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSD-APRRLPLDFLEGDEFKERLDEYLRPQLRKGV-P--SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCcccc-chhHhhcccCCHHHHHHHHHHHHHHHHhcCC-c--hHHHHHHHHHcChhHHHH
Confidence 1245677888888877654322 222222122221222 345566777778887 3 356677777776666666
Q ss_pred HHHHHHHhhhCC-------------CCCcchh--hHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-cccHHHHHHHH
Q 047492 254 AGKLLEDFKDRD-------------DVVKLEK--AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-VFRFNFLVSRL 317 (806)
Q Consensus 254 A~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~ 317 (806)
..+++..+.... ...|+.. ++.-+...|...|++++|++++++..+. .|+ +..|..-...+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~Karil 238 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH
Confidence 666666654320 1234443 4455677788899999999999987652 455 55677777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHc
Q 047492 318 LKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGI------VY--NYLINSLCG 389 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~ 389 (806)
-..|++.+|.+.++....... -|...=+-....+.+.|++++|.+++......+..|-.. .| .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998887643 366666667777888999999999988887655433221 11 334567888
Q ss_pred CCChhHHHHHHHHHHh
Q 047492 390 DGSTHEAYEVLKNSID 405 (806)
Q Consensus 390 ~g~~~~a~~~~~~m~~ 405 (806)
.|++..|++.|....+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8888888777766553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-09 Score=113.60 Aligned_cols=198 Identities=10% Similarity=-0.016 Sum_probs=139.9
Q ss_pred CChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 047492 550 TNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFM 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 629 (806)
.++..+..+...+...|++++|...|++..+. .|+... .|..+...+...|++++|...+
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~------------------a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISAD------------------IKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHH------------------HHHHHHHHHHHCCCHHHHHHHH
Confidence 35666777777788889999999999998854 566543 3777888899999999999999
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCc
Q 047492 630 REMRHNGMYPSM-ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQS 708 (806)
Q Consensus 630 ~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 708 (806)
++..+. .|+. ..+..++..+...|++++|...++++.+...+.++..+..+...+...|+.++|...+.++....+.
T Consensus 396 ~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 396 NECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 999884 4542 2233344456678899999999998876653334455666777778899999999999888777777
Q ss_pred chhhHHHHHHhhhccccchhhHHHHHHHHHcC-CCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcC
Q 047492 709 KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQC-FPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKG 774 (806)
Q Consensus 709 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g 774 (806)
+....+.+...|...|+ +|...++++.+.. ..+....+..+ .|.- |+-+.+. +|+++.+.|
T Consensus 474 ~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~-~~~~~~~~~ 536 (553)
T PRK12370 474 GLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEK-MWNKFKNED 536 (553)
T ss_pred hHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHH-HHHHhhccc
Confidence 77777888888888884 7777777776632 23333333333 3444 5665554 447776553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.8e-09 Score=100.65 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 047492 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248 (806)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (806)
+..+...+...|++++|...+++..+..+.+...+..+...+...|++++|.+.+++..+... .+...+..+...+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc
Confidence 333333444444444444444444433333333444444444444444444444444443322 1223333444444444
Q ss_pred CCHHHHHHHHHHhh
Q 047492 249 SRFEQAGKLLEDFK 262 (806)
Q Consensus 249 g~~~~A~~~~~~~~ 262 (806)
|++++|.+.+++..
T Consensus 113 g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 113 GKYEQAMQQFEQAI 126 (234)
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-05 Score=83.01 Aligned_cols=266 Identities=14% Similarity=0.089 Sum_probs=159.5
Q ss_pred CCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHH-------------
Q 047492 91 HFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKM------------- 157 (806)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m------------- 157 (806)
....+......+..+|.+..-++.+-++++.+..- ...+..|.+-.-+.+|+++-.-.
T Consensus 643 ~l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~kaielarfafp~evv~lee~wg 713 (1636)
T KOG3616|consen 643 ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWG 713 (1636)
T ss_pred HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHh
Confidence 34456667777777888777777777777776542 22223333322233333332111
Q ss_pred ---hhcCCCCCh--------hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHh
Q 047492 158 ---RFQGMDLDD--------YAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQL 226 (806)
Q Consensus 158 ---~~~~~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 226 (806)
...| +.|. ......+.+-.....|.+|+.+++.+..... ....|..+...|+..|+++.|+++|-+.
T Consensus 714 ~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 714 DHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhc
Confidence 0000 0010 0111223333455667777777776654422 2235777788888888888888887553
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC
Q 047492 227 VSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE 306 (806)
Q Consensus 227 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 306 (806)
..++-.|.+|.+.|+++.|.++-++.. +.......|.+-..-+-+.|++.+|.+++-.+.. |+
T Consensus 792 ---------~~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~ 854 (1636)
T KOG3616|consen 792 ---------DLFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PD 854 (1636)
T ss_pred ---------chhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----ch
Confidence 245667788888888888888777655 3344556666666777778888888887765532 43
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047492 307 VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINS 386 (806)
Q Consensus 307 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 386 (806)
..|..|-+.|..++.+++.++-... .-..|...+..-|-..|++..|+.-|-+..+ |.+-+..
T Consensus 855 -----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnm 917 (1636)
T KOG3616|consen 855 -----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNM 917 (1636)
T ss_pred -----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHH
Confidence 3467778888888877777643221 1123445556666777888888777655432 5556667
Q ss_pred HHcCCChhHHHHHHH
Q 047492 387 LCGDGSTHEAYEVLK 401 (806)
Q Consensus 387 ~~~~g~~~~a~~~~~ 401 (806)
|-.++.|++|.++-+
T Consensus 918 yk~s~lw~dayriak 932 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhhHHHHHHHHh
Confidence 777777777766644
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.6e-07 Score=92.94 Aligned_cols=298 Identities=16% Similarity=0.058 Sum_probs=173.0
Q ss_pred HHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHHc---
Q 047492 280 NLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV-LCFFCKA--- 355 (806)
Q Consensus 280 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~--- 355 (806)
.+...|++++|++.++... ..+.............+.+.|+.++|..++..+.+.+ ||...|-.. ..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3455566666666665532 1222223444455566677777777777777777664 444444333 3333111
Q ss_pred --CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047492 356 --GMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTH-EAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMK 432 (806)
Q Consensus 356 --g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (806)
.+.+....+|+++.+. -|.......+.-.+.....+. .+..++..+...|+++ +|+.|-..|....+..-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2455666667666553 243333333332222222232 3445555566666542 4555555555444444445
Q ss_pred HHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 433 DLVIFALER----N----------IKLRD--VTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 433 ~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
+++...... + -+|+. .++.-+...|...|++++|.+++++..+..+. .+..|..-.+.+...|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 555544322 1 12333 24455667777888888888888888877655 5777888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHH
Q 047492 497 RADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYE 576 (806)
Q Consensus 497 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 576 (806)
++.+|.+.++..+... ..|..+-+-....+.++|++++|.+++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD------------------------------------~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD------------------------------------LADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred CHHHHHHHHHHHHhCC------------------------------------hhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888877631 1233344455666778899999999988
Q ss_pred HHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 577 LMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 577 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
...+.+..| .....-.++. +-......+|.+.|++..|++.|..+.+
T Consensus 287 ~Ftr~~~~~--~~~L~~mQc~---------Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 287 LFTREDVDP--LSNLNDMQCM---------WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred hhcCCCCCc--ccCHHHHHHH---------HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 887766522 2211111211 0124567789999999999888776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-06 Score=84.45 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=104.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh-------hccCcchhhHHHHHHhhhccccchh
Q 047492 656 NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML-------INEQSKISLLGQLIGVFSGCIKVSQ 728 (806)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~ 728 (806)
.+..+.+++...-+........+.-..+......|+.+.|++++.... ......+.+..++...|.+.++.+.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 577788888777665444434445555666778999999999998322 4455667788888999999999998
Q ss_pred hHHHHHHHHHc--CCCCChhhHHHHHHHH----hh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHH
Q 047492 729 DIEGLQKMIEQ--CFPLDTYTYNILLRRL----SV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERR 801 (806)
Q Consensus 729 A~~~~~~~~~~--~~~~~~~~~~~li~~~----~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~ 801 (806)
|..++.++.+. ...+.....++++.-. .+ |+.++|..+++++... -++|..+...++.+|++. +.+.|..+
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 99998888763 1233334444444333 34 9999999999999975 456888888999999875 44666665
Q ss_pred HHh
Q 047492 802 LEE 804 (806)
Q Consensus 802 l~~ 804 (806)
-..
T Consensus 514 ~k~ 516 (652)
T KOG2376|consen 514 SKK 516 (652)
T ss_pred hhc
Confidence 443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.9e-09 Score=100.19 Aligned_cols=194 Identities=8% Similarity=-0.041 Sum_probs=161.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 47788899999999999999999998742 334677788888999999999999999999887543 4456677788889
Q ss_pred ccccHHHHHHHHHhhhhcc--CcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINE--QSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHAC 764 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~ 764 (806)
..|+.++|...++++.... +.....+..+...|...|+.++|...+++..+. .+.+...+..+...+.. |++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999997532 344556777888999999999999999999986 34456778888888888 9999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 765 ELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 765 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
..+++.... ...+...+..+...+...|+.++|.++.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999877 3446667777888889999999999987764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.2e-06 Score=85.61 Aligned_cols=261 Identities=14% Similarity=0.146 Sum_probs=155.8
Q ss_pred CccchHHHHH--HhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--------C
Q 047492 199 NDVTRTIMLK--CLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDV--------V 268 (806)
Q Consensus 199 ~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~ 268 (806)
|..|...+++ -|...|+.+.|.+-.+-+.+ ..+|..|.++|.+..+.|-|.-.+-.|....|. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555553 35567888888777766653 356888888888888877777666666543111 1
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047492 269 KLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV 348 (806)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 348 (806)
|+ .+-..+.-.....|.+++|+.+|.+.+. |..|=..|-..|.|++|.++-+.--.-.+ ..||...
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence 11 1222222233456777777777776654 33344455566777777776653222111 2344444
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKF 428 (806)
Q Consensus 349 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 428 (806)
...+-..++.+.|++.|++... |--..+..|. .+......+.+++. |...|..-..-+...|+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccch
Confidence 4455556677777777764321 1112222221 12222233333322 334555555556677888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 429 EQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEM 508 (806)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 508 (806)
+.|..++....+ |-++++..|-.|+.++|.++.++-. |......+.+.|-..|++.+|..+|.+.
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888888876543 4567778888899999988876542 5566677889999999999999999887
Q ss_pred HH
Q 047492 509 EE 510 (806)
Q Consensus 509 ~~ 510 (806)
+.
T Consensus 994 qa 995 (1416)
T KOG3617|consen 994 QA 995 (1416)
T ss_pred HH
Confidence 64
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.8e-06 Score=84.57 Aligned_cols=206 Identities=11% Similarity=0.014 Sum_probs=113.0
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHH
Q 047492 303 YVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPN-GIVYN 381 (806)
Q Consensus 303 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 381 (806)
+..|...|..+.-++...|+++.+.+.|++.... ..-....|..+-..|...|.-..|..+++.-....-.|+ ...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456666666666777777777777777766542 223455666666667777777777777766443221132 22222
Q ss_pred HHHHHH-HcCCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCC
Q 047492 382 YLINSL-CGDGSTHEAYEVLKNSIDH--GL--FPGKKTLSILADALCRD-----------GKFEQMKDLVIFALERNIKL 445 (806)
Q Consensus 382 ~li~~~-~~~g~~~~a~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 445 (806)
..-..| -+.+..++++.+-.+.... +. ......|..+.-+|... ....++.+.+++.++.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 222222 2345666666666655541 11 11223333333333221 113345566666655542 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
|....-.+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22222223334556667777777777777665555677777777777777777777777766554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-06 Score=84.42 Aligned_cols=197 Identities=11% Similarity=0.047 Sum_probs=110.6
Q ss_pred HHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc
Q 047492 103 FKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF 182 (806)
Q Consensus 103 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 182 (806)
-..|...|+++.+..-+-+.. .....+.+-..+..|.+|+.+++.+... +.-.--|..+.+.|+..|++
T Consensus 713 g~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhH
Confidence 344455555555544333221 1223455566777888888888887765 22344567777788888888
Q ss_pred chHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 183 DAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
+.|+++|-+. ..++-.|..|.+.|++++|.++-++.. |.......|-+-..-+-+.|++.+|++++-.+.
T Consensus 782 e~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 782 EIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 8888877544 245666778888888888887766553 333334445444444445555555544442211
Q ss_pred hC---------C-----------CCCcc--hhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhc
Q 047492 263 DR---------D-----------DVVKL--EKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKE 320 (806)
Q Consensus 263 ~~---------~-----------~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 320 (806)
.. . ...|+ ..|...+..-+-..|++..|...|-+..+ |.+.++.|-..
T Consensus 852 ~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s 921 (1636)
T KOG3616|consen 852 EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKAS 921 (1636)
T ss_pred CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhh
Confidence 10 0 00111 12344455555566666666666655432 55556666666
Q ss_pred CCHHHHHHHH
Q 047492 321 NRLMEVFDLF 330 (806)
Q Consensus 321 ~~~~~a~~~~ 330 (806)
+-|++|.++-
T Consensus 922 ~lw~dayria 931 (1636)
T KOG3616|consen 922 ELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHH
Confidence 6666665544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.2e-09 Score=94.96 Aligned_cols=236 Identities=14% Similarity=0.078 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 047492 376 NGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTY-DKFI 454 (806)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 454 (806)
|-.--+-+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-.+|.+..+++.|..++.+-++. .|-.+|| ..+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3333455667777777777777777766655 345556666777777777777777777765554 2333333 3455
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcH
Q 047492 455 SALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPA 534 (806)
Q Consensus 455 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 534 (806)
+.+-..++.++|.++++...+.... ++.....+...|.-.++++.|+.+|+++.+.|+.
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-------------------- 356 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-------------------- 356 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--------------------
Confidence 5666666666666666666655443 4555555555566666666666666666655433
Q ss_pred HHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHH
Q 047492 535 KQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIV 614 (806)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 614 (806)
++..|+.+.-.|.-.++++-++.-|++....-..|+... ..|..+..
T Consensus 357 ----------------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aa-----------------DvWYNlg~ 403 (478)
T KOG1129|consen 357 ----------------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAA-----------------DVWYNLGF 403 (478)
T ss_pred ----------------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhh-----------------hhhhccce
Confidence 233444444444455555555555555554333333322 12444555
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 047492 615 GLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH 670 (806)
Q Consensus 615 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 670 (806)
.....|++.-|.+.|+-...++ ..+.+.++.+.-.-.+.|++++|..+++.....
T Consensus 404 vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 404 VAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred eEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 5555566666666665555432 223444555555555566666666666555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-08 Score=106.37 Aligned_cols=182 Identities=14% Similarity=0.054 Sum_probs=84.8
Q ss_pred cchHHHHHHHHHhcCCCCccchHHHHHHhh---------ccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 047492 182 FDAVAVVSKQISMRGFENDVTRTIMLKCLC---------KQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFE 252 (806)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (806)
+++|...|++..+..+.+...|..+..++. ..+++++|...+++..+.++ .+..++..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHH
Confidence 345555555555555444444444433322 12234555555555555443 33444555555555555555
Q ss_pred HHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHH
Q 047492 253 QAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEV-FRFNFLVSRLLKENRLMEVFDLFM 331 (806)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~ 331 (806)
+|...|++.... .+.+...+..+...+...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++
T Consensus 356 ~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 356 VGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 555555555543 1222334444555555555555555555555432 2221 112222223444555555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047492 332 DMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRS 369 (806)
Q Consensus 332 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 369 (806)
+..+...+-+...+..+..++...|+.++|...++++.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55443211122334444444555555555555555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.9e-06 Score=79.50 Aligned_cols=288 Identities=12% Similarity=-0.047 Sum_probs=171.2
Q ss_pred hcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 424 RDGKFEQMKDLVIFALER-NIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
-.++...+...+-.+... -++.|.+....+...+...|+.++|+..|+.....++. +..........+.+.|+++...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHH
Confidence 344444444444433332 34556667777777777777777777777776554433 2223333333445566666666
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCC
Q 047492 503 RLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSG 582 (806)
Q Consensus 503 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 582 (806)
.+...+... .......|-.-+......+++..|+.+-++.++.
T Consensus 287 ~L~~~Lf~~------------------------------------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~- 329 (564)
T KOG1174|consen 287 ALMDYLFAK------------------------------------VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS- 329 (564)
T ss_pred HHHHHHHhh------------------------------------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc-
Confidence 555555431 1112222333333334456677777777766633
Q ss_pred CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHH
Q 047492 583 LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVV 661 (806)
Q Consensus 583 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 661 (806)
.|+... .|-.-...+...|++++|.-.|+..+. +.| +..+|.-++.+|...|++.+|.
T Consensus 330 -~~r~~~------------------alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 330 -EPRNHE------------------ALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred -Ccccch------------------HHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHH
Confidence 343322 243444556677777777777777765 454 5677777777777777777777
Q ss_pred HHHHHHHhCCCCCCchhHHHHH-HHh-hccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 662 GVMNHLEGHGRQVTSFIGNTLL-LHA-LKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
-+.+...+. +..+..+...+. ..+ .....-++|.++++......|......+.+...+...|+.++++.++++....
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 666554433 122222222221 111 12334567777777777777777777777778888888888888888877763
Q ss_pred CCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 740 CFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 740 ~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.||...-+.|.+.+.. +.+.+|++.|....+.
T Consensus 468 --~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 468 --FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred --ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6777777777777777 7777777776665543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-08 Score=91.31 Aligned_cols=229 Identities=8% Similarity=0.029 Sum_probs=123.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHH
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLL 318 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 318 (806)
+.+..+|.+.|.+.+|...|+.-... .|-+.||..+-++|.+-.++..|+.++.+-.+ .++-|+....-+.+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHH
Confidence 45566666666666666666655543 34445566666666666666666666665543 22222222233444555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 319 KENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYE 398 (806)
Q Consensus 319 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 398 (806)
..++.++|.++++...+.. +.++....++...|.-.++.+-|++.|+++.+.|+ .+...|+.+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 5566666666666655532 12444444555555555666666666666666664 345555555555666666666666
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047492 399 VLKNSIDHGLFPG--KKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 399 ~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 475 (806)
-|.+....-..|+ ..+|..+-......|++..|.+.|+-.+..+ ......++.|.-.-.+.|+++.|..+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6655553322222 2234444444445555555655555555444 33344555555555555555555555555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.4e-07 Score=83.04 Aligned_cols=352 Identities=13% Similarity=0.066 Sum_probs=179.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
.-+++.+..+.+..++.+|++++..-.+. .| +......+..+|....++..|.+.|+++-...+.-..--.--...+
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 33455555556666677777766666555 33 4444555555555666666666666666554332211111223444
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVD--ALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLD 288 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (806)
-+.+.+.+|.++...|... ++...-..-+. .....+++..+..++++.... + +..+.+.......+.|+.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-N---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-C---ccchhccchheeeccccHH
Confidence 5556666666666666442 11111111111 122345666666666555432 1 1122233333344666666
Q ss_pred HHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHH---HH
Q 047492 289 LALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIE---LY 365 (806)
Q Consensus 289 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~---~~ 365 (806)
.|.+-|+...+..|+.|- ..||..+. ..+.|+...|++...++.++|++..+.. ++ |...+... +=
T Consensus 162 aAvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPEl-gI--------Gm~tegiDvrsvg 230 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPEL-GI--------GMTTEGIDVRSVG 230 (459)
T ss_pred HHHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCcc-Cc--------cceeccCchhccc
Confidence 666666666665555443 34554443 3345566666666666666665422111 00 00000000 00
Q ss_pred H--HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 366 K--SRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSID-HGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 366 ~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
+ .|... .-+..+|.-...+.+.|+++.|.+-+-+|.- .....|+.|...+.-.- ..+++.+..+-+.-+.+.+
T Consensus 231 Nt~~lh~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 231 NTLVLHQS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred chHHHHHH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC
Confidence 0 00000 0012334344456678899999998888873 22345666665443221 2345666666666666665
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 443 IKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKV-ASENTYIQLIHGFNKSNRADIAARLLVEM 508 (806)
Q Consensus 443 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 508 (806)
+....||..++-.||+..-++.|-.++.+-...... .+...|+.+=..-...-..++|.+-++.+
T Consensus 307 -PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 307 -PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred -CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456678888899999998888888877553222111 13344443332223344566666555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.4e-08 Score=98.98 Aligned_cols=251 Identities=14% Similarity=0.029 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 047492 448 VTYDKFISALCKANKVEVGYLIHSELSRM-----NK-VASE-NTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALH 520 (806)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 520 (806)
.+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++..-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 34555666777777777777766655433 11 1112 22345777888999999999999998651
Q ss_pred HHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHH---C--CC-ccCcchhHHHH
Q 047492 521 RAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQR---S--GL-VPQLGSNILML 594 (806)
Q Consensus 521 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~--~~-~p~~~~~~~~~ 594 (806)
....+... .+.-..+++.|...|.+.|++++|...++...+ . +. .|...+
T Consensus 271 --~e~~~G~~-----------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~----- 326 (508)
T KOG1840|consen 271 --REEVFGED-----------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA----- 326 (508)
T ss_pred --HHHhcCCC-----------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH-----
Confidence 00010000 011233577788889999999998888876553 1 21 122222
Q ss_pred HHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 047492 595 QSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN---GMYP----SMECYEELIKLLCSTKNYDMVVGVMNHL 667 (806)
Q Consensus 595 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 667 (806)
.++.++..|+..+++++|..+++...+. -+.+ -..+++.|...|...|++++|.++++++
T Consensus 327 -------------~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 327 -------------QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred -------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3778888899999999999999876652 1222 2457888999999999999999999887
Q ss_pred HhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc----C--C
Q 047492 668 EGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ----C--F 741 (806)
Q Consensus 668 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~ 741 (806)
......... .........++.|...|...++..+|..+|.+.... | .
T Consensus 394 i~~~~~~~~---------------------------~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 394 IQILRELLG---------------------------KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHhccc---------------------------CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 654211100 001111233456666666666666666666655432 1 2
Q ss_pred CCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 742 PLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 742 ~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
+....+|..|...|.. |++++|.++.+.+.
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2335678888888888 99999888876655
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-05 Score=84.82 Aligned_cols=575 Identities=10% Similarity=-0.035 Sum_probs=277.9
Q ss_pred cchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 047492 182 FDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDF 261 (806)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 261 (806)
...+...|-+..+..+.-...|..|...|+..-+...|.+.|+...+.+. -+...+....+.|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 34444444444444333344677777777776677777777777766553 45566677777777777777777774332
Q ss_pred hhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047492 262 KDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD 341 (806)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 341 (806)
.+......-..-|-..--.|.+.++...|..-|+.... --+.|...|..+..+|...|++..|.++|.+.... .|+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 22201101111222223335566777777777776653 22345667777777777777777777777766542 343
Q ss_pred hhhHHHH--HHHHHHcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-------C
Q 047492 342 GVTMNTV--LCFFCKAGMVDVAIELYKSRSEF------GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSID-------H 406 (806)
Q Consensus 342 ~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~ 406 (806)
. +|... ...-+..|.+.+|...+..+... +..--..++-.+...+.-.|-..+|..++++-++ +
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2 22222 22335567777777776665431 1011112232333333333333344444443222 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---h---HHHHHHHHHhhcCCCC
Q 047492 407 GLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKV---E---VGYLIHSELSRMNKVA 480 (806)
Q Consensus 407 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~ 480 (806)
...-+...|-.+-+ +..+|-... .+ .|+......+..-.-+.+.. | .+.+.+-. ......
T Consensus 708 ~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAI 773 (1238)
T ss_pred hhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhh
Confidence 11111122221111 222222211 11 23332222222212222222 1 11111111 111111
Q ss_pred CHHHHHHHHHHHHh----cC----CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCCh
Q 047492 481 SENTYIQLIHGFNK----SN----RADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNF 552 (806)
Q Consensus 481 ~~~~~~~li~~~~~----~~----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (806)
+..+|..++..|.+ .+ +...|+..+...++ ...+...+-..+......+...-... ..-......+...
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQH-CfIks~~sep~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQH-CFIKSRFSEPTCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHhhccchhhhhhh-hhhhhhhccccch
Confidence 34455555544433 11 23456677776665 33444444444444444344211111 1112223334456
Q ss_pred hhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 047492 553 QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREM 632 (806)
Q Consensus 553 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 632 (806)
.+|..+.-.+.+..+++.|...|...+ .+.|+... .|--....-...|+.-++..+|..-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~q--SLdP~nl~------------------~WlG~Ali~eavG~ii~~~~lfaHs 910 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQ--SLDPLNLV------------------QWLGEALIPEAVGRIIERLILFAHS 910 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhh--hcCchhhH------------------HHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 668888888889999999999999988 44565432 2544444445577777777777762
Q ss_pred Hh----CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---------CCCCCchhHHHHHHHhhccccHHHHHHHH
Q 047492 633 RH----NGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH---------GRQVTSFIGNTLLLHALKTRDLYEAWIRL 699 (806)
Q Consensus 633 ~~----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 699 (806)
-+ .|--+...-|......-...|+.++-+...+.+... +.+.+.+.|...+...-..+....|....
T Consensus 911 ~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela 990 (1238)
T KOG1127|consen 911 DELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELA 990 (1238)
T ss_pred HHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22 233444433333333344566655544443333221 23334445555544444555555555555
Q ss_pred Hhhhh--ccCcchhhHH----HHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhhhcHHHHHHHHHHHHHc
Q 047492 700 RGMLI--NEQSKISLLG----QLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRK 773 (806)
Q Consensus 700 ~~~~~--~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~g~~~~A~~~~~~m~~~ 773 (806)
.+... ...-+...+| .....+...|.++.|...+..... .-+..+-.+-+..+.+++++++.+.|++...-
T Consensus 991 ~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~lFfkndf~~sl~~fe~aLsi 1067 (1238)
T KOG1127|consen 991 TRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTLFFKNDFFSSLEFFEQALSI 1067 (1238)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhh
Confidence 55431 1122223333 334445555666654433322211 11222222223334448888888888887744
Q ss_pred -CCCCCh-hhHHHHHhhhhccCCHHHHHHHH
Q 047492 774 -GYEPDQ-WTFDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 774 -g~~p~~-~~~~~l~~~~~~~g~~~eA~~~l 802 (806)
.-+-|. +....++-+....|..+.|...+
T Consensus 1068 s~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1068 SNSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred cccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 222232 33445666666777777776654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-07 Score=96.83 Aligned_cols=176 Identities=14% Similarity=0.042 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhh---c--CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSR---M--NK-VASE-NTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHR 521 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~--~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 521 (806)
+++.|..+|.+.|++++|...++...+ . +. .|.. ..++.+...+...+++++|..++....+.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i---------- 354 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI---------- 354 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH----------
Confidence 444455555666666655555444321 1 11 1112 23566677788888899998888865541
Q ss_pred HHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC----CCccCcchhHHHHHHH
Q 047492 522 AVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS----GLVPQLGSNILMLQSY 597 (806)
Q Consensus 522 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~~~~~~ 597 (806)
+..++ ......-+.+++.+...|.+.|++++|.++|++.... +..-+..+
T Consensus 355 -~~~~~-----------------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~-------- 408 (508)
T KOG1840|consen 355 -YLDAP-----------------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV-------- 408 (508)
T ss_pred -HHhhc-----------------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh--------
Confidence 00000 0001123456899999999999999999999987742 11111111
Q ss_pred HhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC--CCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 598 LKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH----NGMY--PSMECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 598 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
...++.|...|.+.+++.+|.++|.+... .|.. -...+|..|...|.+.|+++.|.++.+.+.
T Consensus 409 --------~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 --------GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11378899999999999999999887543 2322 235678899999999999999999988876
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-05 Score=82.17 Aligned_cols=318 Identities=9% Similarity=-0.069 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047492 394 HEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSEL 473 (806)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 473 (806)
..|+..+++..+..-. +..+|+.|- .....|++.-+...|-.-.... +....+|..+--.+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~an-n~~~WnaLG-Vlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCAN-NEGLWNALG-VLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHhhc-cHHHHHHHH-Hhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 4677777776654222 445555544 4466677777777776655543 456667888888888999999999999988
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHhHHHHHHHHHccCCcH---------HHHHHH
Q 047492 474 SRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE----NGHKPTRALHRAVIRCLCNMETPA---------KQFLQL 540 (806)
Q Consensus 474 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~~~~~---------~~~~~~ 540 (806)
....+. |...|-.........|+.-++..+|..--+ .|--|+..-+.....-....|+.. ..+...
T Consensus 877 qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 877665 777787777777778888888888876221 233343322222222222222211 112223
Q ss_pred HHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC-CCccCcchhHHHHHHHHhhhCCCCchhHHH----HHHH
Q 047492 541 LNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS-GLVPQLGSNILMLQSYLKRKNGIPRKLYNT----LIVG 615 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----li~~ 615 (806)
++....+.+.+...|.+.....-+.+.+.+|.++..+.... ..+-+..+ |+. +.+.
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sq-------------------ynvak~~~gRL 1016 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQ-------------------YNVAKPDAGRL 1016 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------------hhhhhhhhhhh
Confidence 45556677777778888877777777777777776664421 01111222 332 2233
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC-CCC-chhHHHHHHHhhccccHH
Q 047492 616 LCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGR-QVT-SFIGNTLLLHALKTRDLY 693 (806)
Q Consensus 616 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~ 693 (806)
++..|.++.|..-+...-. ..+......-+ +..-.|+++++.+.|++.....- ..+ +.....++......+..+
T Consensus 1017 ~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~ 1092 (1238)
T KOG1127|consen 1017 ELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKN 1092 (1238)
T ss_pred hhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccch
Confidence 4445666655443322110 11111111111 11335777888888877754321 112 234444555666677777
Q ss_pred HHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHH
Q 047492 694 EAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIE 738 (806)
Q Consensus 694 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 738 (806)
.|...+-+....-+++..+.-.|...+.--.+-+....+.+++.+
T Consensus 1093 ~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~k 1137 (1238)
T KOG1127|consen 1093 DAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEK 1137 (1238)
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 777777777777777777666665555444444443444444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.9e-06 Score=85.21 Aligned_cols=307 Identities=11% Similarity=0.010 Sum_probs=152.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCC-CCChhh-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHH---
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGM-DLDDYA-YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTI--- 205 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 205 (806)
...|..+...+...|+++.+...+....+... .++... .......+...|++++|.+++++..+..+.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 33444555555556667776666666543311 112211 1111223445677777777777777765545444432
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG 285 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (806)
........+....+.+.++.. ....+........+...+...|++++|.+.+++.... .+.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 111122234445555555441 1111122334445556677788888888888877764 2333456667777777788
Q ss_pred CHHHHHHHHHhhhhcCCCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHHcCChH
Q 047492 286 RLDLALEFLKSKNSLEGYVPEV--FRFNFLVSRLLKENRLMEVFDLFMDMKEGQI-SPDGVTM-N--TVLCFFCKAGMVD 359 (806)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~-~--~ll~~~~~~g~~~ 359 (806)
++++|..++++........++. ..|..+...+...|+.++|..++++...... .+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 8888888877765422212222 2344566777788888888888887654321 1111111 1 2222233334333
Q ss_pred HHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC------CHHHHHHHHH--HHHhcCC
Q 047492 360 VAIEL---YKSRSEFGL-SPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFP------GKKTLSILAD--ALCRDGK 427 (806)
Q Consensus 360 ~a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------~~~~~~~ll~--~~~~~g~ 427 (806)
.+.+. ......... ............++...|+.+.|..+++.+......+ ...+-..++. ++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33222 111111100 0111111234556667777777777777765422110 0011111222 2345566
Q ss_pred hhHHHHHHHHHHH
Q 047492 428 FEQMKDLVIFALE 440 (806)
Q Consensus 428 ~~~a~~~~~~~~~ 440 (806)
.++|.+.+.....
T Consensus 323 ~~~A~~~L~~al~ 335 (355)
T cd05804 323 YATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.9e-05 Score=71.67 Aligned_cols=268 Identities=10% Similarity=-0.008 Sum_probs=141.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 340 PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGI-VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSIL 418 (806)
Q Consensus 340 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 418 (806)
-|......+.+.+...|+.++|+..|+..... .|+.. ......-.+.+.|+.+....+...+....- -+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhh
Confidence 34555566666666666666666666665432 23221 111112223445566655555555543210 011122222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 047492 419 ADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRA 498 (806)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 498 (806)
...+....+++.|..+.++.++.+ +.+...|-.--..+...|+.++|.-.|+......+. +..+|.-|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchH
Confidence 223334455666666666555543 223333333334455666666666666665544322 556677777777777776
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHH-HHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHH
Q 047492 499 DIAARLLVEMEENGHKPTRALHRAVI-RCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYEL 577 (806)
Q Consensus 499 ~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 577 (806)
.+|.-+-+..... +..+..+...+- ..|.......+.+..+.+......+......+.+...+...|+.+++..+++.
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 6666555544331 122222222221 12222222234455555554554455555566667777777788888887777
Q ss_pred HHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 578 MQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 578 m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
.... .||..- .+.|.+.+...+.+.+|+..|.....
T Consensus 464 ~L~~--~~D~~L-------------------H~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLII--FPDVNL-------------------HNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhh--ccccHH-------------------HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6632 455443 67777777777777888877777665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.5e-07 Score=88.47 Aligned_cols=217 Identities=15% Similarity=0.046 Sum_probs=113.6
Q ss_pred ChhhHHHHHHHHhhcC-CCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHH
Q 047492 146 KPDIALHLFGKMRFQG-MDLD--DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEY 222 (806)
Q Consensus 146 ~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 222 (806)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+..+.+...|+.+...+...|++++|.+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455566666655321 1221 234555555666667777777777777766666666777777777777777777777
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCC
Q 047492 223 FQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEG 302 (806)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 302 (806)
|+...+..+ .+..+|..+...+...|++++|.+.|+..... .|+..........+...++.++|.+.|.+... .
T Consensus 121 ~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 121 FDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 777665543 23455566666666677777777777666543 22221111111222344566666666654332 1
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 047492 303 YVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEG---QI--S-PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372 (806)
Q Consensus 303 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~--~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 372 (806)
..++...+ .+.. ...|+...+ +.++.+.+. .+ . .....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12222211 1221 223333332 233333321 00 0 122356666666666777777777776666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-06 Score=86.23 Aligned_cols=162 Identities=9% Similarity=-0.023 Sum_probs=75.1
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
++..|+.+...+...|++++|...|++..+ +.|+... +|..+..++...|++++|.+.|+
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~------------------a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNY------------------AYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence 344555566666666666666666666653 3344332 25555555666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh-------
Q 047492 631 EMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML------- 703 (806)
Q Consensus 631 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 703 (806)
...+ ..|+..........+...+++++|.+.++...... .++...+ .+. ....|+...+ ..+..+.
T Consensus 157 ~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~ 229 (296)
T PRK11189 157 AFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNT 229 (296)
T ss_pred HHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcH
Confidence 6665 23332211111122334555666666665443221 1221111 111 1112222111 1111111
Q ss_pred hccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 704 INEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.-.+.....|..+...|...|+.++|+..|+++.+.
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 111222334555666666666666666666666654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-06 Score=77.12 Aligned_cols=86 Identities=16% Similarity=0.093 Sum_probs=36.1
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAG 255 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (806)
|...|++..|..-+++.++..+.+..++..+...|-+.|+.+.|.+.|++..+..+ .+..+.|.....+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCChHHHH
Confidence 33444444444444444444433444444444444444444444444444443332 22333344444444444444444
Q ss_pred HHHHHhh
Q 047492 256 KLLEDFK 262 (806)
Q Consensus 256 ~~~~~~~ 262 (806)
..|++..
T Consensus 124 q~F~~Al 130 (250)
T COG3063 124 QQFERAL 130 (250)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.7e-06 Score=81.16 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=64.4
Q ss_pred HHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHH
Q 047492 140 GYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 140 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 219 (806)
+....|+++.|+..|.+..... +++.+.|..-..+|+..|++++|.+--.+-.+..+.-+..|+-...++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 3445677777777777766553 225566666667777777777776666666665555555666666666677777777
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHH
Q 047492 220 VEYFQQLVSGRECVSGFMIGIVVDAL 245 (806)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (806)
..-|.+-++... .+...++-+.+++
T Consensus 90 ~~ay~~GL~~d~-~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDP-SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCC-chHHHHHhHHHhh
Confidence 777766665543 3344455555444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00064 Score=80.45 Aligned_cols=341 Identities=10% Similarity=-0.027 Sum_probs=172.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCC-----CCCcc--cHHHHHHH
Q 047492 244 ALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGY-----VPEVF--RFNFLVSR 316 (806)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~--~~~~li~~ 316 (806)
.....|+++.+...++.+... ....+..........+...|+++++...+........- .+... ....+-..
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344567777777776665322 11111122233334445677778877777665431110 01111 11112233
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHH
Q 047492 317 LLKENRLMEVFDLFMDMKEGQISPDG----VTMNTVLCFFCKAGMVDVAIELYKSRSEF----GL-SPNGIVYNYLINSL 387 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~ 387 (806)
+...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... |- .....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 45677777777777766552111111 22344445556677777777777665431 10 01112344445566
Q ss_pred HcCCChhHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 047492 388 CGDGSTHEAYEVLKNSID----HGLF--P-GKKTLSILADALCRDGKFEQMKDLVIFALERN--IKL--RDVTYDKFISA 456 (806)
Q Consensus 388 ~~~g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~ 456 (806)
...|++++|...+++..+ .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 677777777777666543 1211 1 12223334445555677777777766654421 111 12233334455
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc
Q 047492 457 LCKANKVEVGYLIHSELSRMNKVA-SENTY-----IQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNM 530 (806)
Q Consensus 457 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 530 (806)
+...|+.+.|...++......... ....+ ...+..+...|+.+.|...+........ ....
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~------------ 688 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNH------------ 688 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccch------------
Confidence 566677777766665553321100 00000 0111233345666666665544322100 0000
Q ss_pred CCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC----CCccCcchhHHHHHHHHhhhCCCCc
Q 047492 531 ETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS----GLVPQLGSNILMLQSYLKRKNGIPR 606 (806)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~~~~~~~~~~~~~~~ 606 (806)
.....+..+..++...|+.++|...+++.... |..++..
T Consensus 689 -------------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a------------------ 731 (903)
T PRK04841 689 -------------------FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN------------------ 731 (903)
T ss_pred -------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH------------------
Confidence 00111345666778889999999999887653 2221111
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHN 635 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 635 (806)
.+...+..++.+.|+.++|...+.+..+.
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12556777888999999999999998874
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-06 Score=72.68 Aligned_cols=200 Identities=11% Similarity=-0.054 Sum_probs=140.4
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHH
Q 047492 202 TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNL 281 (806)
Q Consensus 202 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (806)
+...|.-.|...|+...|..-+++.++.++ .+..+|..+...|.+.|..+.|.+.|+..... .+-+-.+.|..---+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 445566778888888888888888888765 45567888888888888888888888887653 122334566666667
Q ss_pred HHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHH
Q 047492 282 VRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVA 361 (806)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 361 (806)
|..|++++|...|++........--..+|..+.-+..+.|+.+.|...|++-.+... -...+...+.....+.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 778888888888887776444333456677777777777888888888877776532 2345556666777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 047492 362 IELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDH 406 (806)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 406 (806)
...++.....+. ++..+.-..|+.--+.|+.+.+.+.=.++...
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777766654 66666666677666777777766665555543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-05 Score=73.68 Aligned_cols=202 Identities=16% Similarity=0.134 Sum_probs=140.8
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 304 VPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYL 383 (806)
Q Consensus 304 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 383 (806)
.....-+++.+..+++..++++|++++..-.+... .+....+.+..+|....++..|-..|+++... .|...-|...
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 33344577778888888899999999887766532 26667778888888999999999999988764 4666555433
Q ss_pred -HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047492 384 -INSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADA--LCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA 460 (806)
Q Consensus 384 -i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 460 (806)
...+.+.+.+.+|+.+...|.+. |+...-..-+.+ ....+++..+..+++.....| +..+.+...-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 45677888899999999888754 222222222222 235678888888887754322 333444444445688
Q ss_pred CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047492 461 NKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKP 515 (806)
Q Consensus 461 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 515 (806)
|+.+.|.+-|+...+.+---....|+.-+. ..+.|+++.|++...+++++|++-
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhc
Confidence 999999999998877554435566775554 456789999999999999988754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.0002 Score=67.50 Aligned_cols=331 Identities=11% Similarity=0.051 Sum_probs=195.7
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHH---HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047492 270 LEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLV---SRLLKENRLMEVFDLFMDMKEGQISPDGVTMN 346 (806)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 346 (806)
++.-...+-+.+...|++..|+..|....+ .|...|.++. ..|...|+..-|+.=+....+ .+||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR 109 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH
Confidence 344455566677777777777777776653 3333444433 456666777777766666665 345532211
Q ss_pred H-HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047492 347 T-VLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD 425 (806)
Q Consensus 347 ~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 425 (806)
. --..+.+.|.++.|..=|+.+.+.. |+..+ ...++.+.-..++-+. ....+..+...
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~ 168 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGS 168 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcC
Confidence 1 1233556777777777777766643 32111 0111111111111111 11223334556
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047492 426 GKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLL 505 (806)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 505 (806)
|+...|+.....+++.. +.+...|..-..+|...|++..|+.=++...+.... +..++..+-..+...|+.+.++...
T Consensus 169 GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHH
Confidence 77777777777777764 567777777777888888888777666665554333 5556666666777777877777777
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCcc
Q 047492 506 VEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVP 585 (806)
Q Consensus 506 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 585 (806)
++..+ +.||...+-..-..+-+..+ .++. +......++|.++++-.+...+.. |
T Consensus 247 RECLK--ldpdHK~Cf~~YKklkKv~K-------~les---------------~e~~ie~~~~t~cle~ge~vlk~e--p 300 (504)
T KOG0624|consen 247 RECLK--LDPDHKLCFPFYKKLKKVVK-------SLES---------------AEQAIEEKHWTECLEAGEKVLKNE--P 300 (504)
T ss_pred HHHHc--cCcchhhHHHHHHHHHHHHH-------HHHH---------------HHHHHhhhhHHHHHHHHHHHHhcC--C
Confidence 77765 56665443222222111111 0000 112234577888888888777543 3
Q ss_pred CcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHH
Q 047492 586 QLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS-MECYEELIKLLCSTKNYDMVVGVM 664 (806)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 664 (806)
....+ ....+..+-.++...|++.+|++...+.++ +.|+ ..++.--..+|.-..++++|+.-+
T Consensus 301 ~~~~i--------------r~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 301 EETMI--------------RYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred cccce--------------eeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 31110 001255566777788999999999999887 6665 777777788888888999999999
Q ss_pred HHHHhCCC
Q 047492 665 NHLEGHGR 672 (806)
Q Consensus 665 ~~~~~~~~ 672 (806)
+...+.+.
T Consensus 365 e~A~e~n~ 372 (504)
T KOG0624|consen 365 EKALELNE 372 (504)
T ss_pred HHHHhcCc
Confidence 98887653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-08 Score=61.99 Aligned_cols=33 Identities=39% Similarity=0.544 Sum_probs=28.3
Q ss_pred cCCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 773 KGYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 773 ~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
+|+.||..||++++.+||+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478888888888888888888888888888887
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.3e-05 Score=78.05 Aligned_cols=205 Identities=9% Similarity=-0.038 Sum_probs=93.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCC-CC--HHHHHHHHHHHHh
Q 047492 418 LADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKV-AS--ENTYIQLIHGFNK 494 (806)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~ 494 (806)
+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++........ ++ ...|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555555555555555543 333444455555555555555555555554443221 11 1223345555555
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHhH-H--HHHHHHHccCC--cHHHHHHHHHhHhhCC--CCChhhHHHHHHhhhcCC
Q 047492 495 SNRADIAARLLVEMEENGH-KPTRALH-R--AVIRCLCNMET--PAKQFLQLLNMQLSHQ--ETNFQIYNFFIDGAGHVK 566 (806)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~ll~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 566 (806)
.|++++|..++++...... .+..... + .++..+...+. .......+........ ............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 6666666666665543211 1111111 1 11111111221 0111111111111111 111122224566778889
Q ss_pred ChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 567 RPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 567 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+.+.|..+++.+......++..... .......-....++...|++++|.+.+.....
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~-----------~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQP-----------ARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhh-----------HHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999987633221000000 00001122333445678888888888877665
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-06 Score=85.71 Aligned_cols=248 Identities=13% Similarity=0.075 Sum_probs=139.3
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHH
Q 047492 245 LCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLM 324 (806)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 324 (806)
+.-.|.+..++.-.+ .... ....+.....-+.+++...|+.+.++.- +.. +-.|.......+...+...++-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~-~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~--~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSF-SPENKLERDFYQYRSYIALGQYDSVLSE---IKK--SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTS-TCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-T--TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccCC-CchhHHHHHHHHHHHHHHcCChhHHHHH---hcc--CCChhHHHHHHHHHHHhCccchH
Confidence 445566666665444 2222 2222334455566677777776654432 221 12455555544444443334445
Q ss_pred HHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 047492 325 EVFDLFMDMKEGQISP-DGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNS 403 (806)
Q Consensus 325 ~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 403 (806)
.++.-+++.......+ +.........++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554444333222 2222222224455667788777776532 35566666777888888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCC
Q 047492 404 IDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKV 479 (806)
Q Consensus 404 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 479 (806)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....++.
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 7642 33444445554432 23577888888886554 4677777788888888888888888888877666554
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 047492 480 ASENTYIQLIHGFNKSNRA-DIAARLLVEMEE 510 (806)
Q Consensus 480 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 510 (806)
++.+...++-.....|+. +.+.+++.+++.
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666666666766 556677777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00018 Score=72.36 Aligned_cols=377 Identities=14% Similarity=0.094 Sum_probs=203.6
Q ss_pred HHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCc
Q 047492 104 KLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD-DYAYHVLLNALVEQGCF 182 (806)
Q Consensus 104 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 182 (806)
.+....|+++.+...+-....-. +++...|+--..+|++.|++++|+.=-.+-.+. .|+ +..|+..-.++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45677899999999988877754 558999999999999999999998877777665 565 34888888899999999
Q ss_pred chHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHH------HHhHhCC---CCCCHHhHHHHHHHHHhc-----
Q 047492 183 DAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYF------QQLVSGR---ECVSGFMIGIVVDALCKN----- 248 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~------~~~~~~~---~~~~~~~~~~li~~~~~~----- 248 (806)
++|+.-|.+-++..+.+...++.+..++.... .+.+.| ....... .......|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999999998888889998888872111 111111 1111000 000111222222222111
Q ss_pred -----CCHHHHHHHHHHhhhC----CCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCC--C----------c
Q 047492 249 -----SRFEQAGKLLEDFKDR----DDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVP--E----------V 307 (806)
Q Consensus 249 -----g~~~~A~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~----------~ 307 (806)
.++..|...+...... .+..+.. ....+. ..+. .+.++ | .
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~-----------~~~~p~------~~~~--~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILA-----------SMAEPC------KQEH--NGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCC-----------CCCCcc------cccC--CCCCccchhHHHHHHHHhh
Confidence 0111111111100000 0000000 000000 0000 00000 0 0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH-----
Q 047492 308 FRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNY----- 382 (806)
Q Consensus 308 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----- 382 (806)
.-...+.++..+..+++.+++-+....... -+..-++..-.+|...|.+......-....+.|.. ...-|+.
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~ 301 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL 301 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH
Confidence 113344555666667777777777666543 34455555666667666666655555554443311 1112222
Q ss_pred --HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH-------------------------HHHHHHhcCChhHHHHHH
Q 047492 383 --LINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSI-------------------------LADALCRDGKFEQMKDLV 435 (806)
Q Consensus 383 --li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-------------------------ll~~~~~~g~~~~a~~~~ 435 (806)
+-.+|.+.++++.++..|.+.......|+...-.. -...+.+.|++..|..-+
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 22345556667777777777655444443322111 122344556666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 436 IFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 436 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.+++... +-|...|..-.-+|.+.|.+..|.+=.+...+.++. ....|..-..++....++++|++.|.+..+
T Consensus 382 teAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 382 TEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666655 455556666666666666666666655555554332 333344444444445556666666666555
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-06 Score=82.99 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 310 FNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLIN 385 (806)
Q Consensus 310 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 385 (806)
....+..+.+.++.+.|.+.++.|.+.. .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~ 209 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHH
Confidence 3334444455555555555555554421 12 222222222221 12344455555544332 2344444444444
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 047492 386 SLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKF-EQMKDLVIFAL 439 (806)
Q Consensus 386 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 439 (806)
+....|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+.+.++.
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 444445555554444444433222 333333334433444433 33334444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.6e-06 Score=81.92 Aligned_cols=258 Identities=11% Similarity=0.045 Sum_probs=148.6
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHH
Q 047492 457 LCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQ 536 (806)
Q Consensus 457 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 536 (806)
+.+.|++.+|.-.|+..++.++. +...|..|......+++-..|+..+++..+ +.|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~-------------------- 351 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPT-------------------- 351 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCc--------------------
Confidence 34556666666666666666555 666666666666666666666666666655 3443
Q ss_pred HHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH
Q 047492 537 FLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL 616 (806)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 616 (806)
|..+.-.|.-.|...|.-.+|++.+++..... |. |..+..+-
T Consensus 352 --------------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~----------------------y~~l~~a~ 393 (579)
T KOG1125|consen 352 --------------NLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PK----------------------YVHLVSAG 393 (579)
T ss_pred --------------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cc----------------------chhccccC
Confidence 33334444555556666666777776665432 21 11110000
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHH
Q 047492 617 CKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAW 696 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 696 (806)
..+++..- +-.++...+..+-. .+++.....+..+|+-+...|.-.|.-.|+++.|.
T Consensus 394 -~~~~~~~~----------~s~~~~~~l~~i~~------------~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 394 -ENEDFENT----------KSFLDSSHLAHIQE------------LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred -ccccccCC----------cCCCCHHHHHHHHH------------HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 00000000 01122222222211 12222233333455555555555566666666666
Q ss_pred HHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-hhhHHHHHHHHhh-hcHHHHHHHHHHHH---
Q 047492 697 IRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNILLRRLSV-SEIDHACELFNRMR--- 771 (806)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~-g~~~~A~~~~~~m~--- 771 (806)
..|+.++...|.|..+||-|..+++...+.++|+..+.++++. .|+ +.++-.|.-.|.. |.+++|.+.|-...
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 6666666667788888999999999999999999999999985 444 4444445556767 99999988776644
Q ss_pred HcCC------CCChhhHHHHHhhhhccCCHHHHHH
Q 047492 772 RKGY------EPDQWTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 772 ~~g~------~p~~~~~~~l~~~~~~~g~~~eA~~ 800 (806)
+++. .++..+|.+|-.++.-.++.|-+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 3322 2334578887777777777764443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00094 Score=67.29 Aligned_cols=150 Identities=9% Similarity=0.092 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CchhHHHHHHHhhccccHHHHHHHH
Q 047492 622 ANLAWGFMREMRHN-GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV-TSFIGNTLLLHALKTRDLYEAWIRL 699 (806)
Q Consensus 622 ~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 699 (806)
.+....+++++... ..+|+. +|..+++..-+..-++.|..+|.++.+.+..+ ++++.++++..++ ++|...|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 45556667776653 345554 46778888888889999999999999998877 7888888887655 57889999999
Q ss_pred HhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC--hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 700 RGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD--TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
+--....+.++.-....++.+..-++-..|..+|++....++++| ...|+.+|.-=.. |+..-++++-+++...
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999988888888889999999999999999999999999876665 5789999988888 9999999998887754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00022 Score=67.22 Aligned_cols=327 Identities=10% Similarity=0.017 Sum_probs=180.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHH---HHHHhcCCcchHHHHHHHHHhcCCCCccchHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLL---NALVEQGCFDAVAVVSKQISMRGFENDVTRTIM 206 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (806)
++.-.--+-..+..+|.+.+|+.-|....+. |+..|.++. ..|...|....|+.-+..+.+..+.-..+...-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 3444444555666677777777777777654 444444443 346666766666666666665533211222223
Q ss_pred HHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCC
Q 047492 207 LKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGR 286 (806)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (806)
...+.+.|.+++|..=|+.+++....... ...++.+.-..++-. .....+..+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~-----------------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHW-----------------VLVQQLKSASGSGD 170 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHH-----------------HHHHHHHHHhcCCc
Confidence 34456677777777777777665542111 011111110111111 12233444555667
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 047492 287 LDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYK 366 (806)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 366 (806)
...|+.....+.+ -.+.|...|..-..+|...|+...|+.=++..-+.. ..++.++--+-..+...|+.+.++..++
T Consensus 171 ~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 171 CQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777776666653 234566666666677777777777766555544432 1244455555566666777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047492 367 SRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLR 446 (806)
Q Consensus 367 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 446 (806)
+..+. .||...+-.. | .++.+..+.++.|.+ ....+++.++.+-.+...+......
T Consensus 248 ECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 248 ECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCccc
Confidence 76653 3554322111 1 112222222222221 2234555555555555555442222
Q ss_pred HH---HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 447 DV---TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 447 ~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.. .+..+-.++...|++-+|++...++.+..+. |..++.--..+|.-...++.|+.-|+...+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22 3344556666778888888888887766544 677777778888888888888888888776
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0011 Score=66.83 Aligned_cols=212 Identities=11% Similarity=0.105 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047492 428 FEQMKDLVIFALERNIKLRDVTYDKFISALCKAN---KVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
.+++..+++...+.-..-+..+|..+...=-..- +.+.....+++.......--.-+|..+++.-.+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455666665554433334444444433221111 2455556666655433222334688888888888889999999
Q ss_pred HHHHHHCCCCC-CHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC
Q 047492 505 LVEMEENGHKP-TRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL 583 (806)
Q Consensus 505 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 583 (806)
|.+..+.+..+ +...+++++..+|.... ..+...++......+.++.--...++-+.+.++-..+..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~--~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDK--ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCCh--hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999988777 67777888888887665 5666777777777777777778888888888888899999999887766
Q ss_pred ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChh
Q 047492 584 VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN---GMYPSMECYEELIKLLCSTKNYD 658 (806)
Q Consensus 584 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~ 658 (806)
.|+... ..|..++.-=..-|+...+.++-+++... ...+...+-..+++-|.-.+.+.
T Consensus 467 ~~~ks~-----------------~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 467 SADKSK-----------------EIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred ChhhhH-----------------HHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 655432 34888888888888888888887776542 12222233344555555555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00021 Score=84.55 Aligned_cols=337 Identities=10% Similarity=-0.012 Sum_probs=181.4
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC----Cc-----cchHHHHHHhh
Q 047492 141 YALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFE----ND-----VTRTIMLKCLC 211 (806)
Q Consensus 141 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~-----~~~~~li~~~~ 211 (806)
....|.+..+..+++.+.......++.........+...|+++++..++......-.. .. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445666666666665532211112222233334445667777777777665433110 01 11222334455
Q ss_pred ccCCHHHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCcchhhHHHHHHHHHH
Q 047492 212 KQKKIDEAVEYFQQLVSGRECVS----GFMIGIVVDALCKNSRFEQAGKLLEDFKDRD----DVVKLEKAYDVWLRNLVR 283 (806)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~li~~~~~ 283 (806)
..|++++|...++...+.....+ ....+.+...+...|++++|...+++..... .......++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67777777777777654311111 1234555566667777777777776654210 111122344555666777
Q ss_pred cCCHHHHHHHHHhhhhc---CCCC--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--ChhhHHHHHHHHH
Q 047492 284 AGRLDLALEFLKSKNSL---EGYV--P-EVFRFNFLVSRLLKENRLMEVFDLFMDMKEG--QISP--DGVTMNTVLCFFC 353 (806)
Q Consensus 284 ~g~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~--~~~~~~~ll~~~~ 353 (806)
.|++++|...+++.... .+.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 77777777776654331 2211 1 2233444455566678888887777765442 1112 2333444555667
Q ss_pred HcCChHHHHHHHHHHHhC----CCCCCHHHH--HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 047492 354 KAGMVDVAIELYKSRSEF----GLSPNGIVY--NYLINSLCGDGSTHEAYEVLKNSIDHGLFPG---KKTLSILADALCR 424 (806)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~----~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~ 424 (806)
..|+.+.|.+.+...... +........ ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 778888888777776431 111111011 1122444557788888887766543221111 1113455666777
Q ss_pred cCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 047492 425 DGKFEQMKDLVIFALER----NIKL-RDVTYDKFISALCKANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 425 ~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 477 (806)
.|+.++|...+...... |... ...+...+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888776553 3222 12355566677788888888888888877654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.1e-08 Score=58.29 Aligned_cols=32 Identities=34% Similarity=0.735 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 047492 372 GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNS 403 (806)
Q Consensus 372 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 403 (806)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-06 Score=87.36 Aligned_cols=216 Identities=13% Similarity=0.080 Sum_probs=126.2
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
-...-..+...+.+.|-..+|..+|++.. .|.-.|.+|...|+.++|..+..
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erle----------------------------mw~~vi~CY~~lg~~~kaeei~~ 448 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLE----------------------------MWDPVILCYLLLGQHGKAEEINR 448 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHH----------------------------HHHHHHHHHHHhcccchHHHHHH
Confidence 33334455556666777777777777664 15666667777776666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcch
Q 047492 631 EMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKI 710 (806)
Q Consensus 631 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 710 (806)
.-.+ -+|+...|..+.+......-++.|.++.+..... .-..+....+..+++.++.+.++...+-.|-..
T Consensus 449 q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 449 QELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred HHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccch
Confidence 6555 3566666666666555555566666665554322 111111122335666666666666666666666
Q ss_pred hhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 047492 711 SLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGL 789 (806)
Q Consensus 711 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 789 (806)
.+|..+..++.+.+++..|.+.|...... -+.+...||.+-.+|.+ |+-.+|...+++...-+. -+-..|...+...
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvs 597 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVS 597 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhh
Confidence 66666666666666666666666666653 23334566666666666 666666666666665552 2334455555556
Q ss_pred hccCCHHHHHHHHHhh
Q 047492 790 YNCLRTDEAERRLEEM 805 (806)
Q Consensus 790 ~~~g~~~eA~~~l~~m 805 (806)
.+-|.+++|++...+|
T Consensus 598 vdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 598 VDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhcccHHHHHHHHHHH
Confidence 6666666666665554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0031 Score=67.76 Aligned_cols=163 Identities=14% Similarity=0.034 Sum_probs=88.4
Q ss_pred HHHHHHHHHccCCcHHHHHH--HHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHH
Q 047492 520 HRAVIRCLCNMETPAKQFLQ--LLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSY 597 (806)
Q Consensus 520 ~~~ll~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 597 (806)
.+.++..+.+.++...-... +++......+.|..+--.+|+.|.-.|-...|.++|+.+--..+.-|...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlg-------- 510 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLG-------- 510 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccch--------
Confidence 34555666666664433322 25556666677777777888888888888888888887765566555433
Q ss_pred HhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH---HHHHhCCCCC
Q 047492 598 LKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVM---NHLEGHGRQV 674 (806)
Q Consensus 598 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~~ 674 (806)
| .+..-+...|++..+...++....-=-..-..+-. +|....+.|.+....++. +++.......
T Consensus 511 -----------h-~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~ 577 (932)
T KOG2053|consen 511 -----------H-LIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKW 577 (932)
T ss_pred -----------H-HHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHH
Confidence 2 23344555667766666665544310000011111 222334556665554443 2222222222
Q ss_pred CchhHHHHHHHhhccccHHHHHHHHHhhh
Q 047492 675 TSFIGNTLLLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 675 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 703 (806)
...+-+..+...+..++...-...+..+.
T Consensus 578 a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 578 ACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 33445555555666666666666666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0033 Score=67.57 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=78.0
Q ss_pred HhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHH--HhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHH
Q 047492 142 ALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNAL--VEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 142 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 219 (806)
...+++.+|+...+++.+. .|+. .|..++.++ .+.|..++|..+++.....+..|..|...+-.+|...|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 4567888888888888765 4443 344555554 4688888888888777776667777888888888888888888
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 047492 220 VEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
..+++...... |+......+..+|.+-+.+.+
T Consensus 97 ~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 97 VHLYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 88888887655 446666667777777766644
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-05 Score=77.76 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=156.8
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047492 353 CKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMK 432 (806)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (806)
.+.|++.+|.-.|+...+.. +-+...|..|-..-...++-..|+..+++..+.... |....-.|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 45566666666666655432 234456666666666666666666666666655432 4455555556666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHH-----HH--HHHHhcCChhHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047492 433 DLVIFALERNIKLRDVTYDK-----FI--SALCKANKVEVGYLIHSELSRM-NKVASENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~-----ll--~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
..++..+....+ -...-.. .. ..+.....+....++|-++... +..+|+..+..|.-.|-..|++++|.+.
T Consensus 374 ~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 666655443210 0000000 00 0111111223344455554443 3346888888999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc
Q 047492 505 LVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV 584 (806)
Q Consensus 505 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 584 (806)
|+.... ++|+ |..+||-|...++...+.++|...|.+.. .++
T Consensus 453 f~~AL~--v~Pn----------------------------------d~~lWNRLGAtLAN~~~s~EAIsAY~rAL--qLq 494 (579)
T KOG1125|consen 453 FEAALQ--VKPN----------------------------------DYLLWNRLGATLANGNRSEEAISAYNRAL--QLQ 494 (579)
T ss_pred HHHHHh--cCCc----------------------------------hHHHHHHhhHHhcCCcccHHHHHHHHHHH--hcC
Confidence 998876 4554 56679999999999999999999999999 568
Q ss_pred cCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh---CC------CCCCHHHHHHHHHHHHcCC
Q 047492 585 PQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH---NG------MYPSMECYEELIKLLCSTK 655 (806)
Q Consensus 585 p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g------~~p~~~~~~~l~~~~~~~g 655 (806)
|+.+. +...|.-.|...|.+++|.+.|-..+. .+ ..++...|.+|=.++.-.+
T Consensus 495 P~yVR------------------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 495 PGYVR------------------VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred CCeee------------------eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence 88765 355677889999999999998877554 21 1223345666555555566
Q ss_pred ChhHHHH
Q 047492 656 NYDMVVG 662 (806)
Q Consensus 656 ~~~~A~~ 662 (806)
+.|.+.+
T Consensus 557 ~~D~l~~ 563 (579)
T KOG1125|consen 557 RSDLLQE 563 (579)
T ss_pred CchHHHH
Confidence 5554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-05 Score=79.91 Aligned_cols=212 Identities=12% Similarity=0.063 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK 214 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 214 (806)
..+...+.+.|-...|+.+|++.. .|.-++.+|+..|+..+|..+..+-.+ ..|++..|..+.+......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 344555555666666666666543 344455556666666666665555554 3445555555555554444
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHH
Q 047492 215 KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFL 294 (806)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (806)
-+++|.++.+....+ .-..+.......++++++.+.|+.-...+ +-...+|-..-.+..+.++++.|.+.|
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 455555555443322 11111111222455555555555433321 112234444444444555555555555
Q ss_pred HhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047492 295 KSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRS 369 (806)
Q Consensus 295 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 369 (806)
..... ..|| ...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.
T Consensus 543 ~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 543 HRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 54432 2232 3445555555555555555555555555444 2233333333444444455555555544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-05 Score=75.72 Aligned_cols=178 Identities=8% Similarity=-0.049 Sum_probs=114.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch--hHHH
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF--IGNT 681 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ 681 (806)
.+..+...+...|++++|...|+++... .|+ ...+..+..++...|++++|...++.+.+........ .+..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 4677888899999999999999999874 343 2456777888999999999999999998775433221 3344
Q ss_pred HHHHhhcc--------ccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHH
Q 047492 682 LLLHALKT--------RDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLR 753 (806)
Q Consensus 682 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 753 (806)
+...+... |+...|.+.++.+....|.+...+..+...... ..... .....+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~-----------~~~~~-------~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL-----------RNRLA-------GKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH-----------HHHHH-------HHHHHHHH
Confidence 44444433 677778887777776666655444333211000 00000 00113344
Q ss_pred HHhh-hcHHHHHHHHHHHHHcCC-CC-ChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 754 RLSV-SEIDHACELFNRMRRKGY-EP-DQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 754 ~~~~-g~~~~A~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
.|.. |++++|+..+++..+... .| ....+..+..++.+.|++++|..+++.+
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666 788888877777775522 12 3456667777777888888887777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.4e-05 Score=83.64 Aligned_cols=230 Identities=7% Similarity=-0.012 Sum_probs=177.5
Q ss_pred hhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC-CCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChH
Q 047492 545 LSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS-GLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKAN 623 (806)
Q Consensus 545 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 623 (806)
....+.....|-..|......++.++|++++++.... ++.-...-.+ .|.+++..-...|.-+
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLN----------------iWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLN----------------IWIAYLNLENAYGTEE 1514 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHH----------------HHHHHHhHHHhhCcHH
Confidence 3444555667888888888999999999999987742 2111111100 2666777666777778
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh
Q 047492 624 LAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 703 (806)
...++|++..+. .-....|..|...|.+.+.+++|.++++.|.+.-- ....+|...+..+++..+-++|..++.++.
T Consensus 1515 sl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1515 SLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888999998873 23345688899999999999999999999987643 666788888899999999999999999999
Q ss_pred hccCc--chhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChh
Q 047492 704 INEQS--KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 704 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
...|. ......-.+..-.++|+.+++..+|+..... .|.-...|+..|+.-.+ |+.+.+..+|++....++.|-..
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 87777 5556677778888999999999999999886 46677889999999999 99999999999999999887653
Q ss_pred --hHHHHHhhhhccCC
Q 047492 781 --TFDILKCGLYNCLR 794 (806)
Q Consensus 781 --~~~~l~~~~~~~g~ 794 (806)
.|..++.-=...|+
T Consensus 1671 KfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1671 KFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 44445443344455
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.32 E-value=4e-05 Score=73.96 Aligned_cols=146 Identities=13% Similarity=-0.027 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHHHHHhhccccHHHHHHHHHhhhhccCcchh---hHH
Q 047492 640 SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKIS---LLG 714 (806)
Q Consensus 640 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 714 (806)
....+......+...|++++|...++++........ ...+..+...+...|+.++|...++++....|.+.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455667777888899999999999999877653221 134566677888889999999999998877665554 455
Q ss_pred HHHHhhhcc--------ccchhhHHHHHHHHHcCCCCCh-hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHH
Q 047492 715 QLIGVFSGC--------IKVSQDIEGLQKMIEQCFPLDT-YTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDI 784 (806)
Q Consensus 715 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (806)
.+..++... |+.++|++.++++.+. .|+. ..+..+...... +.... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~------------------~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAG------------------KELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHH------------------HHHH
Confidence 555555543 7778888888888875 3333 333322211111 11110 1124
Q ss_pred HHhhhhccCCHHHHHHHHHhh
Q 047492 785 LKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 785 l~~~~~~~g~~~eA~~~l~~m 805 (806)
+...+.+.|++++|...+++.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHH
Confidence 556678889999888887753
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00024 Score=70.50 Aligned_cols=213 Identities=9% Similarity=-0.033 Sum_probs=121.2
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 047492 555 YNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM-KANLAWGFMREMR 633 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~ 633 (806)
+..+-..+...++.++|+.+..++.+ +.|+..+ +|+.-...+...| ++++++..++++.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~yt------------------aW~~R~~iL~~L~~~l~eeL~~~~~~i 99 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIR--LNPGNYT------------------VWHFRRLCLEALDADLEEELDFAEDVA 99 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHH------------------HHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence 33344445556667777777777663 3455544 3544444455555 4567777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCh--hHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchh
Q 047492 634 HNGMYPSMECYEELIKLLCSTKNY--DMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKIS 711 (806)
Q Consensus 634 ~~g~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 711 (806)
+... .+..+|..-...+.+.|.. +++..+++.+.+.+. -+...++...+.+...|+.++++..+.++....+.+..
T Consensus 100 ~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 100 EDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 6321 1333454444444455542 556666666665542 23345555555566666777777777777777777777
Q ss_pred hHHHHHHhhhcc---ccc----hhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-h----cHHHHHHHHHHHHHcCCCCCh
Q 047492 712 LLGQLIGVFSGC---IKV----SQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-S----EIDHACELFNRMRRKGYEPDQ 779 (806)
Q Consensus 712 ~~~~l~~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g----~~~~A~~~~~~m~~~g~~p~~ 779 (806)
.|+....++.+. |+. +++++...+++.. .+-|...|+-+...+.. + +..+|...+.+..+.++ .+.
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~ 255 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHV 255 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcH
Confidence 776665555433 222 3456666566665 35566677766666655 3 23556666666555332 245
Q ss_pred hhHHHHHhhhhc
Q 047492 780 WTFDILKCGLYN 791 (806)
Q Consensus 780 ~~~~~l~~~~~~ 791 (806)
.....|+..|+.
T Consensus 256 ~al~~l~d~~~~ 267 (320)
T PLN02789 256 FALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHh
Confidence 556667777765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.7e-05 Score=68.14 Aligned_cols=155 Identities=14% Similarity=-0.013 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccc
Q 047492 645 EELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCI 724 (806)
Q Consensus 645 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 724 (806)
..+-..+...|+-+....+....... ...|......++......|++..|...++++....|+|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44445555666666666665554322 23344455556666777777777777777777777777777777777777777
Q ss_pred cchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHH
Q 047492 725 KVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 725 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l 802 (806)
+.++|...+.+..+. .+-+...+|.|...+.- |+.+.|..++......+.. |..+-..+..+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777777775 34455566666666655 7777777777777665433 4444455666777777777777654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00078 Score=75.49 Aligned_cols=204 Identities=12% Similarity=0.019 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047492 272 KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE---VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV 348 (806)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 348 (806)
..|...|....+.++.++|.++.++....-++.-. ...|.++++.-..-|.-+...++|++..+.- -.-..|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 45555555555666666666666655532111111 2344455554445555555555665555421 112345555
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCC
Q 047492 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLF-PGKKTLSILADALCRDGK 427 (806)
Q Consensus 349 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~ 427 (806)
...|.+.+.+++|-++|+.|.+. +......|...+..+.+..+-+.|..++.+..+.=.+ -........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 55566666666666666665542 1234445555555555555555566655555543111 011223333333345555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCC
Q 047492 428 FEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKV 479 (806)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 479 (806)
.+.+..+|+..+... +--...|+..++.=.++|+.+.+..+|+.+...+..
T Consensus 1616 aeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred chhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 555555555554443 233345555555555555555555555555555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00054 Score=76.01 Aligned_cols=168 Identities=11% Similarity=0.025 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHH
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLN 174 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 174 (806)
....+..++..+-..++++.+.++.+..... .+.....|-.+...+.+.++..++..+ .+. +
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL--NLI---------------D 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------h
Confidence 4556666666666777777777777755543 233344444444456666665555444 222 1
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 047492 175 ALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQA 254 (806)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (806)
......++..+..++..+.. ...+..++..+..+|-+.|+.++|..+++++++.++ -|..+.|.+...|+.. ++++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHH
Confidence 22222233222222223322 223444666777777777777777777777777663 5666777777777777 77777
Q ss_pred HHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 255 GKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
++++.+.... +...+++..+.++|.++..
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHh
Confidence 7776655432 4445556666666666553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00078 Score=74.81 Aligned_cols=238 Identities=8% Similarity=-0.009 Sum_probs=145.6
Q ss_pred CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHH
Q 047492 199 NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWL 278 (806)
Q Consensus 199 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 278 (806)
+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+...++.+++..+ .+.. ..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---~~~--------- 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID---SFS--------- 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh---hcc---------
Confidence 4457888888888889999999988876665432 222333333367777776666655 2221 122
Q ss_pred HHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh
Q 047492 279 RNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMV 358 (806)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 358 (806)
...++.-+..+...+.. ..-+...+-.+..+|-+.|+.+++..+++++.+.. +-|+...|.+...|... ++
T Consensus 95 ----~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 ----QNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred ----cccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 12222222222222221 12233466777888889999999999999998876 34788888888888888 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047492 359 DVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFA 438 (806)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (806)
++|++++.+.... +...+++.++.++|.++...... +...+..+++ .+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~----------------ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIER----------------KV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHH----------------HH
Confidence 9999988877652 55566777888888877765322 2222222222 22
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 047492 439 LER-NIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFN 493 (806)
Q Consensus 439 ~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 493 (806)
... |..--..++-.+...|-+.++++++..+++.+.+.... |.....-++..|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 211 22223334455556666667777777777777666555 5555555665555
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0024 Score=63.46 Aligned_cols=202 Identities=8% Similarity=-0.045 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047492 346 NTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG-STHEAYEVLKNSIDHGLFPGKKTLSILADALCR 424 (806)
Q Consensus 346 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 424 (806)
..+-..+...+..++|+.+..++++.. +-+..+|+.--..+...| ++++++..++++.+...+ +..+|+.--..+.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 334444445556666666666666532 122234444434444444 456666666666655433 33444433333334
Q ss_pred cCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 425 DGKF--EQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 425 ~g~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
.|+. +++..+++.+.+.+ +-+..+|+....++...|+++++++.++.+.+.++. |...|+.....+.+.++..
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~--- 193 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG--- 193 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc---
Confidence 4432 44555555555544 344555555555555555566666666665555544 4445544443333221100
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcC----CChHHHHHHHHHH
Q 047492 503 RLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHV----KRPDLARAVYELM 578 (806)
Q Consensus 503 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m 578 (806)
+.....++...+........+.|...|+.+...+... ++..+|.+.+.+.
T Consensus 194 --------------------------~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 194 --------------------------GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred --------------------------cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 0000012233333344455566777777777777663 3445677777776
Q ss_pred HH
Q 047492 579 QR 580 (806)
Q Consensus 579 ~~ 580 (806)
..
T Consensus 248 ~~ 249 (320)
T PLN02789 248 LS 249 (320)
T ss_pred hc
Confidence 54
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0006 Score=62.81 Aligned_cols=119 Identities=9% Similarity=0.053 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhHH
Q 047492 390 DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISAL-CKANK--VEVG 466 (806)
Q Consensus 390 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a 466 (806)
.++.+++...+++..+.... |...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555544322 55566666666666666666666666666654 33555555555543 45555 3666
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047492 467 YLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN 511 (806)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 511 (806)
.+++++..+.++. +...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666666555 5666666666666777777777777776653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0011 Score=60.68 Aligned_cols=249 Identities=13% Similarity=0.065 Sum_probs=142.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCC
Q 047492 243 DALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENR 322 (806)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 322 (806)
+-+.-.|.+..++..-...... +-+...-.-+-++|...|....... +++ .+-.|.......+-.....-++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~--~~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIK--EGKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---ccc--cccCChHHHHHHHHHHhhCcch
Confidence 3344556777666655554432 1233333444555666665443322 221 1112333333333333333444
Q ss_pred HHHH-HHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 047492 323 LMEV-FDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLK 401 (806)
Q Consensus 323 ~~~a-~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 401 (806)
.+.- -++.+.+.......+......-...|++.|++++|++..+.. -+....-.=+..+.+..+++-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 334444444433334343444455678888888888887752 122333333455667778888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 047492 402 NSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 402 ~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 477 (806)
+|.+- -+..|.+.|..++.+ .+....|.-+|++|-++ ..|+..+.+....++...|++++|..++++...+.
T Consensus 162 ~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 88764 255677767766653 24577788888887654 47788888888888888888888888888887776
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 047492 478 KVASENTYIQLIHGFNKSNRA-DIAARLLVEMEE 510 (806)
Q Consensus 478 ~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 510 (806)
.. ++.+...++-.-...|.. +-..+.+.+++.
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 65 555555454444444443 334455555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00024 Score=77.98 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=80.1
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHH
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDY-AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIM 206 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (806)
+.++..+..|.....+.|.+++|..+++...+. .|+.. ....+..++.+.+++++|...+++.....+.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 444556666666666666666666666666655 44333 445555566666666666666666666666666666666
Q ss_pred HHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047492 207 LKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (806)
..++.+.|++++|..+|++....+. .+..++..+...+-+.|+.++|...|+...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666665322 3345555566666666666666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00023 Score=78.18 Aligned_cols=164 Identities=8% Similarity=-0.052 Sum_probs=133.7
Q ss_pred CCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCh-hh
Q 047492 90 PHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDD-YA 168 (806)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~ 168 (806)
..+.++...+..+.++..+.|.++++..+++..... .|.+......+...+.+.+++++|+..+++.... .|+. ..
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~ 156 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSARE 156 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHH
Confidence 356778999999999999999999999999999884 5667888888999999999999999999999987 5654 46
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 047492 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248 (806)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (806)
.+.+..++.+.|++++|.++|+++...++.+..++..+..++-..|+.++|...|+...+..- +....|+..+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~------ 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHH------
Confidence 666677788999999999999999997777788999999999999999999999999987543 3334554433
Q ss_pred CCHHHHHHHHHHhhh
Q 047492 249 SRFEQAGKLLEDFKD 263 (806)
Q Consensus 249 g~~~~A~~~~~~~~~ 263 (806)
++...-..+++++.-
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (694)
T PRK15179 230 VDLNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHHHcCc
Confidence 233344455555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00053 Score=62.81 Aligned_cols=155 Identities=14% Similarity=0.046 Sum_probs=73.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCC
Q 047492 136 TLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKK 215 (806)
Q Consensus 136 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 215 (806)
.+-..+.-.|+-+.+..+........ .-|....+.......+.|++..|+..+++.....+++..+|+.+.-+|.+.|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 33344444455555444444432221 11333344445555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHH
Q 047492 216 IDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFL 294 (806)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (806)
+++|..-|.+..+... .+....|.|.-.+.-.|+++.|..++...... -.-|...-..+.......|++++|.++.
T Consensus 150 ~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555544332 22234444444444555555555555544432 1123333444444444455555554443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=65.70 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=62.0
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcc-hhhHHHHHHHHHHcCCHHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKL-EKAYDVWLRNLVRAGRLDL 289 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 289 (806)
...|++++|+..++.++...+ .|...+....+.+.+.++.++|.+.++.+... .|+ ...+..+..+|.+.|++.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHH
Confidence 344555566666555554322 34444455555555666666666666555543 232 3344445555556666666
Q ss_pred HHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 290 ALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDM 333 (806)
Q Consensus 290 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (806)
|+.+++.... ..+-|...|..|..+|...|+..++..-..+.
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6665555542 23344555666666666666655555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0037 Score=62.69 Aligned_cols=114 Identities=16% Similarity=0.058 Sum_probs=53.5
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCChhh-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHH
Q 047492 141 YALAGKPDIALHLFGKMRFQGMDLDDYA-YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 141 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 219 (806)
+...|++++|+..++.+... .|+... +....+.+.+.++..+|.+.++.+....+........+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 33445555555555555443 333322 222333444455555555555555544443344444444555555555555
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 047492 220 VEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKL 257 (806)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (806)
..+++....... .|...|..|..+|...|+..++..-
T Consensus 394 i~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 394 IRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHH
Confidence 555554444332 3444555555555555554444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.6e-05 Score=68.36 Aligned_cols=119 Identities=11% Similarity=0.001 Sum_probs=70.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHH-hhcccc--HHHH
Q 047492 619 AMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH-ALKTRD--LYEA 695 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a 695 (806)
.++.+++...++...+.. +.+...|..+...|...|++++|...+++..+.... +...+..+... +...|+ ..+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445566666666655532 335666777777777777777777777777665432 33333333333 234444 3566
Q ss_pred HHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 696 WIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
...++++....|.+...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666555666666666666666666666666666666655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0028 Score=58.11 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=37.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 047492 317 LLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS 392 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 392 (806)
+.+..+.+-|.+.+++|.+. .+..|.+-|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 34444455555555555442 233344433333332 22344444444444432 23444444444444444444
Q ss_pred hhHHHHHHHHHHhC
Q 047492 393 THEAYEVLKNSIDH 406 (806)
Q Consensus 393 ~~~a~~~~~~m~~~ 406 (806)
+++|..++++...+
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.1e-06 Score=50.86 Aligned_cols=34 Identities=41% Similarity=0.682 Sum_probs=31.1
Q ss_pred hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCCh
Q 047492 746 YTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQ 779 (806)
Q Consensus 746 ~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~ 779 (806)
.+||++|.+|++ |++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 479999999999 9999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.002 Score=58.57 Aligned_cols=189 Identities=15% Similarity=0.148 Sum_probs=136.9
Q ss_pred CCChHHHHHHHHHHHH---CC-CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047492 565 VKRPDLARAVYELMQR---SG-LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS 640 (806)
Q Consensus 565 ~~~~~~a~~~~~~m~~---~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 640 (806)
..+.++..+++.++.. .| ..|+.-+ .|..++-+....|+.+.|...++.+... ++-+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~------------------l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S 85 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWT------------------LYEQVFIAALDTGRDDLAQKCINQLRDR-FPGS 85 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHH------------------HHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCC
Confidence 3577888888888774 23 4444433 3667777777889999999999998875 3222
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
...-..-.-.+...|++++|.++++.+.+.+ +.|..++---+...-..|+..+|++-+.+....++.|...|.-+...|
T Consensus 86 ~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 86 KRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY 164 (289)
T ss_pred hhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2221111223567899999999999999887 344455555555566678888999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-h---cHHHHHHHHHHHHHcC
Q 047492 721 SGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-S---EIDHACELFNRMRRKG 774 (806)
Q Consensus 721 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g---~~~~A~~~~~~m~~~g 774 (806)
...|++++|.--++++.-. .|.++..+..+...+.. | +.+-|.+.|.+..+..
T Consensus 165 ~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999875 34455555666666655 3 4566777787776553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00047 Score=59.87 Aligned_cols=92 Identities=4% Similarity=-0.082 Sum_probs=54.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 417 ILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
.....+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....++. +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 34445555566666666666655544 345555556666666666666666666666655443 5556666666666666
Q ss_pred CHHHHHHHHHHHHH
Q 047492 497 RADIAARLLVEMEE 510 (806)
Q Consensus 497 ~~~~a~~~~~~m~~ 510 (806)
++++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666655
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00028 Score=61.27 Aligned_cols=92 Identities=8% Similarity=-0.096 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 047492 171 VLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSR 250 (806)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (806)
....++...|++++|...|+......+.+..++..+..++...|++++|...|+.....++ .+...+..+..++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555555555555555555555555555555555555555555433 344455555555555555
Q ss_pred HHHHHHHHHHhhh
Q 047492 251 FEQAGKLLEDFKD 263 (806)
Q Consensus 251 ~~~A~~~~~~~~~ 263 (806)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=49.57 Aligned_cols=32 Identities=41% Similarity=0.676 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCC
Q 047492 746 YTYNILLRRLSV-SEIDHACELFNRMRRKGYEP 777 (806)
Q Consensus 746 ~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p 777 (806)
.+||.++.+|++ |+++.|..+|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999 99999999999999999887
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=49.33 Aligned_cols=33 Identities=45% Similarity=0.718 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS 640 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 640 (806)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999999998887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.5e-05 Score=48.11 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP 639 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 639 (806)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 358889999999999999999999998888877
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00069 Score=58.58 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFN 493 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 493 (806)
....+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|..+++...+.++. +...+..+...|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 34445555566666666666666665554 345556666666666667777777776666655433 5556666666777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHh
Q 047492 494 KSNRADIAARLLVEMEENGHKPTRAL 519 (806)
Q Consensus 494 ~~~~~~~a~~~~~~m~~~~~~p~~~~ 519 (806)
..|++++|...|+...+ ..|+...
T Consensus 97 ~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 97 ALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred HcCCHHHHHHHHHHHHH--hccccch
Confidence 77777777777776666 3444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00021 Score=61.81 Aligned_cols=117 Identities=11% Similarity=-0.013 Sum_probs=83.6
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCC
Q 047492 663 VMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFP 742 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 742 (806)
.++........ +......+...+...|+..+|...++......|.+...+..+...|...|++++|...+++..+. .+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-DP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 44555544332 23445556667778888888888888887777778888888888888888888888888888776 35
Q ss_pred CChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHH
Q 047492 743 LDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFD 783 (806)
Q Consensus 743 ~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~ 783 (806)
.+...+..+...+.. |++++|...|++..+. .|+...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 556677777777777 8888888888877765 34544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00083 Score=68.03 Aligned_cols=125 Identities=18% Similarity=0.106 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
....|+..+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++++..+.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33445555666677777777777777653 33 33346666666667777777777776543 445566666667777
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEME 509 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 509 (806)
+.++.+.|.++.++.....+. +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888887766544 66688888888888888888888877665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00051 Score=69.52 Aligned_cols=122 Identities=16% Similarity=0.070 Sum_probs=63.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCC
Q 047492 136 TLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKK 215 (806)
Q Consensus 136 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 215 (806)
.|+..+...++++.|+.+|+++.+. .|+ ....+++.+...++-.+|..++.+.....+.+...+......+.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 3344444455666666666666554 232 333344555555555555555555555444444444444455555555
Q ss_pred HHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 216 IDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
.+.|.++.++..+..+ .+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 250 ~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555554432 233355555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0046 Score=56.33 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=136.4
Q ss_pred cCChHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHH
Q 047492 619 AMKANLAWGFMREMRH---NG-MYPSMEC-YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLY 693 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~---~g-~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 693 (806)
..+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|..+++.+...- +-+..+...-.-.+-..|...
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4567888888888876 35 5666554 5556666778999999999999997764 333333222222344678999
Q ss_pred HHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 047492 694 EAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR 772 (806)
Q Consensus 694 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~ 772 (806)
+|.+.++......|-+..++---+.+.-.+|+.-+|++.+.+..+. +..|...|--|...|.. |++++|.-.+++|.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888899999999999999988 89999999999999999 999999999999986
Q ss_pred cCCCC-ChhhHHHHHhhhhccC---CHHHHHHHHH
Q 047492 773 KGYEP-DQWTFDILKCGLYNCL---RTDEAERRLE 803 (806)
Q Consensus 773 ~g~~p-~~~~~~~l~~~~~~~g---~~~eA~~~l~ 803 (806)
. .| +...|..+...+.-.| +.+-|.+++.
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4 33 4445555555543332 3444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00046 Score=70.12 Aligned_cols=121 Identities=10% Similarity=0.058 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHH
Q 047492 410 PGKKTLSILADALCRDGKFEQMKDLVIFALER--NIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQ 487 (806)
Q Consensus 410 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 487 (806)
.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555555555555555566666665555543 1222233445666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc
Q 047492 488 LIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNM 530 (806)
Q Consensus 488 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 530 (806)
||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666666666665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0012 Score=57.72 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=54.0
Q ss_pred cCCcchHHHHHHHHHhcCCCCcc---chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCC--HHhHHHHHHHHHhcCCHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDV---TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVS--GFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 253 (806)
.++...+...++.+....+.+.. ....+...+...|++++|...|+.+......++ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44555555555555554443321 233344555555666666666665555442221 1223334455555566666
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHH
Q 047492 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLK 295 (806)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (806)
|+..++..... ......+......+.+.|++++|...|+
T Consensus 104 Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 65555443221 1222334444445555555555555554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00036 Score=70.89 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=73.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 306 EVFRFNFLVSRLLKENRLMEVFDLFMDMKEG--QISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYL 383 (806)
Q Consensus 306 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 383 (806)
+......+++.+....+++++..++-+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344445555555555566666666655544 12222344556777777777777777777666666777777777777
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047492 384 INSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD 425 (806)
Q Consensus 384 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 425 (806)
|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777776666655555556665555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.5e-05 Score=45.06 Aligned_cols=30 Identities=33% Similarity=0.615 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCC
Q 047492 746 YTYNILLRRLSV-SEIDHACELFNRMRRKGY 775 (806)
Q Consensus 746 ~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~ 775 (806)
++||+++++|++ |++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 468888888888 888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00097 Score=52.35 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCC--------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 356 GMVDVAIELYKSRSEFGL-SPNGIVYNYLINSLCGDG--------STHEAYEVLKNSIDHGLFPGKKTLSILADALC 423 (806)
Q Consensus 356 g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 423 (806)
+++...-.+|+.++..|+ .|+..+|+.++.+.++.. +.-..+.+|++|...+++|+..||+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 444444444444433321 12234455555555555555555555555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0013 Score=51.65 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHHH
Q 047492 381 NYLINSLCGDGSTHEAYEVLKNSIDHGL-FPGKKTLSILADALCRDGK--------FEQMKDLVIFALERNIKLRDVTYD 451 (806)
Q Consensus 381 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~ 451 (806)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666667999999999999999999 8999999999998876532 334566677777777777777777
Q ss_pred HHHHHHHh
Q 047492 452 KFISALCK 459 (806)
Q Consensus 452 ~ll~~~~~ 459 (806)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0027 Score=55.39 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC---ccchH
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDD----YAYHVLLNALVEQGCFDAVAVVSKQISMRGFEN---DVTRT 204 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 204 (806)
..|..++..+ ..++...+...++.+... .|+. .+.-.+...+...|++++|...|+.+....+.+ .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3455555555 477788888888888765 3332 223334456777888899999998888876322 23556
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 205 IMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLED 260 (806)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (806)
.|...+...|++++|...++...... .....+....+.|.+.|++++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67788888999999999987754333 3445677788899999999999998875
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=43.94 Aligned_cols=30 Identities=40% Similarity=0.644 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGM 637 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 637 (806)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 488888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.12 Score=51.57 Aligned_cols=449 Identities=14% Similarity=0.107 Sum_probs=209.7
Q ss_pred hcCCcchHHHHHHHHHhcCCCCc------cchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHH--HHhcC
Q 047492 178 EQGCFDAVAVVSKQISMRGFEND------VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDA--LCKNS 249 (806)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g 249 (806)
+.+++.++.++|..+.+..-.++ ..-+.++++|.. ++++.....+....+... ...|-.+..+ +.+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhh
Confidence 45566666666666655433221 223445555543 345555555555544322 1223333322 34567
Q ss_pred CHHHHHHHHHHhhhCC-CCCc------------chhhHHHHHHHHHHcCCHHHHHHHHHhhhhc---CCCCCCcccHHHH
Q 047492 250 RFEQAGKLLEDFKDRD-DVVK------------LEKAYDVWLRNLVRAGRLDLALEFLKSKNSL---EGYVPEVFRFNFL 313 (806)
Q Consensus 250 ~~~~A~~~~~~~~~~~-~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l 313 (806)
.+.+|.+.+....+.- +..| |...-+..++++...|++.++..+++++... .....+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 7777777776655430 1111 1112234455666677777777666665531 2233566666665
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 047492 314 VSRLLKENRLMEVFDLFMDMKE---GQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGD 390 (806)
Q Consensus 314 i~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 390 (806)
+-.+++. .|-++++ ..+-|| |--++-.|.+.=. .++.-.-..+.|.......++....-.
T Consensus 174 vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~ 236 (549)
T PF07079_consen 174 VLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIV 236 (549)
T ss_pred HHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence 4444322 1222211 112222 1112222221100 000000001223333333333332221
Q ss_pred --CChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCh
Q 047492 391 --GSTHEAYEVLKNSIDHGLFPGKK-TLSILADALCRDGKFEQMKDLVIFALERNIKL----RDVTYDKFISALCKANKV 463 (806)
Q Consensus 391 --g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~ 463 (806)
.+..--+++++.-...-+.|+.. ....+...+.. +.+++..+-+.+....+.+ -..++..++....+.++.
T Consensus 237 p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T 314 (549)
T PF07079_consen 237 PKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT 314 (549)
T ss_pred CHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11122223333323333445432 22233333333 4444444444433322111 123566677777777777
Q ss_pred hHHHHHHHHHhhcCCCCCHH-----HHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHh-HH---HHHHHHHcc
Q 047492 464 EVGYLIHSELSRMNKVASEN-----TYIQLIHGFNK----SNRADIAARLLVEMEENGHKPTRAL-HR---AVIRCLCNM 530 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~~~~-----~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~-~~---~ll~~~~~~ 530 (806)
..|.+.+..+.-.++..... +-..+-+..+. .-+...-+.++++..... .|..- .. .-..-+.+.
T Consensus 315 ~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~ 392 (549)
T PF07079_consen 315 EEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEI 392 (549)
T ss_pred HHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhc
Confidence 77777766665443331100 00111122221 112333444555554432 22211 11 122334556
Q ss_pred CCcHHHHHHHHHhHhhCCCCChhhHHHHHH----hhhc---CCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCC
Q 047492 531 ETPAKQFLQLLNMQLSHQETNFQIYNFFID----GAGH---VKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNG 603 (806)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~ 603 (806)
|..++.+..+++....-.+.|...-|.+.. .|.. ...+.+-..+-+-+.+.|+.|-.+...
T Consensus 393 g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~------------ 460 (549)
T PF07079_consen 393 GQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE------------ 460 (549)
T ss_pred CCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH------------
Confidence 665666777776666666666655444332 2221 123344444444555667777555422
Q ss_pred CCchhHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 604 IPRKLYNTLIVG--LCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 604 ~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
..-|.|.+| +..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++..+.
T Consensus 461 ---eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 461 ---EIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ---HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 223444444 4568888888776666665 78899999988877888889999999988764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=58.12 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=34.8
Q ss_pred CChhhHHHHHHHHHH-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 047492 340 PDGVTMNTVLCFFCK-----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG 389 (806)
Q Consensus 340 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 389 (806)
.|..+|..+++.|.+ .|.++-....++.|.+.|+.-|..+|+.|++.+-+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 455666666666653 36667777777777788888888888888777654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00019 Score=55.67 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=56.4
Q ss_pred cccchhhHHHHHHHHHcCCC-CChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHH
Q 047492 723 CIKVSQDIEGLQKMIEQCFP-LDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 723 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~ 800 (806)
+|++++|+.+++++.+.... ++...|-.+..+|.+ |++++|+.++++ ...+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 47788889999998886321 244556667888888 999999999988 322222 23444456888999999999999
Q ss_pred HHHh
Q 047492 801 RLEE 804 (806)
Q Consensus 801 ~l~~ 804 (806)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.2 Score=50.23 Aligned_cols=458 Identities=13% Similarity=0.120 Sum_probs=241.2
Q ss_pred hhccCCHHHHHHHHHHhHhCCCC-C---C-HHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHH--H
Q 047492 210 LCKQKKIDEAVEYFQQLVSGREC-V---S-GFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNL--V 282 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~-~---~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~ 282 (806)
+-+.+++.+|.++|.++.+..-. | . ...-+.++++|.- .+.+.....+....+..+.. .|-.+..++ .
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s----~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKS----AYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH
Confidence 34678899999999888765321 1 1 2334566777654 45666666666665542322 355555543 4
Q ss_pred HcCCHHHHHHHHHhhhhc-CCCCC------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhH
Q 047492 283 RAGRLDLALEFLKSKNSL-EGYVP------------EVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQIS----PDGVTM 345 (806)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~-~~~~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~ 345 (806)
+.+.+++|++.+....+. .+..+ |...-+..++++...|++.++..++++|...-.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888887766542 11111 1112234456777778888877777776654332 567777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 346 NTVLCFFCKAGMVDVAIELYKSRSE---FGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422 (806)
Q Consensus 346 ~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 422 (806)
+.++-.++++ .|-++++ ..+-|+ .| -+|-.|.+. +..++.-.=..+.|....+.+++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd--yY-emilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD--YY-EMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH--HH-HHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHH
Confidence 7766665543 2222222 122222 22 233333221 11111111112445555666666555
Q ss_pred HhcC--ChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHhc
Q 047492 423 CRDG--KFEQMKDLVIFALERNIKLRDV-TYDKFISALCKANKVEVGYLIHSELSRMNKVA----SENTYIQLIHGFNKS 495 (806)
Q Consensus 423 ~~~g--~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~ 495 (806)
.-.. +..--.++++.....-+.|+.. +...++..+.+ +.+++..+.+.+......+ -..++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 3334455555555555666644 33445555544 5566666555544332211 245788888899999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHH-------HHHHHHHccCCcHHHHHHHHHhHhhCCCCCh---hhHHHHH---Hhh
Q 047492 496 NRADIAARLLVEMEENGHKPTRALHR-------AVIRCLCNMETPAKQFLQLLNMQLSHQETNF---QIYNFFI---DGA 562 (806)
Q Consensus 496 ~~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~---~~~ 562 (806)
++...|.+.+.-+.- +.|+...-. .+....+..+........++..-.....-|+ .....++ .-+
T Consensus 312 ~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 312 VQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHL 389 (549)
T ss_pred HhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 999999999888765 445433211 2222333222222333333222111111111 1122222 223
Q ss_pred hcCCC-hHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCC
Q 047492 563 GHVKR-PDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCK---AMKANLAWGFMREMRHNGMY 638 (806)
Q Consensus 563 ~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~ 638 (806)
-+.|. -++|+++++.+.+- .|........ ++..+=.+|.+ ...+.+-+.+-+-+.+.|+.
T Consensus 390 W~~g~~dekalnLLk~il~f--t~yD~ec~n~--------------v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQF--TNYDIECENI--------------VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HhcCCccHHHHHHHHHHHHh--ccccHHHHHH--------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 34454 78889999888843 3322221100 02222223332 12233444444445567887
Q ss_pred CCH----HHHHHHHHH--HHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhh
Q 047492 639 PSM----ECYEELIKL--LCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISL 712 (806)
Q Consensus 639 p~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 712 (806)
|-. ..-+.+.++ +...|++.++.-.-.-+.+ +.|++.++..++-.+....++.+|+..+.... |+..+
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP----~n~~~ 527 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP----PNERM 527 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC----Cchhh
Confidence 743 333333333 4568898888765554443 46788888888888889999999998888774 44444
Q ss_pred HHH
Q 047492 713 LGQ 715 (806)
Q Consensus 713 ~~~ 715 (806)
+++
T Consensus 528 ~ds 530 (549)
T PF07079_consen 528 RDS 530 (549)
T ss_pred HHH
Confidence 443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0028 Score=56.67 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCCcccHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 047492 304 VPEVFRFNFLVSRLLK-----ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGI 378 (806)
Q Consensus 304 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 378 (806)
..|..+|..+++.+.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 4567777777877764 47788888889999999999999999999998764 3221 111111111
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGK 427 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 427 (806)
. - .-.+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 113 -----~-h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -----M-H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----c-c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1 1 123445677778888888888888888888877766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.014 Score=54.99 Aligned_cols=102 Identities=17% Similarity=0.088 Sum_probs=67.0
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhH
Q 047492 651 LCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI 730 (806)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 730 (806)
+.+.++|++|+..|...++...+ +++.|..-..+|.+.|..+.|++-.+.++.-.|.....|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 44566777777777777665433 33333334456677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHH
Q 047492 731 EGLQKMIEQCFPLDTYTYNILLRRL 755 (806)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~li~~~ 755 (806)
+.|++.++ +.|+..+|-.=+...
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHHHH
Confidence 77777777 466666665544443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0029 Score=50.48 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=29.1
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
.+..+...|...|++++|++.+++..+.. +.+..++..+...+.. |++++|...+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444444555555555555555432 2233444455555555 55555555555544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.26 Score=49.04 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 422 (806)
.+.+..|.-+...|+...|.++-++.. .|+..-|...+.+++..++|++-.++... + -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHH
Confidence 345555666667777777777766543 37777788888888888888776665432 1 1335677778888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047492 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHS 471 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 471 (806)
.+.|...+|..++.. ++ +..-+..|.+.|++.+|.+..-
T Consensus 248 ~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 888888777777665 11 2345667778888877776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0079 Score=50.44 Aligned_cols=99 Identities=10% Similarity=-0.115 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CchhHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMY--PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV--TSFIGNTLLL 684 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 684 (806)
+..++..+.+.|++++|...|..+.+.... .....+..+..++.+.|++++|.+.++.+....... ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 567777788888999999988888764211 113455667788888888888888888887654321 1223333334
Q ss_pred HhhccccHHHHHHHHHhhhhccC
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQ 707 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~ 707 (806)
.+...|+..+|...++++....|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCc
Confidence 44444444444444444443333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.006 Score=51.19 Aligned_cols=95 Identities=15% Similarity=-0.020 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC---ccchHHH
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDLD----DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFEN---DVTRTIM 206 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 206 (806)
+..+...+.+.|++++|...|+.+... .|+ ...+..+..++.+.|+++.|...++.+....+.+ ..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344445555556666666666555443 121 2234444555555555555555555555443321 2234444
Q ss_pred HHHhhccCCHHHHHHHHHHhHhCC
Q 047492 207 LKCLCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~~~~~~ 230 (806)
..++.+.|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 455555555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0034 Score=50.01 Aligned_cols=92 Identities=20% Similarity=0.085 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK 214 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 214 (806)
..+...+...|++++|+..|++..+.. ..+...+..+...+...++++.|.+.++......+.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344445555566666666666655431 1122344444555555555555555555555544444444445555555555
Q ss_pred CHHHHHHHHHHhH
Q 047492 215 KIDEAVEYFQQLV 227 (806)
Q Consensus 215 ~~~~a~~~~~~~~ 227 (806)
+.+.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.42 Score=50.52 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHH
Q 047492 213 QKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALE 292 (806)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (806)
-|++++|++++-++-+++. .|..+.+.|++-...++++.--...+-.--...|+.+...++....|++|.+
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677766666655543 3445556666666665554322111111122456666666666666777766
Q ss_pred HHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 047492 293 FLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372 (806)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 372 (806)
.+..-.. -...+.++.+..++++...+-..+. -|....-.+..++.+.|.-++|.+.|-+...
T Consensus 818 yY~~~~~----------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-- 880 (1189)
T KOG2041|consen 818 YYSYCGD----------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL-- 880 (1189)
T ss_pred HHHhccc----------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC--
Confidence 6655432 1223455555555555444433332 2444555566666666666666665543221
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 047492 373 LSPNGIVYNYLINSLCGDGSTHEAYEVLKN 402 (806)
Q Consensus 373 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 402 (806)
|. ..+..|...++|.+|.++-++
T Consensus 881 --pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 --PK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred --cH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 21 234455555666666665544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.43 Score=50.45 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=10.7
Q ss_pred CChhhHHHHHHHHhhc
Q 047492 145 GKPDIALHLFGKMRFQ 160 (806)
Q Consensus 145 ~~~~~A~~~~~~m~~~ 160 (806)
|.+++|.++|-+|.++
T Consensus 748 g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR 763 (1189)
T ss_pred cchhHhhhhhhccchh
Confidence 6677777777666544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.14 Score=50.50 Aligned_cols=20 Identities=0% Similarity=-0.190 Sum_probs=9.2
Q ss_pred HHHhcCChhHHHHHHHHHhh
Q 047492 456 ALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 456 ~~~~~~~~~~a~~~~~~~~~ 475 (806)
++...|+...|.+.++....
T Consensus 205 ~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 205 CHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 33344555555555555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.034 Score=54.97 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=29.2
Q ss_pred HHHhhcc-CCHHHHHHHHHHhHhC----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047492 207 LKCLCKQ-KKIDEAVEYFQQLVSG----REC-VSGFMIGIVVDALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 207 i~~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (806)
...|... |++++|.+.|++..+. +.. .-..++..+...+.+.|++++|.++|++...
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455555 6777777766655431 210 1123445555666666666666666666544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.016 Score=52.40 Aligned_cols=91 Identities=12% Similarity=-0.049 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD--DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 207 (806)
....+..+...|...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++..+..+.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 445566777777788888888888888876532222 356777777788888888888888888877665666677777
Q ss_pred HHhhccCCHHHHH
Q 047492 208 KCLCKQKKIDEAV 220 (806)
Q Consensus 208 ~~~~~~g~~~~a~ 220 (806)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 7777766654443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.092 Score=54.63 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 047492 325 EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKS 367 (806)
Q Consensus 325 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 367 (806)
+...-+++|+++|-.|+..... ..++-.|.+.+|-++|.+
T Consensus 618 ~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHH
Confidence 3444566777888777765433 345556777777777764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.19 Score=48.03 Aligned_cols=174 Identities=7% Similarity=0.016 Sum_probs=105.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-H---HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHh
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSME-C---YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHA 686 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 686 (806)
.....+.+.|++++|...|+++... -|+.. . .-.+..++.+.+++++|...+++..+..+.....-+-....+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 4455567789999999999999884 33322 2 2345677889999999999999998876544332222222111
Q ss_pred h--ccc---------------c---HHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChh
Q 047492 687 L--KTR---------------D---LYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTY 746 (806)
Q Consensus 687 ~--~~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 746 (806)
+ ..+ | ...|...+++.....|.+... .+|...+..+.+. .-..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~~---la~~ 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKDR---LAKY 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHHH---HHHH
Confidence 1 110 1 233445555555444443322 2222222222221 0001
Q ss_pred hHHHHHHHHhh-hcHHHHHHHHHHHHHc--CCCCChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 747 TYNILLRRLSV-SEIDHACELFNRMRRK--GYEPDQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 747 ~~~~li~~~~~-g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
--.+..-|.+ |.+.-|+.-++.+.+. +.+........++.+|.+.|..++|.++...
T Consensus 178 -e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 178 -ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1133455777 8999999999999876 4445556777888999999999999887654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0081 Score=59.01 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHh
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMR 158 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~ 158 (806)
|..++....+.+..+.|..+|.+.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~ 28 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRAR 28 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3334444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0075 Score=54.30 Aligned_cols=95 Identities=14% Similarity=-0.075 Sum_probs=60.4
Q ss_pred cchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHH
Q 047492 129 HQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL--DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIM 206 (806)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (806)
.....|..+...+...|++++|+..|++.......+ ...+|..+...+...|++++|...++......+....++..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 345566667777777788888888888876552222 124667777777778888888888877776655444455555
Q ss_pred HHHhh-------ccCCHHHHHHHH
Q 047492 207 LKCLC-------KQKKIDEAVEYF 223 (806)
Q Consensus 207 i~~~~-------~~g~~~~a~~~~ 223 (806)
...+. ..|+++.|...+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHH
Confidence 55555 455555444333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.019 Score=58.75 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=45.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
...|++++|.+.++++++.. +.+...|..+..+|.+.|++++|...++.....++. +...|..+..+|...|++++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 34455555555555555443 333444555555555555555555555555544433 4445555555555555555555
Q ss_pred HHHHHHHH
Q 047492 503 RLLVEMEE 510 (806)
Q Consensus 503 ~~~~~m~~ 510 (806)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.018 Score=49.24 Aligned_cols=88 Identities=7% Similarity=-0.079 Sum_probs=50.3
Q ss_pred HhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA 763 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A 763 (806)
.+...|++++|.+.|+-...-.|.+..-|-.|..++-..|++++|+..+..+.... +.|...+..+..++.. |+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 34444555555555555555555555555566666666666666666666666653 3455555566666666 666666
Q ss_pred HHHHHHHHHc
Q 047492 764 CELFNRMRRK 773 (806)
Q Consensus 764 ~~~~~~m~~~ 773 (806)
.+.|+.....
T Consensus 123 ~~aF~~Ai~~ 132 (157)
T PRK15363 123 IKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHH
Confidence 6666655533
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.089 Score=50.30 Aligned_cols=57 Identities=7% Similarity=0.045 Sum_probs=32.5
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCccch---HHHHHHhhccCCHHHHHHHHHHhHhCCC
Q 047492 175 ALVEQGCFDAVAVVSKQISMRGFENDVTR---TIMLKCLCKQKKIDEAVEYFQQLVSGRE 231 (806)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~ 231 (806)
.+...|++++|.+.|+.+....+.+..+. -.+..++.+.+++++|...+++.++..+
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34456666666666666666554333322 3445556666666666666666665544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.007 Score=59.43 Aligned_cols=129 Identities=10% Similarity=0.105 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhc-cccHHHHHHHHHhhhhccCcchhhHHHHHHhhh
Q 047492 643 CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALK-TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS 721 (806)
Q Consensus 643 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (806)
+|..+++..-+.+..+.|..+|.+..+.+. .+..+|-.....-.. .++...|.++|+...+..+.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 455566666666666666666666664322 122222222222222 344555777777777667777777777777777
Q ss_pred ccccchhhHHHHHHHHHcCCCCCh---hhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLDT---YTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
+.|+.+.|..+|++.... ++++. ..|...+.-=.+ |+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777765 33332 466666666666 7777777777777654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0095 Score=49.07 Aligned_cols=89 Identities=17% Similarity=0.055 Sum_probs=55.5
Q ss_pred HHHHhhhccccchhhHHHHHHHHHcCCCCC--hhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC--CChhhHHHHHhhh
Q 047492 715 QLIGVFSGCIKVSQDIEGLQKMIEQCFPLD--TYTYNILLRRLSV-SEIDHACELFNRMRRKGYE--PDQWTFDILKCGL 789 (806)
Q Consensus 715 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~ 789 (806)
.+..++-..|+.++|+..+++..+.|.... ...+-.+...+.. |++++|+.++++....... -+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 445566677777777888887777765443 3345555666666 8888888887777654211 0122223344566
Q ss_pred hccCCHHHHHHHHH
Q 047492 790 YNCLRTDEAERRLE 803 (806)
Q Consensus 790 ~~~g~~~eA~~~l~ 803 (806)
...|+.+||.+.+-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 77788888777664
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.012 Score=50.31 Aligned_cols=97 Identities=10% Similarity=-0.004 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
....-.+...+...|++++|..+|+.+... .| +..-|-.|-.++-..|++++|+..|.......+.++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 333444555566778888888888887765 33 334555555566667888888888888887777777777777888
Q ss_pred hhccCCHHHHHHHHHHhHhC
Q 047492 210 LCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~ 229 (806)
+...|+.+.|++.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888877766653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.23 Score=51.90 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=16.2
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 047492 223 FQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLE 259 (806)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (806)
++++.++|-.|+... +...++-.|.+.+|-++|.
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH
Confidence 444555555454332 2234445555555555554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0019 Score=49.99 Aligned_cols=20 Identities=35% Similarity=0.225 Sum_probs=9.4
Q ss_pred HHHhhhccccchhhHHHHHH
Q 047492 716 LIGVFSGCIKVSQDIEGLQK 735 (806)
Q Consensus 716 l~~~~~~~g~~~~A~~~~~~ 735 (806)
++.+|.+.|++++|+.++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0079 Score=61.42 Aligned_cols=101 Identities=9% Similarity=-0.035 Sum_probs=62.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccch
Q 047492 648 IKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVS 727 (806)
Q Consensus 648 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 727 (806)
...+...|++++|++.++++++.... +...+..+...+...|++.+|...++++....|.+...+..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34455667777777777777665432 33445555556666677777777776666666666666666666666667777
Q ss_pred hhHHHHHHHHHcCCCCChhhHHHH
Q 047492 728 QDIEGLQKMIEQCFPLDTYTYNIL 751 (806)
Q Consensus 728 ~A~~~~~~~~~~~~~~~~~~~~~l 751 (806)
+|+..|+++.+. .|+......+
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHH
Confidence 777777666664 3444333333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.029 Score=50.63 Aligned_cols=83 Identities=10% Similarity=-0.041 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 643 CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 643 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
.+..+...+...|++++|...+++..+....+. ...+..+...+...|+.++|...+.++....+.+...+..+..+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344455555556666666666666554432221 123333333344444444444444444433333333444444444
Q ss_pred hcccc
Q 047492 721 SGCIK 725 (806)
Q Consensus 721 ~~~g~ 725 (806)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0081 Score=54.09 Aligned_cols=30 Identities=10% Similarity=-0.179 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGH 670 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 670 (806)
...|..+...+...|++++|...++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l 64 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRL 64 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555555566667777777777766554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.013 Score=55.26 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=78.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047492 422 LCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIA 501 (806)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 501 (806)
+.+.+++.+|...|.+.++.. +-|.+.|..=..+|++.|.++.|++-.+.....++. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 456678888888888888765 556667777778888888888888877777766544 566788888889999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHH
Q 047492 502 ARLLVEMEENGHKPTRALHRAVIRC 526 (806)
Q Consensus 502 ~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (806)
++.|++..+ +.|+..+|..-|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 988888877 78888777665544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.58 Score=46.64 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
+.+..|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++..++-.. .-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555677778899888888866652 47999999999999999999988776432 224477889999999
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEME 509 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 509 (806)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.--+.+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999887663 33667888899999999887755443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.31 Score=42.56 Aligned_cols=129 Identities=16% Similarity=0.060 Sum_probs=81.0
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CCccchHH
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGF--ENDVTRTI 205 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 205 (806)
.|++..--.|..+....|++.+|...|++...--+--|....-.+.++....+++..|...++.+.+..+ .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555666777777777777777777776544445666666666666677777777777777766654 25556666
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLL 258 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (806)
+.+.+...|+..+|+.-|+...+.-+.|....| ....+.+.|+.+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHH
Confidence 667777777777777777777665443333332 234456666655554333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=1.1 Score=48.17 Aligned_cols=109 Identities=11% Similarity=0.057 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 422 (806)
.+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+.+. .+.-|..++.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444555556666677766665544 3666666666667777777766555544432 133455566677
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047492 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIH 470 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 470 (806)
.+.|+.++|.+.+-+.. +.. -.+.+|.+.|++.+|.++.
T Consensus 755 ~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 77777777777665521 111 3556667777776666654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.26 Score=42.97 Aligned_cols=134 Identities=10% Similarity=0.009 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCc--chhhHH
Q 047492 637 MYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQS--KISLLG 714 (806)
Q Consensus 637 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~ 714 (806)
.-|+...-..+..++...|++.+|...+++....-+-.|..+.-.+..+....++...+...+++.-+..|. .+.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456666666677788888888888888888776666666666666666777777777777777777644332 334455
Q ss_pred HHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH----HHHHHHHHH
Q 047492 715 QLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA----CELFNRMRR 772 (806)
Q Consensus 715 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A----~~~~~~m~~ 772 (806)
.+...|...|+.++|...|+..... .|+...-.--..-+.+ |+.++| .++++.+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 6778888899999999999998885 3443322212222344 554444 345555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.19 Score=46.36 Aligned_cols=146 Identities=16% Similarity=0.061 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH----
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFI---- 454 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll---- 454 (806)
+.+.++..+.-.|.+.-....+++.++.....++.....+.+.-.+.|+.+.|...|++..+..-..+..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3444555555556666666666666665544555666666666666666666666666555433233333333332
Q ss_pred -HHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047492 455 -SALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCL 527 (806)
Q Consensus 455 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 527 (806)
..|.-.+++..|...+.++...+.. |+..-|.-.-+..-.|+..+|++.++.|++ ..|...+.++++-.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFNL 329 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHHH
Confidence 3345567777888888888777655 555555444444556888899999999987 567776666655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.045 Score=45.15 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHhcCChhhHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047492 140 GYALAGKPDIALHLFGKMRFQGMDLD--DYAYHVLLNALVEQGCFDAVAVVSKQISMR 195 (806)
Q Consensus 140 ~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (806)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444555555555555555443322 123333444444455555555555444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.65 E-value=1.4 Score=48.10 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=130.7
Q ss_pred CcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHH----HhcCChhhHHHHHHHHhhcCCCCChh
Q 047492 92 FHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGY----ALAGKPDIALHLFGKMRFQGMDLDDY 167 (806)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~A~~~~~~m~~~~~~p~~~ 167 (806)
+.........-+..+.+...+..|..+-+.-.. +..+...+...| -+.|++++|...|-+-... +.|
T Consensus 330 ~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~-----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~--- 400 (933)
T KOG2114|consen 330 HELIEKDLETKLDILFKKNLYKVAINLAKSQHL-----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP--- 400 (933)
T ss_pred eeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh---
Confidence 344566778889999999999999888776543 444444555444 4579999999988776533 223
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 047492 168 AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK 247 (806)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (806)
..++.-|............++.+.+.|..+...-+.|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+
T Consensus 401 --s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 401 --SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRK 475 (933)
T ss_pred --HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHH
Confidence 2455566666677777888899999999999989999999999999999888777665 3321 1234567778888
Q ss_pred cCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 248 NSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 248 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
.+-.++|..+-...... ...... .+-..+++++|++++..+.
T Consensus 476 snyl~~a~~LA~k~~~h------e~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKKH------EWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred hChHHHHHHHHHHhccC------HHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 88888888776655432 222222 2345688999999998875
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.035 Score=54.39 Aligned_cols=132 Identities=11% Similarity=-0.026 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH----HhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCCCch
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREM----RHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHG-----RQVTSF 677 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m----~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 677 (806)
+|..|...|.-.|+++.|+..-+.- ++.|-+. ....+..+.+++.-.|+++.|.+.++...... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4777777888889999998665432 2234332 23456778888888999999999887654332 344566
Q ss_pred hHHHHHHHhhccccHHHHHHHHHhhh------hccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 678 IGNTLLLHALKTRDLYEAWIRLRGML------INEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 678 ~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.+.+|...|.-..++..|+.++.+.. ...........+|..+|...|..++|+...+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77888888888889999999888765 334456667888999999999999988877766553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.46 Score=44.01 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=60.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHH-----Hh
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL-----HA 686 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-----~~ 686 (806)
++....-.|.+.-.+.++++.++...+-++.....+.+.-...|+.+.|...++...+..-..+....+.++. .+
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 3334444445555555555555543344444455555555555666666666655544433333333333222 23
Q ss_pred hccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 687 LKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 687 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
+.+++...|.+.+.+....++.++...|.-+-...-.|+..+|++..+.|...
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445555555555555444444444444333333344555555555555543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0034 Score=46.22 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=19.8
Q ss_pred ccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 724 IKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 724 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
|++++|++.|+++.+. .|.+...+..+..+|.. |++++|..+++++.
T Consensus 5 ~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444443 22233334444444444 44444444444444
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.94 Score=45.07 Aligned_cols=131 Identities=12% Similarity=-0.045 Sum_probs=78.4
Q ss_pred hhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCC
Q 047492 562 AGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH---NGMY 638 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~~ 638 (806)
+.-..+.+.|...|++..+ +.|+......+....- -...+..=..-..+.|++..|.+.|.+.+. .+..
T Consensus 213 ~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k------~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPK------KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred cccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHH------HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 3446778888888888774 4566544211110000 001123333445678999999999999886 2455
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHH--HHHhhccccHHHHHHHHHhhh
Q 047492 639 PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTL--LLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 639 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~ 703 (806)
|+...|.....+..+.|+.++|+.-.++..+.+. .++.-.+ ..++...+++++|.+.++.+.
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~---syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDS---SYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777778899999999998888765531 1111111 112334455666666666654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0069 Score=44.01 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=25.6
Q ss_pred hhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHH
Q 047492 686 ALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIE 738 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 738 (806)
+.+.|++++|...++++....|.+...+..+..++...|++++|+..|+++.+
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555555555555555555555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.086 Score=56.50 Aligned_cols=134 Identities=9% Similarity=-0.035 Sum_probs=75.8
Q ss_pred CCChhhHHHHHHHHHhcC-----CcchHHHHHHHHHhcCCCCccchHHHHHHhhccC--------CHHHHHHHHHHhHhC
Q 047492 163 DLDDYAYHVLLNALVEQG-----CFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK--------KIDEAVEYFQQLVSG 229 (806)
Q Consensus 163 ~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~ 229 (806)
..+..+|...+++..... ....|..+|++..+..+.....+..+..++.... ++..+.+..+.....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 345667777776654322 2456777777777776665555555444332211 122333333332222
Q ss_pred -CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 230 -RECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 230 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
....+..+|.++.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.+++...
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12233455666655555667777777777776654 35566677777777777777777777776654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.011 Score=42.88 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=41.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 453 FISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 453 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+...+.+.|++++|.+.|+.+.+..+. +...+..+..++...|++++|...|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777777777777777776644 667777777777778888888877777765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=43.21 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=29.1
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+.|++++|.++|+.+....+. +...+..+..+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666665555444 555555566666666666666666665554
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.11 Score=55.71 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=57.8
Q ss_pred cCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHH
Q 047492 706 EQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFD 783 (806)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~ 783 (806)
.+.+..++.++.-.+...|++++|...++++.+. .|+...|..+...|.. |+.++|.+.+++..+. .|...||.
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLY 490 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHH
Confidence 4455566777766777789999999999999986 4688888899999988 9999999999888765 45544544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.056 Score=51.39 Aligned_cols=115 Identities=9% Similarity=-0.021 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhc---cccchhhHHHH
Q 047492 657 YDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSG---CIKVSQDIEGL 733 (806)
Q Consensus 657 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 733 (806)
.+....-++.-...+ +-|...|..|...|...|+...|...|..+..-.++++..+..+..++.. .....++..+|
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 344444444444443 45677788888888888888888888888888778888777777776643 34556778888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 734 QKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 734 ~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
+++.+.. +.|+.+..-|...+.. |++.+|...|+.|.+.
T Consensus 217 ~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 217 RQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 8888752 3445555555566666 8888888888888866
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.17 Score=48.25 Aligned_cols=109 Identities=12% Similarity=0.002 Sum_probs=81.7
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHH--HccCCcHHHHHHHHHhHhh
Q 047492 470 HSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPT-RALHRAVIRCL--CNMETPAKQFLQLLNMQLS 546 (806)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~ 546 (806)
++.-...++. |...|..|...|...|+.+.|..-|....+ +.|+ +..+..+-.++ ...+........+++....
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3344444555 888888888888888888888888888877 2332 33333333333 3445556777778888888
Q ss_pred CCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC
Q 047492 547 HQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS 581 (806)
Q Consensus 547 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 581 (806)
..+.|+.....+...+...|++.+|...|+.|.+.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999965
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=2.1 Score=46.18 Aligned_cols=341 Identities=12% Similarity=0.058 Sum_probs=182.8
Q ss_pred cCCcchhHHHH-----HHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc--chHHHHHHHHHhcCCC
Q 047492 126 RYYHQVRFNDT-----LVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF--DAVAVVSKQISMRGFE 198 (806)
Q Consensus 126 ~~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~ 198 (806)
|++.+..-|.. +|.-+...+.+..|+++-..+...-..- ...|......+.+..+. +++.+...+=......
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 67777666654 4667777888999999988886432121 45666666666665322 2333333222222234
Q ss_pred CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhH
Q 047492 199 NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV----SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAY 274 (806)
Q Consensus 199 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 274 (806)
+..+|..+.+..-..|+.+-|..+++.=...+... +..-+...+.-..+.|+.+-...++-.+... .+...+
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~----~~~s~l 581 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK----LNRSSL 581 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH----HHHHHH
Confidence 56688888888888999999988877544433211 2223445555666677777777766665543 011111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH--HHH----hCCCCCChhhHHHH
Q 047492 275 DVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFM--DMK----EGQISPDGVTMNTV 348 (806)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~m~----~~g~~~~~~~~~~l 348 (806)
...+ .+.--|..+|.......+ .. .+-+ +.+.++-.++..-|. ... ..|..|+. ...
T Consensus 582 ~~~l------~~~p~a~~lY~~~~r~~~----~~---~l~d-~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~ 644 (829)
T KOG2280|consen 582 FMTL------RNQPLALSLYRQFMRHQD----RA---TLYD-FYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTA 644 (829)
T ss_pred HHHH------HhchhhhHHHHHHHHhhc----hh---hhhh-hhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHH
Confidence 1111 112233333333332111 00 0111 111222222221111 100 01222222 222
Q ss_pred HHHHHHcCCh----------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 047492 349 LCFFCKAGMV----------DVAIELYKSRSE-FGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSI 417 (806)
Q Consensus 349 l~~~~~~g~~----------~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 417 (806)
...+.+.... .+-.++.+.+.. .|..-.-.+.+--+.-+...|+..+|.++-.+.+ .||...|-.
T Consensus 645 a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wL 720 (829)
T KOG2280|consen 645 ANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWL 720 (829)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHH
Confidence 3333333221 111222222221 2322223344445556667788888888766654 468888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 047492 418 LADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNR 497 (806)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 497 (806)
-+.+++..+++++-+++-+.. -++.-|.-++.+|.+.|+.++|.+++..+... .-...+|.+.|+
T Consensus 721 k~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~ 785 (829)
T KOG2280|consen 721 KLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGD 785 (829)
T ss_pred HHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhcc
Confidence 888888888888866665432 12456777888888999999888887655211 156778888888
Q ss_pred HHHHHHHHHH
Q 047492 498 ADIAARLLVE 507 (806)
Q Consensus 498 ~~~a~~~~~~ 507 (806)
+.+|.++--+
T Consensus 786 ~~eAad~A~~ 795 (829)
T KOG2280|consen 786 VKEAADLAAE 795 (829)
T ss_pred HHHHHHHHHH
Confidence 8888776544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.4 Score=43.97 Aligned_cols=271 Identities=14% Similarity=0.004 Sum_probs=130.6
Q ss_pred HHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHH
Q 047492 140 GYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 140 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 219 (806)
.+.+..++..|+..+....+.... +..-|..-...+...|+++++.--.+.-.+........+.-.-+++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 345666777788888877766322 3445555566666677777776666555554433333555555566666666666
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHH-HHHHHHcCCHHHHHHHHHhhh
Q 047492 220 VEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVW-LRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~ 298 (806)
.+.++.- ..+ ....|+..++.......-+|...+|..+ ..++...|+.++|.+.--.++
T Consensus 137 ~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 137 EEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 6655511 111 1112222222222221112322333222 223344566666655544444
Q ss_pred hcCCCCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-------------HHHHHHcCChHHHHH
Q 047492 299 SLEGYVPEVFRFNFLVSR--LLKENRLMEVFDLFMDMKEGQISPDGVTMNTV-------------LCFFCKAGMVDVAIE 363 (806)
Q Consensus 299 ~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-------------l~~~~~~g~~~~a~~ 363 (806)
... .+..+...+++ +.-.++.+.+...|++-+..+ ||...-..+ -+-..+.|.+..|.+
T Consensus 197 kld----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 197 KLD----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred hcc----cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 311 12222233322 223455566666666555432 333221111 112335566677777
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH-HH--HHHHhcCChhHHHHHHHH
Q 047492 364 LYKSRSE---FGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSI-LA--DALCRDGKFEQMKDLVIF 437 (806)
Q Consensus 364 ~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll--~~~~~~g~~~~a~~~~~~ 437 (806)
.|.+.+. .++.++...|........+.|+.++|+.--++...- |...... +. .++...++|++|.+-++.
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554 223344445555555566666666666665555432 2222211 11 223344566666666665
Q ss_pred HHHC
Q 047492 438 ALER 441 (806)
Q Consensus 438 ~~~~ 441 (806)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 5544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.2 Score=44.78 Aligned_cols=103 Identities=9% Similarity=-0.014 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHhHhcc---CCcchhHHHHHHHHHHh---cCChhhHHHHHHHHhhcCCCCChh
Q 047492 94 HTRATFHAIFKLLHCAKLTPLMVDFLENYKKDR---YYHQVRFNDTLVMGYAL---AGKPDIALHLFGKMRFQGMDLDDY 167 (806)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~ 167 (806)
.++.....++-++....+++.+.++++.+.... +..+..+--...-++.+ .|+.++|++++..+....-.+++.
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 355566666667888888999999999888751 22233333345556666 788999999998866555567788
Q ss_pred hHHHHHHHHHh----c-----CCcchHHHHHHHHHhcC
Q 047492 168 AYHVLLNALVE----Q-----GCFDAVAVVSKQISMRG 196 (806)
Q Consensus 168 ~~~~ll~~~~~----~-----~~~~~a~~~~~~~~~~~ 196 (806)
+|..+.+.|.. + ...++|+..|.+.-+..
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 88877776653 1 12456777777666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.4 Score=43.54 Aligned_cols=219 Identities=15% Similarity=0.099 Sum_probs=93.5
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccH--HHHHHHHH---hcC
Q 047492 247 KNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRF--NFLVSRLL---KEN 321 (806)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~---~~~ 321 (806)
+.|..+.|.+.-++.-.. -+--...+...+...+..|+|+.|+++++.-+...-+.+++.-- ..|+.+-. -..
T Consensus 166 r~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 345555555554444332 11112345555555555566666665555554433344443221 11221111 112
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 322 RLMEVFDLFMDMKEGQISPDGVTM-NTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 322 ~~~~a~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
+...|...-.+..+ +.||..-- ..-..++.+.|++.++-.+++.+-+.. |....+.. ..+.+.|+ .+..-+
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHH
Confidence 23333333333222 23432221 122345556666666666666655543 33222221 12223333 222222
Q ss_pred HHHHh-CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhhcC
Q 047492 401 KNSID-HGLFP-GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA-NKVEVGYLIHSELSRMN 477 (806)
Q Consensus 401 ~~m~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~ 477 (806)
++... ...+| +......+..+....|++..|..--+.... ..|....|..|.+.-... |+-.++...+.+..+..
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 22221 11222 233444445555555666555544443333 245555665555544333 66666666665555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.022 Score=41.97 Aligned_cols=63 Identities=8% Similarity=0.023 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 047492 447 DVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN-RADIAARLLVEMEE 510 (806)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 510 (806)
..+|..+...+...|++++|...|++..+.++. +...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445666666677777777777777777666554 5666667777777777 57777777766654
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.6 Score=43.91 Aligned_cols=129 Identities=10% Similarity=0.083 Sum_probs=104.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhh
Q 047492 643 CYEELIKLLCSTKNYDMVVGVMNHLEGHG-RQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS 721 (806)
Q Consensus 643 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (806)
.|...+++..+..-++.|..+|-++.+.+ ..++++++++.+..++ .||...|.++|+--....+.+....+-.+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45667777778888999999999999998 5778889888887654 577788888888888778777777777777778
Q ss_pred ccccchhhHHHHHHHHHcCCCCC--hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLD--TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.-++-+.|..+|++..++ +..+ ...|..+|.-=.. |+...+..+=++|...
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 889999999999987775 4444 6789999988788 9998888888877754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.26 Score=45.86 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=20.3
Q ss_pred hcCCcchHHHHHHHHHhcCCCCcc---chHHHHHHhhccCCHHHHHHHHHHhHh
Q 047492 178 EQGCFDAVAVVSKQISMRGFENDV---TRTIMLKCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~ 228 (806)
..|++++|...|+.+....+.+.. +...++.++-+.|+++.|...++.+++
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444332211 233334444444444444444444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.011 Score=43.52 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC-CHHHHHHHHHH
Q 047492 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK-KIDEAVEYFQQ 225 (806)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~ 225 (806)
|..+...+...|++++|+..|++..+..+.+...+..+..++...| ++++|.+.+++
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3333333444444444444444444433333334444444444444 34444444433
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.29 Score=45.53 Aligned_cols=174 Identities=9% Similarity=-0.044 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch--hHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGM--YPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF--IGNTLLL 684 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~ 684 (806)
+-.....+...|++++|...|+.+...-. +-.....-.++.++.+.|++++|...++...+..+..... .+..+..
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33556667789999999999999997421 1223445567888999999999999999988765443322 1112222
Q ss_pred Hhhc-----------cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHH
Q 047492 685 HALK-----------TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLR 753 (806)
Q Consensus 685 ~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 753 (806)
++.. .+....|...++......|.+..+- +|...+..+.+. .... --.+..
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~~---la~~-e~~ia~ 149 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRNR---LAEH-ELYIAR 149 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHHH---HHHH-HHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHHH---HHHH-HHHHHH
Confidence 2211 1223345555555554444444332 222222222221 0001 112345
Q ss_pred HHhh-hcHHHHHHHHHHHHHc--CCCCChhhHHHHHhhhhccCCHHHHHH
Q 047492 754 RLSV-SEIDHACELFNRMRRK--GYEPDQWTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 754 ~~~~-g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~eA~~ 800 (806)
-|.+ |.+.-|..-++.+.+. +..-.......++.++.+.|..+.|..
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 5677 8888888888888876 222223455678888888888875543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.079 Score=51.06 Aligned_cols=93 Identities=13% Similarity=-0.014 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCc---cchHHH
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDLDD----YAYHVLLNALVEQGCFDAVAVVSKQISMRGFEND---VTRTIM 206 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l 206 (806)
|...+..+.+.|++++|+..|+.+.+. .|+. .++..+..+|...|+++.|...|+.+....+.+. .++..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445555555555555443 2322 2344444444455555555555555544433222 122223
Q ss_pred HHHhhccCCHHHHHHHHHHhHh
Q 047492 207 LKCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~~~~ 228 (806)
...+...|+.++|..+|+.+++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444455555554444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.042 Score=48.03 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=54.4
Q ss_pred hhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 047492 711 SLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR-----KGYEPDQWTFDI 784 (806)
Q Consensus 711 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 784 (806)
.+...++..+...|++++|+..++++... -|.|...|..+|.+|.. |+..+|++.|+++.+ .|+.|+..+-..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 34566777788899999999999999987 46778899999999999 999999999988763 399999877553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.12 Score=43.19 Aligned_cols=100 Identities=8% Similarity=-0.058 Sum_probs=69.6
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
|..++..++.++++.|+.+....+++..- |+.++...-..- --......|+..+..+++.+|+..|++..|+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~--~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd 76 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD--YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVD 76 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc--cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45678888999999999999998887765 333322110000 00011246777888899999999999999999988
Q ss_pred HHHh-CCCCCCHHHHHHHHHHHHcC
Q 047492 631 EMRH-NGMYPSMECYEELIKLLCST 654 (806)
Q Consensus 631 ~m~~-~g~~p~~~~~~~l~~~~~~~ 654 (806)
...+ .+++.+..+|..|++-....
T Consensus 77 ~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 77 FFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 8877 37777888888888765543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.096 Score=43.71 Aligned_cols=50 Identities=8% Similarity=-0.070 Sum_probs=25.1
Q ss_pred CCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHH
Q 047492 266 DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVS 315 (806)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 315 (806)
...|+..+..+++.+|+..|++..|+++++...+..+++.+..+|..|++
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455555555555555555555555555555444444444444544443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.5 Score=42.72 Aligned_cols=163 Identities=13% Similarity=0.045 Sum_probs=87.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSEFG---LSPNGIVYNYLINSLCG---DGSTHEAYEVLKNSIDHGLFPGKKTLSILAD 420 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 420 (806)
.++-+|....+++...++++.+...- +.-....-....-++.+ .|+.++|.+++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445666667777777777766521 11111112223334455 6777777777777555555566677766665
Q ss_pred HHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hh---HHHHHH---H-HHhhcCC---CC
Q 047492 421 ALCR---------DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK-VE---VGYLIH---S-ELSRMNK---VA 480 (806)
Q Consensus 421 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~---~a~~~~---~-~~~~~~~---~~ 480 (806)
.|-. ....++|...|.+.-+.. |+...--.++..+...|. .+ +..++- . ...+++. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5421 113556666666544432 333222122222222332 21 112221 1 1222332 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047492 481 SENTYIQLIHGFNKSNRADIAARLLVEMEEN 511 (806)
Q Consensus 481 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 511 (806)
+-..+.+++.+..-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4455678889999999999999999999874
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.77 E-value=2.6 Score=42.58 Aligned_cols=144 Identities=12% Similarity=0.133 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHH
Q 047492 482 ENTYIQLIHGFNKSNRADIAARLLVEMEENG-HKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFID 560 (806)
Q Consensus 482 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (806)
...|...+....+..-.+.|..+|-+..+.| +.++...+++.+..++.... ..+...++......+.++.--+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~--~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDR--ATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCc--chHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456677777777777888888888888887 66777777888877766554 34445555555555555555556666
Q ss_pred hhhcCCChHHHHHHHHHHHH----CCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047492 561 GAGHVKRPDLARAVYELMQR----SGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNG 636 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 636 (806)
.+..-++-+.|..+|+.... ...+| .|..+|+-=..-|+...+..+=+.|.+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~----------------------iy~kmi~YEs~~G~lN~v~sLe~rf~e-- 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKR----------------------IYDKMIEYESMVGSLNNVYSLEERFRE-- 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhH----------------------HHHHHHHHHHhhcchHHHHhHHHHHHH--
Confidence 66677777778888874432 22221 377777777777777777777777766
Q ss_pred CCCCHHHHHHHHHHH
Q 047492 637 MYPSMECYEELIKLL 651 (806)
Q Consensus 637 ~~p~~~~~~~l~~~~ 651 (806)
+-|...+...+..-|
T Consensus 531 ~~pQen~~evF~Sry 545 (660)
T COG5107 531 LVPQENLIEVFTSRY 545 (660)
T ss_pred HcCcHhHHHHHHHHH
Confidence 445444444443333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.068 Score=39.83 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=44.3
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047492 455 SALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA 518 (806)
Q Consensus 455 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 518 (806)
..|.+.+++++|.++++.+...++. +...|......+.+.|++++|.+.|+...+ ..|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcH
Confidence 4567777788888888777777655 667777777778888888888888887776 344433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.12 Score=50.86 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=20.3
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCcc----chHHHHHHhhccCCHHHHHHH
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDV----TRTIMLKCLCKQKKIDEAVEY 222 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~ 222 (806)
+|+.|+......+|+...+.|-.+-. .|..|..+|.-.+++++|+++
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 34444444444444444444433221 233334444444445555444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.084 Score=46.13 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHh
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE-----NGHKPTRAL 519 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 519 (806)
....++..+...|+++.|..+.+.+...++. |...|..+|.+|...|+...|.+.|+++.. -|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455666677788888888888888777666 777888888888888888888888887643 377776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.12 Score=48.09 Aligned_cols=71 Identities=27% Similarity=0.305 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----------------ChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 356 GMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG----------------STHEAYEVLKNSIDHGLFPGKKTLSILA 419 (806)
Q Consensus 356 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~a~~~~~~m~~~~~~p~~~~~~~ll 419 (806)
+.++-....++.|.+.|+..|..+|+.|+..+-+.. +-+-+++++++|...|+.||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 334444444555555555555555555555443321 1233455555666666666655555555
Q ss_pred HHHHhcC
Q 047492 420 DALCRDG 426 (806)
Q Consensus 420 ~~~~~~g 426 (806)
+++.+.+
T Consensus 166 n~FGr~~ 172 (406)
T KOG3941|consen 166 NAFGRWN 172 (406)
T ss_pred HHhcccc
Confidence 5555444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.27 Score=47.39 Aligned_cols=103 Identities=17% Similarity=0.022 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCc--chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC----hhhH
Q 047492 96 RATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYH--QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD----DYAY 169 (806)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~ 169 (806)
...|...+..+.+.|+++.+...|+.+....+.. ....+-.+...|...|++++|+..|+.+.+. .|+ ..++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 5677777777778899999999999998863221 1457778889999999999999999999865 333 3455
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCCc
Q 047492 170 HVLLNALVEQGCFDAVAVVSKQISMRGFEND 200 (806)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 200 (806)
-.+...+...|+.+.|..+|+.+.+..+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5566677789999999999999988766443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.058 Score=40.23 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=23.6
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHh
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 228 (806)
+.+.++++.|.++++.+...++.+...+.....++...|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.45 Score=50.65 Aligned_cols=159 Identities=16% Similarity=0.076 Sum_probs=94.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch------hHHHHHHHhh----ccccHHHHHHHHHhhhhccCcchhhHH
Q 047492 645 EELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF------IGNTLLLHAL----KTRDLYEAWIRLRGMLINEQSKISLLG 714 (806)
Q Consensus 645 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~ 714 (806)
..++....=.||-+.+++.+....+.+-...+. .|+..+...+ ...+...+.+++.......|....-.-
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 345555666677777777666655432111111 1222221111 245677778888887777777666666
Q ss_pred HHHHhhhccccchhhHHHHHHHHHcC---CCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHH-Hhhh
Q 047492 715 QLIGVFSGCIKVSQDIEGLQKMIEQC---FPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDIL-KCGL 789 (806)
Q Consensus 715 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~ 789 (806)
--...+...|+.++|++.++++.... .+.....+--+...+.. ++|++|.+.|.++.+..-- +..+|..+ ..++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 66677778888888888888766421 11122333344555555 9999999999999875322 33344432 2334
Q ss_pred hccCCH-------HHHHHHHHh
Q 047492 790 YNCLRT-------DEAERRLEE 804 (806)
Q Consensus 790 ~~~g~~-------~eA~~~l~~ 804 (806)
...|+. ++|.+++.+
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHH
Confidence 568887 777777765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.13 E-value=6.6 Score=43.26 Aligned_cols=179 Identities=13% Similarity=0.087 Sum_probs=84.2
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHH
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSG--FMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRN 280 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (806)
...-+..+.+...++-|..+.+.- +..++. .......+-+.+.|++++|..-|-+-... +.| ..+|.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHH
Confidence 344444555555555555443321 221111 12223334445566666666665554421 222 123334
Q ss_pred HHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH
Q 047492 281 LVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV 360 (806)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 360 (806)
|....+..+-..+++.+.+ .|+ .+...-..|+++|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~-~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHK-KGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHH-ccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 4444444444455555543 332 233344566677777777666655554433 2211 1123445555556666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 361 AIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 361 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
|..+-..... +......++. ..+++++|++++..|.
T Consensus 482 a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 6655443322 2333333333 3466777777766553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.01 E-value=3.2 Score=47.47 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR 690 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 690 (806)
....-+.+.+.+++|.-+|...-+ ....+.+|...|+|.+|..+..++.... .--..+-..+...+...+
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcc
Confidence 333444445555555555544322 1234455666666666666655542211 000111133444445555
Q ss_pred cHHHHHHHHHhh
Q 047492 691 DLYEAWIRLRGM 702 (806)
Q Consensus 691 ~~~~a~~~~~~~ 702 (806)
+.-+|-+++.+.
T Consensus 1014 kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1014 KHYEAAKILLEY 1025 (1265)
T ss_pred cchhHHHHHHHH
Confidence 555555554444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.045 Score=41.51 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=27.8
Q ss_pred hHHHHHHHHhh-hcHHHHHHHHHHHHHc----CC-CCC-hhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 747 TYNILLRRLSV-SEIDHACELFNRMRRK----GY-EPD-QWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 747 ~~~~li~~~~~-g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
+|+.+...|.. |++++|+..|++..+. |- .|+ ..++..+..++...|+.++|++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444 5555555555554422 11 111 33455555556666666666665543
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.2 Score=42.48 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=36.9
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhC
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 229 (806)
....|++..|..+|.......+.+......++.+|...|+++.|..++..+...
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 445667777777777777666666666667777777777777777777766543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.88 E-value=2.3 Score=36.70 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=23.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 047492 204 TIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248 (806)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (806)
..++..+...+.+.....+++.+...+. .+....+.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3445555555555566666665555542 4445555666665544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.1 Score=38.96 Aligned_cols=88 Identities=7% Similarity=-0.054 Sum_probs=61.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047492 421 ALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADI 500 (806)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 500 (806)
-+...|++++|..+|.-+.-.+ ..+..-+..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3456678888888887776655 344555666677777777888888877766554443 55556667777888888888
Q ss_pred HHHHHHHHHH
Q 047492 501 AARLLVEMEE 510 (806)
Q Consensus 501 a~~~~~~m~~ 510 (806)
|...|...++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888877776
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.5 Score=37.82 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 047492 171 VLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSR 250 (806)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (806)
.++..+...+.......+++.+...+..+...++.++..|++.+ .....+.++. . .+......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHHcCc
Confidence 34444444444445555555544444334444555555554432 2222222221 0 112233345555555555
Q ss_pred HHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHc-CCHHHHHHHHHh
Q 047492 251 FEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRA-GRLDLALEFLKS 296 (806)
Q Consensus 251 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~ 296 (806)
++++..++..+.. |...+..+... ++.+.|.+++.+
T Consensus 85 ~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 85 YEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 5555555554422 23333333333 555556555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.17 Score=51.49 Aligned_cols=66 Identities=11% Similarity=-0.016 Sum_probs=38.4
Q ss_pred cCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCCh----hhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 706 EQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDT----YTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.|.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.. |+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555666666666666666666666666664 3332 235566666666 6666666666665543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.74 Score=39.92 Aligned_cols=83 Identities=12% Similarity=-0.070 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHH
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELF 767 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~ 767 (806)
.|++++|..+|+-...-.+.+..-|..|...+-..+++++|+..+..+...+ ..|+..+-.+..++.. |+.+.|...|
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 3333333333333333333333344444444555555555555555544432 2333334444444444 5555555555
Q ss_pred HHHHH
Q 047492 768 NRMRR 772 (806)
Q Consensus 768 ~~m~~ 772 (806)
+....
T Consensus 129 ~~a~~ 133 (165)
T PRK15331 129 ELVNE 133 (165)
T ss_pred HHHHh
Confidence 55544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.98 Score=47.34 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHH
Q 047492 237 MIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSR 316 (806)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 316 (806)
-.+.++.-+-+.|..+.|+++...-..+ .....+.|+++.|.++.++. .+...|..|...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKEL-------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHH
Confidence 3455555555566666665554332221 22334455555555543332 234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 047492 317 LLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEA 396 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 396 (806)
..+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 5555555555555544322 3444444555555555555544444433 123333333334555544
Q ss_pred HHHHH
Q 047492 397 YEVLK 401 (806)
Q Consensus 397 ~~~~~ 401 (806)
.+++.
T Consensus 422 v~lL~ 426 (443)
T PF04053_consen 422 VDLLI 426 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=5.5 Score=39.62 Aligned_cols=252 Identities=13% Similarity=0.101 Sum_probs=146.0
Q ss_pred cCCHHHHHHHHHHhhhCCCCCcchh--hHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-cccHHHHHHHHHhcCCHH
Q 047492 248 NSRFEQAGKLLEDFKDRDDVVKLEK--AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-VFRFNFLVSRLLKENRLM 324 (806)
Q Consensus 248 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 324 (806)
.|+++.|.+-|+.|... |... -...|.-..-+.|+.+.|.++-+..-. ..|. ...+...+...+..|+|+
T Consensus 133 eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 133 EGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred cCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChH
Confidence 56777777777776643 2111 122222233456777878777776643 3344 456778888888999999
Q ss_pred HHHHHHHHHHhCC-CCCChh--hHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCChhHHH
Q 047492 325 EVFDLFMDMKEGQ-ISPDGV--TMNTVLCFFCK---AGMVDVAIELYKSRSEFGLSPNGIVY-NYLINSLCGDGSTHEAY 397 (806)
Q Consensus 325 ~a~~~~~~m~~~g-~~~~~~--~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~ 397 (806)
.|+++++.-+... +.+|.. .-..|+.+-.. .-+...|...-.+..+ +.||..-- -.-..++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 9999888665532 334432 22233333221 2244455554444433 34554322 23356788888999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047492 398 EVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALER-NIKL-RDVTYDKFISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 398 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 475 (806)
.+++.+-+....|+ .+. +....+.|+ .+..-+++.... .++| +......+..+-...|++..|..--+...+
T Consensus 284 ~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99988887755544 222 223344454 233333332221 1233 445556677777788888877766555543
Q ss_pred cCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC
Q 047492 476 MNKVASENTYIQLIHGFNKS-NRADIAARLLVEMEENGHKPT 516 (806)
Q Consensus 476 ~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~ 516 (806)
. .|....|..|.+.-... |+-.++...+.+.....-.|+
T Consensus 358 ~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 358 E--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred h--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 3 34566677776665544 888888888888877655554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.36 Score=48.01 Aligned_cols=140 Identities=13% Similarity=-0.038 Sum_probs=91.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR 690 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 690 (806)
.-...|.+.|++..|...|++.... +. +.+.-+.++....... -..+++.+.-.+.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEAL--------KLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHHH--------HHHHhhHHHHHHHhhh
Confidence 3446677777887777777765541 00 1111111221111111 1124455666777888
Q ss_pred cHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh--h-cHHHHHHHH
Q 047492 691 DLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV--S-EIDHACELF 767 (806)
Q Consensus 691 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g-~~~~A~~~~ 767 (806)
++..|......++...+++.-.+..-..+|...|+++.|+..|+++++. .|+......=+..|.+ . ..++..++|
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888999999999999999999995 5666666555555544 3 345557888
Q ss_pred HHHHHc
Q 047492 768 NRMRRK 773 (806)
Q Consensus 768 ~~m~~~ 773 (806)
..|-..
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 888754
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.3 Score=45.66 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=64.8
Q ss_pred CCcccHHHHHHHHH-----hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC----------------ChHHHHH
Q 047492 305 PEVFRFNFLVSRLL-----KENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAG----------------MVDVAIE 363 (806)
Q Consensus 305 ~~~~~~~~li~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----------------~~~~a~~ 363 (806)
.|..+|-..+..+. +.+.++-....++.|.+-|+..|..+|+.|++.+-+.. +-+-+.+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 34445555554443 23445555566667777777777777777776654321 2345788
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHH
Q 047492 364 LYKSRSEFGLSPNGIVYNYLINSLCGDGST-HEAYEVLKNSI 404 (806)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 404 (806)
++++|..+|+.||..+-..|+.++.+.+-. .+..+++-.|.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999999876653 33344443443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.1 Score=39.58 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 642 ECYEELIKLLCSTKNYDMVVGVMNHLEG 669 (806)
Q Consensus 642 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 669 (806)
.+|..+...|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666666666666666543
|
... |
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.15 E-value=7.3 Score=39.43 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=67.7
Q ss_pred HHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-h
Q 047492 680 NTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-S 758 (806)
Q Consensus 680 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g 758 (806)
..|+.-|...|++.+|.+.+++.-...-+...+..+++.+.-+.|+...-+.+++..++.| ..|-|.|-++|.+ .
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhhhh
Confidence 4466778889999999999999877777788889999999999998877778888877764 5667777777766 2
Q ss_pred c--------HHHHHHHHHHHHHcC
Q 047492 759 E--------IDHACELFNRMRRKG 774 (806)
Q Consensus 759 ~--------~~~A~~~~~~m~~~g 774 (806)
+ ...|.+.|+...+.+
T Consensus 589 dsl~DlsLDvPna~ekf~~~Ve~~ 612 (645)
T KOG0403|consen 589 DSLPDLSLDVPNAYEKFERYVEEC 612 (645)
T ss_pred ccCcccccCCCcHHHHHHHHHHHH
Confidence 1 233555555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.9 Score=46.03 Aligned_cols=169 Identities=13% Similarity=0.089 Sum_probs=102.7
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHCC-CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHh----cCChHHHHHHH
Q 047492 555 YNFFIDGAGHVKRPDLARAVYELMQRSG-LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCK----AMKANLAWGFM 629 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~ 629 (806)
...++...+-.|+-+.+++.+.+..+.+ +..... ...++. |...+..++. ..+.+.|.+++
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la-~L~LL~-------------y~~~~~~~~~~~~~~~~~~~a~~lL 256 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLA-ALVLLW-------------YHLVVPSFLGIDGEDVPLEEAEELL 256 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHH-HHHHHH-------------HHHHHHHHcCCcccCCCHHHHHHHH
Confidence 4556677777899999999988876532 222221 112221 5555554443 44678899999
Q ss_pred HHHHhCCCCCCHHHHHHHH-HHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCc
Q 047492 630 REMRHNGMYPSMECYEELI-KLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQS 708 (806)
Q Consensus 630 ~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 708 (806)
+.+.+ --|+...|...- +.+...|++++|++.++........ +. +-
T Consensus 257 ~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-----~~--------------------------Ql 303 (468)
T PF10300_consen 257 EEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-----WK--------------------------QL 303 (468)
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-----HH--------------------------hH
Confidence 99887 356665554332 3345689999999999876532110 00 01
Q ss_pred chhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh--hcH-------HHHHHHHHHHH
Q 047492 709 KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV--SEI-------DHACELFNRMR 771 (806)
Q Consensus 709 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g~~-------~~A~~~~~~m~ 771 (806)
....+.-+...+.-..++++|.+.|..+.+. ...+...|.-+..+|.- |+. ++|.++|.+..
T Consensus 304 ~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 304 HHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 1223344555666777888888888888775 34445555555544443 766 77777777765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.52 Score=38.42 Aligned_cols=92 Identities=13% Similarity=-0.004 Sum_probs=67.0
Q ss_pred HhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChh---hHHHHHHHHhh-hcH
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTY---TYNILLRRLSV-SEI 760 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~-g~~ 760 (806)
++...|+++.|++.|.+...-.|...+.||.-..+|.-+|+.++|++-++++.+...+.... .|-.-...|.. |+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45567788888888888887788888889999999999999999999999988853222322 22233344555 888
Q ss_pred HHHHHHHHHHHHcCCC
Q 047492 761 DHACELFNRMRRKGYE 776 (806)
Q Consensus 761 ~~A~~~~~~m~~~g~~ 776 (806)
+.|..=|+..-+.|-+
T Consensus 132 d~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 132 DAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhHHHHHHhCCH
Confidence 8888877777766654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.54 Score=46.79 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=71.5
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHH-HHHh
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFD-ILKC 787 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~ 787 (806)
..+++.+...|.+.+++.+|+....+.++.+ ++|+-..---..+|.. |+++.|...|++++.. .|+..... -|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4567788899999999999999999999974 6666666667888888 9999999999999975 56544444 4555
Q ss_pred hhhccCCH-HHHHHHHHhhC
Q 047492 788 GLYNCLRT-DEAERRLEEMF 806 (806)
Q Consensus 788 ~~~~~g~~-~eA~~~l~~m~ 806 (806)
+-.+.... +...+++.+|+
T Consensus 334 l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 54444444 44478888875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.87 E-value=3.3 Score=43.56 Aligned_cols=132 Identities=13% Similarity=0.091 Sum_probs=84.0
Q ss_pred cchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHH
Q 047492 201 VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRN 280 (806)
Q Consensus 201 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (806)
.-.+.++.-+-+.|..+.|+++..+-. .-.+...+.|+++.|.++.++. .+...|..|...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHH
Confidence 346667777777777777777643321 2234556777888777765332 245578888888
Q ss_pred HHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH
Q 047492 281 LVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV 360 (806)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 360 (806)
..+.|+++-|.+.|.+... |..++-.|.-.|+.+...++.+.....|- ++....++.-.|++++
T Consensus 357 AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEE 420 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHH
Confidence 8888888888888877654 66677777778887777777776666542 4555556666677777
Q ss_pred HHHHHHH
Q 047492 361 AIELYKS 367 (806)
Q Consensus 361 a~~~~~~ 367 (806)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.85 E-value=3.2 Score=34.24 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 047492 310 FNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL 373 (806)
Q Consensus 310 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 373 (806)
+...++.+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 444556666777777777777766542 245666666667777777777777777777666664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.81 Score=46.78 Aligned_cols=67 Identities=12% Similarity=-0.102 Sum_probs=52.3
Q ss_pred CCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047492 127 YYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDD----YAYHVLLNALVEQGCFDAVAVVSKQISMR 195 (806)
Q Consensus 127 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (806)
.+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777888888888888888888888887766 5553 35788888888888888888888888765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.72 E-value=4.1 Score=37.71 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 047492 620 MKANLAWGFMREMRHN---G--MYPSMECYEELIKLLCSTKNYDMVVGVMNH 666 (806)
Q Consensus 620 ~~~~~A~~~~~~m~~~---g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 666 (806)
.++++|+++|++...- + .+.-...|...-+.+.+...+++|-..+.+
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 3456666666654431 1 112233455566667777777776665544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.72 E-value=3.4 Score=34.09 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
.....+..+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344455555566666666666665532 23455555566666666666666666666655555
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.39 E-value=8.7 Score=37.82 Aligned_cols=17 Identities=41% Similarity=0.374 Sum_probs=11.9
Q ss_pred HHHcCChHHHHHHHHHH
Q 047492 352 FCKAGMVDVAIELYKSR 368 (806)
Q Consensus 352 ~~~~g~~~~a~~~~~~~ 368 (806)
+.+.++++.|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45677888888777743
|
It is also involved in sporulation []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.31 E-value=5.3 Score=35.14 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=22.7
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 047492 221 EYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLE 259 (806)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (806)
+++..+.+.++.++...+..+++.+.+.|++....++++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344445555666666666666666666666555444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.06 E-value=7.4 Score=36.08 Aligned_cols=25 Identities=12% Similarity=0.002 Sum_probs=14.7
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHH
Q 047492 555 YNFFIDGAGHVKRPDLARAVYELMQ 579 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~m~ 579 (806)
|.-...+|...+++++|..-+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4445556666666666666555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.06 E-value=4 Score=42.15 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=23.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 277 WLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDM 333 (806)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (806)
+..++-+.|+.++|++.+.++.+.............|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333344444555555544444431111112223334444444445555544444443
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=5.2 Score=36.26 Aligned_cols=178 Identities=16% Similarity=0.127 Sum_probs=103.9
Q ss_pred CCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047492 565 VKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECY 644 (806)
Q Consensus 565 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 644 (806)
.|-+.-|.-=|.+.. .+.|+... .||.+.--+...|+++.|.+.|+...+....-+-...
T Consensus 78 lGL~~LAR~DftQaL--ai~P~m~~------------------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 78 LGLRALARNDFSQAL--AIRPDMPE------------------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred hhHHHHHhhhhhhhh--hcCCCcHH------------------HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 355555555555544 45676654 5999999999999999999999999984322233333
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc--cHHHHHHHHHhhhhccCcchhhHHH-HHHhhh
Q 047492 645 EELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR--DLYEAWIRLRGMLINEQSKISLLGQ-LIGVFS 721 (806)
Q Consensus 645 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~ 721 (806)
+.-| ++.-.|++.-|.+-+-..-+.+.. |+ ...+|.|+... +..+|..-+.+-.. ..+..-|+. ++..|.
T Consensus 138 NRgi-~~YY~gR~~LAq~d~~~fYQ~D~~-DP---fR~LWLYl~E~k~dP~~A~tnL~qR~~--~~d~e~WG~~iV~~yL 210 (297)
T COG4785 138 NRGI-ALYYGGRYKLAQDDLLAFYQDDPN-DP---FRSLWLYLNEQKLDPKQAKTNLKQRAE--KSDKEQWGWNIVEFYL 210 (297)
T ss_pred ccce-eeeecCchHhhHHHHHHHHhcCCC-Ch---HHHHHHHHHHhhCCHHHHHHHHHHHHH--hccHhhhhHHHHHHHH
Confidence 3222 233578999998877777665432 22 22345555433 34444444433332 334344433 333333
Q ss_pred ccccchhhHHHHHHHHHcCCCCC-------hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLD-------TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.+-.. ..+++++..- -..+ ..||--|.+-+.. |+.++|..+|+-....
T Consensus 211 gkiS~---e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 211 GKISE---ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhccH---HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22211 2334444332 1212 3467777777888 9999999999877755
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.97 Score=42.70 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=54.5
Q ss_pred hccccHHHHHHHHHhhhhccCcchhh---HHHHHHhhhccccchhhHHHHHHHHHcC--CCCChhhHHHHHHHHhh-hcH
Q 047492 687 LKTRDLYEAWIRLRGMLINEQSKISL---LGQLIGVFSGCIKVSQDIEGLQKMIEQC--FPLDTYTYNILLRRLSV-SEI 760 (806)
Q Consensus 687 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~-g~~ 760 (806)
+++|++..|...|.....+.|.+..+ +..|..++...|++++|..+|..+.+.- .+.-+..+--|..+... |+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 34455555555555555555544433 3346677778888888888888777741 11223455555556666 888
Q ss_pred HHHHHHHHHHHHc
Q 047492 761 DHACELFNRMRRK 773 (806)
Q Consensus 761 ~~A~~~~~~m~~~ 773 (806)
++|...|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888765
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.92 E-value=18 Score=40.24 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=36.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhc---
Q 047492 488 LIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGH--- 564 (806)
Q Consensus 488 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 564 (806)
....+.-.|+++.|++++-+ ..+...+.+.+...+..+.-..-.......++.....+ +.+.-+..+|..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~--~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGD--PPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCC--CCCcCHHHHHHHHHHHHh
Confidence 34445556777777777665 22234445545444444332222111111111111111 111446666766665
Q ss_pred CCChHHHHHHHHHHHHC
Q 047492 565 VKRPDLARAVYELMQRS 581 (806)
Q Consensus 565 ~~~~~~a~~~~~~m~~~ 581 (806)
..++.+|.+.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35677777777766643
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.8 Score=40.88 Aligned_cols=105 Identities=12% Similarity=-0.037 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHHH
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMY--PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTLL 683 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 683 (806)
.|+.-+.. .+.|++.+|...|...++.... -....+--|..++...|++++|..+|..+.+.-.+.. +-..--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 37665554 4678899999999999985211 1223344588999999999999999999877543221 12333344
Q ss_pred HHhhccccHHHHHHHHHhhhhccCcchhhH
Q 047492 684 LHALKTRDLYEAWIRLRGMLINEQSKISLL 713 (806)
Q Consensus 684 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 713 (806)
......|+.++|+.+++++....|......
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 456677777888877777776666655443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.30 E-value=3.3 Score=35.09 Aligned_cols=80 Identities=10% Similarity=-0.032 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhHhc--cCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 047492 98 TFHAIFKLLHCAKLTPLMVDFLENYKKD--RYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA 175 (806)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 175 (806)
.+..-.....+.|++..|.+.|+.+..+ ..+-...+--.++.+|-+.+++++|+..+++..+......-.-|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3333344445666777777777777665 11223344445666677777777777777777665322222344444444
Q ss_pred HH
Q 047492 176 LV 177 (806)
Q Consensus 176 ~~ 177 (806)
++
T Consensus 92 L~ 93 (142)
T PF13512_consen 92 LS 93 (142)
T ss_pred HH
Confidence 44
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.20 E-value=8.3 Score=37.52 Aligned_cols=153 Identities=8% Similarity=-0.045 Sum_probs=94.2
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhC-C--CCCCHHhHHHHHHHHHhcCCHHH
Q 047492 177 VEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSG-R--ECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~--~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
...|...+|...++++.+..|.+-.++.-.-.+|.-.|+.+.....++++... + .+-.+.+-..+.-++..+|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34667777777778887777667777777777888888888888888877754 2 21122223334445556788888
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC---cccHHHHHHHHHhcCCHHHHHHHH
Q 047492 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE---VFRFNFLVSRLLKENRLMEVFDLF 330 (806)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~ 330 (806)
|++.-++..+. .+.|...-.+..+.+--.|+..++.++..+-..... ..+ ..-|-...-.+...+.++.|+++|
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88887776653 233445556666777777888888887766433111 000 011112222344557777888877
Q ss_pred HH
Q 047492 331 MD 332 (806)
Q Consensus 331 ~~ 332 (806)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 74
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.08 E-value=7.6 Score=33.87 Aligned_cols=123 Identities=16% Similarity=0.069 Sum_probs=63.6
Q ss_pred HhcCChhhHHHHHHHHhhcCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CCcc---chHHHHHHhhccCCH
Q 047492 142 ALAGKPDIALHLFGKMRFQGMDLDDY-AYHVLLNALVEQGCFDAVAVVSKQISMRGF-ENDV---TRTIMLKCLCKQKKI 216 (806)
Q Consensus 142 ~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---~~~~li~~~~~~g~~ 216 (806)
++.++.++|+.-|..+.+.|...=+. .--.+.......|+...|...|+++-.... |-.. ....-.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34556666666666666554332111 111112234456666666666666654432 2111 111122234456666
Q ss_pred HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047492 217 DEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDR 264 (806)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 264 (806)
++...-.+-+...+.+.-...-.+|.-+-.+.|++.+|.+.|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666655554444334444555666666777777777777776654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.54 Score=44.78 Aligned_cols=103 Identities=11% Similarity=0.153 Sum_probs=72.4
Q ss_pred CCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhcc-----CCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC
Q 047492 91 HFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDR-----YYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD 165 (806)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 165 (806)
|.+++..+....+.......+++.+...+-.++... ...+..+|-.++. .-++++++.++..=.+.|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 455566666667777676777888888877776641 1122333333333 2367788888888888999999
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 047492 166 DYAYHVLLNALVEQGCFDAVAVVSKQISMRGF 197 (806)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 197 (806)
.++++.+++.+.+.+++..|..+.-+|.....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999988888877777665543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.96 E-value=5.1 Score=38.89 Aligned_cols=149 Identities=5% Similarity=-0.052 Sum_probs=66.7
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcch----hhHHHHHHhhhccccchh
Q 047492 653 STKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKI----SLLGQLIGVFSGCIKVSQ 728 (806)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 728 (806)
-.|+.-+|...++++++. ++.|....+..=.++.-.|+.......+++....-.++. .+...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345555555555555543 233333333334445555555555555555543222222 222333333345666666
Q ss_pred hHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc---CCCCChhhHHHHHhhhhccCCHHHHHHHHH
Q 047492 729 DIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK---GYEPDQWTFDILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~ 803 (806)
|++..++..+. .+.|...-.+....+.. |++.++.+...+-.+. |--.-...|-+..-.+...+.++.|+++++
T Consensus 194 AEk~A~ralqi-N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQI-NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccC-CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 66666655554 13333333344444444 6666665554332211 111111223333333444566666666554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.81 E-value=14 Score=36.36 Aligned_cols=227 Identities=16% Similarity=0.067 Sum_probs=128.9
Q ss_pred hcCCChHHHHHHHHHHHHCC--CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 047492 563 GHVKRPDLARAVYELMQRSG--LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN----- 635 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----- 635 (806)
.+.|+.+.|...+.+..... ..|+... .+-.. .|+.-.+.+.+..++++|...+++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~--~La~~-----------~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~ 70 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAE--ELARV-----------CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG 70 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHH--HHHHH-----------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh
Confidence 46789999999999987532 2333322 22221 1655555554444888887777665442
Q ss_pred ---CCCCC-----HHHHHHHHHHHHcCCChh---HHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhh
Q 047492 636 ---GMYPS-----MECYEELIKLLCSTKNYD---MVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLI 704 (806)
Q Consensus 636 ---g~~p~-----~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 704 (806)
...|+ ..++..++.+|...+..+ +|..+++.+..... ..+.++-.-+..+.+.++.+++.+.+.++..
T Consensus 71 ~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 71 KMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred hccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 22333 245777888888777654 45666666654433 2344444555666668999999999999998
Q ss_pred ccCcchhhHHHHHHhhh--ccccchhhHHHHHHHHHcCCCCChh-hHHHHHHH----Hhh-hc------HHHHHHHHHHH
Q 047492 705 NEQSKISLLGQLIGVFS--GCIKVSQDIEGLQKMIEQCFPLDTY-TYNILLRR----LSV-SE------IDHACELFNRM 770 (806)
Q Consensus 705 ~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~----~~~-g~------~~~A~~~~~~m 770 (806)
........+...+..+. .......|...+..++...+.|... ....++-. ... ++ .+...++++..
T Consensus 150 ~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 150 SVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred hcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 77755555655555542 1123345666666666544554443 11111111 111 11 34444455543
Q ss_pred HHc-CCCCChhhHHHH-------HhhhhccCCHHHHHHHHH
Q 047492 771 RRK-GYEPDQWTFDIL-------KCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 771 ~~~-g~~p~~~~~~~l-------~~~~~~~g~~~eA~~~l~ 803 (806)
... +.+.+..+-.++ +..+.+.+++++|.++++
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 322 333344333322 344667999999999987
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.66 E-value=1 Score=43.27 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=61.1
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH-----cCCCCChhhHH
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR-----KGYEPDQWTFD 783 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 783 (806)
..++..++..+..+|+.+.+.+.+++..+. -+-+...|..++.+|.+ |+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345667788888888888888888888886 36677788888888888 888888888887775 48888887777
Q ss_pred HHHhhh
Q 047492 784 ILKCGL 789 (806)
Q Consensus 784 ~l~~~~ 789 (806)
.+..++
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.36 Score=31.44 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=7.6
Q ss_pred HHHHHhcCChhhHHHHHHHH
Q 047492 138 VMGYALAGKPDIALHLFGKM 157 (806)
Q Consensus 138 i~~~~~~~~~~~A~~~~~~m 157 (806)
...|.+.|++++|+++|++.
T Consensus 8 a~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.43 E-value=2.3 Score=34.89 Aligned_cols=88 Identities=14% Similarity=-0.064 Sum_probs=42.0
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHH---hHHHHHHHHHhcCCHH
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGF---MIGIVVDALCKNSRFE 252 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~ 252 (806)
++..|+.+.|++.|.+....-+.....||.-..++.-.|+.++|.+=+++..+.....+.. .|..-...|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3445555555555555555444455555555555555555555555555544432211111 1222223344556666
Q ss_pred HHHHHHHHhhh
Q 047492 253 QAGKLLEDFKD 263 (806)
Q Consensus 253 ~A~~~~~~~~~ 263 (806)
.|..-|+..-+
T Consensus 133 ~AR~DFe~AA~ 143 (175)
T KOG4555|consen 133 AARADFEAAAQ 143 (175)
T ss_pred HHHHhHHHHHH
Confidence 66555555433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.37 E-value=9.2 Score=33.39 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCcc--chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHH-hHHH--H
Q 047492 167 YAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDV--TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGF-MIGI--V 241 (806)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~--l 241 (806)
.+|...+. +++.+..++|+.-|..+.+.|..+-. ............|+...|...|+++-.-...|-.. -... -
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 34566778888888888887764322 33344455677888888888888887655444322 1111 1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 242 VDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
.-.+...|.+++.....+-+... +.+.-...-..|--+-.+.|++.+|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22345678888877777766544 3333333334455555677777777777777765
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.28 E-value=29 Score=38.97 Aligned_cols=228 Identities=11% Similarity=-0.040 Sum_probs=126.6
Q ss_pred hhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHH-HHhcCChHHHHHHHHHHHhC----C
Q 047492 562 AGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVG-LCKAMKANLAWGFMREMRHN----G 636 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~----g 636 (806)
.....++++|..++.+....=-.|+...-..+. ..|+.+-.. ....|++++|..+.+...+. -
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~------------ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLL------------AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 345688999999998877542233222111111 124443322 34478899999988887763 2
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHH-----Hhhcccc--HHHHHHHHHhhh----hc
Q 047492 637 MYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL-----HALKTRD--LYEAWIRLRGML----IN 705 (806)
Q Consensus 637 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~--~~~a~~~~~~~~----~~ 705 (806)
..+....+..+..+..-.|++++|..+.....+.....+++.+..... .+...|. ..+....+.... ..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 334556677777777889999999999998887766666655544332 2334452 222223232222 12
Q ss_pred cCcch---hhHHHHHHhhhccccchhhHHHHHHHHHcC----CCCChhhHH--HHHHHHhh-hcHHHHHHHHHHHHHcCC
Q 047492 706 EQSKI---SLLGQLIGVFSGCIKVSQDIEGLQKMIEQC----FPLDTYTYN--ILLRRLSV-SEIDHACELFNRMRRKGY 775 (806)
Q Consensus 706 ~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~--~li~~~~~-g~~~~A~~~~~~m~~~g~ 775 (806)
.+... .+...+..++.+ .+.+..-.....+.| ..|-...+. .|...... |+.++|....+++.....
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred cccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 22222 223333344433 444444333333332 122222222 55566666 999999999999886643
Q ss_pred CC----ChhhHHHHHhh--hhccCCHHHHHHHHHh
Q 047492 776 EP----DQWTFDILKCG--LYNCLRTDEAERRLEE 804 (806)
Q Consensus 776 ~p----~~~~~~~l~~~--~~~~g~~~eA~~~l~~ 804 (806)
.+ +-.+-...+.. ....|+.++|...+.+
T Consensus 650 ~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 650 NGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 33 33333333333 3568998888887765
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=5.3 Score=41.18 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHc---------CCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc
Q 047492 622 ANLAWGFMREMRH-NGMYPS-MECYEELIKLLCS---------TKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR 690 (806)
Q Consensus 622 ~~~A~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 690 (806)
.+.|+.+|.+... ..+.|+ ...|..+..++.. .....+|.+..+...+.+ ..|+...-.+.....-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4678888988883 236665 3344444333321 123345666666666665 345555555555566667
Q ss_pred cHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCCh---hhHHHHHHHHhhhcHHHHHHHH
Q 047492 691 DLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDT---YTYNILLRRLSVSEIDHACELF 767 (806)
Q Consensus 691 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~g~~~~A~~~~ 767 (806)
+...|...|+++..-.|....++........-+|+.++|.+.+++..+. .|.. ......++.|.....++|+++|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 7888888888888777877777777777777788888888888887774 3332 2222334455556677777776
Q ss_pred HH
Q 047492 768 NR 769 (806)
Q Consensus 768 ~~ 769 (806)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 44
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.14 E-value=17 Score=35.97 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH
Q 047492 395 EAYEVLKNSIDHGLFPGKKTLS 416 (806)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~ 416 (806)
++.++++.+.+.|+++....|.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcCCcccccccc
Confidence 4555555555555555544443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=6 Score=40.83 Aligned_cols=81 Identities=9% Similarity=-0.147 Sum_probs=49.6
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-hhhHHHHHHHHhh-hcHHHHHHH
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~-g~~~~A~~~ 766 (806)
..+..+|.+..+.+.+-.+.|......+..+....++.+.|...|+++... .|| ...|-.....+.. |+.++|.+.
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345566666666666666667666666666666666677777777776664 333 3344444444455 777777766
Q ss_pred HHHHH
Q 047492 767 FNRMR 771 (806)
Q Consensus 767 ~~~m~ 771 (806)
+++..
T Consensus 395 i~~al 399 (458)
T PRK11906 395 IDKSL 399 (458)
T ss_pred HHHHh
Confidence 66644
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.90 E-value=7.1 Score=33.17 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=38.2
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCc---cchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 047492 177 VEQGCFDAVAVVSKQISMRGFEND---VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALC 246 (806)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (806)
.+.|++++|.+.|+.+..+.+.+. .+...++.+|.+.|++++|...++..++..+.....-|-..+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 355566666666666665554322 2455556666666666666666666666554433344444444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.94 Score=29.45 Aligned_cols=28 Identities=4% Similarity=-0.040 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCC
Q 047492 451 DKFISALCKANKVEVGYLIHSELSRMNK 478 (806)
Q Consensus 451 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 478 (806)
..+...|...|++++|.++++...+..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3344444444444444444444444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.65 E-value=19 Score=35.66 Aligned_cols=129 Identities=17% Similarity=0.248 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH--cC----ChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCC-
Q 047492 323 LMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK--AG----MVDVAIELYKSRSEFGL---SPNGIVYNYLINSLCGDGS- 392 (806)
Q Consensus 323 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~- 392 (806)
+++.+.+++.|.+.|+.-+..+|-+....... .. ...++..+|+.|++... .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777888888887777666554333332 11 24567777777776432 1333445555433 2222
Q ss_pred ---hhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047492 393 ---THEAYEVLKNSIDHGLFPGKK--TLSILADALCRDGK--FEQMKDLVIFALERNIKLRDVTYDKF 453 (806)
Q Consensus 393 ---~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 453 (806)
.+.+..+|+.+.+.|...+.. ....++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 244566666666656543322 22222222211111 33566666666666666665555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.56 E-value=7.2 Score=40.16 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCC---ChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 745 TYTYNILLRRLSV-SEIDHACELFNRMRRKGYEP---DQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 745 ~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
..+|..++..+.+ |.++.|...+.++...+... +..........+-..|+.++|...+++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4456666666666 66666666666666543211 122222334445556666666666654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.51 E-value=12 Score=33.07 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=72.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 047492 363 ELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALER- 441 (806)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 441 (806)
+.++.+.+.+++|+...+..+|+.+.+.|++. .+..+...++.+|.......+-.+.. ....+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 44555666777777777777777777777654 34445556666666665554433322 223333333333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 442 NIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 442 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+ ..+..+++.+...|++-+|.++.+..... +......++.+-.+.++...-..+++-..+
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 13445666677777777777776654222 122234455555555555444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.35 E-value=3.2 Score=40.00 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHhHHH
Q 047492 448 VTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE-----NGHKPTRALHRA 522 (806)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 522 (806)
.++..++..+...|+.+.+...++++....+. +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35666777888888888888888888877766 788888888888888888888888888765 477776665444
Q ss_pred HHHH
Q 047492 523 VIRC 526 (806)
Q Consensus 523 ll~~ 526 (806)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.17 E-value=9.1 Score=34.79 Aligned_cols=80 Identities=15% Similarity=0.025 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 047492 189 SKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVV 268 (806)
Q Consensus 189 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 268 (806)
|.+.....+.-+.+||-|.-.+...|+++.|.+.|+...+.++.-+-...|.-|. +.-.|+++-|.+-|...-+.+...
T Consensus 88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCC
Confidence 3333333343444556555556666666666666666665554333223332222 223466666655555444432333
Q ss_pred c
Q 047492 269 K 269 (806)
Q Consensus 269 ~ 269 (806)
|
T Consensus 167 P 167 (297)
T COG4785 167 P 167 (297)
T ss_pred h
Confidence 3
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.10 E-value=22 Score=34.28 Aligned_cols=117 Identities=6% Similarity=0.020 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHhHh-CCCCCCHHhHHHHHHHHHh-cC-CHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHH
Q 047492 215 KIDEAVEYFQQLVS-GRECVSGFMIGIVVDALCK-NS-RFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLAL 291 (806)
Q Consensus 215 ~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 291 (806)
-+.+|.++|+..-. ..+--|..+...+++.... .+ ....-.++.+-+....+..++..+...++..+++.++|.+-+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555565553221 2233455555555554444 11 122222333333332245555566666666666666666666
Q ss_pred HHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 047492 292 EFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFM 331 (806)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 331 (806)
++++......+..-|...|..+|......|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 6666655433444566666666666666666554444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.9 Score=43.79 Aligned_cols=127 Identities=7% Similarity=-0.016 Sum_probs=80.2
Q ss_pred HHHHcCCChhHHHHHHHHH-HhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccch
Q 047492 649 KLLCSTKNYDMVVGVMNHL-EGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVS 727 (806)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 727 (806)
.-....|++-.|.+-+... ....-.|+-....+ ......|+++.+...+..+.........+...++....+.|+++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 3344577777766544444 33333333322222 23446688888888888887777777777888888888888888
Q ss_pred hhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC
Q 047492 728 QDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD 778 (806)
Q Consensus 728 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~ 778 (806)
+|....+-|....+. +...........-. |-+++++..|+++...+.+-+
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 888888888775433 23322222222233 788888888888876644333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.93 E-value=5.3 Score=34.64 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=26.8
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh
Q 047492 651 LCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 703 (806)
-.+.++.+++..+++.+.-..+.... .--.-.+.++..|++.+|.++++++.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e-~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPE-LDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34577888888888877665433221 11112233444455555555544443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.51 E-value=23 Score=33.56 Aligned_cols=22 Identities=5% Similarity=-0.124 Sum_probs=11.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 047492 315 SRLLKENRLMEVFDLFMDMKEG 336 (806)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~m~~~ 336 (806)
-++.+.+++++|+..+++....
T Consensus 79 yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 79 YAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHhcccHHHHHHHHHHHHHh
Confidence 3444555555555555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.49 E-value=23 Score=33.55 Aligned_cols=56 Identities=14% Similarity=-0.067 Sum_probs=36.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNGMYP---SMECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
+..-|.+.|.+-.|..-+++|++. .+- ....+..+..+|...|..++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445567777777777777777774 222 23445566677777777777777655543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.46 E-value=25 Score=33.99 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHc-C-CHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 047492 251 FEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRA-G-RLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFD 328 (806)
Q Consensus 251 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 328 (806)
+.+|+.+|+.......+.-|..+...+++..... + ....--++.+-+....+..++..+...+|..++..++|.+..+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555553222113444455555555554441 1 1122222222233223334444455555555555555555555
Q ss_pred HHHHHHhC-CCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 047492 329 LFMDMKEG-QISPDGVTMNTVLCFFCKAGMVDVAIELYK 366 (806)
Q Consensus 329 ~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 366 (806)
+++..... +..-|...|..+|+.....|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 55544433 333355555555555555555444444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.35 E-value=16 Score=38.03 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 237 MIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
+-..+..++.+.|+.++|.+.|++|.+......+......++.++...+.+.++..++.+..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33445566667788888888888776542222334566777888888888888888777754
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.24 E-value=26 Score=33.91 Aligned_cols=120 Identities=14% Similarity=0.002 Sum_probs=54.9
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047492 352 FCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQM 431 (806)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 431 (806)
....|++.+|..+|+...+.. +-+...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345566666666666655432 1223344455666666666666666666654332111111111122223333333333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047492 432 KDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELS 474 (806)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 474 (806)
..+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3332222211 2244444455555555666666655444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.10 E-value=0.027 Score=49.07 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=50.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHc
Q 047492 205 IMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRA 284 (806)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (806)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.+..+++++... . .....+++.|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhc
Confidence 3456666677777777777777766655666777777777777777677666665211 1 1223445555555
Q ss_pred CCHHHHHHHHHhh
Q 047492 285 GRLDLALEFLKSK 297 (806)
Q Consensus 285 g~~~~a~~~~~~~ 297 (806)
|.+++|.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 5555555555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.52 Score=29.00 Aligned_cols=23 Identities=13% Similarity=-0.070 Sum_probs=10.7
Q ss_pred HHHHHhhhhccCCHHHHHHHHHh
Q 047492 782 FDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 782 ~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
+..|..+|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.72 E-value=43 Score=35.86 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=27.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 047492 619 AMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTK 655 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 655 (806)
.++.+.|..++.++.+. +.++...|..+++.+...+
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 67788999999998874 5567777888877766554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.28 E-value=45 Score=35.68 Aligned_cols=102 Identities=15% Similarity=-0.055 Sum_probs=58.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCChhHHH---HHHHHHHhCCCCCCchhHHHHH-----HHhhcc
Q 047492 619 AMKANLAWGFMREMRHNGMYPSMEC-YEELIKLLCSTKNYDMVV---GVMNHLEGHGRQVTSFIGNTLL-----LHALKT 689 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~ 689 (806)
.|+++.|..+++.+.+.- |+..- -..-+....+.|+.+.+. +++..... |..... +.+.+. ..+.-.
T Consensus 379 ~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~-i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNG-ILEKLYVKFARLRYKIR 454 (577)
T ss_pred hccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcc-hhHHHHHHHHHHHHHHh
Confidence 678888888888888752 44321 112233445677777776 33333322 211111 111111 123346
Q ss_pred ccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccc
Q 047492 690 RDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCI 724 (806)
Q Consensus 690 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 724 (806)
++.+.|...+.++....|++...+..+++....++
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 77788888888887777777777777776655443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.20 E-value=67 Score=37.57 Aligned_cols=28 Identities=7% Similarity=-0.019 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 047492 413 KTLSILADALCRDG--KFEQMKDLVIFALE 440 (806)
Q Consensus 413 ~~~~~ll~~~~~~g--~~~~a~~~~~~~~~ 440 (806)
.....+|.+|.+.+ .++++.+...+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34445666666665 45555555555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.43 Score=28.90 Aligned_cols=26 Identities=4% Similarity=-0.011 Sum_probs=13.0
Q ss_pred hccCcchhhHHHHHHhhhccccchhh
Q 047492 704 INEQSKISLLGQLIGVFSGCIKVSQD 729 (806)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~g~~~~A 729 (806)
+..|.+...|+.+...|...|+.++|
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555555555444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.47 E-value=1.5 Score=26.94 Aligned_cols=25 Identities=12% Similarity=-0.079 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMR 633 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~ 633 (806)
|..|...|.+.|++++|+.+|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666633
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.08 E-value=17 Score=35.22 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 047492 323 LMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 323 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
.++++.++..=++-|+-||.++++.+|+.+.+.+++.+|.++.-.|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555544444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.56 E-value=7.6 Score=34.97 Aligned_cols=98 Identities=6% Similarity=-0.097 Sum_probs=64.1
Q ss_pred hHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047492 554 IYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMR 633 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 633 (806)
.+..+.+.|.+.|+.++|.+.|.++.+....+.... ..+-.+|..+...+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~i-----------------d~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKI-----------------DMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 477788889999999999999999887655544432 136678888888999998888877766
Q ss_pred hC---CCCCCHHHHHHHHHH--HHcCCChhHHHHHHHHHH
Q 047492 634 HN---GMYPSMECYEELIKL--LCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 634 ~~---g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 668 (806)
.. |-.++...--....+ +...+++.+|-+.|-...
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 52 222222211111111 234677777777665553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.12 E-value=71 Score=35.85 Aligned_cols=195 Identities=8% Similarity=0.039 Sum_probs=100.9
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCC--ChhhHHHHHHHHH-HcCChHHHHHHHHHHHhCCCCCCHH---
Q 047492 306 EVFRFNFLVSRLLKENRLMEVFDLFMDMK-EGQISP--DGVTMNTVLCFFC-KAGMVDVAIELYKSRSEFGLSPNGI--- 378 (806)
Q Consensus 306 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~~--~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~--- 378 (806)
+...|..+|. .|++.++-+. +..+.| +..++--+...+. ...+++.|+..+.+....--.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445555554 3455555555 333333 2344455555554 5677888888887654321112221
Q ss_pred --HHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHH
Q 047492 379 --VYNYLINSLCGDGSTHEAYEVLKNSIDH----GLFPGKKTLSIL-ADALCRDGKFEQMKDLVIFALERN---IKLRDV 448 (806)
Q Consensus 379 --~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ 448 (806)
....++..+.+.+... |...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234556666666555 77777776542 222233334433 222223368888888887765532 234444
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHhhcCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 047492 449 TYDKFISALC--KANKVEVGYLIHSELSRMNK---------VASENTYIQLIHGFN--KSNRADIAARLLVEMEE 510 (806)
Q Consensus 449 ~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~ 510 (806)
++..++.+.. ..+..+++.+..+.+..... .|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444544443 34555666666655532111 224455666666544 46776666666665543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.97 E-value=16 Score=32.88 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047492 238 IGIVVDALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (806)
+..+.+.|++.|+.+.|.+.|.++.+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~ 64 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARD 64 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 34444444444444444444444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.79 E-value=0.89 Score=27.51 Aligned_cols=28 Identities=14% Similarity=-0.008 Sum_probs=13.2
Q ss_pred HHhcCCCCccchHHHHHHhhccCCHHHH
Q 047492 192 ISMRGFENDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 192 ~~~~~~~~~~~~~~li~~~~~~g~~~~a 219 (806)
..+..|.+..+|+.+...|...|++++|
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3333444444555555555555554444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.79 E-value=44 Score=33.23 Aligned_cols=165 Identities=15% Similarity=0.076 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhh
Q 047492 273 AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEV---FRFNFLVSRLLKENRLMEVFDLFMDMKEGQI-----SPDGVT 344 (806)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~~~~~~ 344 (806)
.|..+.+++-+.-++.+++.+-+.-....|..|.. ...-++-+++...+.++++++.|+...+--. .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 34444555555555555555555544444444421 1122334555556666777776665543211 112345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh----CCCCCCHHHHHH-----HHHHHHcCCChhHHHHHHHHHH----hCCCCCC
Q 047492 345 MNTVLCFFCKAGMVDVAIELYKSRSE----FGLSPNGIVYNY-----LINSLCGDGSTHEAYEVLKNSI----DHGLFPG 411 (806)
Q Consensus 345 ~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~----~~~~~p~ 411 (806)
+..|-..|.+..|+++|.-+.....+ .++..-..-|.. |.-++-..|...+|.+.-++.. +.|-.+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66666666666777666555444322 222111112222 2234445555555555554433 2332211
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHH
Q 047492 412 -KKTLSILADALCRDGKFEQMKDLVIF 437 (806)
Q Consensus 412 -~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (806)
......+.+.|...|+.+.|..-++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 11223344555556666665555544
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=84.57 E-value=37 Score=37.58 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047492 397 YEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSE 472 (806)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 472 (806)
...++.+..+-...+......++..|.+.|-.+.+.++.+.+-..-+ ...-|..-+..+.++|+...+..+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33333333332333455556666666666666666666665544321 122344455555566665554444433
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.07 E-value=42 Score=32.36 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+++.....|..+|.+.+|.++.+.....++. +...|-.++..+...|+--.+.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455667888999999999999888877655 777888999999999998888888777754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.06 E-value=48 Score=33.02 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRM-NKVA---SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIR 525 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 525 (806)
|..+.+++-+..++.+++.+-...... +..| -.....++..++...+.++++++.|+...+--...
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~---------- 155 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN---------- 155 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc----------
Confidence 344445555555555555544433221 1111 11122345566666677788888777665411100
Q ss_pred HHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHH----CCCccCcchhHHHHHHHHhhh
Q 047492 526 CLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQR----SGLVPQLGSNILMLQSYLKRK 601 (806)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~~~~~~~~~~ 601 (806)
........+|..+...|...+++++|.-+..+..+ .++.--..-|..+.
T Consensus 156 --------------------~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~------- 208 (518)
T KOG1941|consen 156 --------------------DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS------- 208 (518)
T ss_pred --------------------CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH-------
Confidence 01122345678888888888899888776655442 22221111111111
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 602 NGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH----NGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 602 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
...|.-++...|....|.+.-++..+ .|-++ -..+...+.+.|-..|+.|.|..-++...
T Consensus 209 -------lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 209 -------LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred -------HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 33566677788888888887776554 45333 23345667778888999998887777654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.82 E-value=39 Score=31.77 Aligned_cols=201 Identities=18% Similarity=0.112 Sum_probs=105.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 047492 308 FRFNFLVSRLLKENRLMEVFDLFMDMKEG-QISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN- 385 (806)
Q Consensus 308 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 385 (806)
..+......+...+++..+...+...... ........+......+...+....+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444455555556666555555554431 122334444445555555556666666666655432222 111111222
Q ss_pred HHHcCCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 386 SLCGDGSTHEAYEVLKNSIDHGL--FPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKV 463 (806)
Q Consensus 386 ~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 463 (806)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56666777777777776644211 1122233333333555667777777777666553111355666666667777777
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 464 EVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+.+...+......... ....+..+...+...+..+.+...+.+...
T Consensus 219 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777766654432 233344444444455667777777776665
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.15 E-value=9.3 Score=29.99 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=38.9
Q ss_pred HHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 047492 114 LMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA 175 (806)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 175 (806)
.+.+-+..+......|++.+..+.+.+|.|.+++..|+++|+..+.. +.+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 45566777777777888888888888888888888888888887644 12222266666643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=82.80 E-value=60 Score=33.26 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047492 384 INSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALE 440 (806)
Q Consensus 384 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (806)
..+.-+.|+++...++....... .++...+..+... ..++.+++...++.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45566677777644444443322 1233334333333 56666666666665543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.35 E-value=2.4 Score=25.41 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 366777777777888888877777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.94 E-value=55 Score=32.20 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=12.0
Q ss_pred ccchHHHHHHhhccCCH----HHHHHHHHHh
Q 047492 200 DVTRTIMLKCLCKQKKI----DEAVEYFQQL 226 (806)
Q Consensus 200 ~~~~~~li~~~~~~g~~----~~a~~~~~~~ 226 (806)
...-...+.+++..|+. .++...+..+
T Consensus 68 ~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 68 PIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 33444444455555542 2344444444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.62 E-value=10 Score=29.36 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=40.3
Q ss_pred hHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc-CCCCChhhHHHHHHH
Q 047492 113 PLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ-GMDLDDYAYHVLLNA 175 (806)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~ 175 (806)
-.+.+-+..+......|++.+..+.+++|.+.+++..|+++|+..+.. |. +...|..+++-
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 345556666666677777888888888888888888888888877632 21 33356555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.62 E-value=1 Score=39.05 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=36.2
Q ss_pred hhccccHHHHHHHHHhhhhc-cCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH
Q 047492 686 ALKTRDLYEAWIRLRGMLIN-EQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA 763 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A 763 (806)
+.+.+.......+++..... ...+....+.++..|++.++.++.++.++ ..+..-...++..|.+ |.+++|
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTSHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcchHHHH
Confidence 33444444444455554422 23334455556666665555444444443 1122333444555555 555555
Q ss_pred HHHHHHHH
Q 047492 764 CELFNRMR 771 (806)
Q Consensus 764 ~~~~~~m~ 771 (806)
..++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 55555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.52 E-value=47 Score=31.14 Aligned_cols=204 Identities=19% Similarity=0.112 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-
Q 047492 272 KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLC- 350 (806)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~- 350 (806)
..+......+...+++..+...+...............+......+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 334444444555555555555544443210111223333344444445555555555555555432222 111111112
Q ss_pred HHHHcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 351 FFCKAGMVDVAIELYKSRSEFGL--SPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKF 428 (806)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 428 (806)
.+...|+++.|...+........ ......+......+...++.+.+...+.+............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45566666666666666543110 0122233333333455666666666666666542211245555666666666667
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 047492 429 EQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 477 (806)
+.+...+......... ....+..+...+...+..+.+...+.......
T Consensus 219 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 219 EEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777666554311 23333333344445556677776666665543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.37 E-value=24 Score=32.04 Aligned_cols=71 Identities=7% Similarity=0.066 Sum_probs=43.5
Q ss_pred HHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc---CCCCChhhHHHHHHHHHhcCCcchHH
Q 047492 115 MVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ---GMDLDDYAYHVLLNALVEQGCFDAVA 186 (806)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~ 186 (806)
|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|+..+.+|...+.+.|+++.|-
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3444444444444455555555555554 56677777777776543 23566777777777777777776653
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.33 E-value=99 Score=34.74 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=73.0
Q ss_pred hhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 047492 81 KFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
++..++.+.++.+.....-...+..+++.+++..+.++... .+.+...-.....+....|+.++|......+-..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 56667777787777777777888888888888877663321 2456666677788888899988888888888766
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchH
Q 047492 161 GMDLDDYAYHVLLNALVEQGCFDAV 185 (806)
Q Consensus 161 ~~~p~~~~~~~ll~~~~~~~~~~~a 185 (806)
|. ..+..++.++..+.+.|.....
T Consensus 159 g~-~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 159 GK-SLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred CC-CCChHHHHHHHHHHHcCCCCHH
Confidence 53 3567888899888887766543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.04 E-value=4 Score=24.42 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 484 TYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 484 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=80.40 E-value=39 Score=29.50 Aligned_cols=53 Identities=13% Similarity=-0.085 Sum_probs=27.1
Q ss_pred HhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 047492 107 HCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
.+.++.+.+..++.-++.-.+ .....-..-...+.++|+|.+|+.+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRP-EFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345566666666666655311 11112122233455666677777777766544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.31 E-value=54 Score=31.06 Aligned_cols=58 Identities=10% Similarity=0.005 Sum_probs=31.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhc------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 452 KFISALCKANKVEVGYLIHSELSRM------------NKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 452 ~ll~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.|-..|...|.+.+..++++++... |.. -...|..=|..|....+-.+...++++...
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ-LLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch-hhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 3444555555555555555554321 111 234566666777766666666666666543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 2e-16
Identities = 87/644 (13%), Positives = 189/644 (29%), Gaps = 150/644 (23%)
Query: 91 HFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVR-----------FNDTLVM 139
H HH F + F + + + V+ + ++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILS---VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 140 GYALAGKPDIALHLFGKMRFQGM--------DLDDYAYHVLLNALVEQGCFDAVAVVSKQ 191
A++G L LF + + ++ Y L++ + + +
Sbjct: 58 KDAVSG----TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMY 112
Query: 192 ISMRG-FENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRE-CVSGFMIGI----VVDAL 245
I R ND + + + + + +L + + G ++G V +
Sbjct: 113 IEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDG-VLGSGKTWVALDV 170
Query: 246 CKNSRFEQAG-------KLLEDFKDRDDVVKLEKAYDVWLRNLV----RAGRLDLALEFL 294
C + + + L + L+K N + + L + +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 295 KS-----------KNSL----EGYVPEVFR-FNFLVSRLLKENRLMEVFDLFMDMKEGQI 338
++ +N L + + FN ++L R +V D I
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHI 289
Query: 339 S----PDGVTMNTVLCFFCKAGMVDVAI-ELYKSRSEFGLSPNGIVYNYLINSLCG---- 389
S +T + V K +D +L R +P S+
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKY--LDCRPQDL--PREVLTTNP-------RRLSIIAESIR 338
Query: 390 ------DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNI 443
D H + L I + +L++L A R + L +F +I
Sbjct: 339 DGLATWDNWKHVNCDKLTTII-------ESSLNVLEPAEYR----KMFDRLSVFPPSAHI 387
Query: 444 KLRDVTYDKFISALCKANKVEVGYLIHSELSR---MNKVASENTYIQLIHGFNKSNRADI 500
+S + ++ ++L + + K E+T I I
Sbjct: 388 PT------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IP--------SI 431
Query: 501 AARLLVEMEENGHKPTRALHRAVI------RCLCNMETPAK-------QFL--QLLNMQL 545
L V++E ALHR+++ + + + + L N++
Sbjct: 432 YLELKVKLENE-----YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 546 SHQETNF-QIY-NF-FIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKN 602
+ T F ++ +F F++ K + ++ L + + Y+ +
Sbjct: 487 PERMTLFRMVFLDFRFLEQ----K---IRHDSTAWNASGSILNTL-QQLKFYKPYICDND 538
Query: 603 GIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEE 646
+L N ++ L K + + + +R M +EE
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 8e-14
Identities = 95/583 (16%), Positives = 171/583 (29%), Gaps = 161/583 (27%)
Query: 251 FEQAGKLLEDFKDRDDVVK--LEKA-YDVWLRNLVRAGRLDLALEFLKSK--NSLEGYVP 305
FE A D KD D+ K L K D + + L SK ++ +V
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 306 EVFR--FNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIE 363
EV R + FL+S + E R P +T + V +
Sbjct: 85 EVLRINYKFLMSPIKTEQR----------------QPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 364 LYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLF-PGKKTLSILADAL 422
SR + Y L +L ++ G+ GK + +A +
Sbjct: 129 YNVSRLQ--------PYLKLRQALLEL--RPAKNVLI-----DGVLGSGK---TWVALDV 170
Query: 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASE 482
C K + D IF +++ + +S + + + +
Sbjct: 171 CLSYKVQCKMDFKIF---------------WLN---------LKN-CNSPETVLEML--Q 203
Query: 483 NTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRAL-HRAVIRCL------CNMETPAK 535
Q+ N ++R+D ++ + + + + R L + CL N +
Sbjct: 204 KLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WN 260
Query: 536 QF-LQ---LLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNI 591
F L LL T A L L P ++
Sbjct: 261 AFNLSCKILL--------TTRFKQVTDFLSAATTTHISLD------HHSMTLTPDEVKSL 306
Query: 592 LMLQSYLK-RKNGIPR--KLYNTLIVGLCKAMKANLA--WGFMREMRHNGMYPSME---- 642
L+ YL R +PR N + + + W + + + + +E
Sbjct: 307 LL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 643 ---------CYEEL----------IKLLC---STKNYDMVVGVMNHLEGHG---RQVTSF 677
++ L LL V+ V+N L + +Q
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 678 IGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMI 737
T+ + +Y + L+ L NE +L ++ ++ I + D + L
Sbjct: 425 ---TISIP-----SIY---LELKVKLENEY---ALHRSIVDHYN--IPKTFDSDDLIPP- 467
Query: 738 EQCFPLDTYTYNILLRRLSVSEIDHACELFNR-------MRRK 773
LD Y Y+ + L E LF + +K
Sbjct: 468 ----YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 1e-06
Identities = 20/175 (11%), Positives = 49/175 (28%), Gaps = 1/175 (0%)
Query: 286 RLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTM 345
++ A S+ L G + F + + + ++ +
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY 168
Query: 346 NTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYE-VLKNSI 404
N V+ + + G + + + GL+P+ + Y + + E L+
Sbjct: 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
Query: 405 DHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK 459
GL ++L R + + + V K + +
Sbjct: 229 QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.4 bits (116), Expect = 4e-06
Identities = 25/266 (9%), Positives = 70/266 (26%), Gaps = 12/266 (4%)
Query: 439 LERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM---NKVASENTYIQLIHGFNKS 495
+ + + F +++ + + + K+ + + Y ++ G+ +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 496 NRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLN-MQLSHQETNFQI 554
+L +++ G P + A ++C+ + A + L M +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 555 YNFFIDGAGHVKRPDLARAVYELMQRSGLVP-QLGSNILMLQSYLKRKNGIPRKLYNTLI 613
+ V +P + ++ L+ Y K KL+
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH---- 294
Query: 614 VGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQ 673
+ M + + + + + + E +
Sbjct: 295 ---LPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCR 351
Query: 674 VTSFIGNTLLLHALKTRDLYEAWIRL 699
N L + R ++ L
Sbjct: 352 ALRETKNRLEREVYEGRFSLYPFLCL 377
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.5 bits (98), Expect = 7e-04
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 12/113 (10%)
Query: 702 MLINEQSKISLLGQLIGVFSGCIKVSQD------IEGLQKMIEQCFPLDTYTYNILLRRL 755
++ +L+ F C+ Q + ++ L YN ++
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 756 S-VSEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCL-RTDEAERRLEEMF 806
+ + ++ G PD ++ C+ R D+ +E
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSY----AAALQCMGRQDQDAGTIERCL 224
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 806 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.45 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.43 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.42 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.42 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.41 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.4 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.39 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.39 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.37 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.36 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.36 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.35 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.3 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.3 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.29 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.28 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.27 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.27 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.19 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.18 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.13 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.11 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.08 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.05 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.02 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.01 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.97 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.96 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.95 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.91 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.83 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.82 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.82 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.78 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.77 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.7 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.67 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.65 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.65 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.64 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.62 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.6 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.59 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.57 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.57 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.56 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.56 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.55 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.53 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.49 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.47 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.45 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.43 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.43 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.41 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.35 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.35 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.35 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.34 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.31 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.28 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.28 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.28 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.27 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.24 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.24 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.24 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.23 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.2 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.2 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.19 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.19 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.17 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.16 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.15 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.15 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.13 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.12 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.1 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.08 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.0 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.0 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.98 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.98 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.95 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.95 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.94 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.94 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.94 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.92 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.9 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.87 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.86 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.86 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.86 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.86 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.83 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.83 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.8 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.79 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.77 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.76 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.75 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.72 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.69 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.68 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.66 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.65 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.63 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.62 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.62 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.6 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.6 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.57 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.53 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.52 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.39 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.35 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.29 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.29 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.24 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.2 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.19 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.18 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.16 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.16 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.14 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.07 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.97 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.95 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.91 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.85 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.77 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.38 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.04 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.86 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.85 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.74 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.72 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.58 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.58 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.48 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.44 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.25 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.07 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.06 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.03 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.98 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.91 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.86 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.4 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.08 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.06 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.7 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.45 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.64 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.48 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.0 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.05 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.88 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.26 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.73 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.5 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.88 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.56 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.47 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.19 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.66 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.13 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.56 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.04 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.25 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=351.86 Aligned_cols=521 Identities=12% Similarity=-0.008 Sum_probs=354.6
Q ss_pred HhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHH
Q 047492 107 HCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVA 186 (806)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 186 (806)
.+.+.+..+...+..+ ..++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 3444444444444433 2357777888888888888888888888888754 567777777888888888888888
Q ss_pred HHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 047492 187 VVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDD 266 (806)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 266 (806)
.+|+.+... .++..+++.++.+|.+.|++++|.++|+++..... . ..++.+. .....+
T Consensus 138 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-----~~~~~~~------------~~~~~~ 195 (597)
T 2xpi_A 138 CLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK----D-----EKNANKL------------LMQDGG 195 (597)
T ss_dssp HHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------------------------------CCCSS
T ss_pred HHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccc----c-----ccccccc------------cccccc
Confidence 887776533 34555777777777777777777777764221110 0 0000000 000114
Q ss_pred CCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-cccHHHHHHHHHhcCCHHH--HHHH-HHHHHhCCCCCCh
Q 047492 267 VVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-VFRFNFLVSRLLKENRLME--VFDL-FMDMKEGQISPDG 342 (806)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~--a~~~-~~~m~~~g~~~~~ 342 (806)
..++..+|+.++.+|.+.|++++|++.|+++.+. .|+ ...+..+...+...+..+. +..+ +..+...+..++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 4556677777888888888888888888777652 232 2333333333322222211 1112 4445554444556
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 422 (806)
.+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+.. +..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence 66777788888889999999999888764 578889999999999999999999999998876543 677888889999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
.+.|++++|.++++.+.+.. +.+..+++.++..|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999888654 567788888999999999999999999988876554 7788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCC
Q 047492 503 RLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSG 582 (806)
Q Consensus 503 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 582 (806)
++|+++.+. .| .+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 428 ~~~~~~~~~--~~----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 470 (597)
T 2xpi_A 428 SAYTTAARL--FQ----------------------------------GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL- 470 (597)
T ss_dssp HHHHHHHHT--TT----------------------------------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHh--Cc----------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999988763 22 25667888888888889999999999998854
Q ss_pred CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCC
Q 047492 583 LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN----GMYPS--MECYEELIKLLCSTKN 656 (806)
Q Consensus 583 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~ 656 (806)
.|+.. .+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+
T Consensus 471 -~~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 471 -FQYDP------------------LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp -CCCCH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred -CCCCh------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 23322 24888999999999999999999988875 66777 6788888899999999
Q ss_pred hhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 657 YDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 657 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
+++|.+.++++.+.+ +.+..++..+...+.+.|+.++|.+.++++....|.+...+..+..+|
T Consensus 532 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 532 YDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999988887664 223444444444444445554444444444444444444444444433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=345.52 Aligned_cols=525 Identities=12% Similarity=-0.017 Sum_probs=380.7
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHH
Q 047492 141 YALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAV 220 (806)
Q Consensus 141 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 220 (806)
+.+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++.... |+..++..++.+|.+.|++++|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC-CCchHHHHHHHHHHHcCcHHHHH
Confidence 556677777777776654 3477888999999999999999999988887544 35577788888888888888888
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhc
Q 047492 221 EYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSL 300 (806)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 300 (806)
++|+.+... +++..+++.++.+|.+.|++++|.++|+++... . .+ ..++.+. ....
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~--------~~~~~~~------------~~~~ 193 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF-R-KD--------EKNANKL------------LMQD 193 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT-C-------------------------------CCC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc-c-cc--------ccccccc------------cccc
Confidence 888887543 467778888888888888888888888753322 1 00 0011111 1112
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH--HHHH-HHHHHhCCCCCCH
Q 047492 301 EGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV--AIEL-YKSRSEFGLSPNG 377 (806)
Q Consensus 301 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~--a~~~-~~~~~~~~~~~~~ 377 (806)
.+..++..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+..+...+...+..+. +..+ +..+...+..+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 45566788999999999999999999999999988542 234455555444433322222 1122 4455554444556
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047492 378 IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISAL 457 (806)
Q Consensus 378 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 457 (806)
.+|+.++..|.+.|++++|.++|+++.+. .++..++..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 67788888999999999999999998865 4789999999999999999999999999998876 45777899999999
Q ss_pred HhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHH
Q 047492 458 CKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQF 537 (806)
Q Consensus 458 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 537 (806)
.+.|++++|..+++.+.+..+. +..+|+.++..|.+.|++++|.++|+++.+. .|
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---------------------- 404 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DP---------------------- 404 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----------------------
T ss_pred HHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CC----------------------
Confidence 9999999999999999876544 7888999999999999999999999998762 22
Q ss_pred HHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHH
Q 047492 538 LQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLC 617 (806)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 617 (806)
.+..+|+.++.+|.+.|++++|.++|+++.+.+ |+.. .+|..++.+|.
T Consensus 405 ------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~------------------~~~~~l~~~~~ 452 (597)
T 2xpi_A 405 ------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTH------------------LPYLFLGMQHM 452 (597)
T ss_dssp ------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCS------------------HHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccch------------------HHHHHHHHHHH
Confidence 256678888899999999999999999998653 3222 24889999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCCchhHHHHHHHhhccccHH
Q 047492 618 KAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH----GRQVTSFIGNTLLLHALKTRDLY 693 (806)
Q Consensus 618 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~ 693 (806)
+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++++++.+. +..|+.
T Consensus 453 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~----------------- 514 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP----------------- 514 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG-----------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh-----------------
Confidence 9999999999999998753 336888999999999999999999999988764 222220
Q ss_pred HHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 047492 694 EAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR 772 (806)
Q Consensus 694 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~ 772 (806)
...++..++.+|.+.|++++|++.++++.+.+ +.+..+|..+..+|.. |++++|.+.|+++.+
T Consensus 515 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 515 ---------------WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp ---------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 14566777777777788888888888877763 5577788888888888 888888888888876
Q ss_pred cCCCCChhhHHHHHhhhh
Q 047492 773 KGYEPDQWTFDILKCGLY 790 (806)
Q Consensus 773 ~g~~p~~~~~~~l~~~~~ 790 (806)
... -+...+..+..+|.
T Consensus 579 ~~p-~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 579 ISP-NEIMASDLLKRALE 595 (597)
T ss_dssp HCT-TCHHHHHHHHHTTC
T ss_pred cCC-CChHHHHHHHHHHh
Confidence 532 24455555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=261.60 Aligned_cols=203 Identities=16% Similarity=0.186 Sum_probs=121.9
Q ss_pred HHHHHHHHhCCCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------hhHH
Q 047492 327 FDLFMDMKEGQISPDG-VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS---------THEA 396 (806)
Q Consensus 327 ~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~a 396 (806)
..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3344444444443322 23555556666666666666666666655666666666666665554433 4556
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 047492 397 YEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM 476 (806)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 476 (806)
.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 047492 477 NKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCN 529 (806)
Q Consensus 477 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 529 (806)
|+.||..+|+.||.+|++.|++++|.++|++|++.|..|+..||+.++..|+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=262.29 Aligned_cols=186 Identities=12% Similarity=0.199 Sum_probs=115.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC---------hHHHHHHHHHHHhCCCCCCHHH
Q 047492 309 RFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGM---------VDVAIELYKSRSEFGLSPNGIV 379 (806)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~ 379 (806)
.++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555556666666666666666666666666666666666666554433 4556666666666666666666
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047492 380 YNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK 459 (806)
Q Consensus 380 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 459 (806)
|++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 047492 460 ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK 494 (806)
Q Consensus 460 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 494 (806)
.|++++|.+++++|.+.+..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-24 Score=223.21 Aligned_cols=363 Identities=15% Similarity=0.067 Sum_probs=220.7
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 047492 177 VEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGK 256 (806)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (806)
.+.|++++|...++.+.+..+.+...+..+...+...|++++|...++...+..+ .+..+|..+...|.+.|++++|++
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHH
Confidence 3444444444444444444443444444444444455555555555544444332 334455555555555555555555
Q ss_pred HHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047492 257 LLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKE 335 (806)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (806)
.|+++... .+.+...|..+..++.+.|++++|.+.|+++... .|+ ...+..+...+...|++++|.+.|+++.+
T Consensus 89 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 89 HYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555432 1222334555555555555555555555555431 233 33444455566666777777777766665
Q ss_pred CCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 047492 336 GQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTL 415 (806)
Q Consensus 336 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 415 (806)
.. +.+..++..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..+.... +..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHH
Confidence 42 1245666667777777777777777777766643 234556667777777777777777777776654322 45667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 047492 416 SILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKS 495 (806)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 495 (806)
..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|++++|...++++.+..+. +..+|..+...+.+.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHc
Confidence 777777777777777777777777654 345567777777777778888888777777766543 677777777888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHH
Q 047492 496 NRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVY 575 (806)
Q Consensus 496 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 575 (806)
|++++|...++++.+. .| .+..++..+...|.+.|++++|...|
T Consensus 319 g~~~~A~~~~~~al~~--~p----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEV--FP----------------------------------EFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp TCHHHHHHHHHHHTTS--CT----------------------------------TCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CC----------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888777652 22 23455666777777778888888888
Q ss_pred HHHHHCCCccCcc
Q 047492 576 ELMQRSGLVPQLG 588 (806)
Q Consensus 576 ~~m~~~~~~p~~~ 588 (806)
+++.+ ..|+..
T Consensus 363 ~~a~~--~~p~~~ 373 (388)
T 1w3b_A 363 KEAIR--ISPTFA 373 (388)
T ss_dssp HHHHT--TCTTCH
T ss_pred HHHHh--hCCCCH
Confidence 88774 455543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-24 Score=223.51 Aligned_cols=359 Identities=14% Similarity=0.016 Sum_probs=173.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 047492 316 RLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHE 395 (806)
Q Consensus 316 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 395 (806)
.+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3444555555555555554432 1123333444444555555555555555544432 3344555555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047492 396 AYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 475 (806)
|.+.|+++.+... .+..+|..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555554321 133345555555555555555555555555543 22333444555555555666666665555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhH
Q 047492 476 MNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIY 555 (806)
Q Consensus 476 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (806)
..+. +..+|..+...+...|++++|...|+++.+. .|+ +...|
T Consensus 164 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~ 206 (388)
T 1w3b_A 164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN----------------------------------FLDAY 206 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC----------------------------------cHHHH
Confidence 4333 4555555556666666666666666555541 121 23334
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047492 556 NFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN 635 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 635 (806)
..+...+...|++++|...|++..+. .|+... ++..+...|...|++++|...|+++.+.
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSL--SPNHAV------------------VHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555555555555555532 233221 2555555555566666666666555552
Q ss_pred CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHH
Q 047492 636 GMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLG 714 (806)
Q Consensus 636 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 714 (806)
.| +..+|..+..++.+.|++++|.+.++++.+.. +.+...++.+...+.+.|+.++|...++++....|.+..++.
T Consensus 267 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 267 --QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp --CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 22 34445555555555555555555555554432 112223333333333333333333333333333333333344
Q ss_pred HHHHhhhccccchhhHHHHHHHHH
Q 047492 715 QLIGVFSGCIKVSQDIEGLQKMIE 738 (806)
Q Consensus 715 ~l~~~~~~~g~~~~A~~~~~~~~~ 738 (806)
.++.+|.+.|++++|+..++++.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-21 Score=210.78 Aligned_cols=451 Identities=12% Similarity=-0.048 Sum_probs=318.8
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+......+.+.|++++|+..|+++.+. .|+..+|..+..++...|++++|...++.+.+.++.+..++..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 455666777888889999999999998877 378888888888899999999999999998888877778888889999
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHH---cCCH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVR---AGRL 287 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~ 287 (806)
...|++++|...|+.+.+.+. ++......++..+.+......+.+.+..+... ...|+...+..-...... ....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-TATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999998888765 34444445555554444444444444333222 111111111110000000 1111
Q ss_pred HHHHHHHHhhhhcCCC-----CCCcccHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC--------CChhhHH
Q 047492 288 DLALEFLKSKNSLEGY-----VPEVFRFNFLVSRLLK---ENRLMEVFDLFMDMKE-----GQIS--------PDGVTMN 346 (806)
Q Consensus 288 ~~a~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~~--------~~~~~~~ 346 (806)
..+...+......... ..+...+......+.. .|++++|..+|+++.+ .... .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111111110000 1112333333333443 8999999999999887 3111 2355777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDG 426 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 426 (806)
.+...+...|++++|...|+.+.+.. |+...+..+...+...|++++|.+.++++.+.... +...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 88889999999999999999988754 44888899999999999999999999999876533 6778889999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047492 427 KFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLV 506 (806)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 506 (806)
++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+..+. +...|..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998876 456778889999999999999999999999887654 67789999999999999999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhc---CCChHHHHHHHHHHHHCCC
Q 047492 507 EMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGH---VKRPDLARAVYELMQRSGL 583 (806)
Q Consensus 507 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~ 583 (806)
++.+. .|+.. ........+..+...+.. .|++++|...|+++.+.
T Consensus 397 ~a~~~--~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-- 444 (514)
T 2gw1_A 397 LAIEL--ENKLD----------------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-- 444 (514)
T ss_dssp HHHHH--HHTSS----------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--
T ss_pred HHHHh--hhccc----------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--
Confidence 88762 11100 000113467888888888 89999999999998864
Q ss_pred ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047492 584 VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSME 642 (806)
Q Consensus 584 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 642 (806)
.|+... ++..+...|.+.|++++|...|++..+ +.|+..
T Consensus 445 ~~~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 445 DPRSEQ------------------AKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp CTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred CcccHH------------------HHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 344332 477888999999999999999999988 455543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-20 Score=203.16 Aligned_cols=256 Identities=11% Similarity=-0.031 Sum_probs=141.0
Q ss_pred CCChhHHHHHHHHHHh-----CCCCC--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047492 390 DGSTHEAYEVLKNSID-----HGLFP--------GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISA 456 (806)
Q Consensus 390 ~g~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 456 (806)
.|++++|..+|+++.+ ....| +..++..+...+...|++++|...++.+.+.... ...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 6677777777777665 21111 2334555556666666666666666666655422 5556666666
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHH
Q 047492 457 LCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQ 536 (806)
Q Consensus 457 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 536 (806)
+...|++++|...++.+.+..+. +...|..+...+...|++++|...+++..+. .|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~--------------------- 335 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DP--------------------- 335 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CS---------------------
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Ch---------------------
Confidence 66666666666666666554433 4555666666666666666666666665542 11
Q ss_pred HHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH
Q 047492 537 FLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL 616 (806)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 616 (806)
.+...+..+...|...|++++|...|+++.+. .|+... +|..+...|
T Consensus 336 -------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------------------~~~~la~~~ 382 (514)
T 2gw1_A 336 -------------ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPE------------------VPNFFAEIL 382 (514)
T ss_dssp -------------SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSH------------------HHHHHHHHH
T ss_pred -------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHH------------------HHHHHHHHH
Confidence 12334555555556666666666666665532 222111 255555666
Q ss_pred HhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhc
Q 047492 617 CKAMKANLAWGFMREMRHNGMY-PS----MECYEELIKLLCS---TKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALK 688 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 688 (806)
...|++++|...++++.+.... ++ ...+..+..++.. .|++++|...++.+.+.
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------------------ 444 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------------------ 444 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------------------
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------------------
Confidence 6666666666666655542100 11 2244555555555 55555555555555443
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.|.+..++..++..|...|++++|...++++.+.
T Consensus 445 -----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 445 -----------------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3344444555556666666666666666666664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-19 Score=194.58 Aligned_cols=338 Identities=10% Similarity=-0.023 Sum_probs=226.4
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384 (806)
Q Consensus 305 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 384 (806)
.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..+|...|++++|...|+.+.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345666777777777777777777777776642 2356677777777777777777777777776643 33466677777
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047492 385 NSLCGDGSTHEAYEVLKNSIDHGLFPGK----KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA 460 (806)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 460 (806)
..|.+.|++++|.+.|+++.+.. |+. ..+..+...+.. ..+..+...+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 77777777777777777776643 332 344444333111 0122234456667
Q ss_pred CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHH
Q 047492 461 NKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQL 540 (806)
Q Consensus 461 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 540 (806)
|++++|...++.+.+..+. +...+..+...|.+.|++++|+..|+++.+. .
T Consensus 157 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-------------------------- 207 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKL--K-------------------------- 207 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--H--------------------------
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C--------------------------
Confidence 7777777777777665544 6667777777777777777777777777642 1
Q ss_pred HHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC
Q 047492 541 LNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM 620 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 620 (806)
+.++.++..+...|...|++++|...|+++.+. .|+.......+.... ....+..+...|.+.|
T Consensus 208 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g 271 (450)
T 2y4t_A 208 --------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK------KLNKLIESAEELIRDG 271 (450)
T ss_dssp --------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH------HHHHHHHHHHHHHHHT
T ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH------HHHHHHHHHHHHHHcC
Confidence 224556677777777778888888888777743 454443111100000 0001233478899999
Q ss_pred ChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHH
Q 047492 621 KANLAWGFMREMRHNGMYPS-----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEA 695 (806)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 695 (806)
++++|...|+++.+ ..|+ ..+|..+..++.+.|++++|...++.+.+.. +.+...+..+...+...|+.++|
T Consensus 272 ~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 272 RYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp CHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999988 3454 4477888889999999999999999987764 33456777788888888888888
Q ss_pred HHHHHhhhhccCcchhhHHHHH
Q 047492 696 WIRLRGMLINEQSKISLLGQLI 717 (806)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~ 717 (806)
...++++....|.+..++..+.
T Consensus 349 ~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 349 IQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHH
Confidence 8888888877777777776666
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-19 Score=195.11 Aligned_cols=315 Identities=14% Similarity=0.051 Sum_probs=214.4
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHH
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 207 (806)
+.+...+..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+.+.+.++.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4566777777777888888888888888777652 235667777777788888888888888888777766777777888
Q ss_pred HHhhccCCHHHHHHHHHHhHhCCCCCCH---HhHHHH------------HHHHHhcCCHHHHHHHHHHhhhCCCCCcchh
Q 047492 208 KCLCKQKKIDEAVEYFQQLVSGRECVSG---FMIGIV------------VDALCKNSRFEQAGKLLEDFKDRDDVVKLEK 272 (806)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 272 (806)
.+|...|++++|.+.|+.+.+..+ .+. ..+..+ ...+.+.|++++|+..|+.+... .+.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 888888888888888888776543 222 444444 33477778888888888777654 234556
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHH---
Q 047492 273 AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD-GVTMNTV--- 348 (806)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l--- 348 (806)
.+..+...|.+.|++++|++.|+++.... +.+..++..+...+...|++++|...|+++.+. .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHH
Confidence 67777777778888888888777776421 234566777777777788888888888777754 233 3333333
Q ss_pred ---------HHHHHHcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 047492 349 ---------LCFFCKAGMVDVAIELYKSRSEFGLSPN-----GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKT 414 (806)
Q Consensus 349 ---------l~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 414 (806)
...|.+.|++++|...|+.+.+. .|+ ...|..+...+.+.|++++|...++++.+... .+...
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~ 331 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHH
Confidence 56677777777777777777663 233 34566677777777777777777777765432 25667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047492 415 LSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFI 454 (806)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 454 (806)
+..+..+|...|++++|...++.+.+.. +-+...+..+.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 7777777777777777777777776643 22344444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-19 Score=195.95 Aligned_cols=444 Identities=12% Similarity=0.034 Sum_probs=258.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...+.+.|++++|+..|+++.... +.++.+|..+..++...|++++|...++++.+..+.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3445555555555555555555555555442 124445555555555555555555555555555544445555555555
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLA 290 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (806)
...|++++|.+.|+ ........ ....+..+...+....|...++.+.... |
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~l~~~---~--------------------- 154 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDF----DGASIEPMLERNLNKQAMKVLNENLSKD---E--------------------- 154 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HHcCCHHHHHHHHH-HHhcCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhC---c---------------------
Confidence 55555555555554 22211111 1111223333333444555554443220 0
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHH--------HcCChHHH
Q 047492 291 LEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGV-TMNTVLCFFC--------KAGMVDVA 361 (806)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~--------~~g~~~~a 361 (806)
+..+........+..+....+.+.+...+..... ..+... ....+...+. ..|++++|
T Consensus 155 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 155 -----------GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp ---------------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred -----------cccccccchHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0001111112223333334444333333222111 011111 1111111111 12456677
Q ss_pred HHHHHHHHhCCCCCC--------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047492 362 IELYKSRSEFGLSPN--------GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKD 433 (806)
Q Consensus 362 ~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 433 (806)
..+|+.+.+.. |+ ..++..+...+...|++++|.+.++++.+. .|+...+..+...+...|++++|..
T Consensus 222 ~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHH
Confidence 77777766532 33 224555566677777888888888877765 3456677777777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047492 434 LVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGH 513 (806)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 513 (806)
.++.+.+.. +.+..++..+...+...|++++|...++...+..+. +...|..+...+...|++++|...++++.+.
T Consensus 298 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 373 (537)
T 3fp2_A 298 FFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK-- 373 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888777765 456677888888888888888888888888776654 5677888888888889999998888888763
Q ss_pred CCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHH
Q 047492 514 KPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILM 593 (806)
Q Consensus 514 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 593 (806)
.| .++..+..+...+...|++++|...|+++.+.. |+....
T Consensus 374 ~~----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~--- 414 (537)
T 3fp2_A 374 FP----------------------------------TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKI--- 414 (537)
T ss_dssp CT----------------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSC---
T ss_pred CC----------------------------------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccchhh---
Confidence 22 245567777888888899999999998877532 221110
Q ss_pred HHHHHhhhCCCCchhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 047492 594 LQSYLKRKNGIPRKLYNTLIVGLCKA----------MKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGV 663 (806)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~li~~~~~~----------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 663 (806)
......+..+...+... |++++|...|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 415 ---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 415 ---------HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp ---------SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 00001133445667777 99999999999998842 33577888999999999999999999
Q ss_pred HHHHHhCCCCC
Q 047492 664 MNHLEGHGRQV 674 (806)
Q Consensus 664 ~~~~~~~~~~~ 674 (806)
+++..+.....
T Consensus 485 ~~~al~~~~~~ 495 (537)
T 3fp2_A 485 FEDSAILARTM 495 (537)
T ss_dssp HHHHHHHC--C
T ss_pred HHHHHHhCCCc
Confidence 99998876443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-19 Score=196.48 Aligned_cols=448 Identities=10% Similarity=-0.018 Sum_probs=315.5
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHH
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLN 174 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 174 (806)
....+..+...+.+.|+++.|...++..... .+.+..+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4577888889999999999999999999885 35688999999999999999999999999998773 235678899999
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCC--CCHHhHHHHHHHHHhcCCHH
Q 047492 175 ALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGREC--VSGFMIGIVVDALCKNSRFE 252 (806)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 252 (806)
++...|++++|...|+ .....+... ...+..+...+....|...++.+....+. +........+..+....+.+
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFD---GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999997 433333211 12233445556668899999988764211 11111233344455555555
Q ss_pred HHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 253 QAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMD 332 (806)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 332 (806)
.+...+...... .+. +..+..++... .. .+. -......|++++|..++++
T Consensus 178 ~~~~~~~~~~~~---~~~---~~~~~~~l~~~-------------~~-----~~~------~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 178 LEVSSVNTSSNY---DTA---YALLSDALQRL-------------YS-----ATD------EGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp HHHHTSCCCCSS---CSS---HHHHHHHHHHH-------------HT-----CSH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc---ccH---HHHHHHHHHHH-------------HH-----hhh------hhhHHHHHHHHHHHHHHHH
Confidence 554433322211 111 11111111100 00 000 0011123467778888888
Q ss_pred HHhCCCCCC--------hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 333 MKEGQISPD--------GVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 333 m~~~g~~~~--------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
+.+.. |+ ..++..+...+...|++++|...|+...+. .|+...+..+...+...|++++|.+.++++.
T Consensus 228 ~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 228 LLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 77643 33 224566667788889999999999998875 4667888888899999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHH
Q 047492 405 DHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENT 484 (806)
Q Consensus 405 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 484 (806)
+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+..+. +...
T Consensus 304 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 380 (537)
T 3fp2_A 304 DLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEV 380 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHH
T ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 76533 67788899999999999999999999998875 445678889999999999999999999999887655 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhc
Q 047492 485 YIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGH 564 (806)
Q Consensus 485 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 564 (806)
+..+...+...|++++|...|+++.+.. |+.. ........+......+..
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~----------------------------~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQE----------------------------KIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCS----------------------------SCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccch----------------------------hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987631 1100 001111223334455555
Q ss_pred C----------CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 565 V----------KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 565 ~----------~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
. |++++|...|++..+. .|+... +|..+...|.+.|++++|...|++..+
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQ------------------AKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHH------------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5 9999999999999864 354432 488999999999999999999999998
Q ss_pred C
Q 047492 635 N 635 (806)
Q Consensus 635 ~ 635 (806)
.
T Consensus 491 ~ 491 (537)
T 3fp2_A 491 L 491 (537)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-15 Score=166.30 Aligned_cols=614 Identities=11% Similarity=0.088 Sum_probs=395.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHH-----------HHhHhc--cCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCC
Q 047492 96 RATFHAIFKLLHCAKLTPLMVDFL-----------ENYKKD--RYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGM 162 (806)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~l-----------~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 162 (806)
...|....+-|.+..+.+.-..++ +..... .-..++.-....+.+|...|.+.+|++++++....+-
T Consensus 937 n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s 1016 (1630)
T 1xi4_A 937 NSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS 1016 (1630)
T ss_pred chhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 345555666666666554433333 221111 1134455557788999999999999999999984321
Q ss_pred --CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHH
Q 047492 163 --DLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGI 240 (806)
Q Consensus 163 --~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (806)
.-+....+.++.+..+. +..+..+........ ...-+...+...|.+++|..+|++.. ......+.
T Consensus 1017 ~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~V 1084 (1630)
T 1xi4_A 1017 VFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQV 1084 (1630)
T ss_pred cccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHH
Confidence 12345566666666666 556666666555422 24447788889999999999999963 11222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhc
Q 047492 241 VVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKE 320 (806)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 320 (806)
++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.
T Consensus 1085 Li---e~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1085 LI---EHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTS 1147 (1630)
T ss_pred HH---HHHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHc
Confidence 33 27789999999998763 2578999999999999999999999764 4677888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 321 NRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 321 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
|++++|.+.|....+.. ++....+.+..+|++.+++++..... + .++...|..+...|...|++++|..+|
T Consensus 1148 GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y 1218 (1630)
T 1xi4_A 1148 GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLY 1218 (1630)
T ss_pred CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999877754 44444556999999999988644443 2 367777888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC
Q 047492 401 KNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA 480 (806)
Q Consensus 401 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 480 (806)
... ..|..+...+.+.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..
T Consensus 1219 ~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv 1278 (1630)
T 1xi4_A 1219 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 1278 (1630)
T ss_pred Hhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhc
Confidence 984 48999999999999999999999875 4568999999999999999999886653 223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCC--------CC
Q 047492 481 SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPT-RALHRAVIRCLCNMETPAKQFLQLLNMQLSHQE--------TN 551 (806)
Q Consensus 481 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 551 (806)
++..+..++..|.+.|.+++|+.+++.... +.+. ...|.-+...+++-.. +.+.+.++....... .+
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~p--eklmEhlk~f~~rini~k~~r~~e~ 1354 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKP--QKMREHLELFWSRVNIPKVLRAAEQ 1354 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCH--HHHHHHHHHHHHhcccchHhHHHHH
Confidence 667888999999999999999999987764 3333 2334444444444332 222222222221111 35
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMRE 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 631 (806)
...|.-+.-.|.+.|+++.|....-+-...... ...+..++ ....++..|...+.-|.... .+++.-+..
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~--~~~Fk~~i------~kv~n~elyykai~Fyl~~~--P~~lndLl~ 1424 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK--EGQFKDII------TKVANVELYYRAIQFYLEFK--PLLLNDLLM 1424 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhh--hHHHHHHh------cccccHHHHHHHHHHHHhhC--hHHHHHHHH
Confidence 667999999999999999988432111100000 00000000 01123344666666666322 233333322
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhc------
Q 047492 632 MRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLIN------ 705 (806)
Q Consensus 632 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 705 (806)
.....+. +...++.+.+.|++..+...++.+...+ +..+-..+-+.+...+|...-...++....-
T Consensus 1425 ~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~n---~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La 1496 (1630)
T 1xi4_A 1425 VLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLA 1496 (1630)
T ss_pred HhhhcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHhc---chhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHH
Confidence 2221111 2335556667777777777776665332 3334444555555555544333333222110
Q ss_pred ---cCcchhhHHHHH-HhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChh
Q 047492 706 ---EQSKISLLGQLI-GVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 706 ---~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
...+..-+..+. ..|.+.|+++.|++++++... |--.|.+... |+.+.+.+++.-.... -+..
T Consensus 1497 ~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~~a~~S~d~e~~e~ll~~F~~~---~~~E 1564 (1630)
T 1xi4_A 1497 QRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQYASESKDTELAEELLQWFLQE---EKRE 1564 (1630)
T ss_pred HHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHHHHHHcCCHHHHHHHHHHHHhc---CChh
Confidence 111111112222 344556888888887765433 5556777777 8888888887777765 3445
Q ss_pred hHHHHHhhhhccCCHHHHHHH
Q 047492 781 TFDILKCGLYNCLRTDEAERR 801 (806)
Q Consensus 781 ~~~~l~~~~~~~g~~~eA~~~ 801 (806)
+|...+..|...-+.+-++++
T Consensus 1565 ~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1565 CFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred HHHHHHHHHhccCCchHHHHH
Confidence 677777777776666666653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-14 Score=162.29 Aligned_cols=599 Identities=13% Similarity=0.100 Sum_probs=291.7
Q ss_pred CCHHHHHHHHhcccCCCCchhhhhhhhhhcc-CCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccC--CcchhHH
Q 047492 58 LTESFALQVLNYGKKTKDVLSCLKFFDWAGR-QPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRY--YHQVRFN 134 (806)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 134 (806)
-+++++..||..- +... -++.+|... .-.-..+++.....++.+...|.+..+.++++...-.+. ..+....
T Consensus 951 ~d~~lW~~vl~~~---n~~R--R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLLES---NPYR--RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhcCC---cHHH--HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 3556666666431 1111 245555321 112244555666666666666666666666666653211 1233444
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK 214 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 214 (806)
+.++....+. +..+..+..++.... + ...+...+...|.+++|..+|++.. ......+.++. ..|
T Consensus 1026 nlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~ 1090 (1630)
T 1xi4_A 1026 NLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIG 1090 (1630)
T ss_pred HHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHh
Confidence 5555444444 334444444444321 1 2234445555666666666666542 11111122221 455
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHH
Q 047492 215 KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFL 294 (806)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (806)
++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+. -|...|..++.++.+.|++++|.+++
T Consensus 1091 nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1091 NLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred hHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 566666665544 12355666666666666666666666442 23344555666666666666666666
Q ss_pred HhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 047492 295 KSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLS 374 (806)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (806)
....+. .++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1158 ~mArk~---~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------ 1221 (1630)
T 1xi4_A 1158 QMARKK---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 1221 (1630)
T ss_pred HHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------
Confidence 554431 133223334556666666655433222 1 134444555556666666666666666653
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047492 375 PNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFI 454 (806)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 454 (806)
..|..+...|++.|++++|.+.+++. -+..+|..+-.+|...|++..|...... +..+...+..++
T Consensus 1222 ---~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli 1287 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 1287 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHH
Confidence 25666666666666666666666554 2445555555566555655555554332 223344455556
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHhHHHHHHH
Q 047492 455 SALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKS--NRADIAARLLVEMEENGHKP------TRALHRAVIRC 526 (806)
Q Consensus 455 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p------~~~~~~~ll~~ 526 (806)
..|.+.|.+++|..+++.....+ .-....|+-+...|++. ++..+++++|..-.. +.| +...|..+...
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHH
Confidence 66666666666666665554333 11333444444444442 223333333332211 111 23334444444
Q ss_pred HHccCCcHHHHHHHHHhH-----------hhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHH
Q 047492 527 LCNMETPAKQFLQLLNMQ-----------LSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQ 595 (806)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 595 (806)
|.+.++.+.++..+.+.. .-....|+..|--.+..|... ...++.-+..... |...
T Consensus 1365 Y~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~--~P~~lndLl~~l~----~rlD------- 1431 (1630)
T 1xi4_A 1365 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLS----PRLD------- 1431 (1630)
T ss_pred HHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh--ChHHHHHHHHHhh----hcCC-------
Confidence 444444443332221110 111234555555555555522 2222222222211 1111
Q ss_pred HHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH------------HHH
Q 047492 596 SYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMV------------VGV 663 (806)
Q Consensus 596 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A------------~~~ 663 (806)
+...+..+.+.|+..-+..++...+..+.. ..-..+.+.|....+++.- ..+
T Consensus 1432 -------------~~R~V~l~~~~~~l~lik~yl~~vq~~n~~---~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~L 1495 (1630)
T 1xi4_A 1432 -------------HTRAVNYFSKVKQLPLVKPYLRSVQNHNNK---SVNESLNNLFITEEDYQALRTSIDAYDNFDNISL 1495 (1630)
T ss_pred -------------hHHHHHHHHHcCChHHhHHHHHHHHHhcch---hhhHHHHHHhcCccchHHHHHHHhhccCcCHHHH
Confidence 344455555555555555555555532211 1112222333333332211 222
Q ss_pred HHHHHhCCCCCCchhHHHHHH-HhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCC
Q 047492 664 MNHLEGHGRQVTSFIGNTLLL-HALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFP 742 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 742 (806)
..++.++. ..-+..+.. .|-++|++..|.+++.+.. .+---|.+.++.|+.+.+.+++.-..+.
T Consensus 1496 a~~lekhe----Ll~frrIAa~ly~~n~~~~~ai~l~k~d~--------l~~dAm~~a~~S~d~e~~e~ll~~F~~~--- 1560 (1630)
T 1xi4_A 1496 AQRLEKHE----LIEFRRIAAYLFKGNNRWKQSVELCKKDS--------LYKDAMQYASESKDTELAEELLQWFLQE--- 1560 (1630)
T ss_pred HHHhhhhh----HHHHHHHHHHHHHhcCcHHHHHHHHHhcc--------CHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 22222221 111122222 3445588888887776653 3344566677888888888888777775
Q ss_pred CChhhHHHHHHHHhh-hcHHHHHHH
Q 047492 743 LDTYTYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 743 ~~~~~~~~li~~~~~-g~~~~A~~~ 766 (806)
.+...|-+.+..|.. -+++.++++
T Consensus 1561 ~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1561 EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred CChhHHHHHHHHHhccCCchHHHHH
Confidence 366778888888877 777776654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-16 Score=163.93 Aligned_cols=315 Identities=12% Similarity=0.027 Sum_probs=146.5
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+..+.+..++..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4455555566666666666666666665441 123445555555555566666666666665555444445555555555
Q ss_pred hccCCHHHHHHHHHHhHhCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGREC--VSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLD 288 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (806)
...|++++|.+.++...+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccCHH
Confidence 5555555555555555543320 01122222210000 001112234445555555
Q ss_pred HHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 047492 289 LALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 289 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
+|++.++++.... +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...|+..
T Consensus 138 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 138 AAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544321 1233444455555555555555555555555432 224445555555555555555555555555
Q ss_pred HhCCCCCCHHHHH------------HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHH
Q 047492 369 SEFGLSPNGIVYN------------YLINSLCGDGSTHEAYEVLKNSIDHGLFPGK----KTLSILADALCRDGKFEQMK 432 (806)
Q Consensus 369 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~ 432 (806)
.+.. +.+...+. .+...+.+.|++++|.+.++++.+.... +. ..+..+...+...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4422 11122111 1133344455555555555554443211 11 11223334444445555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 047492 433 DLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM 476 (806)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 476 (806)
..++...+.. +.+..++..+...+...|++++|...++...+.
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555444432 223444444444455555555555555444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-16 Score=163.91 Aligned_cols=164 Identities=10% Similarity=0.038 Sum_probs=92.4
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMRE 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 631 (806)
+..+..+...+...|++++|...++++.+. .|+... +|..+...+...|++++|...|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTE------------------AFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHH------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555666666667777777777776643 333322 366666667777777777777776
Q ss_pred HHhCCCCCC-HHHHH------------HHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHH
Q 047492 632 MRHNGMYPS-MECYE------------ELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIR 698 (806)
Q Consensus 632 m~~~g~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 698 (806)
..+. .|+ ...+. .+...+.+.|++++|...++.+.+..
T Consensus 214 a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------- 264 (359)
T 3ieg_A 214 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--------------------------- 264 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred HHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------------
Confidence 6653 222 22221 11334555555555555555555443
Q ss_pred HHhhhhccCcchh----hHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 699 LRGMLINEQSKIS----LLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 699 ~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|.+.. .+..+...|...|++++|+..++++.+. .+.+...|..+...|.. |++++|...|++..+.
T Consensus 265 --------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 265 --------PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp --------CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22221 2334555666666666666666666664 23355566666666666 6666666666666644
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-15 Score=159.52 Aligned_cols=420 Identities=11% Similarity=0.013 Sum_probs=269.3
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 306 EVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN 385 (806)
Q Consensus 306 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 385 (806)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++..+. .|+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 4566777776 366778888888888877642 335666777777777788888888888887764 366666666664
Q ss_pred HH-HcCCChhHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHH
Q 047492 386 SL-CGDGSTHEAYE----VLKNSID-HGLFP-GKKTLSILADALCR---------DGKFEQMKDLVIFALERNIKLRDVT 449 (806)
Q Consensus 386 ~~-~~~g~~~~a~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~ 449 (806)
.. ...|+.++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 32 34566666554 5555543 24333 34555555554443 4667777777777665211111122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCCH---
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEM------EENG---HKPTR--- 517 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m------~~~~---~~p~~--- 517 (806)
|..........|. . +...++. ...+++..|..++.++ .+.. +.|+.
T Consensus 168 ~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 2222111100000 0 0001110 1233455555555542 1111 23331
Q ss_pred -----HhHHHHHHHHHcc----CCc---HHHHHHHHHhHhhCCCCChhhHHHHHHhhhc-------CCChH-------HH
Q 047492 518 -----ALHRAVIRCLCNM----ETP---AKQFLQLLNMQLSHQETNFQIYNFFIDGAGH-------VKRPD-------LA 571 (806)
Q Consensus 518 -----~~~~~ll~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a 571 (806)
..+...+...... ++. ...+....+......+.++..|..++..+.+ .|+++ +|
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 2233222221111 111 1233344555555567788888888888875 78887 89
Q ss_pred HHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHH
Q 047492 572 RAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS-M-ECYEELIK 649 (806)
Q Consensus 572 ~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~l~~ 649 (806)
..+|++..+. +.|+... .|..++..+.+.|++++|..+|+++.+ ..|+ . ..|..++.
T Consensus 306 ~~~~~~Al~~-~~p~~~~------------------l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 306 ANIYERAIST-LLKKNML------------------LYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMK 364 (530)
T ss_dssp HHHHHHHTTT-TCSSCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCcccHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHH
Confidence 9999998851 3565443 488888999999999999999999998 4554 2 47888888
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHH-hhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchh
Q 047492 650 LLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH-ALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQ 728 (806)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 728 (806)
.+.+.|++++|.+++++..+.... +...+...... +...|+.++|...++.+....|.+...|..++..+.+.|+.++
T Consensus 365 ~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 365 FARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 888999999999999999876432 22222222222 2358999999999999998888899999999999999999999
Q ss_pred hHHHHHHHHHcCC-CCC--hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 729 DIEGLQKMIEQCF-PLD--TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 729 A~~~~~~~~~~~~-~~~--~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|..+|+++...+. .|+ ...|...+..... |+.+.+..+++++.+.
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999998631 222 3378888887777 9999999999998865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-16 Score=157.47 Aligned_cols=271 Identities=11% Similarity=-0.008 Sum_probs=152.4
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHH
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 207 (806)
+.+...+..+...+...|++++|+.+|+++.+.. +.+..++..++.++...|++++|..+++++.+..+.+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3455566666666666777777777777766552 223445555666666677777777777777666666666666666
Q ss_pred HHhhccC-CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCC
Q 047492 208 KCLCKQK-KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGR 286 (806)
Q Consensus 208 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (806)
..+...| ++++|.+.|+...+... .+...|..+...+...|++++|.+.|++.... .+.+...+..+...+...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhh
Confidence 6666666 67777777776665543 33455666666666667777776666666553 12223444455555666666
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHHcCCh
Q 047492 287 LDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQ--------ISPDGVTMNTVLCFFCKAGMV 358 (806)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~~~~~~~~~ll~~~~~~g~~ 358 (806)
+++|.+.+++.... .+.+...+..+...+...|++++|...+++..+.. .+.+..++..+..+|...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 66666666655431 12233445555555555556655555555554421 012234445555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 359 DVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSID 405 (806)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 405 (806)
++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++..+
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 55555555544432 22334444555555555555555555555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.4e-16 Score=157.35 Aligned_cols=291 Identities=10% Similarity=-0.045 Sum_probs=161.2
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 047492 164 LDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVD 243 (806)
Q Consensus 164 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 243 (806)
.+...+..+...+...|++++|..+++++.+..+.+..++..++..+...|++++|..+++++.+... .+..++..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHH
Confidence 34555666666666667777777777777666665666666666666666777777777766665433 33455666666
Q ss_pred HHHhcC-CHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCC
Q 047492 244 ALCKNS-RFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENR 322 (806)
Q Consensus 244 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 322 (806)
.+...| ++++|.+.|++.... .+.+...|..+...+...|++++|++.|++..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~------------------------ 152 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA------------------------ 152 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHH------------------------
Confidence 666666 666666666665543 12223445555555555555555555555544
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 047492 323 LMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKN 402 (806)
Q Consensus 323 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 402 (806)
+... .+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++
T Consensus 153 ------------~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 153 ------------QLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp ------------HHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------Hhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3221 123333344444445555555555555544432 22344455555555555555555555555
Q ss_pred HHhCC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047492 403 SIDHG--------LFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELS 474 (806)
Q Consensus 403 m~~~~--------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 474 (806)
..+.. ...+..++..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44311 12234455566666666666666666666665543 3345566666666666666666666666665
Q ss_pred hcCCCCCHHHHHHHHHHH-HhcCC
Q 047492 475 RMNKVASENTYIQLIHGF-NKSNR 497 (806)
Q Consensus 475 ~~~~~~~~~~~~~li~~~-~~~~~ 497 (806)
+..+. +...+..+..++ ...|+
T Consensus 298 ~~~p~-~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 298 GLRRD-DTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp TTCSC-CHHHHHHHHHHHHTTTTC
T ss_pred ccCCC-chHHHHHHHHHHHHHhCc
Confidence 54433 555566666555 33444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-13 Score=148.72 Aligned_cols=274 Identities=9% Similarity=0.000 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CC
Q 047492 320 ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG----DG 391 (806)
Q Consensus 320 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 391 (806)
.++.++|...|++..+.| +...+..|-..|.. .+++++|.+.|+...+.| +...+..|...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 445555555555554433 33344444444444 455555555555555433 33444444444444 45
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 047492 392 STHEAYEVLKNSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKV 463 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~ 463 (806)
+.++|.+.|++..+.| +...+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .++.
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 5556666665555543 44455555555554 555666666666555543 33444445555544 4556
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHH
Q 047492 464 EVGYLIHSELSRMNKVASENTYIQLIHGFNK----SNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQ 539 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 539 (806)
++|..+|+...+.+ +...+..+...|.. .+++++|+..|++..+.|
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------------------------- 289 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------------------------- 289 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------------------------
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------------------------
Confidence 66666666555443 34445555555555 566666666666655432
Q ss_pred HHHhHhhCCCCChhhHHHHHHhhhcC-----CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHH
Q 047492 540 LLNMQLSHQETNFQIYNFFIDGAGHV-----KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIV 614 (806)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 614 (806)
++..+..+...|... +++++|...|++..+.+.. . ++..+..
T Consensus 290 -----------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~---~-------------------a~~~lg~ 336 (490)
T 2xm6_A 290 -----------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA---T-------------------AQANLGA 336 (490)
T ss_dssp -----------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH---H-------------------HHHHHHH
T ss_pred -----------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH---H-------------------HHHHHHH
Confidence 111222222333332 5666666666666554311 1 1444555
Q ss_pred HHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCC
Q 047492 615 GLCKAM---KANLAWGFMREMRHNGMYPSMECYEELIKLLCS----TKNYDMVVGVMNHLEGHG 671 (806)
Q Consensus 615 ~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 671 (806)
.|...| ++++|...|++..+.| +...+..+...|.. .+++++|.+.+++..+.+
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 555444 5566666666666542 44555555555555 566666666666665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-14 Score=153.98 Aligned_cols=428 Identities=10% Similarity=0.027 Sum_probs=233.8
Q ss_pred HHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCC
Q 047492 154 FGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGREC 232 (806)
Q Consensus 154 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 232 (806)
|++..+. .| +..+|..++. +.+.|++++|..+|+.+.+..+.+...|..++..+.+.|++++|..+|++.+...
T Consensus 2 le~al~~--~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEE--NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHH--CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhh--CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 4444444 33 5668888887 4678888888999988888877777788888888888888999999888888765
Q ss_pred CCHHhHHHHHHHH-HhcCCHHHHHH----HHHHhhhCCCCCc-chhhHHHHHHHHHH---------cCCHHHHHHHHHhh
Q 047492 233 VSGFMIGIVVDAL-CKNSRFEQAGK----LLEDFKDRDDVVK-LEKAYDVWLRNLVR---------AGRLDLALEFLKSK 297 (806)
Q Consensus 233 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~ 297 (806)
|+...|...+... ...|+++.|.+ +|+.....-|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 4666777666433 34577666654 6666544324333 45667776666554 57788888888877
Q ss_pred hhcCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH------
Q 047492 298 NSLEGYVPEV---FRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSR------ 368 (806)
Q Consensus 298 ~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~------ 368 (806)
.. .|+. ..|..........|. ..+..++. .+.++++.|..+++.+
T Consensus 157 l~----~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 157 CV----NPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp TT----SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh----chhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHH
Confidence 64 1322 222222211000000 00000000 0112233343333331
Q ss_pred HhCC---CCCC--------HHHHHHHHHHHHcC----CCh----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-----
Q 047492 369 SEFG---LSPN--------GIVYNYLINSLCGD----GST----HEAYEVLKNSIDHGLFPGKKTLSILADALCR----- 424 (806)
Q Consensus 369 ~~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----- 424 (806)
.+.. ++|+ ...|...+...... ++. +.+..+|++...... -+...|..+...+.+
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhh
Confidence 1110 1222 12333333222111 111 244455555544321 134444444444443
Q ss_pred --cCChh-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh
Q 047492 425 --DGKFE-------QMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASE-NTYIQLIHGFNK 494 (806)
Q Consensus 425 --~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~ 494 (806)
.|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+..+. +. ..|..++..+.+
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARR 368 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHH
Confidence 45544 55555555544212334455555555555555666666655555553322 22 345555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHH-HHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHH
Q 047492 495 SNRADIAARLLVEMEENGHKPT-RALHRAVIRC-LCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLAR 572 (806)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 572 (806)
.|++++|.++|++..+. .|+ ...+...... +...++ .+.+...++......+.++..|..++..+.+.|+.++|.
T Consensus 369 ~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~-~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 369 AEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 55556666666555543 121 1111111111 112333 233334444334444557788999999999999999999
Q ss_pred HHHHHHHHCC-CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 573 AVYELMQRSG-LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 573 ~~~~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
.+|++....+ ..|+... ..|...+......|+.+.+..+++++.+
T Consensus 446 ~~~~~al~~~~~~~~~~~-----------------~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSG-----------------EIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHSCCSCGGGCH-----------------HHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998753 2332111 1377777778889999999999988876
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=158.04 Aligned_cols=301 Identities=11% Similarity=-0.061 Sum_probs=144.9
Q ss_pred cCCcchHHH-HHHHHHhcCCC----CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 047492 179 QGCFDAVAV-VSKQISMRGFE----NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 179 ~~~~~~a~~-~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
.|++++|.. .+++.....+. +...+..+...+...|++++|...|+++.+..+ .+..++..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 55554444332 234566666667777777777777777666543 345566666667777777777
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDM 333 (806)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (806)
|...|++.... .+.+..++..+...+...|++++|++.++++.......+. .+..+... ..
T Consensus 117 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~-------~~-------- 177 (368)
T 1fch_A 117 AISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH--LVTPAEEG-------AG-------- 177 (368)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG--GCC----------------------
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH--HHHHHHHH-------hh--------
Confidence 77777766654 1334456666666666666666666666666542211111 11100000 00
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 047492 334 KEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLS-PNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412 (806)
Q Consensus 334 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 412 (806)
...+. ..+. .+..+...|++++|...|+++.+.... ++..++..+...+.+.|++++|...++++.+... .+.
T Consensus 178 ---~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~ 251 (368)
T 1fch_A 178 ---GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDY 251 (368)
T ss_dssp ------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred ---hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCH
Confidence 00000 0000 111112444455555555544432210 0244444555555555555555555555444321 134
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC----------CH
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA----------SE 482 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~ 482 (806)
.++..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...++...+..+.. ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 445555555555555555555555554443 3344455555555555555555555555554432221 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 047492 483 NTYIQLIHGFNKSNRADIAARLLV 506 (806)
Q Consensus 483 ~~~~~li~~~~~~~~~~~a~~~~~ 506 (806)
.+|..+..+|...|++++|..++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 556666666666666666655554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-13 Score=144.24 Aligned_cols=352 Identities=13% Similarity=0.058 Sum_probs=279.2
Q ss_pred chhHHHHHHHHHHh----cCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCcc
Q 047492 130 QVRFNDTLVMGYAL----AGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVE----QGCFDAVAVVSKQISMRGFENDV 201 (806)
Q Consensus 130 ~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 201 (806)
+...+..+...|.. .+++++|+..|++..+.| ++.++..+-..|.. .+++++|...|++..+.+ +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHH
Confidence 56666667777777 788899999998887764 56677778788887 788889999998888764 445
Q ss_pred chHHHHHHhhc----cCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCcchhh
Q 047492 202 TRTIMLKCLCK----QKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK----NSRFEQAGKLLEDFKDRDDVVKLEKA 273 (806)
Q Consensus 202 ~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 273 (806)
.+..|...|.. .+++++|.++|++..+.+ +...+..|...|.. .+++++|.+.|++..+. + +...
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a 185 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHH
Confidence 66667777777 788999999999888775 35667777778877 78899999999888775 3 4567
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhH
Q 047492 274 YDVWLRNLVR----AGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLK----ENRLMEVFDLFMDMKEGQISPDGVTM 345 (806)
Q Consensus 274 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~ 345 (806)
+..+...|.. .++.++|++.|++..+ . .+...+..+...|.. .++.++|..+|++..+.| +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSAT-S---GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 7777778877 7899999999998876 2 345566777777775 789999999999888764 45566
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-----CChhHHHHHHHHHHhCCCCCCHHHHH
Q 047492 346 NTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGD-----GSTHEAYEVLKNSIDHGLFPGKKTLS 416 (806)
Q Consensus 346 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~ 416 (806)
..+-..|.. .++.++|.+.|+...+.| +...+..+...|... ++.++|...|++..+.| +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 667777777 789999999999988754 556777777777776 89999999999988875 456677
Q ss_pred HHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 047492 417 ILADALCRDG---KFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKVEVGYLIHSELSRMNKVASENTYIQLI 489 (806)
Q Consensus 417 ~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 489 (806)
.+...|...| +.++|.+++++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777777656 7889999999988874 56778888888888 789999999999988765 577888888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 047492 490 HGFNK----SNRADIAARLLVEMEENG 512 (806)
Q Consensus 490 ~~~~~----~~~~~~a~~~~~~m~~~~ 512 (806)
..|.. .++.++|...|++..+.+
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 88888 899999999999998855
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-16 Score=159.52 Aligned_cols=305 Identities=11% Similarity=0.037 Sum_probs=183.4
Q ss_pred HHhcCChhhHHH-HHHHHhhcCC-CC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCH
Q 047492 141 YALAGKPDIALH-LFGKMRFQGM-DL--DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKI 216 (806)
Q Consensus 141 ~~~~~~~~~A~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 216 (806)
+...|++++|+. .|++...... .| +...+..+...+...|++++|...|+++.+..+.+..++..+..++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 344578888888 8886654311 11 3567888888899999999999999999988877888889999999999999
Q ss_pred HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHh
Q 047492 217 DEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKS 296 (806)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (806)
++|.+.|++..+..+ .+..++..+...+...|++++|.+.|+++....... ...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY--AHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT--GGGCC---------------------
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHH-------hh-------
Confidence 999999999887654 467788889999999999999999999888652111 1111111000 00
Q ss_pred hhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 047492 297 KNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISP-DGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSP 375 (806)
Q Consensus 297 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (806)
...+. ..+. .+..+...|++++|...++++.+..... +..++..+...|.+.|++++|...|+++.+.. +.
T Consensus 178 -----~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -----GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -----hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 00000 0011 1112225556666666666655532111 34555666666666666666666666655432 23
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----------C
Q 047492 376 NGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIK----------L 445 (806)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~ 445 (806)
+..++..+...+...|++++|...|+++.+... .+...+..+...+.+.|++++|...++.+.+.... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 455666666666666666666666666655432 24556666666666666666666666666553211 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH
Q 047492 446 RDVTYDKFISALCKANKVEVGYLIHS 471 (806)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~a~~~~~ 471 (806)
...+|..+..+|...|+.++|..+++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14566677777777777777766654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-15 Score=150.07 Aligned_cols=238 Identities=13% Similarity=0.058 Sum_probs=69.4
Q ss_pred hcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHH
Q 047492 143 LAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEY 222 (806)
Q Consensus 143 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 222 (806)
+.|+.++|.+.++++. ++.+|..+..++.+.|++++|++.|... ++..+|..++..+...|++++|..+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5566777777777773 2347777777777777777777777442 4555667777777777777777775
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCC
Q 047492 223 FQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEG 302 (806)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 302 (806)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 5555542 2345566667777777777776665553 244456666666666666666666666654
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047492 303 YVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNY 382 (806)
Q Consensus 303 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 382 (806)
..|..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 24666666666666666666666655 24566666666666666666664433321 122222334
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 383 LINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALC 423 (806)
Q Consensus 383 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 423 (806)
++..|.+.|++++|..+++...... .-....|+-+.-.|+
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 5555666666666666665555333 223444444444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-14 Score=152.00 Aligned_cols=346 Identities=14% Similarity=-0.032 Sum_probs=176.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhC-----C-C-CCCHHHHHHHHHHHHc--CCChhHHHHHHHHHHhCCCCCCHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSRSEF-----G-L-SPNGIVYNYLINSLCG--DGSTHEAYEVLKNSIDHGLFPGKK 413 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~-~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~ 413 (806)
.+|+.+..+|...|++++|...+++..+. + . .....++..+..++.. .+++++|++.|++..+.... +..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~ 173 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPE 173 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHH
Confidence 45555555566666666666555554321 0 0 0122344433333332 34566666666666654321 233
Q ss_pred HHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHH
Q 047492 414 TLSILADA---LCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKVEVGYLIHSELSRMNKVASENTYI 486 (806)
Q Consensus 414 ~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 486 (806)
.+..+..+ +...++.++|.+.+++..+.. +.+..++..+...+.. .|+.++|.+.+++.....+. +...+.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~ 251 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHH
Confidence 33333322 334455666666666666554 3344444444444333 34566677777666655444 566666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcC
Q 047492 487 QLIHGFNKSNRADIAARLLVEMEENGHKPTRA-LHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHV 565 (806)
Q Consensus 487 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 565 (806)
.+...|...|++++|...+++..+ ..|+.. ++..+..++..... ... ... ...........
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~y~~~~~------~~~----~~~------~~~~~~~~~~~ 313 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALE--YIPNNAYLHCQIGCCYRAKVF------QVM----NLR------ENGMYGKRKLL 313 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHH------HHH----HC------------CHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHH------Hhh----hHH------HHHHHHHHHHH
Confidence 777777777777777777777665 234322 22222222110000 000 000 00000001112
Q ss_pred CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--H
Q 047492 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSME--C 643 (806)
Q Consensus 566 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~ 643 (806)
+..+.|...|++..+. .|+... ++..+...|...|++++|+..|++..+....+... .
T Consensus 314 ~~~~~A~~~~~~a~~~--~~~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEA--NDNLFR------------------VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHHHHHHHHHHHH--CTTTCC------------------CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHhhc--CCchhh------------------hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 2357788888887753 343322 48889999999999999999999998854333221 2
Q ss_pred HHHHHH-HHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhc
Q 047492 644 YEELIK-LLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSG 722 (806)
Q Consensus 644 ~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (806)
+..+.. .+...|++++|+..+++..+.... ... ..+....+.++++......|.+..+++.|..+|..
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~---------~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SRE---------KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHH---------HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHH---------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 223322 234689999999999998876533 211 12223344455555556667777777777777777
Q ss_pred cccchhhHHHHHHHHHcC
Q 047492 723 CIKVSQDIEGLQKMIEQC 740 (806)
Q Consensus 723 ~g~~~~A~~~~~~~~~~~ 740 (806)
.|+.++|++.|+++++.+
T Consensus 443 ~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHCC-------------
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 777777777777777754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=153.26 Aligned_cols=348 Identities=11% Similarity=0.071 Sum_probs=159.8
Q ss_pred HhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHH
Q 047492 107 HCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVA 186 (806)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 186 (806)
-+.|+++.|.++++.+.. +.+|+.+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 456778899999998833 359999999999999999999999763 47789999999999999999999
Q ss_pred HHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 047492 187 VVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDD 266 (806)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 266 (806)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+.
T Consensus 82 ~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---- 149 (449)
T 1b89_A 82 KYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 149 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT----
T ss_pred HHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----
Confidence 977777764 5567889999999999999999998875 2666799999999999999999999999872
Q ss_pred CCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047492 267 VVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMN 346 (806)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 346 (806)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-..
T Consensus 150 ------n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 150 ------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 5999999999999999999999987 26889999999999999999996655432 23444455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCC------CHHHHHHHH
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDH-GLFP------GKKTLSILA 419 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~ll 419 (806)
.++..|.+.|.+++|..+++...... +-....|+-|-.+|++- ++++..+.++..... ++.| +...|.-+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 78899999999999999999987654 45567788887777764 344444443332211 1111 234566677
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047492 420 DALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRAD 499 (806)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 499 (806)
..|...++++.|... |.++ +++..--..+.....+..+.+--.+...-..+. .+...+.|+.++...=+..
T Consensus 290 ~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~ 360 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHT 360 (449)
T ss_dssp HHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHH
T ss_pred HHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcH
Confidence 777777777776653 3333 233333333444445555555444443333333 2335666666666666666
Q ss_pred HHHHHHHH
Q 047492 500 IAARLLVE 507 (806)
Q Consensus 500 ~a~~~~~~ 507 (806)
.+.++|+.
T Consensus 361 r~v~~~~~ 368 (449)
T 1b89_A 361 RAVNYFSK 368 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=180.21 Aligned_cols=118 Identities=12% Similarity=0.154 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhhhh--cCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047492 271 EKAYDVWLRNLVRAGRLDLALEFLKSKNS--LEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV 348 (806)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 348 (806)
..||+++|++|++.|++++|.++|++|.+ ..|+.||++|||+||++|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34666666666666666666666665542 1356666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 349 LCFFCKAGMV-DVAIELYKSRSEFGLSPNGIVYNYLINSLC 388 (806)
Q Consensus 349 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 388 (806)
|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 6666666653 556666666666666666666666665443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=163.13 Aligned_cols=264 Identities=9% Similarity=-0.036 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHh
Q 047492 482 ENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDG 561 (806)
Q Consensus 482 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 561 (806)
...|..+...+.+.|++++|+..|+++.+. .| .+..+|..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p----------------------------------~~~~~~~~lg~~ 108 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DP----------------------------------GDAEAWQFLGIT 108 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT----------------------------------TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc----------------------------------CCHHHHHHHHHH
Confidence 334556666666666666666666666542 11 234445555666
Q ss_pred hhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-
Q 047492 562 AGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS- 640 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~- 640 (806)
|...|++++|...|+++.+. .|+... +|..+...|...|++++|...|+++.+. .|+
T Consensus 109 ~~~~g~~~~A~~~~~~al~~--~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 166 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLEL--QPNNLK------------------ALMALAVSYTNTSHQQDACEALKNWIKQ--NPKY 166 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCCHH------------------HHHHHHHHHHccccHHHHHHHHHHHHHh--Cccc
Confidence 66666666666666666543 233221 3566666666666666666666666552 121
Q ss_pred ----------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CchhHHHHHHHhhccccHHHHHHHHHhhhhccCcc
Q 047492 641 ----------MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV-TSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 641 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
...+..+...+...|++++|.+.++++.+..... +...+..+...+...|+.++|...++++....|.+
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 246 (365)
T 4eqf_A 167 KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246 (365)
T ss_dssp HCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 1222334556666777777777777776654331 45566666667777777777777777777767777
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC-----------C
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYE-----------P 777 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~-----------p 777 (806)
..++..++.+|...|++++|+..++++.+. .+.+..+|..+..+|.. |++++|...|+++...... .
T Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 325 (365)
T 4eqf_A 247 YSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAI 325 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhh
Confidence 788888888888889999999999988886 34557788888888888 9999999998888765211 1
Q ss_pred ChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 778 DQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 778 ~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
+..+|..+..++...|+.+.|.++.++
T Consensus 326 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 326 SGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 356788888889999999988887653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-17 Score=176.34 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=124.2
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047492 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMKE---GQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYN 381 (806)
Q Consensus 305 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 381 (806)
.-..|||++|++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457899999999999999999999988764 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 047492 382 YLINSLCGDGST-HEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLR------DVTYDKFI 454 (806)
Q Consensus 382 ~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ll 454 (806)
+||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+. .+.+.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999985 78899999999999999999999998776554 333334333 3344444 34555566
Q ss_pred HHHHhcC
Q 047492 455 SALCKAN 461 (806)
Q Consensus 455 ~~~~~~~ 461 (806)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666655
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-15 Score=153.56 Aligned_cols=272 Identities=10% Similarity=0.011 Sum_probs=125.9
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 047492 168 AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK 247 (806)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (806)
.+..+...+.+.|++++|...|+.+.+..+.+..++..+...+...|++++|.+.|++..+..+ .+..++..+...|..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 3555555555555555555555555555544555555555555555555555555555554432 234555555556666
Q ss_pred cCCHHHHHHHHHHhhhCCCCCcch-hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHH
Q 047492 248 NSRFEQAGKLLEDFKDRDDVVKLE-KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEV 326 (806)
Q Consensus 248 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 326 (806)
.|++++|+..|+++... .|+. ..+..+ ......+..+...+...|++++|
T Consensus 146 ~g~~~~A~~~~~~al~~---~p~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQ---NPKYKYLVKNK--------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp TTCHHHHHHHHHHHHHH---CHHHHCC---------------------------------------------CCHHHHHH
T ss_pred cccHHHHHHHHHHHHHh---CccchHHHhhh--------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 66666666666555432 1110 011000 00011122233444444444444
Q ss_pred HHHHHHHHhCCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 327 FDLFMDMKEGQIS-PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSID 405 (806)
Q Consensus 327 ~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 405 (806)
...++++.+.... ++..++..+...|...|++++|.+.|++..+.. +.+..+|..+..+|...|++++|.+.|+++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444443211 034444445555555555555555555544422 22344555555555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047492 406 HGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNI-----------KLRDVTYDKFISALCKANKVEVGYLIHS 471 (806)
Q Consensus 406 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 471 (806)
.... +..++..+..+|...|++++|...++++.+... ..+..+|..+..++...|+.+.+.++.+
T Consensus 276 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 276 IQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred cCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3211 344455555555555555555555555443210 0123456666666666666666655443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-14 Score=139.54 Aligned_cols=254 Identities=9% Similarity=0.031 Sum_probs=180.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCcch--hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcC
Q 047492 244 ALCKNSRFEQAGKLLEDFKDRDDVVKLE--KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKEN 321 (806)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 321 (806)
-....|++..|+..++.... ..|+. .....+.++|...|+++.|+..++.. ..|+..++..+...+...+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCC
Confidence 34556777777777776543 23333 34455667778888888877755432 2456667777778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 322 RLMEVFDLFMDMKEGQISPD-GVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 322 ~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
+.++|++.++++...+..|+ ...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888877665454 44555556778888888888888876 356778888888888888888888888
Q ss_pred HHHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 047492 401 KNSIDHGLFPGKKTL---SILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 401 ~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 477 (806)
+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.+
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887653 443211 122333445578888888888888774 5677788888888888888888888888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCH
Q 047492 478 KVASENTYIQLIHGFNKSNRADI-AARLLVEMEENGHKPTR 517 (806)
Q Consensus 478 ~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~p~~ 517 (806)
+. +..++..++..+...|+.++ +.++++++.+ +.|+.
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~ 268 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSH 268 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTC
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCC
Confidence 65 77788888888888888765 5678888776 45554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.8e-15 Score=149.95 Aligned_cols=275 Identities=11% Similarity=0.026 Sum_probs=161.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCN 529 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 529 (806)
+..+...+...|++++|..+++.+.+..+. +...|..+...+...|++++|...++++.+. .
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~--------------- 85 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--D--------------- 85 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C---------------
Confidence 444555566666666666666666655443 5555666666666666666666666665541 1
Q ss_pred cCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhH
Q 047492 530 METPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLY 609 (806)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 609 (806)
+.+..++..+...|...|++++|.+.++++.+. .|+... .+
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------------------~~ 126 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQ------------------LG 126 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTT------------------C-
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHH------------------HH
Confidence 123455666666666666666666666666543 232221 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 610 NTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEEL-IK-LLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 610 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
..+...+ |+......+ .. .+...|++++|.+.++++.+.... +...+..+...+.
T Consensus 127 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 183 (327)
T 3cv0_A 127 SVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYN 183 (327)
T ss_dssp -----------------------------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 2220000 000000000 11 133444455555555554443221 3334444444455
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~ 766 (806)
..|+.++|...++++....|.+..++..++..|...|++++|+..++++.+. .+.+...|..+...|.. |++++|...
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI-NPGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 5555555555555555555566667778888888888888889988888886 35567788888888888 999999999
Q ss_pred HHHHHHcCCCC-----------ChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 767 FNRMRRKGYEP-----------DQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 767 ~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
+++........ +..++..+..++.+.|+.++|.+++++.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 98887653332 4677888888999999999998887653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-14 Score=145.17 Aligned_cols=279 Identities=11% Similarity=-0.050 Sum_probs=175.3
Q ss_pred cchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHH
Q 047492 201 VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRN 280 (806)
Q Consensus 201 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (806)
..+..+...+...|++++|..+|+++.+..+ .+..++..+...+...|++++|.+.|++.... .+.+...+..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHH
Confidence 3456666667777777777777777666543 34556666666677777777777777666553 22334555566666
Q ss_pred HHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HH-HHHHcCCh
Q 047492 281 LVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV-LC-FFCKAGMV 358 (806)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~-~~~~~g~~ 358 (806)
+...|++++|++.++++..... .+...+..+... .|+......+ .. .+...|++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST--TTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 6666666666666666554211 111111111000 0001111111 11 25566677
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047492 359 DVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFA 438 (806)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (806)
++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777776643 33566777777777777888888888877776532 25667777777888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 439 LERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA-----------SENTYIQLIHGFNKSNRADIAARLLVE 507 (806)
Q Consensus 439 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~ 507 (806)
.+.. +.+...+..+...|.+.|++++|.+.++...+..+.. +...|..+...+.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7764 4456777788888888888888888888877655442 466788888888889999888888775
Q ss_pred HH
Q 047492 508 ME 509 (806)
Q Consensus 508 m~ 509 (806)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-13 Score=143.86 Aligned_cols=372 Identities=10% Similarity=-0.034 Sum_probs=232.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-----C
Q 047492 341 DGVTMNTVLCFFCKAGMVDVAIELYKSRSEF--------GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDH-----G 407 (806)
Q Consensus 341 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~ 407 (806)
....||.+...+...|+.++|++.|++..+. .-.....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888888888888888888888775431 11234578899999999999999999999887631 1
Q ss_pred -CC-CCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHhhcCCCC
Q 047492 408 -LF-PGKKTLSILADALCRD--GKFEQMKDLVIFALERNIKLRDVTYDKFISA---LCKANKVEVGYLIHSELSRMNKVA 480 (806)
Q Consensus 408 -~~-p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~ 480 (806)
.. ....++.....++... +++++|.+.|++..+.. +-+...+..+..+ +...++.++|.+.++...+.++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 11 1345565555555443 46889999999888765 3344455444444 34567778888888887776654
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHH
Q 047492 481 SENTYIQLIHGFNK----SNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYN 556 (806)
Q Consensus 481 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (806)
+...+..+...+.. .|++++|.+.+++.... .+.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------------------------------------~~~~~~~~~ 251 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------------------------------------APGVTDVLR 251 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH------------------------------------CSSCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------------------------------------CccHHHHHH
Confidence 56666655555444 45667777777776552 233556677
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHh------------------
Q 047492 557 FFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCK------------------ 618 (806)
Q Consensus 557 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------------ 618 (806)
.+...|...|++++|...|++..+. .|+... ++..+..+|..
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~------------------~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEY--IPNNAY------------------LHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH------------------HHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHh--CCChHH------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7888888999999999999988854 465543 13333333321
Q ss_pred -cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch--hHHHHHH-HhhccccHHH
Q 047492 619 -AMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF--IGNTLLL-HALKTRDLYE 694 (806)
Q Consensus 619 -~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~ 694 (806)
.+.+++|...+++..+.. +.+..++..+...+...|++++|.+.+++..+....+... .+..+.. .....|+.++
T Consensus 312 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 233567888888877642 2245567778889999999999999999998876544321 2222222 2346788999
Q ss_pred HHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 695 AWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 695 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|...+.++..-.|....... ....+..++++..+. .+.+..+|+.|..+|.. |++++|++.|++..+.
T Consensus 391 Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 391 AIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999988765554432221 122345566666665 36678899999999999 9999999999998876
Q ss_pred C-CCCChhhH
Q 047492 774 G-YEPDQWTF 782 (806)
Q Consensus 774 g-~~p~~~~~ 782 (806)
| ..|+..+|
T Consensus 460 ~~~~p~a~~~ 469 (472)
T 4g1t_A 460 GSLIPSASSW 469 (472)
T ss_dssp ----------
T ss_pred CCCCCcHhhc
Confidence 5 34554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-13 Score=136.28 Aligned_cols=254 Identities=11% Similarity=0.047 Sum_probs=137.3
Q ss_pred hhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHH
Q 047492 210 LCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDL 289 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (806)
....|++..|...++......+.........+..+|...|+++.|+..++. ..+|+..++..+...+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 334555555555555544333222122334445556666666655554322 123444555555555555666666
Q ss_pred HHHHHHhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 047492 290 ALEFLKSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 290 a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
|++.++++.. .+..|+ ...+..+...+...|++++|++.+++ +.+...+..+...|.+.|++++|.+.|+.+
T Consensus 84 A~~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 84 IVAELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666665543 222333 22333344555666666666666654 245555666666666666666666666666
Q ss_pred HhCCCCCCHHHH---HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047492 369 SEFGLSPNGIVY---NYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKL 445 (806)
Q Consensus 369 ~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (806)
.+.. |+.... ...+..+...|++++|..+|+++.+.. ..+...++.+..++.+.|++++|...++++.+.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 5532 332211 122233344466666666666666552 2355666666666666666666666666666654 44
Q ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHhhcCCC
Q 047492 446 RDVTYDKFISALCKANKVEV-GYLIHSELSRMNKV 479 (806)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~ 479 (806)
+..++..++..+...|+.++ +.++++.+.+.++.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 55566666666666666654 45666666655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.8e-13 Score=129.70 Aligned_cols=222 Identities=10% Similarity=-0.032 Sum_probs=185.6
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMRE 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 631 (806)
...+..+...+...|++++|...|++..+.. .+... |..+..++...|++++|...+++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------------------~~~~~~~~~~~~~~~~A~~~~~~ 63 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITY-------------------LNNRAAAEYEKGEYETAISTLND 63 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHH-------------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHH-------------------HHHHHHHHHHcccHHHHHHHHHH
Confidence 4567788888999999999999999988765 44443 88899999999999999999999
Q ss_pred HHhCC--CCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhc
Q 047492 632 MRHNG--MYPS----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLIN 705 (806)
Q Consensus 632 m~~~g--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 705 (806)
..+.. ..++ ..++..+..++...|++++|...++++.+.... ...+...|+.++|...++.+...
T Consensus 64 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHc
Confidence 88732 1122 577888999999999999999999999886533 23456778899999999999888
Q ss_pred cCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHH
Q 047492 706 EQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDI 784 (806)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (806)
.|.+..++..+...|...|++++|+..++++.+. .+.+...|..+...|.. |++++|+..+++..+.. +.+..++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 212 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIR 212 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHH
Confidence 8888889999999999999999999999999987 35577889999999999 99999999999998763 335677888
Q ss_pred HHhhhhccCCHHHHHHHHHhh
Q 047492 785 LKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 785 l~~~~~~~g~~~eA~~~l~~m 805 (806)
+..++.+.|++++|.+.+++.
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999998764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-13 Score=124.92 Aligned_cols=195 Identities=12% Similarity=-0.093 Sum_probs=160.5
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHH
Q 047492 605 PRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLL 683 (806)
Q Consensus 605 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 683 (806)
+...+..+...+.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|...+++..+..+ .+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 4456889999999999999999999999984 44 677888899999999999999999999998763 3456677788
Q ss_pred HHhhcc-----------ccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHH
Q 047492 684 LHALKT-----------RDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILL 752 (806)
Q Consensus 684 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 752 (806)
..+... |+.++|...++++....|.+...+..+..+|...|++++|+..|+++.+.. .+...|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888888 999999999999999999999999999999999999999999999999986 7888999999
Q ss_pred HHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 753 RRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 753 ~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
.+|.. |++++|+..|++..+... .+...+..+..++.+.|++++|++.+++-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999 999999999999987632 35677888999999999999999998763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-12 Score=124.48 Aligned_cols=222 Identities=11% Similarity=0.031 Sum_probs=125.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----hhhHHH
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQI--SPD----GVTMNT 347 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~~ 347 (806)
|..+...+...|++++|++.|++..... .+...+..+..++...|++++|...+++..+... .++ ..++..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 3334444444444444444444443321 3344444444444445555555554444443211 011 345555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047492 348 VLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGK 427 (806)
Q Consensus 348 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 427 (806)
+...|...|++++|...|++..+. .|+. ..+...|++++|.+.++++...... +...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 555566666666666666665542 2332 2234445566666666666654221 34455566666666777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 428 FEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVE 507 (806)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 507 (806)
+++|...++.+.+.. +.+..++..+...|...|++++|...++...+..+. +...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777777777666654 345666777777777777777777777777665544 566777777777777777777777777
Q ss_pred HHH
Q 047492 508 MEE 510 (806)
Q Consensus 508 m~~ 510 (806)
..+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.3e-12 Score=117.81 Aligned_cols=199 Identities=13% Similarity=-0.026 Sum_probs=121.2
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384 (806)
Q Consensus 305 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 384 (806)
++...+..+...+.+.|++++|...|++..+... .+...+..+..++.+.|++++|...|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3444555555566666666666666666655421 245555566666666666666666666665532 23445566666
Q ss_pred HHHHcC-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047492 385 NSLCGD-----------GSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKF 453 (806)
Q Consensus 385 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 453 (806)
..+... |++++|...|++..+.... +...+..+...+...|++++|...+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 7777777777777765332 45666777777777777777777777777766 566777777
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 454 ISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEME 509 (806)
Q Consensus 454 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 509 (806)
..+|...|++++|...++...+..+. +...+..+...+...|++++|...|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777778888888777777776554 66777777777777888888877776653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-11 Score=128.06 Aligned_cols=378 Identities=12% Similarity=-0.025 Sum_probs=208.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 047492 313 LVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMV---DVAIELYKSRSEFGLSPNGIVYNYLINSLCG 389 (806)
Q Consensus 313 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 389 (806)
+...+.+.|++++|+++|++..+.| +...+..+-..|...|+. ++|...|+...+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 3445566677777777777776654 223333444455556666 7777777776642 44455555554444
Q ss_pred CC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047492 390 DG-----STHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKF---EQMKDLVIFALERNIKLRDVTYDKFISALCKAN 461 (806)
Q Consensus 390 ~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 461 (806)
.+ +.++|...|++..+.|... .+..|...|...+.. .++.+.+......|. ......|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 44 6677888888877765432 444555555544432 345555555555552 334556667777777
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHH
Q 047492 462 KVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN---RADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFL 538 (806)
Q Consensus 462 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 538 (806)
.++++......+.+.-...++..+..|...|...| +.++|++.|++..+.|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~----------------------- 212 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT----------------------- 212 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-----------------------
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-----------------------
Confidence 66555544333333222224447888888888888 8889999998888765222
Q ss_pred HHHHhHhhCCCCChhhHHHHHHhhhc----CCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHH
Q 047492 539 QLLNMQLSHQETNFQIYNFFIDGAGH----VKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIV 614 (806)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 614 (806)
...+..+...|.. .+++++|...|++.. .| ... ++..+..
T Consensus 213 -------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g----~~~------------------a~~~Lg~ 256 (452)
T 3e4b_A 213 -------------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG----YPA------------------SWVSLAQ 256 (452)
T ss_dssp -------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----STH------------------HHHHHHH
T ss_pred -------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----CHH------------------HHHHHHH
Confidence 1112223333322 267788888888776 22 111 2455555
Q ss_pred H-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHhCCCCCCchhHHHHHHHh
Q 047492 615 G-L--CKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTK-----NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHA 686 (806)
Q Consensus 615 ~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 686 (806)
. + ...+++++|...|++..+.| +...+..+...|. .| ++++|...+++.. .-++.....+...|
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 5 3 45778888888888887766 5555666666665 44 7888888877765 22344555555555
Q ss_pred hc----cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhc----cccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-
Q 047492 687 LK----TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSG----CIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV- 757 (806)
Q Consensus 687 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 757 (806)
.. ..+..+|...++.+... .+......|...|.. ..+..+|...++...+.|.+ +.......+.....
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~ 405 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTP 405 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCH
T ss_pred HCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCH
Confidence 44 33778888887777643 234445566666653 45788888888888887632 22222222222233
Q ss_pred hcHHHHHHHHHHHHHc
Q 047492 758 SEIDHACELFNRMRRK 773 (806)
Q Consensus 758 g~~~~A~~~~~~m~~~ 773 (806)
++.++|..+.++....
T Consensus 406 ~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 406 AQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6777888777766543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=122.03 Aligned_cols=231 Identities=9% Similarity=-0.058 Sum_probs=180.4
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMRE 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 631 (806)
+..+......+...|++++|...|++..+. .|+... ++..+...|...|++++|+..+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~ 62 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPY------------------IYNRRAVCYYELAKYDLAQKDIET 62 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCST------------------THHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHH------------------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445566677888899999999999998864 344332 378888899999999999999999
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcc
Q 047492 632 MRHNGMYPS--MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 632 m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
..+.+-.++ ...|..+...+...|++++|.+.+++..+.... +...+..+...+...|+.++|...++++....|.+
T Consensus 63 a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 988432222 334788888899999999999999998886533 45678888888999999999999999998888888
Q ss_pred hhhHHHHH-HhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hc---HHHHHHHHHHHHHcC-CCCC-----
Q 047492 710 ISLLGQLI-GVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SE---IDHACELFNRMRRKG-YEPD----- 778 (806)
Q Consensus 710 ~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~---~~~A~~~~~~m~~~g-~~p~----- 778 (806)
..++..+. ..|. .+++++|+..++++.+. .+.+...|..+..++.. |+ +++|...+++..+.. -.|+
T Consensus 142 ~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 142 PKVFYELGQAYYY-NKEYVKADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 88888888 5554 45999999999999986 34456777778888877 77 888888888887652 2233
Q ss_pred -hhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 779 -QWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 779 -~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
..++..+...+.+.|++++|.+++++.
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 246777888899999999999998864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-11 Score=127.93 Aligned_cols=342 Identities=9% Similarity=-0.035 Sum_probs=198.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc---chHHHHHHHHHhcCCCCccchHHHHHHhhcc
Q 047492 137 LVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF---DAVAVVSKQISMRGFENDVTRTIMLKCLCKQ 213 (806)
Q Consensus 137 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 213 (806)
+...+.+.|++++|+.+|++..+.| ++.++..+-..+...|+. ++|..+|+...+. +...+..|...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 4455666777888888888776665 333444455555556666 7777777777754 445555555544444
Q ss_pred C-----CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHH---HHHHHHhhhCCCCCcchhhHHHHHHHHHHcC
Q 047492 214 K-----KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQA---GKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG 285 (806)
Q Consensus 214 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (806)
+ ++++|.+.|++..+.|. + ..+..|...|...+..+.+ .+.+...... + +...+..+...|...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCC
Confidence 3 67778888887777654 2 2556666666665544333 3333333322 2 2335556666666666
Q ss_pred CH----HHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc---
Q 047492 286 RL----DLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKEN---RLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKA--- 355 (806)
Q Consensus 286 ~~----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--- 355 (806)
.+ +.+..+++.... .+...+..+...|...| +.++|++.|++..+.|. ++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~-----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN-----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT-----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred CcccCHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 43 334444444332 23336777777777788 78888888888877764 3444445555566443
Q ss_pred -CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----
Q 047492 356 -GMVDVAIELYKSRSEFGLSPNGIVYNYLINS-L--CGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDG----- 426 (806)
Q Consensus 356 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----- 426 (806)
++.++|.+.|+... . -+...+..|... + ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 57888888888876 3 344455555554 3 45778888888888887765 5566666666665 44
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCH
Q 047492 427 KFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK----SNRA 498 (806)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 498 (806)
++++|..+|++.. .-+...+..|...|.. ..+.++|..+|+...+.+ +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 7888888887766 3355566666666665 337888888888877665 34455566666654 4578
Q ss_pred HHHHHHHHHHHHCC
Q 047492 499 DIAARLLVEMEENG 512 (806)
Q Consensus 499 ~~a~~~~~~m~~~~ 512 (806)
.+|...|+...+.|
T Consensus 375 ~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 375 LNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCC
Confidence 88888888887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-11 Score=117.19 Aligned_cols=235 Identities=10% Similarity=0.028 Sum_probs=131.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHH
Q 047492 276 VWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD--GVTMNTVLCFFC 353 (806)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~ 353 (806)
.....+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+.+..++ ...|..+...|.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34444445555555555555544311 12233555555566666666666666666555321111 112555566666
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047492 354 KAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKD 433 (806)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 433 (806)
..|++++|.+.|+...+.. +.+..++..+...|...|++++|.+.|++..+... .+...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655532 23345666666666666666666666666655422 234444444423333446777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhcC-CCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 047492 434 LVIFALERNIKLRDVTYDKFISALCKANK---VEVGYLIHSELSRMN-KVAS------ENTYIQLIHGFNKSNRADIAAR 503 (806)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~~a~~ 503 (806)
.++.+.+.. +.+...+..+...+...|+ .++|...+++..+.. ..|+ ...|..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777666654 3345555666666666666 666666666655432 1111 2456677777778888888888
Q ss_pred HHHHHHHCCCCCCH
Q 047492 504 LLVEMEENGHKPTR 517 (806)
Q Consensus 504 ~~~~m~~~~~~p~~ 517 (806)
.|++..+ +.|+.
T Consensus 243 ~~~~al~--~~p~~ 254 (272)
T 3u4t_A 243 AWKNILA--LDPTN 254 (272)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCccH
Confidence 8888776 34543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-11 Score=115.33 Aligned_cols=199 Identities=15% Similarity=0.043 Sum_probs=126.1
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 308 FRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSL 387 (806)
Q Consensus 308 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 387 (806)
..+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 334445555556666666666666555532 1245556666666666666666666666665532 23455666666666
Q ss_pred HcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047492 388 CGDGSTHEAYEVLKNSIDHGLFP-GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVG 466 (806)
Q Consensus 388 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 466 (806)
...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66777777777777666522233 34455666666677777777777777766654 34556667777777777777777
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 467 YLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
...++...+..+. +...+..+...+...|++++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777665443 566677777777777777777777777766
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=7.4e-12 Score=128.08 Aligned_cols=228 Identities=11% Similarity=0.029 Sum_probs=192.5
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCC-hHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMK-ANLAWGFMR 630 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~ 630 (806)
...|+.+...+.+.|++++|+..|++..+. .|+..+ +|..+..++...|+ +++|+..|+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~------------------a~~~~g~~l~~~g~d~~eAl~~~~ 156 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYT------------------VWHFRRVLLKSLQKDLHEEMNYIT 156 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHH------------------HHHHHHHHHHHcccCHHHHHHHHH
Confidence 456888888899999999999999999854 576654 58889999999997 999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcc
Q 047492 631 EMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 631 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
+.++. .| +...|..+..++...|++++|+..++++++... -+...+..+...+...|++++|+..++++....|.+
T Consensus 157 ~al~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 157 AIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99984 45 677889999999999999999999999998753 355678888889999999999999999999999999
Q ss_pred hhhHHHHHHhhhc-cccchhh-----HHHHHHHHHcCCCCChhhHHHHHHHHhh-h--cHHHHHHHHHHHHHcCCCCChh
Q 047492 710 ISLLGQLIGVFSG-CIKVSQD-----IEGLQKMIEQCFPLDTYTYNILLRRLSV-S--EIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 710 ~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~-g--~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
...|+.+..+|.. .|..++| +..++++.+. .+.+...|+.+...+.. | ++++|++.+.++ ..-..+..
T Consensus 234 ~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~ 310 (382)
T 2h6f_A 234 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHH
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHH
Confidence 9999999999998 6666888 5889999986 35567889999999988 7 689999999888 22334567
Q ss_pred hHHHHHhhhhccC--------C-HHHHHHHHHhh
Q 047492 781 TFDILKCGLYNCL--------R-TDEAERRLEEM 805 (806)
Q Consensus 781 ~~~~l~~~~~~~g--------~-~~eA~~~l~~m 805 (806)
.+..+..+|.+.| + .++|+++++++
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 7888999998874 3 58999998875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-12 Score=126.01 Aligned_cols=219 Identities=14% Similarity=-0.033 Sum_probs=102.6
Q ss_pred CChhhHHHHHHHHhhcCCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHH
Q 047492 145 GKPDIALHLFGKMRFQGMD--L-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVE 221 (806)
Q Consensus 145 ~~~~~A~~~~~~m~~~~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 221 (806)
|++++|+..|+++.+.... | +..+|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4555566666655543211 1 233455555555555666666666665555555455555555555555566666665
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcC
Q 047492 222 YFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLE 301 (806)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 301 (806)
.|++..+... .+..++..+...|.+.|++++|...|+++... .|+.......+..+...|++++|...+++.....
T Consensus 99 ~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 99 AFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555555432 23445555555555555555555555555443 2222222222233334455555555554433211
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 302 GYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISP---DGVTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 302 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
.++...+ .++..+...++.++|...+++........ +...+..+...|.+.|++++|...|++..+
T Consensus 175 --~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 --DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp --CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1122222 23344444444455555554443321100 123344444444444555555555544443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=8.3e-09 Score=112.80 Aligned_cols=445 Identities=11% Similarity=-0.009 Sum_probs=235.7
Q ss_pred CChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCC---HHHHHH
Q 047492 145 GKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKK---IDEAVE 221 (806)
Q Consensus 145 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~ 221 (806)
....+-+..|++....+ .-|..+|..++..+.+.+.++.+..+|+.+....+.....|...+..-.+.|+ ++.+.+
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34555565666665553 23777888888888777888888888888887766666677777777777777 888888
Q ss_pred HHHHhHhCC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHhhhCCCC-Ccc-hhhHHHHHHHHH--------
Q 047492 222 YFQQLVSGR-ECVSGFMIGIVVDALCKNSRF--------EQAGKLLEDFKDRDDV-VKL-EKAYDVWLRNLV-------- 282 (806)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~~~~-~~~-~~~~~~li~~~~-------- 282 (806)
+|+..+... ..|++..|...+....+.++. +.+.++|+.....-|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888877654 135666777776665555443 2334666654443244 333 356666665432
Q ss_pred -HcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHH
Q 047492 283 -RAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVA 361 (806)
Q Consensus 283 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 361 (806)
..++++.+..+|++... .|... +..+-..|. ...+. + +..+...++.- ...+++.|
T Consensus 205 eeq~~~~~~R~iy~raL~----iP~~~-~~~~w~~Y~-------------~fe~~-~--~~~~a~~~~~e--~~~~y~~A 261 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC----QPMDC-LESMWQRYT-------------QWEQD-V--NQLTARRHIGE--LSAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT----SCCSS-HHHHHHHHH-------------HHHHH-H--CTTTHHHHHHH--HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHh----CccHH-HHHHHHHHH-------------HHHHh-c--CcchHHHHHHH--hhHHHHHH
Confidence 23345666666666653 12211 111111110 00000 0 00000001100 01123333
Q ss_pred HHHHHHHHh--CCCC---------------C-----C---HHHHHHHHHHHHcCC-------ChhHHHHHHHHHHhCCCC
Q 047492 362 IELYKSRSE--FGLS---------------P-----N---GIVYNYLINSLCGDG-------STHEAYEVLKNSIDHGLF 409 (806)
Q Consensus 362 ~~~~~~~~~--~~~~---------------~-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~ 409 (806)
...+.++.. .++. | + ...|...+.---..+ ..+.+..+|++....-.
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p- 340 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC- 340 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-
Confidence 444433221 0110 1 0 133444444322222 12234556666665422
Q ss_pred CCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCC---------C
Q 047492 410 PGKKTLSILADALCRDGKFEQMK-DLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNK---------V 479 (806)
Q Consensus 410 p~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~ 479 (806)
-+...|-..+.-+...|+.++|. +++++.... ++.+...+...+...-+.|+++.|.++|+.+..... .
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 25666666666667777777775 888777764 345555666677777777888888888777665310 1
Q ss_pred C------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhh
Q 047492 480 A------------SENTYIQLIHGFNKSNRADIAARLLVEMEEN-GHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLS 546 (806)
Q Consensus 480 ~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 546 (806)
| ....|...+....+.|..+.|..+|.+..+. +. ....
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~---------------------------- 470 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPD---------------------------- 470 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTH----------------------------
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChH----------------------------
Confidence 2 1235677777777777788888888877764 11 1111
Q ss_pred CCCCChhhHHHHHHhhhcC-CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHH
Q 047492 547 HQETNFQIYNFFIDGAGHV-KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLA 625 (806)
Q Consensus 547 ~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 625 (806)
+|-..+..-.+. ++.+.|..+|+...+. .|+... .|...+......|+.+.|
T Consensus 471 -------lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~------------------~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 471 -------IYLENAYIEYHISKDTKTACKVLELGLKY--FATDGE------------------YINKYLDFLIYVNEESQV 523 (679)
T ss_dssp -------HHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHH------------------HHHHHHHHHHHHTCHHHH
T ss_pred -------HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchH------------------HHHHHHHHHHhCCCHHHH
Confidence 111111111122 3356666666665543 233322 144555555555666666
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 047492 626 WGFMREMRHNGMYP--SMECYEELIKLLCSTKNYDMVVGVMNHLEGHG 671 (806)
Q Consensus 626 ~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 671 (806)
..+|+........+ ....|..++..-.+.|+.+.+.++.+++.+.-
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666542211 23455555555555666666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-10 Score=110.68 Aligned_cols=201 Identities=9% Similarity=0.041 Sum_probs=133.9
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047492 307 VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINS 386 (806)
Q Consensus 307 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 386 (806)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555556666666666666666665532 1245566666666677777777777777666542 2355666667777
Q ss_pred HHcC-CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 047492 387 LCGD-GSTHEAYEVLKNSIDHGLFPG-KKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVE 464 (806)
Q Consensus 387 ~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 464 (806)
+... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777766322232 4566667777777777777777777776654 345667777777788888888
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 465 VGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 465 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+|...++...+..+..+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888887777665523666677777777778888888888877765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-11 Score=115.16 Aligned_cols=130 Identities=13% Similarity=-0.043 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...|...|++++|+..|+++.+.. ..+..++..+...+...|++++|.+.++++.+..+.+..++..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4455555555555555555555555554431 113344444455555555555555555555444433334444444444
Q ss_pred hccCCHHHHHHHHHHhHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECV-SGFMIGIVVDALCKNSRFEQAGKLLEDF 261 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 261 (806)
...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.|++.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444444311111 2233333444444444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-10 Score=110.70 Aligned_cols=220 Identities=8% Similarity=-0.039 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047492 273 AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLK----ENRLMEVFDLFMDMKEGQISPDGVTMNTV 348 (806)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 348 (806)
.+..+...+...|++++|++.|++..+ ..+...+..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 334444444444555555555554443 1123344444455555 555666666665555543 44555555
Q ss_pred HHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 349 LCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG----DGSTHEAYEVLKNSIDHGLFPGKKTLSILAD 420 (806)
Q Consensus 349 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 420 (806)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 666666666666655543 45555555555655 666666666666666543 3445555555
Q ss_pred HHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 047492 421 ALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKVEVGYLIHSELSRMNKVASENTYIQLIHGF 492 (806)
Q Consensus 421 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 492 (806)
.+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 5555 566666666666666553 34455556666666 666666666666665553 245556666666
Q ss_pred Hh----cCCHHHHHHHHHHHHHC
Q 047492 493 NK----SNRADIAARLLVEMEEN 511 (806)
Q Consensus 493 ~~----~~~~~~a~~~~~~m~~~ 511 (806)
.. .+++++|.+.|++..+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHc
Confidence 66 66677777777766653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-11 Score=114.70 Aligned_cols=132 Identities=13% Similarity=0.017 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+....+.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 44555555555666666666666666555441 11344555555555555555555555555555444444444455555
Q ss_pred hhcc-CCHHHHHHHHHHhHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 210 LCKQ-KKIDEAVEYFQQLVSGRECV-SGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 210 ~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
+... |++++|.+.++.+.+.+..| +...+..+...+...|++++|...|+++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555 55555555555544411111 12334444444444444444444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=6.5e-11 Score=121.07 Aligned_cols=243 Identities=11% Similarity=0.029 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK-VEVGYLIHSELSRMNKVASENTYIQLIHGF 492 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 492 (806)
.|..+...+...|++++|...++++++.. +-+...|+.+..++...|+ +++|...+++....++. +...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 34444445555555555555555555544 3344555555555556664 66666666666555544 555666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHH
Q 047492 493 NKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLAR 572 (806)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 572 (806)
...|++++|+..|+++++ +.| .+...|..+..++.+.|++++|+
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP----------------------------------~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDA----------------------------------KNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCT----------------------------------TCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHccCHHHHHHHHHHHHH--hCc----------------------------------cCHHHHHHHHHHHHHcCChHHHH
Confidence 666666666666666554 122 23444555555556666666666
Q ss_pred HHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHh-cCChHHH-----HHHHHHHHhCCCCC-CHHHHH
Q 047492 573 AVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCK-AMKANLA-----WGFMREMRHNGMYP-SMECYE 645 (806)
Q Consensus 573 ~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A-----~~~~~~m~~~g~~p-~~~~~~ 645 (806)
..|+++.+. .|+... +|+.+..++.. .|..++| +..|++.++ +.| +...|.
T Consensus 221 ~~~~~al~l--~P~~~~------------------a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~ 278 (382)
T 2h6f_A 221 QYVDQLLKE--DVRNNS------------------VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWN 278 (382)
T ss_dssp HHHHHHHHH--CTTCHH------------------HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHH
T ss_pred HHHHHHHHh--CCCCHH------------------HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHH
Confidence 666666643 343322 36666666666 4444555 366666665 334 345566
Q ss_pred HHHHHHHcCC--ChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc--------c-HHHHHHHHHhh-hhccCcchhhH
Q 047492 646 ELIKLLCSTK--NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR--------D-LYEAWIRLRGM-LINEQSKISLL 713 (806)
Q Consensus 646 ~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~-~~~a~~~~~~~-~~~~~~~~~~~ 713 (806)
.+..++...| ++++|.+.+..+ +. ...+...+..+...+.+.| + .++|...++++ ....|.....|
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 6666666666 466777766665 22 1223344444554444432 1 35555555555 34444444444
Q ss_pred HHHHH
Q 047492 714 GQLIG 718 (806)
Q Consensus 714 ~~l~~ 718 (806)
..+..
T Consensus 357 ~~~~~ 361 (382)
T 2h6f_A 357 RYIGR 361 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-09 Score=107.79 Aligned_cols=221 Identities=10% Similarity=-0.010 Sum_probs=120.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHH----cCCHHHHHHHHHhhhhcCCCCCCcccHHH
Q 047492 237 MIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVR----AGRLDLALEFLKSKNSLEGYVPEVFRFNF 312 (806)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (806)
++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|++.|++..+. + +...+..
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~ 79 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHHH
Confidence 3344444444444444444444444331 112334444444444 45555555555544431 1 3444444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 313 LVSRLLK----ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384 (806)
Q Consensus 313 li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 384 (806)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 556666666666555543 44555555555655 666666666666665543 344555555
Q ss_pred HHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047492 385 NSLCG----DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISA 456 (806)
Q Consensus 385 ~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 456 (806)
..|.. .+++++|...|++..+.+ +...+..+...+.. .+++++|.+.+++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 55555 666666666666666553 34555556666666 666666666666666654 14455556666
Q ss_pred HHh----cCChhHHHHHHHHHhhcC
Q 047492 457 LCK----ANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 457 ~~~----~~~~~~a~~~~~~~~~~~ 477 (806)
|.+ .+++++|.+.++...+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666 667777777776666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-11 Score=115.67 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 047492 312 FLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG 391 (806)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 391 (806)
.+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 33333334444444444444333321 1123333334444444444444444444433321 123333444444444444
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047492 392 STHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHS 471 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 471 (806)
++++|.+.++++.+... .+...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...++
T Consensus 140 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444433221 123333334444444444444444444443332 2233334444444444444444444444
Q ss_pred HHhh
Q 047492 472 ELSR 475 (806)
Q Consensus 472 ~~~~ 475 (806)
.+.+
T Consensus 218 ~~~~ 221 (243)
T 2q7f_A 218 KAID 221 (243)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 4433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-11 Score=114.53 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=161.5
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384 (806)
Q Consensus 305 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 384 (806)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345567777788889999999999999998753 2467888889999999999999999999988754 35678899999
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 047492 385 NSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVE 464 (806)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 464 (806)
..+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999987653 367788899999999999999999999998875 557788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047492 465 VGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTR 517 (806)
Q Consensus 465 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (806)
+|...++...+..+. +...+..+...|...|++++|...++++.+ ..|+.
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~ 226 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID--IQPDH 226 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcch
Confidence 999999999887654 788899999999999999999999999987 34543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-11 Score=119.45 Aligned_cols=244 Identities=11% Similarity=-0.033 Sum_probs=187.4
Q ss_pred CCChhHHHHHHHHhHhcc---CCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchH
Q 047492 109 AKLTPLMVDFLENYKKDR---YYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAV 185 (806)
Q Consensus 109 ~~~~~~~~~~l~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 185 (806)
.++++.|...++.+.... .+.+..++..+...|...|++++|+..|+++.+.. +.+..+|..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 466778888888877753 23467888899999999999999999999998763 23577899999999999999999
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 047492 186 AVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRD 265 (806)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 265 (806)
...|+++.+..+.+..++..+...+...|++++|.+.++++.+... +.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 9999999998888888999999999999999999999999987653 3334444555567779999999999877664
Q ss_pred CCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047492 266 DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-----VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISP 340 (806)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 340 (806)
.+++...+ .++..+...++.++|++.++..... .|+ ...+..+...+...|++++|...|++..+.. |
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 23333333 4777778888899999999887641 222 4678888899999999999999999998753 4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHH
Q 047492 341 DGVTMNTVLCFFCKAGMVDVAIELY 365 (806)
Q Consensus 341 ~~~~~~~ll~~~~~~g~~~~a~~~~ 365 (806)
+. +.....++...|++++|.+-+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 333355666778888877665
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-08 Score=110.52 Aligned_cols=480 Identities=8% Similarity=-0.007 Sum_probs=293.4
Q ss_pred CcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC---HHHHHHH
Q 047492 181 CFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSR---FEQAGKL 257 (806)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 257 (806)
.....+..++.....++.+..+|..++..+.+.+.++.+..+|+.+...-+ .....|...+..-.+.|. ++.+.++
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 345566667777777777888999999999999999999999999987643 566788888888888888 9999999
Q ss_pred HHHhhhCCCCCcchhhHHHHHHHHHHcCCH--------HHHHHHHHhhhhcCCC-CCC-cccHHHHHHHHHh--------
Q 047492 258 LEDFKDRDDVVKLEKAYDVWLRNLVRAGRL--------DLALEFLKSKNSLEGY-VPE-VFRFNFLVSRLLK-------- 319 (806)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~li~~~~~-------- 319 (806)
|++........|+...|...+....+.++. +.+.++|+.....-|. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999887522248888888888777666553 3345777777665666 554 3566666654432
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 320 -ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYE 398 (806)
Q Consensus 320 -~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 398 (806)
.++++.+.++|+..+......-..+|..... +.+.-+...+.+++.+. ..+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHH
Confidence 3346677788887775211111122221111 11110111122222211 112333334
Q ss_pred HHHHHHh--CCC---C------------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCC
Q 047492 399 VLKNSID--HGL---F------------P-----G---KKTLSILADALCRDG-------KFEQMKDLVIFALERNIKLR 446 (806)
Q Consensus 399 ~~~~m~~--~~~---~------------p-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~ 446 (806)
.+.++.. .++ . | + ...|...+.---..+ ..+.+..+|++.+... +..
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCC
Confidence 4433221 111 0 1 0 123444443322222 1234567788887763 567
Q ss_pred HHHHHHHHHHHHhcCChhHHH-HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047492 447 DVTYDKFISALCKANKVEVGY-LIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIR 525 (806)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 525 (806)
...|...+..+...|+.++|. ++++......+ .+...|-.++....+.|++++|.++|+++.+.. +. .+..+-.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l--~~--~~~~~~~ 417 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRI--HL--DLAALME 417 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH--HHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HH--Hhhhhhh
Confidence 888988888888999999996 99999887554 377778888999999999999999999987621 00 0000000
Q ss_pred HHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCC
Q 047492 526 CLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIP 605 (806)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~ 605 (806)
. ............ .....+|...++...+.|+.+.|..+|.+..+. .|....
T Consensus 418 ~---~p~~~~~~~~~~-------~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~--~~~~~~---------------- 469 (679)
T 4e6h_A 418 D---DPTNESAINQLK-------SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL--KKLVTP---------------- 469 (679)
T ss_dssp H---STTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT--GGGSCT----------------
T ss_pred c---cCcchhhhhhhc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCCh----------------
Confidence 0 000000000000 002335777777777888999999999998865 111110
Q ss_pred chhHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CchhHHHH
Q 047492 606 RKLYNTLIVGLCK-AMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV--TSFIGNTL 682 (806)
Q Consensus 606 ~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 682 (806)
..|...+..-.+ .++++.|..+|+...+. ..-+...+..+++.....|+.+.|..+|+........+ ...++...
T Consensus 470 -~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 470 -DIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp -HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 013322222223 34589999999998885 34466667788888888999999999999998765432 23455555
Q ss_pred HHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 683 LLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 683 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
+..-.+.|+.+.+.++.+++....|.+ .....+++-|
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~~P~~-~~~~~f~~ry 584 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEKFPEV-NKLEEFTNKY 584 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHSTTC-CHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-cHHHHHHHHh
Confidence 555566788888888888877666654 2333444444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-11 Score=128.10 Aligned_cols=306 Identities=10% Similarity=-0.083 Sum_probs=217.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 047492 444 KLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVAS----ENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRAL 519 (806)
Q Consensus 444 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 519 (806)
......+......+...|++++|...++...+..+. + ...|..+...|...|++++|...+++..+..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 77 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------- 77 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------
Confidence 344455666777788888888888888888776443 3 3567788888999999999999998876410
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc-cCcchhHHHHHHHH
Q 047492 520 HRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV-PQLGSNILMLQSYL 598 (806)
Q Consensus 520 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~~~~~~~ 598 (806)
...++ .+....++..+...|...|++++|...+++..+.... ++...
T Consensus 78 --------~~~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------- 125 (406)
T 3sf4_A 78 --------RTIGD---------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------- 125 (406)
T ss_dssp --------HHTTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---------
T ss_pred --------Hhccc---------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc---------
Confidence 00000 0112345777888899999999999999987743111 11000
Q ss_pred hhhCCCCchhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHc
Q 047492 599 KRKNGIPRKLYNTLIVGLCKAMK--------------------ANLAWGFMREMRHN----GMYP-SMECYEELIKLLCS 653 (806)
Q Consensus 599 ~~~~~~~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~ 653 (806)
...++..+...|...|+ +++|...+++..+. +..| ...++..+...+..
T Consensus 126 ------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 126 ------EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp ------HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 01137888899999999 99999999887652 2122 23467788888999
Q ss_pred CCChhHHHHHHHHHHhCCCCC-C----chhHHHHHHHhhccccHHHHHHHHHhhhhccCcc------hhhHHHHHHhhhc
Q 047492 654 TKNYDMVVGVMNHLEGHGRQV-T----SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK------ISLLGQLIGVFSG 722 (806)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 722 (806)
.|++++|...+++..+..... + ...+..+...+...|+.++|...++++....+.. ..++..+...|..
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 999999999999887543221 1 2367778888999999999999999987433322 5577889999999
Q ss_pred cccchhhHHHHHHHHHcCCC-CC----hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc----CCCC-ChhhHHHHHhhhhc
Q 047492 723 CIKVSQDIEGLQKMIEQCFP-LD----TYTYNILLRRLSV-SEIDHACELFNRMRRK----GYEP-DQWTFDILKCGLYN 791 (806)
Q Consensus 723 ~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~-g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~ 791 (806)
.|++++|+..++++.+.... ++ ..++..+...|.. |++++|...+++..+. |..+ ...++..+..++..
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 99999999999998874211 12 4577788888888 9999999999987644 2222 23456667777777
Q ss_pred cCCH
Q 047492 792 CLRT 795 (806)
Q Consensus 792 ~g~~ 795 (806)
.|+.
T Consensus 360 ~g~~ 363 (406)
T 3sf4_A 360 LGLS 363 (406)
T ss_dssp HHTT
T ss_pred hhHh
Confidence 6664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-11 Score=127.34 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCC-h----hhHHHHHHHHHhcCCcchHHHHHHHHHhcC------CCCccch
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLD-D----YAYHVLLNALVEQGCFDAVAVVSKQISMRG------FENDVTR 203 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~ 203 (806)
..+...+...|++++|+..|+++.+. .|+ . .+|..+...+...|++++|...+++..... +....++
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 34445555666666666666666554 222 1 345555556666666666666666554431 1122355
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHhCC-----CCCCHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHh
Q 047492 204 TIMLKCLCKQKKIDEAVEYFQQLVSGR-----ECVSGFMIGIVVDALCKNSR-----------------FEQAGKLLEDF 261 (806)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~ 261 (806)
..+...|...|++++|...+++..+.. ......++..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 666666666667766666666554321 11223456666667777777 66666666554
Q ss_pred hhC----CCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 262 KDR----DDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 262 ~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
... .........+..+...+...|++++|++.+++..
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 321 0011112344555555555666666665555543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-11 Score=124.71 Aligned_cols=276 Identities=12% Similarity=-0.041 Sum_probs=177.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSRMNKVASE----NTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVI 524 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 524 (806)
.+..+...+...|++++|...+++..+..+. +. ..|..+...|...|++++|+..+++..+..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 3445566777888888888888888776544 33 467888888999999999999998876520
Q ss_pred HHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC----CCccCcchhHHHHHHHHhh
Q 047492 525 RCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS----GLVPQLGSNILMLQSYLKR 600 (806)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~~~~~~~~~ 600 (806)
...++ .+....++..+...|...|++++|...|++..+. +-.|...
T Consensus 117 ---~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------ 166 (411)
T 4a1s_A 117 ---KSMND---------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG------------ 166 (411)
T ss_dssp ---HHTTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH------------
T ss_pred ---HHccC---------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH------------
Confidence 00000 0113455777888899999999999999987643 1122211
Q ss_pred hCCCCchhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChh
Q 047492 601 KNGIPRKLYNTLIVGLCKAMK-----------------ANLAWGFMREMRHN----GMYP-SMECYEELIKLLCSTKNYD 658 (806)
Q Consensus 601 ~~~~~~~~~~~li~~~~~~~~-----------------~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~ 658 (806)
.++..+...|...|+ +++|+..+++..+. +-.+ ...++..+...+...|+++
T Consensus 167 ------~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 167 ------RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 247888999999999 99999998886652 1111 2346777888888999999
Q ss_pred HHHHHHHHHHhCCCCC-C----chhHHHHHHHhhccccHHHHHHHHHhhhhccC------cchhhHHHHHHhhhccccch
Q 047492 659 MVVGVMNHLEGHGRQV-T----SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQ------SKISLLGQLIGVFSGCIKVS 727 (806)
Q Consensus 659 ~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 727 (806)
+|.+.+++..+..... + ...+..+...+...|+.++|...++++....+ ....++..+...|...|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999988876543211 1 12455555666666666666666666653222 11344555666666666666
Q ss_pred hhHHHHHHHHHcCCC-CC----hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 728 QDIEGLQKMIEQCFP-LD----TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 728 ~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
+|+..++++.+.... ++ ..+|..+...|.. |++++|...|++..+.
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 666666665543100 01 2345555555656 6666666666665543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-11 Score=125.94 Aligned_cols=61 Identities=10% Similarity=-0.086 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC-----hhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD-----DYAYHVLLNALVEQGCFDAVAVVSKQIS 193 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (806)
...+......+...|++++|+..|++..+. .|+ ..+|..+...+...|++++|...+++..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334444455555556666666666555544 221 1234444445555555555555555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=118.47 Aligned_cols=280 Identities=10% Similarity=-0.060 Sum_probs=165.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRMNKVAS----ENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIR 525 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 525 (806)
+......+...|++++|...+++..+..+. + ...+..+...+...|++++|...+++..+..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------
Confidence 344556677888888888888888776543 3 3567788888999999999999988876510
Q ss_pred HHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc-cCcchhHHHHHHHHhhhCCC
Q 047492 526 CLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV-PQLGSNILMLQSYLKRKNGI 604 (806)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~~ 604 (806)
...++ .+....++..+...|...|++++|...+++..+.... ++...
T Consensus 74 --~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------- 121 (338)
T 3ro2_A 74 --RTIGD---------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------- 121 (338)
T ss_dssp --HHHTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------
T ss_pred --hcccc---------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH---------------
Confidence 00000 0112445777888899999999999999987643111 11100
Q ss_pred CchhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhH
Q 047492 605 PRKLYNTLIVGLCKAMK--------------------ANLAWGFMREMRHN----GMYP-SMECYEELIKLLCSTKNYDM 659 (806)
Q Consensus 605 ~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~ 659 (806)
...++..+...|...|+ +++|...+++..+. +..+ ...++..+...+...|++++
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (338)
T 3ro2_A 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 01137788889999999 89999888876542 1111 23456777777888888888
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 660 VVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 660 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
|.+.+++..+....... .+....++..+...|...|++++|+..+++..+.
T Consensus 202 A~~~~~~a~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 202 AVIAHEQRLLIAKEFGD-----------------------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHHHHHHHTC-----------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-----------------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888877543211000 0001123444445555555555555555555432
Q ss_pred CCC-CC----hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc----CCCC-ChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 740 CFP-LD----TYTYNILLRRLSV-SEIDHACELFNRMRRK----GYEP-DQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 740 ~~~-~~----~~~~~~li~~~~~-g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
... ++ ..++..+...|.. |++++|...+++.... +-.+ ...++..+..++.+.|++++|.+++++
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 100 11 3344555555555 6666666655555432 1111 122444555556666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.8e-11 Score=120.13 Aligned_cols=275 Identities=12% Similarity=-0.012 Sum_probs=138.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC-----hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC------CCccc
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDLD-----DYAYHVLLNALVEQGCFDAVAVVSKQISMRGF------ENDVT 202 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~ 202 (806)
+......+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|...+++...... ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 334455666677777777777777665 232 24566666667777777777777766554311 12235
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhCCCC-C----CHHhHHHHHHHHHhcCC--------------------HHHHHHH
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSGREC-V----SGFMIGIVVDALCKNSR--------------------FEQAGKL 257 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~--------------------~~~A~~~ 257 (806)
+..+...+...|++++|.+.+++..+.... + ...++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 666666677777777777777665432110 1 12356666666666777 6666666
Q ss_pred HHHhhhC----CCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 258 LEDFKDR----DDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDM 333 (806)
Q Consensus 258 ~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (806)
+++.... .........+..+...+...|++++|.+.+++........++.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------------- 219 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------------------- 219 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh--------------------------
Confidence 6554321 0001112234444444555555555555554433210000000
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-
Q 047492 334 KEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF----GLSP-NGIVYNYLINSLCGDGSTHEAYEVLKNSIDHG- 407 (806)
Q Consensus 334 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~- 407 (806)
.....++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 220 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 220 -----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 001123444445555555555555555544321 0000 02344555555556666666666655544211
Q ss_pred ---C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047492 408 ---L-FPGKKTLSILADALCRDGKFEQMKDLVIFALER 441 (806)
Q Consensus 408 ---~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (806)
. .....++..+...+...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0 001234555556666666666666666665543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.4e-10 Score=110.57 Aligned_cols=215 Identities=10% Similarity=-0.005 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh
Q 047492 569 DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLC-------KAMKA-------NLAWGFMREMRH 634 (806)
Q Consensus 569 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~A~~~~~~m~~ 634 (806)
++|..+|++.... .|+... .|..++..+. +.|++ ++|..+|++..+
T Consensus 33 ~~a~~~~~~al~~--~p~~~~------------------~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~ 92 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPD------------------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 92 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHH------------------HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH--cCCCHH------------------HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH
Confidence 6788899988853 455443 3666666554 45876 899999999987
Q ss_pred CCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhH
Q 047492 635 NGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLL 713 (806)
Q Consensus 635 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 713 (806)
. +.| +...|..+...+.+.|++++|.++++++.+........++..++..+.+.|+.++|...++++....|.+...+
T Consensus 93 ~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 93 T-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp T-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred H-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3 244 55688889999999999999999999998854321112788888888899999999999999988777776666
Q ss_pred HHHHHhhh-ccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcC-CCC--ChhhHHHHHhh
Q 047492 714 GQLIGVFS-GCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKG-YEP--DQWTFDILKCG 788 (806)
Q Consensus 714 ~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~ 788 (806)
...+.... ..|+.++|+.+|+++.+. .+.+...|..++..+.. |++++|..+|++..... +.| ....|..++..
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 55544432 369999999999999987 45678889999999988 99999999999999873 455 35678888888
Q ss_pred hhccCCHHHHHHHHHhh
Q 047492 789 LYNCLRTDEAERRLEEM 805 (806)
Q Consensus 789 ~~~~g~~~eA~~~l~~m 805 (806)
+.+.|+.++|..+++++
T Consensus 251 ~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 251 ESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 89999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.27 E-value=8.8e-10 Score=100.94 Aligned_cols=170 Identities=15% Similarity=0.018 Sum_probs=133.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 341 DGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILAD 420 (806)
Q Consensus 341 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 420 (806)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45677778888888888888888888877643 345677788888888888888888888887765433 5666777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047492 421 ALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADI 500 (806)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 500 (806)
.+...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++..+.++. +...|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 7888888888888888877765 556777888888888899999999998888887665 77888888899999999999
Q ss_pred HHHHHHHHHHCCCCCC
Q 047492 501 AARLLVEMEENGHKPT 516 (806)
Q Consensus 501 a~~~~~~m~~~~~~p~ 516 (806)
|++.|++..+ +.|+
T Consensus 160 A~~~~~~al~--~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALE--KEEK 173 (184)
T ss_dssp HHHHHHHHHH--TTHH
T ss_pred HHHHHHHHHh--CCcc
Confidence 9999998877 3454
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-10 Score=121.34 Aligned_cols=201 Identities=11% Similarity=-0.077 Sum_probs=168.5
Q ss_pred hCCCCChhhHHHHHHhhhcCCCh-HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHH
Q 047492 546 SHQETNFQIYNFFIDGAGHVKRP-DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANL 624 (806)
Q Consensus 546 ~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 624 (806)
...+.+...+..+...|...|++ ++|++.|++..+. .|+... +|..+...|.+.|++++
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~------------------a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVE------------------AWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHHTCHHH
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHH------------------HHHHHHHHHHHcCCHHH
Confidence 33445777888899999999999 9999999998854 455432 48899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---------CChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcc------
Q 047492 625 AWGFMREMRHNGMYPSMECYEELIKLLCST---------KNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKT------ 689 (806)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 689 (806)
|...|++..+ +.|+...+..+..+|... |++++|.+.+++..+... .+...+..+...+...
T Consensus 156 A~~~~~~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 156 AHTCFSGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999998 457778888899999999 999999999999988753 3456777788888888
Q ss_pred --ccHHHHHHHHHhhhhccC---cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH
Q 047492 690 --RDLYEAWIRLRGMLINEQ---SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA 763 (806)
Q Consensus 690 --~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A 763 (806)
|++++|...++++....| .+...+..+..+|...|++++|+..|+++.+. .+.+...+..+...+.. |++++|
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998777 78889999999999999999999999999986 35566678888888888 999999
Q ss_pred HHHHHHH
Q 047492 764 CELFNRM 770 (806)
Q Consensus 764 ~~~~~~m 770 (806)
++.+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 8765443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.2e-10 Score=110.27 Aligned_cols=204 Identities=12% Similarity=-0.001 Sum_probs=162.3
Q ss_pred CCChhhHHHHHHhhh-------cCCCh-------HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHH
Q 047492 549 ETNFQIYNFFIDGAG-------HVKRP-------DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIV 614 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 614 (806)
+.++..|..++..+. +.|++ ++|..+|++..+. +.|+... .|..++.
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~------------------~~~~~~~ 107 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNML------------------LYFAYAD 107 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHH------------------HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHH------------------HHHHHHH
Confidence 335555555555543 35775 8999999999852 3565543 4888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh-cccc
Q 047492 615 GLCKAMKANLAWGFMREMRHNGMYPS-ME-CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL-KTRD 691 (806)
Q Consensus 615 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 691 (806)
.+.+.|++++|..+|++..+ +.|+ .. .|..+...+.+.|++++|..++++..+.... +...+........ ..|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998 4554 33 7889999999999999999999999887542 3333333322222 3699
Q ss_pred HHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcC-CCC--ChhhHHHHHHHHhh-hcHHHHHHHH
Q 047492 692 LYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQC-FPL--DTYTYNILLRRLSV-SEIDHACELF 767 (806)
Q Consensus 692 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~-g~~~~A~~~~ 767 (806)
.++|...++++....|.+...|..++..+.+.|+.++|+.+|+++.+.. .+| ....|..++..... |+.++|..++
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999889999999999999999999999999999999963 355 35688898988888 9999999999
Q ss_pred HHHHHcC
Q 047492 768 NRMRRKG 774 (806)
Q Consensus 768 ~~m~~~g 774 (806)
+++.+..
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9998763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-10 Score=103.36 Aligned_cols=169 Identities=13% Similarity=0.003 Sum_probs=146.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHH
Q 047492 605 PRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLL 683 (806)
Q Consensus 605 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 683 (806)
++.+|..+...|.+.|++++|+..|++.++. .| +...+..+..+|...|++++|...++........ +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 3446999999999999999999999999984 44 6778889999999999999999999999876543 445666677
Q ss_pred HHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHH
Q 047492 684 LHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDH 762 (806)
Q Consensus 684 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~ 762 (806)
..+...++.+.+...+.++....|.+...+..+...|...|++++|++.|+++.+. .+.+...|..+..+|.. |++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCHHH
Confidence 78888999999999999999888999999999999999999999999999999987 35677889999999999 99999
Q ss_pred HHHHHHHHHHcCCCCCh
Q 047492 763 ACELFNRMRRKGYEPDQ 779 (806)
Q Consensus 763 A~~~~~~m~~~g~~p~~ 779 (806)
|++.|++..+. .|+.
T Consensus 160 A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHhC--CccC
Confidence 99999998864 4543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-10 Score=121.56 Aligned_cols=211 Identities=8% Similarity=-0.135 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCC-CHHHHH
Q 047492 568 PDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKA-NLAWGFMREMRHNGMYP-SMECYE 645 (806)
Q Consensus 568 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p-~~~~~~ 645 (806)
++++...+++... ..|+... .|..+...+...|++ ++|+..|++..+. .| +...|.
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~------------------~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~ 141 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQ------------------ALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWN 141 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHH------------------HHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHH------------------HHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 5666777776653 3343332 488889999999999 9999999999884 44 578899
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcc---------ccHHHHHHHHHhhhhccCcchhhHHHH
Q 047492 646 ELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKT---------RDLYEAWIRLRGMLINEQSKISLLGQL 716 (806)
Q Consensus 646 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~l 716 (806)
.+..+|...|++++|.+.+++..+... +...+..+...+... |++++|...++++....|.+...|..+
T Consensus 142 ~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 142 QLGEVYWKKGDVTSAHTCFSGALTHCK--NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999998764 457888888889999 999999999999999999999999999
Q ss_pred HHhhhcc--------ccchhhHHHHHHHHHcCCC---CChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHH
Q 047492 717 IGVFSGC--------IKVSQDIEGLQKMIEQCFP---LDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDI 784 (806)
Q Consensus 717 ~~~~~~~--------g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (806)
..+|... |++++|+..|+++.+.. + .+...|..+..+|.. |++++|+..|++..+... -+...+..
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~ 297 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQR 297 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 9999998 99999999999999962 3 478889999999999 999999999999987632 25567888
Q ss_pred HHhhhhccCCHHHHHHHHHh
Q 047492 785 LKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 785 l~~~~~~~g~~~eA~~~l~~ 804 (806)
+..++...|+.++|.+.+.+
T Consensus 298 l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999976554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-09 Score=114.08 Aligned_cols=163 Identities=9% Similarity=0.010 Sum_probs=82.9
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCc-----chhhHH
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSG----RECV-SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVK-----LEKAYD 275 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 275 (806)
....+...|++++|.+.+++..+. +..+ ...++..+...|...|+++.|...+++........+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776653 1111 234666677777777777777777766543200011 123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhHH
Q 047492 276 VWLRNLVRAGRLDLALEFLKSKNSLEGYVPE----VFRFNFLVSRLLKENRLMEVFDLFMDMKEG----QI-SPDGVTMN 346 (806)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~ 346 (806)
.+...|...|++++|++.|++......-.++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5555666666666666666554431100011 123444445555555555555555544431 11 12233444
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 047492 347 TVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
.+...|.+.|++++|...+++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555555555555555443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-10 Score=114.38 Aligned_cols=231 Identities=10% Similarity=0.002 Sum_probs=159.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----ChhhHH
Q 047492 277 WLRNLVRAGRLDLALEFLKSKNSLEGYVPE----VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQIS-P-----DGVTMN 346 (806)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~-----~~~~~~ 346 (806)
....+...|++++|++.|++........+| ..++..+...+...|++++|...+++..+.-.. + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444566778888888888776542111122 346677777788888888888888776653110 1 234677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSEF----GLSP-NGIVYNYLINSLCGDGSTHEAYEVLKNSID-----HGLFPGKKTLS 416 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 416 (806)
.+...|...|++++|...|++..+. +-.+ ...++..+...|...|++++|.+.+++..+ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7778888899999999988886542 1111 124677888889999999999999988876 22122456788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhcCCCC-CHHHHHHH
Q 047492 417 ILADALCRDGKFEQMKDLVIFALER----NIKLRDVTYDKFISALCKANK---VEVGYLIHSELSRMNKVA-SENTYIQL 488 (806)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 488 (806)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|..+++.. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888899999999999999887653 111222335667778888888 67777776665 2222 33467788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047492 489 IHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 489 i~~~~~~~~~~~a~~~~~~m~~ 510 (806)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.5e-11 Score=118.35 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=73.6
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc-------CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC----
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ-------GMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRG---- 196 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 196 (806)
+....++..+...|...|++++|+..|+++.+. .......++..+...+...|++++|...+++.....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777888888888888777652 112233456666666667777777777766665431
Q ss_pred ----CCCccchHHHHHHhhccCCHHHHHHHHHHhHhC------CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 047492 197 ----FENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSG------RE-CVSGFMIGIVVDALCKNSRFEQAGKLLEDF 261 (806)
Q Consensus 197 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 261 (806)
+....++..+...+...|++++|.+.+++..+. +. .....++..+...+...|++++|++.|++.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112234555555555555555555555554432 11 112233444444444455555555444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=115.86 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=74.3
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCCc
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSG-------RECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDR------DDVVK 269 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~ 269 (806)
+..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++.... ...+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 344444444444444444444444331 11122334444555555555555555555444321 01122
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHhhhhcC-----CCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 047492 270 LEKAYDVWLRNLVRAGRLDLALEFLKSKNSLE-----GYVP-EVFRFNFLVSRLLKENRLMEVFDLFMDMKEG------Q 337 (806)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 337 (806)
...++..+...+...|++++|.+.+++..... +..| ....+..+...+...|++++|..++++..+. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 23344444444445555555555444443210 1111 1233444455555555555555555554442 1
Q ss_pred CCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 338 ISP-DGVTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 338 ~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
..| ...++..+..+|...|++++|.+.|+++.+
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 223445555555566666666666655543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-08 Score=104.32 Aligned_cols=232 Identities=13% Similarity=-0.036 Sum_probs=116.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCChh----hHHHHHHHHHhcCCcchHHHHHHHHHhcCCC--Cc----cchHHH
Q 047492 137 LVMGYALAGKPDIALHLFGKMRFQGMDLDDY----AYHVLLNALVEQGCFDAVAVVSKQISMRGFE--ND----VTRTIM 206 (806)
Q Consensus 137 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~l 206 (806)
....+...|++++|+..+++.....-..+.. +++.+...+...|++++|...+++....... +. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556777777777777765542111211 3444555566677777777777766554221 11 124555
Q ss_pred HHHhhccCCHHHHHHHHHHhHhC----CCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCc--chhhHHH
Q 047492 207 LKCLCKQKKIDEAVEYFQQLVSG----REC--V-SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDD-VVK--LEKAYDV 276 (806)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~~ 276 (806)
...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++...... ..+ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66666777777777776665532 111 1 223455566666677777777777766543211 001 1234555
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 047492 277 WLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFN-----FLVSRLLKENRLMEVFDLFMDMKEGQISPD---GVTMNTV 348 (806)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l 348 (806)
+...+...|++++|...+++.........+...+. ..+..+...|+.++|...+++.......+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 55556666666666666665543111001111111 112234455666666666555543221110 1123344
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 047492 349 LCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 349 l~~~~~~g~~~~a~~~~~~~ 368 (806)
...+...|++++|...++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-08 Score=106.20 Aligned_cols=171 Identities=14% Similarity=-0.042 Sum_probs=85.8
Q ss_pred CcchhHHHHHHHHH--HhcCChhhHHHHHHHHhhc--CC--CCChhhHHHHHHHHH--hcCCcchHH---------HHHH
Q 047492 128 YHQVRFNDTLVMGY--ALAGKPDIALHLFGKMRFQ--GM--DLDDYAYHVLLNALV--EQGCFDAVA---------VVSK 190 (806)
Q Consensus 128 ~~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~--~~--~p~~~~~~~ll~~~~--~~~~~~~a~---------~~~~ 190 (806)
-|+..+-+.|-.+| .+.+++++|..+++++.+. .. .++...|-.++..-. -.+...... +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45556666666676 7788889998888887542 11 122333444443211 122222222 5555
Q ss_pred HHHhcCCCCc-----cchHHHHHHhhccCCHHHHHHHHHHhHhCCCC-C----CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 191 QISMRGFEND-----VTRTIMLKCLCKQKKIDEAVEYFQQLVSGREC-V----SGFMIGIVVDALCKNSRFEQAGKLLED 260 (806)
Q Consensus 191 ~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (806)
.+.....+.. ..+......+...|++++|...|++..+.... + ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5443221111 11223334455667777777777766543111 1 234556666666667777777666665
Q ss_pred hhhCCCC----Cc-chhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 261 FKDRDDV----VK-LEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 261 ~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
....... .+ ...+++.+...|...|++++|++.|++..
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4432000 11 12344555555555555555555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-08 Score=105.97 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHH
Q 047492 344 TMNTVLCFFCKAGMVDVAIELYKSRSEF----GLSP-NGIVYNYLINSLCGDGSTHEAYEVLKNSID-----HGLFPGKK 413 (806)
Q Consensus 344 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 413 (806)
+++.+..+|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|.+.+++..+ .... ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 3344444444555555555544443321 1000 122444455555555555555555555443 2221 234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhcCCCC-CHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNI----KLRDVTYDKFISALCKANK---VEVGYLIHSELSRMNKVA-SENTY 485 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~ 485 (806)
++..+...+.+.|++++|...+++..+... +.....+..+...+...++ +.+|...++.. +..+ ....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 455555555555555555555555544311 1112233344444444555 44555544442 1111 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 486 IQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 486 ~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
..+...|...|++++|...|++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666677777777777777776654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-08 Score=93.35 Aligned_cols=163 Identities=14% Similarity=0.054 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 344 TMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALC 423 (806)
Q Consensus 344 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 423 (806)
.+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34444555555666666666665554432 23455555666666666666666666666655422 24555666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047492 424 RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAAR 503 (806)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 503 (806)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+..+. +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 6666777776666666553 445566666777777777777777777776665443 56677777777777777777777
Q ss_pred HHHHHHH
Q 047492 504 LLVEMEE 510 (806)
Q Consensus 504 ~~~~m~~ 510 (806)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.05 E-value=5.1e-08 Score=100.80 Aligned_cols=271 Identities=10% Similarity=-0.027 Sum_probs=185.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhccCCcch----hHHHHHHHHHHhcCChhhHHHHHHHHhhcCC-CCCh----hhHH
Q 047492 100 HAIFKLLHCAKLTPLMVDFLENYKKDRYYHQV----RFNDTLVMGYALAGKPDIALHLFGKMRFQGM-DLDD----YAYH 170 (806)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~----~~~~ 170 (806)
......+...|+++.+...++.........+. .+++.+...|...|++++|...+++.....- .++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34445566789999999998887664322222 2566677788889999999999998864311 1122 2356
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCC----C----CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCC----CCHHhH
Q 047492 171 VLLNALVEQGCFDAVAVVSKQISMRGF----E----NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGREC----VSGFMI 238 (806)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 238 (806)
.+...+...|++++|...+++...... + ...++..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677778899999999999998876531 1 1235667888899999999999999987754321 123567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHH-----HHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC--cccHH
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYD-----VWLRNLVRAGRLDLALEFLKSKNSLEGYVPE--VFRFN 311 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 311 (806)
..+...+...|++++|...+++.............+. ..+..+...|++++|...+++........+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7888899999999999999998764311111111122 2334477999999999999988652211111 12456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 312 FLVSRLLKENRLMEVFDLFMDMKEG----QISPDG-VTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
.+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6778889999999999999887642 221122 2455556667778888888887777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9.8e-09 Score=93.90 Aligned_cols=164 Identities=18% Similarity=0.055 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...+...|++++|+..|+++.+.. ..+..++..+...+...|++++|...++.+.+..+.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455566666777777777777777776542 224556666666777777777777777777766555556666666667
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLA 290 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (806)
...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++.... .+.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 777777777777766665433 34455666666666666666666666666543 122344555555556666666666
Q ss_pred HHHHHhhh
Q 047492 291 LEFLKSKN 298 (806)
Q Consensus 291 ~~~~~~~~ 298 (806)
.+.++...
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-09 Score=117.39 Aligned_cols=162 Identities=10% Similarity=0.009 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH 685 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 685 (806)
.+|+.|...|.+.|++++|+..|++.++ +.| +...|..+..+|.+.|++++|++.+++..+... -+...++.+...
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3699999999999999999999999998 455 577889999999999999999999999988753 345678888899
Q ss_pred hhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHH
Q 047492 686 ALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHAC 764 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~ 764 (806)
+...|+.++|...++++....|.+...++.+..+|...|++++|++.|+++.+. .+.+...|..+..++.. |++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 35567889999999999 9999999
Q ss_pred HHHHHHHH
Q 047492 765 ELFNRMRR 772 (806)
Q Consensus 765 ~~~~~m~~ 772 (806)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-08 Score=96.19 Aligned_cols=166 Identities=7% Similarity=-0.139 Sum_probs=140.0
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHH
Q 047492 605 PRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL 684 (806)
Q Consensus 605 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 684 (806)
|+..|......+...|++++|+..|++..+....++...+..+..++...|++++|.+.+++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 345588899999999999999999999998654467777777899999999999999999999987543 5567788888
Q ss_pred HhhccccHHHHHHHHHhhhhccCcch-------hhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC---hhhHHHHHHH
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKI-------SLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD---TYTYNILLRR 754 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~ 754 (806)
.+...|+.++|...++++....|.+. .++..+...+...|++++|+..++++.+. .|+ ...|..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 99999999999999999998888877 55788888889999999999999999986 444 5678888888
Q ss_pred Hhh-hcH---------------------------HHHHHHHHHHHHc
Q 047492 755 LSV-SEI---------------------------DHACELFNRMRRK 773 (806)
Q Consensus 755 ~~~-g~~---------------------------~~A~~~~~~m~~~ 773 (806)
|.. |+. ++|+..|++..+.
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 877 777 7777777777764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6e-09 Score=102.97 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
++..+...|...|++++|..++++..
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-08 Score=110.65 Aligned_cols=163 Identities=14% Similarity=0.017 Sum_probs=87.1
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047492 307 VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINS 386 (806)
Q Consensus 307 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 386 (806)
...|+.+...+.+.|++++|++.|++..+... -+...++.+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44555555666666666666666665555321 134455555555666666666666666555432 2234455555555
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047492 387 LCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVG 466 (806)
Q Consensus 387 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 466 (806)
|.+.|++++|++.|++..+.... +...|..+..++...|++++|.+.|++.++.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 55556666666555555543322 34455555555555555555555555555543 23344555555555555555555
Q ss_pred HHHHHHH
Q 047492 467 YLIHSEL 473 (806)
Q Consensus 467 ~~~~~~~ 473 (806)
.+.+++.
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=104.67 Aligned_cols=165 Identities=13% Similarity=-0.047 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhC------CC-CCCchhHHHHHHHhhccccHHHHHHHHHhhhhc--------
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGH------GR-QVTSFIGNTLLLHALKTRDLYEAWIRLRGMLIN-------- 705 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------- 705 (806)
..++..+...|...|++++|...++++.+. +. .....++..+...+...|+.++|...++++...
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 334555555555555555555555555433 11 112334444555555555555555555555422
Q ss_pred cCcchhhHHHHHHhhhccccchhhHHHHHHHHHc------CCCC-ChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc----
Q 047492 706 EQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ------CFPL-DTYTYNILLRRLSV-SEIDHACELFNRMRRK---- 773 (806)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~---- 773 (806)
.+....++..+...|...|++++|+..++++.+. +..| ...++..+...|.. |++++|...+++....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1333444555555566666666666666655543 0011 23345555555555 6666666655555532
Q ss_pred --------------------------------------------CCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 774 --------------------------------------------GYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 774 --------------------------------------------g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
.......++..+..++.+.|++++|.+++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11123346778999999999999999999864
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-07 Score=90.45 Aligned_cols=199 Identities=10% Similarity=-0.013 Sum_probs=90.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 309 RFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLC 388 (806)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 388 (806)
.+......+...|++++|+..|++..+....++...+..+..++...|++++|.+.|++..+.. +.+...|..+...|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 3334444444455555555555544443322344444444455555555555555555554432 122334455555555
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 047492 389 GDGSTHEAYEVLKNSIDHGLFPGK-------KTLSILADALCRDGKFEQMKDLVIFALERNIKL--RDVTYDKFISALCK 459 (806)
Q Consensus 389 ~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 459 (806)
..|++++|.+.+++..+.... +. ..|..+...+...|++++|.+.++++.+.. +. +...+..+..+|..
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHH
Confidence 555555555555555543211 22 234444455555566666666666555432 11 23344444444443
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 047492 460 ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALH 520 (806)
Q Consensus 460 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 520 (806)
.| ..+++.+...... +...|.... ....+.+++|+..+++..+ +.|+....
T Consensus 166 ~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~ 216 (228)
T 4i17_A 166 NG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEI 216 (228)
T ss_dssp HH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHH
Confidence 32 2223333333222 233332222 2233446667777766665 34544433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-06 Score=83.21 Aligned_cols=184 Identities=8% Similarity=-0.077 Sum_probs=123.3
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 326 VFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL-SPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 326 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
++..|++....+ .++..++..+..++...|++++|++++.+..+.|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 34555566777788888888888888888766542 1355677777888888888888888888887
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--hcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047492 405 DHGLFP-----GKKTLSILADALC--RDG--KFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 405 ~~~~~p-----~~~~~~~ll~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 475 (806)
+. .| +..+...+..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 34 2455556665532 223 788888888887654 34433344455578888888888888876654
Q ss_pred cCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047492 476 MNK---------VASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA 518 (806)
Q Consensus 476 ~~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 518 (806)
..+ ..|+.++..+|......|+ +|.+++.++++ ..|+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 310 1256666455555555666 77888888887 455543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.82 E-value=5.8e-07 Score=86.70 Aligned_cols=78 Identities=6% Similarity=0.078 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 185 VAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRE-CVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
|+..++++...+.++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444433333333334444444445555555555554443332 1233344444444555555555555555444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-08 Score=96.40 Aligned_cols=168 Identities=10% Similarity=-0.029 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCC--C----ccchHHHHHHhhcc-CCHHHHHHHHHHhHhCCCCC-----CH
Q 047492 168 AYHVLLNALVEQGCFDAVAVVSKQISMRGFE--N----DVTRTIMLKCLCKQ-KKIDEAVEYFQQLVSGRECV-----SG 235 (806)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-----~~ 235 (806)
+|+.+..+|...|++++|+..|++....... + ..++..+...|... |++++|...|++..+..... ..
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444444444444444444444444333210 0 12445555555554 66666666655554321100 02
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcch-----hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcc--
Q 047492 236 FMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLE-----KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVF-- 308 (806)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 308 (806)
.+++.+...+.+.|++++|+..|++......-.+.. ..|..+..++...|++++|+..|++..+...-.++..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 345566666666666666666666655431111111 1345555566666666666666666543111111111
Q ss_pred -cHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 047492 309 -RFNFLVSRLL--KENRLMEVFDLFMDMKE 335 (806)
Q Consensus 309 -~~~~li~~~~--~~~~~~~a~~~~~~m~~ 335 (806)
.+..++.++. ..+++++|+..|+.+..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 2333444443 34556666666665543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-07 Score=92.68 Aligned_cols=208 Identities=10% Similarity=-0.065 Sum_probs=128.6
Q ss_pred ChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC----CC--CccchHHHHHHhhccCCHHHH
Q 047492 146 KPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRG----FE--NDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 146 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~li~~~~~~g~~~~a 219 (806)
++++|...|++. ...|...|++++|...|++..... .+ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666665 224556677777777776665542 11 134677788888888888888
Q ss_pred HHHHHHhHhCCCC---C--CHHhHHHHHHHHHhc-CCHHHHHHHHHHhhhCC---CCCcc-hhhHHHHHHHHHHcCCHHH
Q 047492 220 VEYFQQLVSGREC---V--SGFMIGIVVDALCKN-SRFEQAGKLLEDFKDRD---DVVKL-EKAYDVWLRNLVRAGRLDL 289 (806)
Q Consensus 220 ~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~g~~~~ 289 (806)
...+++..+.... + -..+++.+...|... |++++|+..|++..... +..+. ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888776643211 1 134677778888885 88888888887765420 11111 3467777888888888888
Q ss_pred HHHHHHhhhhcCCCCCCcc-----cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHH--HcC
Q 047492 290 ALEFLKSKNSLEGYVPEVF-----RFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDG------VTMNTVLCFFC--KAG 356 (806)
Q Consensus 290 a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~--~~g 356 (806)
|+..|++......-.+... .|..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 8888888765322122211 4566667777888888888888877653 2321 12344455553 345
Q ss_pred ChHHHHHHHHHHHh
Q 047492 357 MVDVAIELYKSRSE 370 (806)
Q Consensus 357 ~~~~a~~~~~~~~~ 370 (806)
++++|...|+.+..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 57777777766543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-07 Score=91.12 Aligned_cols=185 Identities=9% Similarity=-0.023 Sum_probs=142.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CchhHHH
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV--TSFIGNT 681 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 681 (806)
.+..+...+.+.|++++|+..|+++.+. .|+ ...+..+..+|...|++++|...++...+..+.. ....+..
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 4667888899999999999999999984 332 5677888899999999999999999999875422 2345666
Q ss_pred HHHHhhc--------cccHHHHHHHHHhhhhccCcchhhH-----------------HHHHHhhhccccchhhHHHHHHH
Q 047492 682 LLLHALK--------TRDLYEAWIRLRGMLINEQSKISLL-----------------GQLIGVFSGCIKVSQDIEGLQKM 736 (806)
Q Consensus 682 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~ 736 (806)
+...+.. .|+..+|...++++....|.+.... ..+...|...|++++|+..|+++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777778 9999999999999998888777666 55688899999999999999999
Q ss_pred HHcCCCCC----hhhHHHHHHHHh----------h-hcHHHHHHHHHHHHHcCCCCCh----hhHHHHHhhhhccCCHHH
Q 047492 737 IEQCFPLD----TYTYNILLRRLS----------V-SEIDHACELFNRMRRKGYEPDQ----WTFDILKCGLYNCLRTDE 797 (806)
Q Consensus 737 ~~~~~~~~----~~~~~~li~~~~----------~-g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~e 797 (806)
.+.. |+ ...+..+..+|. . |++++|+..|+++.+.. |+. .....+...+.+.|+.++
T Consensus 175 l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 175 FDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHHHHhhh
Confidence 9863 33 345667777775 4 78899999999998763 443 233444444455555444
Q ss_pred H
Q 047492 798 A 798 (806)
Q Consensus 798 A 798 (806)
+
T Consensus 251 ~ 251 (261)
T 3qky_A 251 D 251 (261)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-07 Score=78.29 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=70.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047492 380 YNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK 459 (806)
Q Consensus 380 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 459 (806)
|..+...+...|++++|.++++++.+... .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 34444445555555555555555544322 134444555555555555555555555555443 3344455555666666
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 460 ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 460 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666554433 455566666666666666666666666654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-07 Score=86.14 Aligned_cols=179 Identities=6% Similarity=-0.024 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCc--hhHHHHH
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMY-P-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTS--FIGNTLL 683 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~ 683 (806)
.+..+...+.+.|++++|+..|+++.+.... | ....+..+..+|.+.|++++|+..++.+.+..+.... ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3666778899999999999999999984221 2 1356777888999999999999999999887654332 1333333
Q ss_pred HHhhc------------------cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCCh
Q 047492 684 LHALK------------------TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDT 745 (806)
Q Consensus 684 ~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 745 (806)
..+.. .|+.++|...++++....|.+...+.++..... +.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~~-------- 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRLA-------- 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHHH--------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHHH--------
Confidence 33332 456666666666666555555444332111000 000000
Q ss_pred hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC--hhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 746 YTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD--QWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 746 ~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
.....+...|.. |++++|+..|+++.+.-.... ...+..+..++.+.|++++|.+.++.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 001223444555 666666666666665421111 13455566666666666666666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-07 Score=79.51 Aligned_cols=129 Identities=19% Similarity=0.106 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhc
Q 047492 133 FNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCK 212 (806)
Q Consensus 133 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 212 (806)
.|..+...+...|++++|+.+|+++.+.+ ..+...+..+...+...|++++|...++++....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35556666777777777777777776542 22455666666666667777777777777666655555566666666666
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047492 213 QKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (806)
.|++++|.++++.+.+... .+..++..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6667777666666665432 2345555666666666666666666665543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-07 Score=104.17 Aligned_cols=183 Identities=13% Similarity=-0.043 Sum_probs=150.6
Q ss_pred HhcCChHHHHHHHHHHHh------CCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcc
Q 047492 617 CKAMKANLAWGFMREMRH------NGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKT 689 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~------~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 689 (806)
...|++++|+..+++..+ ....| +...+..+..++...|++++|.+.++++.+.+. .+...+..+...+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 789999999999999981 01334 566788888999999999999999999988753 3456778888889999
Q ss_pred ccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHH
Q 047492 690 RDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFN 768 (806)
Q Consensus 690 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~ 768 (806)
|++++|...|+++....|.+...+..+..+|...|++++ ++.|+++.+. .+.+...|..+..++.. |++++|+..|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST-NDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-CCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999997 35567889999999999 99999999999
Q ss_pred HHHHcCCCCC-hhhHHHHHhhhhccCC--------HHHHHHHHHh
Q 047492 769 RMRRKGYEPD-QWTFDILKCGLYNCLR--------TDEAERRLEE 804 (806)
Q Consensus 769 ~m~~~g~~p~-~~~~~~l~~~~~~~g~--------~~eA~~~l~~ 804 (806)
+..+. .|+ ...+..+..++...|+ +++|.+.+++
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA 601 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred hhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence 88754 454 4567778888877554 6677766654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-07 Score=83.55 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=60.1
Q ss_pred HHHHHhcCChhhHHHHHHHHhhcCCCCC-hhhHHH----------------HHHHHHhcCCcchHHHHHHHHHhcCCCCc
Q 047492 138 VMGYALAGKPDIALHLFGKMRFQGMDLD-DYAYHV----------------LLNALVEQGCFDAVAVVSKQISMRGFEND 200 (806)
Q Consensus 138 i~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 200 (806)
...+...|++++|+..|++..+. .|+ ...|.. +..++.+.|++++|+..|++..+..+.+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 34455666666666666666554 332 223333 55555566666666666666666555555
Q ss_pred cchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 047492 201 VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248 (806)
Q Consensus 201 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (806)
.++..+..++...|++++|...|++.++..+ .+..++..+...|...
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 5666666666666666666666666655443 2344555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-05 Score=84.02 Aligned_cols=182 Identities=11% Similarity=-0.049 Sum_probs=117.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC---------CC---C
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGR---------QV---T 675 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~---~ 675 (806)
.|...+.-+.+.|+.++|..++++.... |....+.. .|+.....++. ++.+.+.-. .+ .
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhccccc
Confidence 3767777788899999999999999986 54332211 22222222222 222222110 01 1
Q ss_pred chhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccc-cchhhHHHHHHHHHcCCCCChhhHHHHHHH
Q 047492 676 SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCI-KVSQDIEGLQKMIEQCFPLDTYTYNILLRR 754 (806)
Q Consensus 676 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 754 (806)
..+|...+....+.++.+.|..++..+ ...+....+|-..+..-..++ +.+.|..+|+...+. .+.+...|...++-
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 133444445555678899999999999 322233344443333333344 699999999999986 34445566777776
Q ss_pred Hhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 755 LSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 755 ~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
... |+.+.|..+|+++. .....|..++.--...|+.+.+.++++++
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667 99999999999872 25667777777667789999999888764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.65 E-value=8.2e-07 Score=83.91 Aligned_cols=146 Identities=10% Similarity=-0.005 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHHHHHhhccccHHHHHHHHHhhhhccCcchh---hHHH
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKIS---LLGQ 715 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 715 (806)
...+..+...+...|++++|...++.+.+...... ...+..+...+.+.|+.++|...++++....|.+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566778889999999999999887644322 235666777888888888888888888876666554 3444
Q ss_pred HHHhhhc------------------cccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC
Q 047492 716 LIGVFSG------------------CIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYE 776 (806)
Q Consensus 716 l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~ 776 (806)
+..+|.. .|+.++|+..|+++.+. .|.+...+......-.. +...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~P~~~~a~~a~~~l~~~~~~~~~-------------- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-YPNSQYTTDATKRLVFLKDRLAK-------------- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-CcCChhHHHHHHHHHHHHHHHHH--------------
Confidence 4444432 45666666666666654 22222222221111110 11100
Q ss_pred CChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 777 PDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 777 p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
....+...+.+.|++++|+..++++
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGM 173 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 1124567788999999999998875
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-05 Score=83.00 Aligned_cols=374 Identities=7% Similarity=-0.071 Sum_probs=196.2
Q ss_pred CcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCC-hhhHHHHHHHHhhc-CCCC-Chhh
Q 047492 92 FHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGK-PDIALHLFGKMRFQ-GMDL-DDYA 168 (806)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-~~~p-~~~~ 168 (806)
..+....|...+..+.. ++++.+..+++..... .|++..|...+....+.+. .+....+|+..... |..| +...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 55667777777777765 6677777777777663 3577777777776666553 34566677766543 4322 4455
Q ss_pred HHHHHHHHH----hcCCcchHHHHHHHHHhcCCCCcc-chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 047492 169 YHVLLNALV----EQGCFDAVAVVSKQISMRGFENDV-TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVD 243 (806)
Q Consensus 169 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 243 (806)
|...+..+. ..++.+.+..+|+........+.. .|..... +........+..+..+.
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~----------------- 149 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIVGDT----------------- 149 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHHHHH-----------------
Confidence 555555433 234566677777777653111111 1111111 01111111122221111
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC--C-----HHHHHHHHHhhhhcCCCCCCcccHHHHHHH
Q 047492 244 ALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG--R-----LDLALEFLKSKNSLEGYVPEVFRFNFLVSR 316 (806)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 316 (806)
.+.+..|..+++.+... -...+...|...+.--...+ - .+.+..+|+++... ++.+...|-..+..
T Consensus 150 ----~~~y~~ar~~y~~~~~~-~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 150 ----LPIFQSSFQRYQQIQPL-IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEY 222 (493)
T ss_dssp ----HHHHHHHHHHHHHHHHH-HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 11223333333333221 00012224444333322110 0 23456677766642 23335556666667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC---------CCCC---CHHHHHHHH
Q 047492 317 LLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF---------GLSP---NGIVYNYLI 384 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~---~~~~~~~li 384 (806)
+.+.|+.+.|..++++.... |+...+.. .|....+.++. ++.+.+. +..+ ....|...+
T Consensus 223 ~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 77788888888888887776 33322211 22222222221 2222211 0001 124566666
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 385 NSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCR-DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKV 463 (806)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 463 (806)
....+.+..+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.. +-+...+...++...+.|+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH
Confidence 6666677888888888888 321 2244444322222112 236888888888887753 33345556667777788888
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 464 EVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+.|..+|+.+.+ ....|...+..-...|+.+.+..+++++.+
T Consensus 371 ~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888887621 466777777777777888888888887764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.5e-06 Score=80.39 Aligned_cols=216 Identities=7% Similarity=0.071 Sum_probs=160.0
Q ss_pred CCChhhHHHHHHhhhcCC--ChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH----Hhc---
Q 047492 549 ETNFQIYNFFIDGAGHVK--RPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL----CKA--- 619 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 619 (806)
+.+..+|+.--..+...| +++++++.++.+... .|...+ +|+.-...+ ...
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~------------------aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQ------------------IWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCH------------------HHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHH------------------HHHHHHHHHHHHHHhcccc
Confidence 334555666666666777 999999999999854 566655 365555554 444
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh--HHHHHHHHHHhCCCCCCchhHHHHHHHhhcccc------
Q 047492 620 MKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYD--MVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRD------ 691 (806)
Q Consensus 620 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 691 (806)
+++++++.+++.+.+.. +-+..+|..-..++.+.|.++ ++++.++++.+.++. +-..++.-.......++
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78999999999999842 337778888888888899988 999999999987643 33344444444445555
Q ss_pred HHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhH-HHHHHHHHcC--CCCChhhHHHHHHHHhh-hcHHHHHHHH
Q 047492 692 LYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI-EGLQKMIEQC--FPLDTYTYNILLRRLSV-SEIDHACELF 767 (806)
Q Consensus 692 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~--~~~~~~~~~~li~~~~~-g~~~~A~~~~ 767 (806)
+++++..+.++....|.+...|+.+...+.+.|+...++ +..+++.+.+ .+.++..+..+..+|.. |+.++|++++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 899999999999999999999999999998888865544 4666655532 24567889999999999 9999999999
Q ss_pred HHHHHcCCCC-ChhhHHHHHh
Q 047492 768 NRMRRKGYEP-DQWTFDILKC 787 (806)
Q Consensus 768 ~~m~~~g~~p-~~~~~~~l~~ 787 (806)
+.+.+. +.| ....|...+.
T Consensus 282 ~~l~~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHT-TCGGGHHHHHHHHH
T ss_pred HHHHhc-cChHHHHHHHHHHh
Confidence 999864 333 3344544433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-06 Score=81.70 Aligned_cols=131 Identities=11% Similarity=-0.072 Sum_probs=90.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047492 383 LINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK 462 (806)
Q Consensus 383 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 462 (806)
+..+|.+.|++++|+..|++..+.... +...+..+...+...|++++|...|+++++.. +.+...+..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 777788888888888888888876433 67778888888888888888888888888875 4566777777777765543
Q ss_pred h--hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 047492 463 V--EVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRAL 519 (806)
Q Consensus 463 ~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 519 (806)
. +.+...++... .+.|....+.....++...|++++|+..|++.++ +.|+...
T Consensus 138 ~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 192 (208)
T 3urz_A 138 QEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHH
T ss_pred HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHH
Confidence 3 33444444442 1222223344455666778889999999998887 5676543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-06 Score=83.38 Aligned_cols=186 Identities=10% Similarity=-0.093 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcc---hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCC-CC-ChhhH
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQ---VRFNDTLVMGYALAGKPDIALHLFGKMRFQGM-DL-DDYAY 169 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~ 169 (806)
+...+......+.+.|+++.|...++.+.... +.+ ...+..+..+|.+.|++++|+..|++..+... .| ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555556666667777777777777766642 222 55666666677777777777777777765411 11 12345
Q ss_pred HHHHHHHHh--------cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHH
Q 047492 170 HVLLNALVE--------QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIV 241 (806)
Q Consensus 170 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (806)
..+..++.. .|++++|...|+++.+..+.+......+.......+ .. ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~----------~~--------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA----------KL--------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH----------HH--------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH----------HH--------HHHHHHH
Confidence 555555656 667777777777776665544443322110000000 00 0012334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCc-chhhHHHHHHHHHHc----------CCHHHHHHHHHhhhh
Q 047492 242 VDALCKNSRFEQAGKLLEDFKDRDDVVK-LEKAYDVWLRNLVRA----------GRLDLALEFLKSKNS 299 (806)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~ 299 (806)
...|.+.|++++|+..|+.+.......+ ....+..+..+|... |++++|+..|+++..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 5555556666666666665554311111 223445555555543 555666666665554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-07 Score=83.72 Aligned_cols=159 Identities=9% Similarity=0.014 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHA 686 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 686 (806)
.+..+...+.+.|++++|...|++..+. .| +...+..+..++...|++++|...++....... ++..........
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 3667777788888888888888877662 33 456677777888888888888888877765443 222221111000
Q ss_pred hccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHH
Q 047492 687 LKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACE 765 (806)
Q Consensus 687 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~ 765 (806)
+...++..+|+..++++.+. .|.+...+..+...+.. |++++|..
T Consensus 84 ---------------------------------~~~~~~~~~a~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 84 ---------------------------------LHQQAAESPELKRLEQELAA-NPDNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp ---------------------------------HHHHHTSCHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------------------HHhhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 01112223355666666654 23345566666666666 66666666
Q ss_pred HHHHHHHcCCCC-ChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 766 LFNRMRRKGYEP-DQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 766 ~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
.|+++.+....+ +...+..+..++...|+.++|...+++
T Consensus 130 ~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 130 LLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 666666543322 234555566666666666666666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8.5e-07 Score=87.29 Aligned_cols=164 Identities=16% Similarity=0.024 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHH
Q 047492 639 PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIG 718 (806)
Q Consensus 639 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 718 (806)
.+...+..+...+...|++++|...+++..+.... +...+..+...+...|+.++|...++++....|...........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 34455666777778888888888888888776533 34566667778888888888888888887766644444444444
Q ss_pred hhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCC-ChhhHHHHHhhhhccCCHH
Q 047492 719 VFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEP-DQWTFDILKCGLYNCLRTD 796 (806)
Q Consensus 719 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~ 796 (806)
.+...++.++|+..++++.+. .|.+...+..+...+.. |++++|+..|.++.+..... +...+..++.+|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 567778888899999998887 35667888888888888 99999999999988764332 3567888889999999999
Q ss_pred HHHHHHHh
Q 047492 797 EAERRLEE 804 (806)
Q Consensus 797 eA~~~l~~ 804 (806)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 98887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.2e-07 Score=88.28 Aligned_cols=166 Identities=8% Similarity=-0.052 Sum_probs=112.7
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHH-hHHHHHH
Q 047492 165 DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGF-MIGIVVD 243 (806)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~ 243 (806)
+...+..+...+...|++++|...|++..+..+.+...+..+...+...|++++|...++......+ +.. .......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHHH
Confidence 3445666666677777888888888877777777777777777777888888888888777765543 322 2222233
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCH
Q 047492 244 ALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRL 323 (806)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 323 (806)
.+...++.++|...|++.... .+.+...+..+...+...|++++|++.|.++.....-..+...+..+...+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 355667777777777776653 234556777777777888888888888887776432223356677777888888887
Q ss_pred HHHHHHHHHHH
Q 047492 324 MEVFDLFMDMK 334 (806)
Q Consensus 324 ~~a~~~~~~m~ 334 (806)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-07 Score=81.30 Aligned_cols=161 Identities=9% Similarity=-0.027 Sum_probs=105.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHH-HH
Q 047492 99 FHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA-LV 177 (806)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 177 (806)
+......+.+.|+++.|...++..... .|.+...+..+...|...|++++|+..|++.... .|++..+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 444556667778888888877776553 2446677777778888888888888888877655 3333322222111 12
Q ss_pred hcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHH
Q 047492 178 EQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV-SGFMIGIVVDALCKNSRFEQAGK 256 (806)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 256 (806)
..+....|...++...+..+.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22333456777777777766667777777777777777777777777777765533 34566777777777777777777
Q ss_pred HHHHhh
Q 047492 257 LLEDFK 262 (806)
Q Consensus 257 ~~~~~~ 262 (806)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.7e-06 Score=79.26 Aligned_cols=160 Identities=11% Similarity=0.005 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----ChhHHHHHHHHHHhCCCCCCchhHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTK----NYDMVVGVMNHLEGHGRQVTSFIGNTLLL 684 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 684 (806)
+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|.+.+++..+.+ ++..+..+..
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 7788888999999999999999999865 56677777777777 6 8999999999998775 4556677777
Q ss_pred Hhhc----cccHHHHHHHHHhhhhccCc--chhhHHHHHHhhhc----cccchhhHHHHHHHHHcCCCCChhhHHHHHHH
Q 047492 685 HALK----TRDLYEAWIRLRGMLINEQS--KISLLGQLIGVFSG----CIKVSQDIEGLQKMIEQCFPLDTYTYNILLRR 754 (806)
Q Consensus 685 ~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 754 (806)
.+.. .++..+|...++++....+. ....+..|...|.. .++.++|+..|++..+. +.+...+..|...
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMM 171 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 7776 78999999999999876653 36778888888887 78999999999999986 3466678888888
Q ss_pred Hhh--h-----cHHHHHHHHHHHHHcCCCC
Q 047492 755 LSV--S-----EIDHACELFNRMRRKGYEP 777 (806)
Q Consensus 755 ~~~--g-----~~~~A~~~~~~m~~~g~~p 777 (806)
|.. | ++++|+..|++..+.|...
T Consensus 172 y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 172 FQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 876 4 8999999999998887543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=80.01 Aligned_cols=138 Identities=12% Similarity=-0.007 Sum_probs=73.8
Q ss_pred HcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047492 354 KAGMVDVAIELYKSRSEFGLSPN-GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMK 432 (806)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (806)
..|++++|+..++..... .|+ ...+-.+...|.+.|++++|++.|++..+.... +..+|..+..++...|++++|.
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHH
Confidence 345555555555554432 121 223344555566666666666666665554322 4555556666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 433 DLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLI-HSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
..|+...+.. +-+...+..+...|.+.|+.++|.+. ++...+..+. ++..|......+...|
T Consensus 86 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666665554 33455566666666666666554433 3555554443 5555555555554444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.3e-07 Score=98.64 Aligned_cols=174 Identities=9% Similarity=-0.099 Sum_probs=133.4
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 047492 318 LKENRLMEVFDLFMDMK--------EGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG 389 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 389 (806)
...|++++|++.+++.. +. .+.+...+..+..+|.+.|++++|.+.|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67888999999998887 32 12356677778888888999999999998887643 3466788888888888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047492 390 DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLI 469 (806)
Q Consensus 390 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 469 (806)
.|++++|.+.|++..+.... +...+..+..++.+.|++++ .+.|+++.+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988876433 56778888888888899988 88888888876 55667888888889999999999998
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 047492 470 HSELSRMNKVASENTYIQLIHGFNKSNR 497 (806)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~li~~~~~~~~ 497 (806)
|++..+.++. +...|..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 8888766544 45667777777665554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.1e-05 Score=74.71 Aligned_cols=152 Identities=7% Similarity=-0.027 Sum_probs=75.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC------
Q 047492 426 GKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVE--VGYLIHSELSRMNKVASENTYIQLIHGFNKSNR------ 497 (806)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------ 497 (806)
++++++.++++.+.+.. +-+..+|+.-...+.+.|.++ ++.+.++.+.+.++. |...|+.-...+...++
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 34444444444444433 333344444333344444444 444444444444443 44444444444444333
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhC---CCCChhhHHHHHHhhhcCCChHHHHHH
Q 047492 498 ADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSH---QETNFQIYNFFIDGAGHVKRPDLARAV 574 (806)
Q Consensus 498 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 574 (806)
++++++.+++++.. -.-|...++..-..+...+.....+..+....... ...++..+..+.+.|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~-~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVK-CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44555555554442 11122233333333333333333333333222211 245667788899999999999999999
Q ss_pred HHHHHH
Q 047492 575 YELMQR 580 (806)
Q Consensus 575 ~~~m~~ 580 (806)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.9e-07 Score=88.64 Aligned_cols=187 Identities=11% Similarity=-0.043 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-----Cchh
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHN----GMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV-----TSFI 678 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~ 678 (806)
|......|...|++++|...|.+..+. |-.+ -..+|..+..+|...|++++|...+++..+..... ...+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666677788899999999999987762 2111 14478888889999999999999998876542211 1345
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhhhccCc------chhhHHHHHHhhhccccchhhHHHHHHHHHcCCC-CC----hhh
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGMLINEQS------KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFP-LD----TYT 747 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 747 (806)
++.+...+.. |++++|...++++....+. ...+++.+...|...|++++|+..++++.+.... ++ ...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 6677777878 9999999999998743332 2467888999999999999999999999874211 11 225
Q ss_pred HHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCCh------hhHHHHHhhhhccCCHHHHHH
Q 047492 748 YNILLRRLSV-SEIDHACELFNRMRRKGYEPDQ------WTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 748 ~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~eA~~ 800 (806)
+..+..++.. |++++|...|++.. . .|+. .....++.++ ..|+.+++.+
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 6666777777 99999999999988 3 3322 1344455555 6788777766
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-07 Score=80.67 Aligned_cols=121 Identities=8% Similarity=-0.101 Sum_probs=60.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHH
Q 047492 615 GLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLY 693 (806)
Q Consensus 615 ~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 693 (806)
.+...|++++|+..++.... ..| +...+..+...|...|++++|++.+++..+... .+...+..+...+...|+.+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence 34445566666666665543 222 223344455566666666666666666655432 23334444444445555555
Q ss_pred HHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHH-HHHHHH
Q 047492 694 EAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEG-LQKMIE 738 (806)
Q Consensus 694 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 738 (806)
+|...++++....|.+..++..+...|.+.|+.++|.+. ++++.+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555555444444444555555555555554444333 244444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-05 Score=74.49 Aligned_cols=176 Identities=12% Similarity=-0.002 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----ChhHHHHHH
Q 047492 325 EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG----STHEAYEVL 400 (806)
Q Consensus 325 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~ 400 (806)
+|++.|++..+.| +...+..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45556666666666667777777776666643 44555555555555 4 667777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 047492 401 KNSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIK-LRDVTYDKFISALCK----ANKVEVGYLIHS 471 (806)
Q Consensus 401 ~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 471 (806)
++..+.| +...+..+...|.. .+++++|.++|++..+.+.. .....+..|...|.. .++.++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7666553 44555555555555 56677777777766655411 014556666666666 666777777777
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 047492 472 ELSRMNKVASENTYIQLIHGFNKS-N-----RADIAARLLVEMEENG 512 (806)
Q Consensus 472 ~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~~ 512 (806)
...+.+ .+...+..|...|... | ++++|...|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 766551 1344555566666543 2 6777777777777655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.8e-06 Score=92.07 Aligned_cols=164 Identities=10% Similarity=-0.107 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 047492 320 ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEV 399 (806)
Q Consensus 320 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 399 (806)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887753 2357788888899999999999999999988754 34577888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhhc
Q 047492 400 LKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA---NKVEVGYLIHSELSRM 476 (806)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 476 (806)
+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998876433 67788889999999999999999999988875 45677888899999999 9999999999998887
Q ss_pred CCCCCHHHHHHH
Q 047492 477 NKVASENTYIQL 488 (806)
Q Consensus 477 ~~~~~~~~~~~l 488 (806)
++. +...|..+
T Consensus 158 ~p~-~~~~~~~l 168 (568)
T 2vsy_A 158 GVG-AVEPFAFL 168 (568)
T ss_dssp TCC-CSCHHHHT
T ss_pred CCc-ccChHHHh
Confidence 765 33344433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=87.19 Aligned_cols=186 Identities=10% Similarity=-0.033 Sum_probs=134.4
Q ss_pred cCChHHHHHHHHHHHhC------CCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-----CchhHHHHH
Q 047492 619 AMKANLAWGFMREMRHN------GMYPSM----ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV-----TSFIGNTLL 683 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~~------g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~ 683 (806)
.|++++|.+++++..+. ++.++. ..|......|...|++++|.+.+.+..+..... -...++.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777665541 112332 256666777889999999999998876543211 134677777
Q ss_pred HHhhccccHHHHHHHHHhhhhcc-----C-cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-----hhhHHHHH
Q 047492 684 LHALKTRDLYEAWIRLRGMLINE-----Q-SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-----TYTYNILL 752 (806)
Q Consensus 684 ~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li 752 (806)
..+...|++.+|...++++.... + ....+++.+...|.. |++++|+..++++.+.....+ ..+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 88888999999999999887321 1 224577888999988 999999999999987521111 45788888
Q ss_pred HHHhh-hcHHHHHHHHHHHHHc----CCCCCh-hhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 753 RRLSV-SEIDHACELFNRMRRK----GYEPDQ-WTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 753 ~~~~~-g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
..|.. |++++|+..|++.... +..+.. .++..++.++...|++++|.+.+++-
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999 9999999999998864 222222 25666777788889999999999864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=9.6e-06 Score=80.16 Aligned_cols=175 Identities=7% Similarity=-0.082 Sum_probs=112.5
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047492 556 NFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN 635 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 635 (806)
...+..+...|++++|..++++..+.. +........+. .+..+...+...|++++|+..|++..+.
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~Ai~~~~~al~~ 144 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQ------------WQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHH------------HHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHH------------HHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 334677888999999999999988632 22211110000 1445777777888999999999999874
Q ss_pred CCC-CC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcch
Q 047492 636 GMY-PS----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKI 710 (806)
Q Consensus 636 g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 710 (806)
... ++ ..+++.+..+|...|++++|...++++.+.-.. .....+...
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~~ 196 (293)
T 3u3w_A 145 QLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA----------------------------LHDNEEFDV 196 (293)
T ss_dssp CCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------SSCCHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----------------------------cccchhHHH
Confidence 222 22 236888888999999999999999888642100 000011122
Q ss_pred hhHHHHHHhhhccccchhhHHHHHHHHHcC----CCCC-hhhHHHHHHHHhh-h-cHHHHHHHHHHHHH
Q 047492 711 SLLGQLIGVFSGCIKVSQDIEGLQKMIEQC----FPLD-TYTYNILLRRLSV-S-EIDHACELFNRMRR 772 (806)
Q Consensus 711 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~li~~~~~-g-~~~~A~~~~~~m~~ 772 (806)
.++..+...|.+.|++++|+..++++.+.. ..+. ..+|..+..+|.. | .+++|.+.|++...
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 355666777777777777777777666531 1111 4567777777777 7 45777777776653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-05 Score=79.68 Aligned_cols=164 Identities=9% Similarity=0.034 Sum_probs=107.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHh
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNG-MYPSM----ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHA 686 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 686 (806)
.+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...+++..+.........
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-------- 152 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-------- 152 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--------
Confidence 3556667777777777777776531 11221 1222344455556677777777777665332211110
Q ss_pred hccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc-----CCCCC-hhhHHHHHHHHhh-hc
Q 047492 687 LKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ-----CFPLD-TYTYNILLRRLSV-SE 759 (806)
Q Consensus 687 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~-g~ 759 (806)
....+++.+...|...|++++|+..++++.+. +..+. ..+|..+...|.. |+
T Consensus 153 ---------------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 153 ---------------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 01235677778888888888888888888741 11122 3478888999999 99
Q ss_pred HHHHHHHHHHHHHc----CCCCC-hhhHHHHHhhhhccCC-HHHHHHHHHh
Q 047492 760 IDHACELFNRMRRK----GYEPD-QWTFDILKCGLYNCLR-TDEAERRLEE 804 (806)
Q Consensus 760 ~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~-~~eA~~~l~~ 804 (806)
+++|+..+++..+. +..+. ..++..+..++.+.|+ +++|.+.+++
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 99999999987753 22222 5678889999999995 6999998875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=5.8e-06 Score=90.60 Aligned_cols=154 Identities=10% Similarity=-0.093 Sum_probs=117.1
Q ss_pred cCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHH
Q 047492 284 AGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIE 363 (806)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 363 (806)
.|++++|++.|++..+. .+.+...+..+...+...|++++|.+.+++..+... .+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 57899999999988652 123467788888999999999999999999988642 367788899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHH
Q 047492 364 LYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD---GKFEQMKDLVIFALE 440 (806)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 440 (806)
.|++..+.. +.+...+..+...|.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988754 346788999999999999999999999999876433 677888899999999 999999999999988
Q ss_pred CC
Q 047492 441 RN 442 (806)
Q Consensus 441 ~~ 442 (806)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 76
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.6e-06 Score=76.87 Aligned_cols=127 Identities=10% Similarity=-0.080 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|.+.+++..+... .+...+..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 4556677788888899988888776 356778888888888888888888888888877642 34456666677777
Q ss_pred ccccHHHHHHHHHhhhhccCcch----------------hhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKI----------------SLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
..|+.++|...++++....+.+. .++..+..+|...|++++|+..++++.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777777776555444 56666777777777777777777777764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-06 Score=79.99 Aligned_cols=120 Identities=8% Similarity=-0.113 Sum_probs=61.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-----CCchhHHHHHHHhhcccc
Q 047492 617 CKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQ-----VTSFIGNTLLLHALKTRD 691 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 691 (806)
...|++++|.++++.+.. .......++..+...+...|++++|...+++....... .....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888888885555543 12234566777777788888888888888777652111 112333444444555555
Q ss_pred HHHHHHHHHhhhhc---cC----cchhhHHHHHHhhhccccchhhHHHHHHHH
Q 047492 692 LYEAWIRLRGMLIN---EQ----SKISLLGQLIGVFSGCIKVSQDIEGLQKMI 737 (806)
Q Consensus 692 ~~~a~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 737 (806)
.++|...++++... .+ ....++..+...|...|++++|+..+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555554421 11 112233444444444455555555544444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=9.8e-07 Score=76.50 Aligned_cols=101 Identities=11% Similarity=-0.092 Sum_probs=82.1
Q ss_pred hhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 047492 677 FIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLS 756 (806)
Q Consensus 677 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 756 (806)
..+..+...+.+.|++++|...++.+....|.+...|..+..+|...|++++|+..|+++.+. .|.+...|..+..+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHH
Confidence 345666677888889999999999888888888888888888888889999999999988886 3556778888888888
Q ss_pred h-hcHHHHHHHHHHHHHcCCCCChh
Q 047492 757 V-SEIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 757 ~-g~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
. |++++|+..|++..... ||..
T Consensus 116 ~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCHH
Confidence 8 99999998888888753 4443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=5.5e-06 Score=71.74 Aligned_cols=96 Identities=5% Similarity=-0.226 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhc
Q 047492 643 CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSG 722 (806)
Q Consensus 643 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (806)
.+..+...+.+.|++++|...|+.+....+ .+...+..+...+...|++++|...++++....|.+...+..+..+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 444555555666666666666666655532 2344455555566666666666666666666666666666666666666
Q ss_pred cccchhhHHHHHHHHHc
Q 047492 723 CIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 723 ~g~~~~A~~~~~~~~~~ 739 (806)
.|++++|+..|+++.+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.5e-05 Score=71.85 Aligned_cols=122 Identities=9% Similarity=-0.036 Sum_probs=63.1
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 384 INSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKV 463 (806)
Q Consensus 384 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 463 (806)
...+...|++++|.+.|++.. .|+...+..+...+...|++++|...++...+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 334444455555555554432 2344445555555555555555555555544443 33444455555555555555
Q ss_pred hHHHHHHHHHhhcCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 464 EVGYLIHSELSRMNKVA---------------SENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
++|...++...+..+.. ....+..+...|...|++++|...|++..+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555554432220 124556666666666666666666666665
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-05 Score=78.81 Aligned_cols=166 Identities=8% Similarity=0.044 Sum_probs=93.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHH
Q 047492 610 NTLIVGLCKAMKANLAWGFMREMRHNGMYPSM-----ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL 684 (806)
Q Consensus 610 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 684 (806)
...+..+...|++++|...+.+..+....... ..+..+...+...|++++|...+++..+.......
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------- 150 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID-------- 150 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC--------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc--------
Confidence 34455566666666666666665553211110 11222334445555666666666655543221110
Q ss_pred HhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcC-CCCC-----hhhHHHHHHHHhh-
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQC-FPLD-----TYTYNILLRRLSV- 757 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~- 757 (806)
......+++.+...|...|++++|+..++++.+.. ..|+ ..+|+.+...|..
T Consensus 151 ---------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 2qfc_A 151 ---------------------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH
Confidence 00012356667777777777777777777776320 1122 1467777777777
Q ss_pred hcHHHHHHHHHHHHHcC----CCC-ChhhHHHHHhhhhccCCHHHH-HHHHHh
Q 047492 758 SEIDHACELFNRMRRKG----YEP-DQWTFDILKCGLYNCLRTDEA-ERRLEE 804 (806)
Q Consensus 758 g~~~~A~~~~~~m~~~g----~~p-~~~~~~~l~~~~~~~g~~~eA-~~~l~~ 804 (806)
|++++|+..+++..... ... -..++..+..++.+.|+.++| ...+++
T Consensus 210 ~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 88888888887766431 111 145667777788888888888 665543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9e-06 Score=72.23 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhh
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLC 211 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 211 (806)
..+..+...+...|++++|+..|++..+.. ..+..++..+..++...|++++|...++......+.+..++..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 334444444455555555555555544331 1133344444444444444444444444444444333334444444444
Q ss_pred ccCCHHHHHHHHHHhHh
Q 047492 212 KQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 212 ~~g~~~~a~~~~~~~~~ 228 (806)
..|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-06 Score=74.88 Aligned_cols=109 Identities=8% Similarity=-0.102 Sum_probs=88.3
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCC
Q 047492 663 VMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFP 742 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 742 (806)
.++.+.... +.+...+..+...+...|++.+|...++.+....|.+...|..+..+|...|++++|+..|+++.+. .+
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-DI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC
Confidence 444544332 1233455667778889999999999999999888999999999999999999999999999999987 35
Q ss_pred CChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 743 LDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 743 ~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.+...|..+..+|.. |++++|...|++....
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788888888888 9999999999998865
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-05 Score=68.79 Aligned_cols=129 Identities=9% Similarity=-0.053 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4455556666667777777777666654322 45666666667777777777777777766654 445666777777777
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYIQ--LIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
..|++++|...+++..+..+. +...+.. ....+...|++++|+..+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 778888888777777766544 4444433 33336667788888887776543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.5e-06 Score=81.16 Aligned_cols=184 Identities=8% Similarity=-0.077 Sum_probs=134.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH-------HHHHHcCCChhHHHHHHHHHHhCCCCCCc----------
Q 047492 615 GLCKAMKANLAWGFMREMRHNGMYPS-MECYEEL-------IKLLCSTKNYDMVVGVMNHLEGHGRQVTS---------- 676 (806)
Q Consensus 615 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------- 676 (806)
++ ..++..+|.+.|.+..+ ..|+ ...|..+ ...+.+.++..+++..+..-.+. .|+.
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGL 90 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTT
T ss_pred cc-cCCCHHHHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCc
Confidence 44 68999999999999998 4553 4566666 45566666666666665554441 1110
Q ss_pred ------------hhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC
Q 047492 677 ------------FIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD 744 (806)
Q Consensus 677 ------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 744 (806)
...-.+...+...|++++|.+.+.......|.+. ....+...+.+.+++++|+..|+...+.. .|.
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 1122344567789999999999999987777666 77888889999999999999998665431 111
Q ss_pred --hhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC--hhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 745 --TYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD--QWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 745 --~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
...+..+..++.. |++++|+..|++.......|. .........++.+.|+.++|.++|+++
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2367777888888 999999999999885433254 335667888999999999999999876
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-05 Score=75.04 Aligned_cols=219 Identities=14% Similarity=0.041 Sum_probs=110.1
Q ss_pred cCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHH
Q 047492 564 HVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM-KANLAWGFMREMRHNGMYPSME 642 (806)
Q Consensus 564 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~ 642 (806)
+.+..++|+++++++.. +.|+..| +|+.--..+...| .+++++.+++.+.... +-+..
T Consensus 66 ~~e~se~AL~lt~~~L~--~nP~~yt------------------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~ 124 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR--MNPAHYT------------------VWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQ 124 (349)
T ss_dssp TTCCSHHHHHHHHHHHH--HCTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHH
T ss_pred hCCCCHHHHHHHHHHHH--hCchhHH------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHH
Confidence 33444566666666663 3455544 3555444555555 3666666666666532 12344
Q ss_pred HHHHHHHHHHcC-C-ChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHH--------HHHHHHHhhhhccCcchhh
Q 047492 643 CYEELIKLLCST-K-NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLY--------EAWIRLRGMLINEQSKISL 712 (806)
Q Consensus 643 ~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~ 712 (806)
.|+.-..++.+. + ++++++++++.+.+.... +...++--.+...+.|... +++..+.++....+.+...
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA 203 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence 455544444444 4 566666666666554322 2223333233333333333 5666666666666666666
Q ss_pred HHHHHHhhhcccc-------chhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcH--------------------HHHH
Q 047492 713 LGQLIGVFSGCIK-------VSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEI--------------------DHAC 764 (806)
Q Consensus 713 ~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~--------------------~~A~ 764 (806)
|+.....+.+.++ ++++++.++++... .+-|...|+-+-..+.+ |+. .+..
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVE 282 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----------
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHH
Confidence 6666666555554 45666666666654 34455556555555544 332 2222
Q ss_pred HHHHHHHHcC-----CCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 765 ELFNRMRRKG-----YEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 765 ~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
+...++...+ -.++...+..++..|...|+.++|.++++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222222211 0244555566666666666666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.8e-06 Score=82.25 Aligned_cols=193 Identities=13% Similarity=-0.017 Sum_probs=128.7
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
+...+..+...+...|++++|...|++..+. .|+... .|..+..+|.+.|++++|+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~------------------~~~~la~~~~~~~~~~~A~~~~~ 62 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAV------------------YYTNRALCYLKMQQPEQALADCR 62 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHH------------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHH------------------HHHHHHHHHHHhcCHHHHHHHHH
Confidence 4556777888899999999999999998864 454433 48889999999999999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcc
Q 047492 631 EMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 631 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
+..+. .| +...+..+..+|...|++++|...++...+.+.... ..+...++...+..+... .........+.+
T Consensus 63 ~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 136 (281)
T 2c2l_A 63 RALEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR-LNFGDDIPSALRIAKKKR---WNSIEERRIHQE 136 (281)
T ss_dssp HHTTS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCCSHHHHHHHHHHHHH---HHHHHHTCCCCC
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-hhHHHHHHHHHHHHHHHH---HHHHHHHHHhhh
Confidence 99874 44 567788889999999999999999998876543211 111112222222111111 111111234445
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-hhhHHHHHHHHhh--hcHHHHHHHHHHHHHc
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNILLRRLSV--SEIDHACELFNRMRRK 773 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~--g~~~~A~~~~~~m~~~ 773 (806)
..+...+...+ .|+.++|++.++++.+. .|+ ......+...+.. +.+++|..+|.+....
T Consensus 137 ~~i~~~l~~l~--~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 137 SELHSYLTRLI--AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CHHHHHHHHHH--HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55554444332 68888999888888775 344 3334444444444 6788899999887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-05 Score=64.89 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 047492 415 LSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK 494 (806)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 494 (806)
+......+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|...++...+.++. +...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 3344445555555555555555555543 344555555666666666666666666665555444 55556666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 047492 495 SNRADIAARLLVEMEE 510 (806)
Q Consensus 495 ~~~~~~a~~~~~~m~~ 510 (806)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666655
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.6e-05 Score=77.00 Aligned_cols=101 Identities=5% Similarity=-0.107 Sum_probs=72.6
Q ss_pred hHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047492 554 IYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMR 633 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 633 (806)
.+...+..+...|++++|.+.+.+..+... ........+. .+..+...+...|++++|+..+++..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~--~~~~~~~~~~------------~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQ------------WQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--CCHHHHHHHH------------HHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccc--CChhHHHHHH------------HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 455567788899999999999998876432 2111101111 14456677788999999999999988
Q ss_pred hCCC---CCC--HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 634 HNGM---YPS--MECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 634 ~~g~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
+... .+. ..+|..+...|...|++++|...+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6321 222 4478888999999999999999999886
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00045 Score=68.12 Aligned_cols=241 Identities=9% Similarity=-0.056 Sum_probs=135.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-C-Chh
Q 047492 318 LKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAG-MVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGD-G-STH 394 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~ 394 (806)
.+.+..++|+++++++...+. -+...|+.--..+...| .+++++++++.+.... +-+..+|+.--..+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 344455678888888777432 14445566555666666 4788888888777654 34556666665555554 5 677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----
Q 047492 395 EAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFE--------QMKDLVIFALERNIKLRDVTYDKFISALCKANK---- 462 (806)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---- 462 (806)
+++++++++.+...+ |...|+--.-.+.+.|.++ ++.+.++++.+.. +-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 777777777766544 6666665554444444444 6666666666655 4455666666555555554
Q ss_pred ---hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHHhHHHHHHHHHccCCcHHHHH
Q 047492 463 ---VEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEM-EENGHKPTRALHRAVIRCLCNMETPAKQFL 538 (806)
Q Consensus 463 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 538 (806)
++++.+.+++....++. |...|+-+-..+.+.|+...- ++... ...|...+. . ...+.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~--~~~~~~~~~~~~~~~-~--------------~~~~~ 282 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVP--ILPAILPYTASKLNP-D--------------IETVE 282 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGG--GHHHHGGGTC--------------------------
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccc--ccccccccccccccc-c--------------chhHH
Confidence 45666666666655554 666666555554444432000 00000 000000000 0 01111
Q ss_pred HHHHhHhh------CCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHH
Q 047492 539 QLLNMQLS------HQETNFQIYNFFIDGAGHVKRPDLARAVYELMQR 580 (806)
Q Consensus 539 ~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 580 (806)
.+...... ...+.+..+..+++.|...|+.++|.++++.+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11111111 1235667788999999999999999999999864
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-05 Score=72.37 Aligned_cols=119 Identities=8% Similarity=0.055 Sum_probs=72.6
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--hH
Q 047492 389 GDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISA-LCKANKV--EV 465 (806)
Q Consensus 389 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~~ 465 (806)
..|++++|...+++..+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34556666666666554432 245566666666666666666666666666554 3345555566666 5566776 77
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 466 GYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 466 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
|...++...+.++. +...+..+...|...|++++|...|++..+
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777776665544 566666777777777777777777777766
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.23 E-value=4.5e-05 Score=63.54 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
.+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|..+++.+.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 333344444444444444444444433221 123334444444444444444444444444332 223334444444444
Q ss_pred hcCChhHHHHHHHHHhhc
Q 047492 459 KANKVEVGYLIHSELSRM 476 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~ 476 (806)
..|++++|...++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 444444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.5e-05 Score=64.50 Aligned_cols=105 Identities=10% Similarity=-0.031 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
.+......|.+.|++++|++.|++..+.... +...|..+..++.+.|++++|...+++.++.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3444455555566666666666655544322 45555555556666666666666666655544 344555666666666
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYI 486 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 486 (806)
..|++++|.+.|+...+.++. +...+.
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~-~~~a~~ 119 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPS-NEEARE 119 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 666666666666666555443 443333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-05 Score=65.80 Aligned_cols=99 Identities=22% Similarity=0.145 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...+...|++++|+..|+++.... ..+..++..+...+...|++++|...++.+....+.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4455566666666677777777776665542 224455666666666666666666666666665555555566666666
Q ss_pred hccCCHHHHHHHHHHhHhCC
Q 047492 211 CKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~ 230 (806)
...|++++|...++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 66666666666666655543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=9.1e-06 Score=79.53 Aligned_cols=189 Identities=11% Similarity=-0.024 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH 685 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 685 (806)
..+..+...+...|++++|+..|++..+. .| +...|..+..+|.+.|++++|...+++..+... .+...+..+...
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 35778889999999999999999999884 44 677888899999999999999999999987753 345677788889
Q ss_pred hhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhhhcHHHHHH
Q 047492 686 ALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACE 765 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~g~~~~A~~ 765 (806)
+...|+.++|...++++....|.+...+...+....+.. ++ ..+........+.+......+ ..+..|++++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~i~~~l-~~l~~~~~~~A~~ 156 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KK-KRWNSIEERRIHQESELHSYL-TRLIAAERERELE 156 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HH-HHHHHHHHTCCCCCCHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HH-HHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999999998665544333333333222111 11 222333333345555544444 3333499999999
Q ss_pred HHHHHHHcCCCCChhhH-HHHHhhhhcc-CCHHHHHHHHHhh
Q 047492 766 LFNRMRRKGYEPDQWTF-DILKCGLYNC-LRTDEAERRLEEM 805 (806)
Q Consensus 766 ~~~~m~~~g~~p~~~~~-~~l~~~~~~~-g~~~eA~~~l~~m 805 (806)
.+++..+. .|+.... ..+...+.+. +.+++|.++|++.
T Consensus 157 ~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 157 ECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp TTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98877643 5554433 3344444444 7788999988753
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=75.85 Aligned_cols=128 Identities=9% Similarity=-0.158 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC--cccHHHHHHH
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE--VFRFNFLVSR 316 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~ 316 (806)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+-.+
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 34455566666666666666665543 232224444444556666666666666544320 0 110 1234445556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 047492 317 LLKENRLMEVFDLFMDMKEGQISPD--GVTMNTVLCFFCKAGMVDVAIELYKSRSEF 371 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 371 (806)
+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666666666654322132 223344445556666666666666666653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=66.98 Aligned_cols=100 Identities=10% Similarity=-0.069 Sum_probs=49.9
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHH
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 207 (806)
+.+...+..+...+...|++++|+..|++..+.. ..+..++..+...+...|++++|...+++..+..+.+..++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3344445555555555555555555555554431 113344444444555555555555555555554444444444555
Q ss_pred HHhhccCCHHHHHHHHHHhHh
Q 047492 208 KCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~ 228 (806)
.++...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555554444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-05 Score=79.96 Aligned_cols=129 Identities=11% Similarity=-0.015 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--------------chhHHHHHHHhhccccHHHHHHHHHhhhhccC
Q 047492 642 ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--------------SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQ 707 (806)
Q Consensus 642 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 707 (806)
..+..+...|.+.|++++|...+++..+...... ...+..+...+.+.|++++|...++++....|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455555566666666666666666655543322 35666666777777777777777777777777
Q ss_pred cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH-HHHHHHHH
Q 047492 708 SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA-CELFNRMR 771 (806)
Q Consensus 708 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A-~~~~~~m~ 771 (806)
.+...+..+..+|...|++++|+..|+++.+. .+.+...+..+..++.. |+.++| ..+|+.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888889999999999998886 34566778888888888 888887 44566654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=4e-05 Score=64.83 Aligned_cols=96 Identities=11% Similarity=-0.024 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
.+..+...+.+.|++++|.+.|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3444444444444444444444444433211 33344444444444444444444444444432 223344444444444
Q ss_pred hcCChhHHHHHHHHHhhc
Q 047492 459 KANKVEVGYLIHSELSRM 476 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~ 476 (806)
+.|++++|.+.+++..+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 445555555544444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=74.11 Aligned_cols=96 Identities=13% Similarity=-0.123 Sum_probs=45.8
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHhHhC----CCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CC-Ccch
Q 047492 202 TRTIMLKCLCKQKKIDEAVEYFQQLVSG----REC--VSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRD---DV-VKLE 271 (806)
Q Consensus 202 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~ 271 (806)
++..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+++..... +. ....
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444455555555555555555544332 101 112345555666666666666666665543210 00 0111
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhh
Q 047492 272 KAYDVWLRNLVRAGRLDLALEFLKSK 297 (806)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~~ 297 (806)
.++..+...+...|++++|.+.+++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 23344555555556666665555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-05 Score=66.49 Aligned_cols=119 Identities=13% Similarity=-0.009 Sum_probs=72.0
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
+...+..+...+...|++++|+..|++..... ..+...+..+...+...|++++|...++......+.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 44555666666667777777777777766542 12445566666666666777777776666666655555566666666
Q ss_pred hhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 047492 210 LCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSR 250 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (806)
+...|++++|.+.++...+... .+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666655433 234455555555554444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=5.1e-05 Score=63.83 Aligned_cols=114 Identities=13% Similarity=-0.027 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047492 380 YNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK 459 (806)
Q Consensus 380 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 459 (806)
+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.++...+.. +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 33334444444444444444444443221 133344444444444444444444444444432 2233444444444555
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 460 ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 460 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
.|++++|...++...+..+. +...+..+...+...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 55555555555544444332 3334444444444333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=69.73 Aligned_cols=95 Identities=9% Similarity=-0.016 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 047492 168 AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK 247 (806)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (806)
.+..+...+...|++++|...|+......+.+...+..+..++...|++++|...|+...+.++ .+...+..+..+|..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344444444555555555555555554444444555555555555555555555555544332 233444445555555
Q ss_pred cCCHHHHHHHHHHhhh
Q 047492 248 NSRFEQAGKLLEDFKD 263 (806)
Q Consensus 248 ~g~~~~A~~~~~~~~~ 263 (806)
.|++++|...|+....
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=71.14 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=50.5
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHH-HHhcCCH--HHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDA-LCKNSRF--EQAG 255 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A~ 255 (806)
.|++++|...++......+.+..++..+...|...|++++|...|++..+... .+...+..+... +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34444444444444444444444444444444444555555554444443322 223344444444 4444444 5555
Q ss_pred HHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 256 KLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
..|+..... .+.+...+..+...+...|++++|...|++..
T Consensus 102 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 102 AMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555444432 11123344444444445555555555554444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=69.39 Aligned_cols=95 Identities=8% Similarity=-0.131 Sum_probs=81.0
Q ss_pred hHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 047492 678 IGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV 757 (806)
Q Consensus 678 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 757 (806)
.+..+...+...|++.+|...++.+....|.+...|..+..+|...|++++|+..|+++.+. .+.+...|..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHH
Confidence 44556667888899999999999999888888999999999999999999999999999987 35567778888888888
Q ss_pred -hcHHHHHHHHHHHHHc
Q 047492 758 -SEIDHACELFNRMRRK 773 (806)
Q Consensus 758 -g~~~~A~~~~~~m~~~ 773 (806)
|++++|...|++....
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 9999999999988765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.9e-05 Score=78.17 Aligned_cols=130 Identities=13% Similarity=-0.067 Sum_probs=96.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC----------------hhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD----------------DYAYHVLLNALVEQGCFDAVAVVSKQIS 193 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (806)
+...+..+...|.+.|++++|+..|++.... .|+ ..+|..+..++.+.|++++|+..++...
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777788888888888888888888766 333 3677777777888888888888888888
Q ss_pred hcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 047492 194 MRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQA-GKLLEDFK 262 (806)
Q Consensus 194 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 262 (806)
+..+.+..++..+..+|...|++++|...|++..+..+ .+..++..+...+.+.|+.++| ..+++.|.
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776777777888888888888888888887776554 3456677777777777777777 34555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00014 Score=76.64 Aligned_cols=193 Identities=11% Similarity=-0.053 Sum_probs=139.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNGMYPS----------------MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT 675 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 675 (806)
-...+.+.|++++|++.|..+.+..-... ...+..+...|...|++++|.+.+..+.+......
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34567889999999999999987422211 12467789999999999999999988765322221
Q ss_pred -c----hhHHHHHHHhhccccHHHHHHHHHhhhh------ccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC
Q 047492 676 -S----FIGNTLLLHALKTRDLYEAWIRLRGMLI------NEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD 744 (806)
Q Consensus 676 -~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 744 (806)
. .+.+.+...+...|+.+.|...+..... .......++..++..|...|++++|...++++...-...+
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 1 2233344445567889999999888762 1223345778899999999999999999999876422222
Q ss_pred -----hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc--CC-CC-C--hhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 745 -----TYTYNILLRRLSV-SEIDHACELFNRMRRK--GY-EP-D--QWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 745 -----~~~~~~li~~~~~-g~~~~A~~~~~~m~~~--g~-~p-~--~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
...|..++..|.. |++++|..++++.... .+ .| . ...+..+...+...|++++|...+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4578888899999 9999999999887643 12 22 1 24566677788899999999988765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=5.6e-05 Score=69.45 Aligned_cols=129 Identities=13% Similarity=-0.066 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---------------chhHHHHHHHhhccccHHHHHHHHHhhhhccCc
Q 047492 644 YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT---------------SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQS 708 (806)
Q Consensus 644 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 708 (806)
+..+...+...|++++|...+++..+...... ...+..+...+...|++.+|...++.+....|.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 33444445555555555555555544322111 133444444555555555555555555555555
Q ss_pred chhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHH-HHHHHHHHc
Q 047492 709 KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHAC-ELFNRMRRK 773 (806)
Q Consensus 709 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~-~~~~~m~~~ 773 (806)
+...+..+..+|...|++++|+..|+++.+. .+.+...+..+..++.. ++.+++. ..|..|...
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666666677777777777777777777765 23345556666555555 6666555 445555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=60.59 Aligned_cols=95 Identities=9% Similarity=-0.014 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFN 493 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 493 (806)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...++...+.++. +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 44445555666666666666666666654 345566666666777777777777777776665544 5666677777777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 047492 494 KSNRADIAARLLVEMEE 510 (806)
Q Consensus 494 ~~~~~~~a~~~~~~m~~ 510 (806)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777777665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.2e-05 Score=62.28 Aligned_cols=98 Identities=11% Similarity=-0.039 Sum_probs=78.6
Q ss_pred CcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC-CChhhHHH
Q 047492 707 QSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYE-PDQWTFDI 784 (806)
Q Consensus 707 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~-p~~~~~~~ 784 (806)
|.+...+..+...|...|++++|+..++++.+. .+.+...|..+...+.. |++++|+..|++....... .+...+..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 345566777888888899999999999998886 35567788888888888 9999999999998876321 14677888
Q ss_pred HHhhhhcc-CCHHHHHHHHHhh
Q 047492 785 LKCGLYNC-LRTDEAERRLEEM 805 (806)
Q Consensus 785 l~~~~~~~-g~~~eA~~~l~~m 805 (806)
+..++.+. |++++|.+.+++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 88899999 9999999998764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00013 Score=59.84 Aligned_cols=99 Identities=11% Similarity=-0.034 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++.....+.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455566666667777777777777766542 124555666666666667777777777666666555555666666666
Q ss_pred hccCCHHHHHHHHHHhHhCC
Q 047492 211 CKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~ 230 (806)
...|++++|.+.++...+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 66666666666666666544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.002 Score=63.21 Aligned_cols=216 Identities=13% Similarity=0.076 Sum_probs=148.8
Q ss_pred cCCCh-HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCC----------hHHHHHHHHHH
Q 047492 564 HVKRP-DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMK----------ANLAWGFMREM 632 (806)
Q Consensus 564 ~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m 632 (806)
+.|.+ ++|+.+++.+. .+.|+..| +|+.--..+...+. +++++.+++.+
T Consensus 41 ~~~e~s~eaL~~t~~~L--~~nP~~yt------------------aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 41 QAGELDESVLELTSQIL--GANPDFAT------------------LWNCRREVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HTTCCSHHHHHHHHHHH--TTCTTCHH------------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH--HHCchhHH------------------HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 44555 57999999998 55788776 34433333322222 57888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcccc-HHHHHHHHHhhhhccCcc
Q 047492 633 RHNGMYPSMECYEELIKLLCSTK--NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRD-LYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 633 ~~~g~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~ 709 (806)
.... +-+..+|+.-..++.+.| .+++++++++.+.+.... +...++.-.......|. .++++..+..+....|.+
T Consensus 101 L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 101 LRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred HHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 8732 236677777777777777 488999999999886533 33445544455555666 588999999999999999
Q ss_pred hhhHHHHHHhhhcc--------------ccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh--h----------cHHHH
Q 047492 710 ISLLGQLIGVFSGC--------------IKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV--S----------EIDHA 763 (806)
Q Consensus 710 ~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g----------~~~~A 763 (806)
...|+.....+... +.++++++.++++... .|-|...|+-+-..+.+ | .++++
T Consensus 179 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 179 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 99998876665543 5677889999999886 46677778755444444 3 47888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHh-----hhhccCCHHHHHHHHHhh
Q 047492 764 CELFNRMRRKGYEPDQWTFDILKC-----GLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 764 ~~~~~~m~~~g~~p~~~~~~~l~~-----~~~~~g~~~eA~~~l~~m 805 (806)
++.++++.+. .||. .|+.+.. ++...|..+++..+++++
T Consensus 258 l~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l 301 (331)
T 3dss_A 258 LESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTL 301 (331)
T ss_dssp HHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 9999999875 4554 3443222 233578888888888765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.8e-05 Score=63.80 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=70.0
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCC--CCC----hhhHHHHH
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCF--PLD----TYTYNILL 752 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~li 752 (806)
+..+...+.+.|++++|+..++++....|.+..+++.+..+|...|++++|++.++++.+... .++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344455566666666666666666666666777777888888888888888888888876421 111 13566667
Q ss_pred HHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHH
Q 047492 753 RRLSV-SEIDHACELFNRMRRKGYEPDQWTFDI 784 (806)
Q Consensus 753 ~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (806)
.++.. |++++|++.|++.... .||..+...
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 77777 8889999888887764 455554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.9e-05 Score=62.05 Aligned_cols=98 Identities=11% Similarity=-0.041 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..++...+..+.+..++..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3445555666667777777777777766552 124556666666666777777777777776666665666666666666
Q ss_pred hccCCHHHHHHHHHHhHhC
Q 047492 211 CKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~ 229 (806)
...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666666543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.94 E-value=6.9e-05 Score=64.35 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhh
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLC 211 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 211 (806)
..+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|+..|+......+.+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 333344444444555555555555544331 1133344444444444555555555555444444444444444444444
Q ss_pred ccCCHHHHHHHHHHhH
Q 047492 212 KQKKIDEAVEYFQQLV 227 (806)
Q Consensus 212 ~~g~~~~a~~~~~~~~ 227 (806)
..|++++|.+.|+...
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00031 Score=57.55 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047492 415 LSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELS 474 (806)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 474 (806)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333344444444443333332 1223333333333444444444444443333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.92 E-value=7.2e-05 Score=66.21 Aligned_cols=99 Identities=7% Similarity=-0.066 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
+...+..+...|.+.|++++|+..|++..+.. .-+...|..+..++...|++++|+..|+...+..+.+...+..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44555555666666666666666666665542 11444555555556666666666666666665555555555555555
Q ss_pred hhccCCHHHHHHHHHHhHhC
Q 047492 210 LCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~ 229 (806)
+...|++++|.+.|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 55555555555555555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.90 E-value=6e-05 Score=61.30 Aligned_cols=97 Identities=12% Similarity=-0.136 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC--CccchHHHHH
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFE--NDVTRTIMLK 208 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~ 208 (806)
...+..+...+...|++++|+..|++..+.. ..+...+..+...+...|++++|...+++..+..+. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3344444445555555555555555554431 113334444444444555555555555555444433 3344444444
Q ss_pred Hhhcc-CCHHHHHHHHHHhHh
Q 047492 209 CLCKQ-KKIDEAVEYFQQLVS 228 (806)
Q Consensus 209 ~~~~~-g~~~~a~~~~~~~~~ 228 (806)
++... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00012 Score=62.25 Aligned_cols=97 Identities=10% Similarity=-0.025 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHh
Q 047492 640 SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGV 719 (806)
Q Consensus 640 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 719 (806)
+...+..+...+...|++++|...++..... .|.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------------------------------~~~~~~~~~~l~~~ 52 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----------------------------------NPLVAVYYTNRALC 52 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----------------------------------CcCcHHHHHHHHHH
Confidence 4455555666666666666666666665554 33344445555555
Q ss_pred hhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 047492 720 FSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR 772 (806)
Q Consensus 720 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~ 772 (806)
|...|++++|+..++++.+.. +.+...|..+..+|.. |++++|+..|++...
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 53 YLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555666666555542 3344555555555555 666666666655553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=7.9e-05 Score=61.77 Aligned_cols=92 Identities=16% Similarity=-0.018 Sum_probs=67.7
Q ss_pred HHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hc
Q 047492 681 TLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SE 759 (806)
Q Consensus 681 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~ 759 (806)
.+...+.+.|+..+|...++++....|.+...|..+..++...|++++|+..++++.+. -+.+...|..+..++.. |+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Confidence 34445556667777777777776666777777788888888888888888888888886 24456677777788888 88
Q ss_pred HHHHHHHHHHHHHc
Q 047492 760 IDHACELFNRMRRK 773 (806)
Q Consensus 760 ~~~A~~~~~~m~~~ 773 (806)
+++|+..+++..+.
T Consensus 101 ~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 101 ANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00017 Score=62.17 Aligned_cols=98 Identities=14% Similarity=-0.044 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD----DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTI 205 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (806)
+...+..+...+...|++++|+..|++..+. .|+ ...|..+..++...|++++|...++......+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3444444555555555555555555555543 333 3444445555555555555555555555544444444555
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhC
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~ 229 (806)
+..++...|++++|.+.|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.3e-05 Score=65.45 Aligned_cols=99 Identities=8% Similarity=-0.086 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHh
Q 047492 640 SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGV 719 (806)
Q Consensus 640 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 719 (806)
+...+..+...+...|++++|++.+++..+... .+...+..+...+...|++++|...++++....|.+...+..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 455677777788888888888888888877653 2455666777777778888888888888877777777777778888
Q ss_pred hhccccchhhHHHHHHHHHc
Q 047492 720 FSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 720 ~~~~g~~~~A~~~~~~~~~~ 739 (806)
|...|++++|+..|+++.+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88888888888888887775
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=61.44 Aligned_cols=94 Identities=16% Similarity=0.040 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC--C----HHhHHHHH
Q 047492 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV--S----GFMIGIVV 242 (806)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~~li 242 (806)
+..+-..+.+.|++++|+..|++..+..+.+..+|..+..+|...|++++|.+.+++.++.+... + ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444445555555554444443321100 0 12344444
Q ss_pred HHHHhcCCHHHHHHHHHHhh
Q 047492 243 DALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~ 262 (806)
..+...|++++|++.|++..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00034 Score=64.09 Aligned_cols=94 Identities=14% Similarity=-0.061 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGF 492 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 492 (806)
..+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|+...+..+. +...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 455556666666677777777776666654 345566666667777777777777777776665544 555666666666
Q ss_pred HhcCCHHHHH-HHHHHH
Q 047492 493 NKSNRADIAA-RLLVEM 508 (806)
Q Consensus 493 ~~~~~~~~a~-~~~~~m 508 (806)
...++.+++. ..+..|
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5555555444 333433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00044 Score=58.70 Aligned_cols=98 Identities=16% Similarity=0.026 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 047492 411 GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIH 490 (806)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 490 (806)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...++...+.++. +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 45566666666666777777777777666654 345566667777777777777777777777666544 6667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047492 491 GFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~ 510 (806)
.+...|++++|+..|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0046 Score=60.64 Aligned_cols=181 Identities=7% Similarity=-0.020 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHH
Q 047492 568 PDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM--KANLAWGFMREMRHNGMYPSMECYE 645 (806)
Q Consensus 568 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~ 645 (806)
+++++.+++.+... .|...+ +|+.-...+...+ .+++++.+++.+.+.. +-|...|+
T Consensus 90 l~~EL~~~~~~L~~--~PKny~------------------aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~ 148 (331)
T 3dss_A 90 VKAELGFLESCLRV--NPKSYG------------------TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWD 148 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHH------------------HHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 57788888888854 454443 4777777777777 4899999999999843 33677777
Q ss_pred HHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcc--------------ccHHHHHHHHHhhhhccCcch
Q 047492 646 ELIKLLCSTKN-YDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKT--------------RDLYEAWIRLRGMLINEQSKI 710 (806)
Q Consensus 646 ~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~ 710 (806)
.-..++...|. ++++++.++.+.+..+. +...++.....+... +.+++++..+..+....|.+.
T Consensus 149 ~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~ 227 (331)
T 3dss_A 149 YRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 227 (331)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 77777888888 59999999999987644 333444433333322 568899999999999999999
Q ss_pred hhHHHHHHhhhcc-----------ccchhhHHHHHHHHHcCCCCChhhHHHHHHHH-----hh-hcHHHHHHHHHHHHHc
Q 047492 711 SLLGQLIGVFSGC-----------IKVSQDIEGLQKMIEQCFPLDTYTYNILLRRL-----SV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 711 ~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-----~~-g~~~~A~~~~~~m~~~ 773 (806)
..|+-+-..+... +.++++++.++++.+. .||. .|+.+..+. .. |..+++...++++.+.
T Consensus 228 SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 228 SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 9998766666555 4578899999999985 5665 455433222 23 6778888888888864
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.79 E-value=4.9e-05 Score=63.97 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=52.0
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCC--CCC----hhhHHHHHHHHhh-hcH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCF--PLD----TYTYNILLRRLSV-SEI 760 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~li~~~~~-g~~ 760 (806)
..|+..+|...++++....|.+..++..+...|...|++++|+..++++.+... .++ ...|..+..++.. |++
T Consensus 16 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 95 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY 95 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence 333333333333333333344444555556666666666666666666665421 111 4556666666666 777
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHH
Q 047492 761 DHACELFNRMRRKGYEPDQWTFDILK 786 (806)
Q Consensus 761 ~~A~~~~~~m~~~g~~p~~~~~~~l~ 786 (806)
++|...|++..... |+......+.
T Consensus 96 ~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 96 KDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 77777777776643 3444444333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00087 Score=57.63 Aligned_cols=95 Identities=12% Similarity=-0.040 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047492 378 IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPG----KKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKF 453 (806)
Q Consensus 378 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 453 (806)
..+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...++...+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 33444444444444444444444444432 122 2333334444444444444444444444332 2233334444
Q ss_pred HHHHHhcCChhHHHHHHHHHhh
Q 047492 454 ISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 454 l~~~~~~~~~~~a~~~~~~~~~ 475 (806)
..++...|++++|...+++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00091 Score=70.20 Aligned_cols=131 Identities=9% Similarity=-0.111 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcc----cHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-Chhh
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVF----RFNFLVSRLLKENRLMEVFDLFMDMKE----GQISP-DGVT 344 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~~-~~~~ 344 (806)
+..+...|...|++++|.+.+.......+..++.. +.+.+-..+...|+.+++..+++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 34455555555555555555555443111111111 111111222234555555555554432 11111 1234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 345 MNTVLCFFCKAGMVDVAIELYKSRSEF--GL--SP-NGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 345 ~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
+..+...|...|++++|..+++..... +. .+ ...++..++..|...|++++|..++++..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455555666666666666666554321 10 11 12345555555556666666665555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00027 Score=58.43 Aligned_cols=92 Identities=7% Similarity=-0.027 Sum_probs=61.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 417 ILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
.+...+.+.|++++|...++..++.. +.+...+..+..++...|++++|...++...+.++. +...+..+...+...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34455566677777777777666654 345566666666777777777777777776666554 5666667777777777
Q ss_pred CHHHHHHHHHHHHH
Q 047492 497 RADIAARLLVEMEE 510 (806)
Q Consensus 497 ~~~~a~~~~~~m~~ 510 (806)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00054 Score=57.37 Aligned_cols=95 Identities=7% Similarity=0.012 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCC--CC----HHHHHHH
Q 047492 415 LSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKV--AS----ENTYIQL 488 (806)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 488 (806)
+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++......+. ++ ...|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444445555555555555555555443 334445555555555666666666655555443221 11 4456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047492 489 IHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 489 i~~~~~~~~~~~a~~~~~~m~~ 510 (806)
...+...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 6666667777777777766665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0005 Score=57.58 Aligned_cols=92 Identities=16% Similarity=0.000 Sum_probs=53.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC---ccchHHHHHH
Q 047492 137 LVMGYALAGKPDIALHLFGKMRFQGMDLDD----YAYHVLLNALVEQGCFDAVAVVSKQISMRGFEN---DVTRTIMLKC 209 (806)
Q Consensus 137 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~ 209 (806)
+...+...|++++|+..|++..+. .|+. ..+..+..++...|++++|...|+.+....+.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 444555666666666666666554 2222 255555556666666666666666666655544 3345555666
Q ss_pred hhccCCHHHHHHHHHHhHhCC
Q 047492 210 LCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~ 230 (806)
+...|++++|...|+.+.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 666666666666666665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00023 Score=75.05 Aligned_cols=128 Identities=12% Similarity=-0.064 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--------------chhHHHHHHHhhccccHHHHHHHHHhhhhccCcc
Q 047492 644 YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--------------SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 644 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
|..+...|.+.|++++|...|++..+...... ...+..+..++.+.|++.+|...++++....|.+
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 350 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 350 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 33444444445555555555554444322211 3455566666777777777777777777777777
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHH-HHHHHHHH
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHAC-ELFNRMRR 772 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~-~~~~~m~~ 772 (806)
...+..+..+|...|++++|+..|+++.+. .+.+...|..+..++.. |+.+++. .++..|..
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888888888888889988888886 34456677777777777 8877765 34555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.66 E-value=7.1e-05 Score=79.28 Aligned_cols=116 Identities=9% Similarity=-0.034 Sum_probs=51.5
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhH
Q 047492 651 LCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI 730 (806)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 730 (806)
+.+.|++++|.+.+++..+... .+...+..+...+.+.|+.++|...++++....|.+...+..+..+|...|++++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4445555555555555554421 123344444444445555555555555554444444444555555555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHH--Hhh-hcHHHHHHHHH
Q 047492 731 EGLQKMIEQCFPLDTYTYNILLRR--LSV-SEIDHACELFN 768 (806)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~li~~--~~~-g~~~~A~~~~~ 768 (806)
+.++++.+.. +.+...+..+..+ +.. |++++|++.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554431 2222333333333 333 44555544443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00019 Score=62.98 Aligned_cols=137 Identities=9% Similarity=-0.081 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHH
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHNGMY-PS----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNT 681 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 681 (806)
.++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.....+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------ 83 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------ 83 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------
Confidence 35566666777777777777777776652100 11 12455566666666777777666666543211000
Q ss_pred HHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCC-CC----ChhhHHHHHHHHh
Q 047492 682 LLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCF-PL----DTYTYNILLRRLS 756 (806)
Q Consensus 682 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~ 756 (806)
..+....++..+...|...|++++|+..+++..+... .. ....+..+...+.
T Consensus 84 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 84 -----------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 0001122344555566666666666666666554310 00 1234555555565
Q ss_pred h-hcHHHHHHHHHHHHH
Q 047492 757 V-SEIDHACELFNRMRR 772 (806)
Q Consensus 757 ~-g~~~~A~~~~~~m~~ 772 (806)
. |++++|...+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 6 677777666666543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00056 Score=57.26 Aligned_cols=93 Identities=14% Similarity=-0.031 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPS-M---ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTL 682 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 682 (806)
+..+...+...|++++|...|+...+.. |+ . ..+..+..++...|++++|...++.+.+...... ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4456677788888888888888887742 32 2 3566677778888888888888888776543221 2223333
Q ss_pred HHHhhccccHHHHHHHHHhhh
Q 047492 683 LLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 683 ~~~~~~~~~~~~a~~~~~~~~ 703 (806)
...+...|+.++|...++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00015 Score=63.74 Aligned_cols=104 Identities=9% Similarity=-0.037 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHH
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHN----GMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNT 681 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 681 (806)
.++..+...+...|++++|...+++..+. +..+ ...++..+..++...|++++|.+.+++..+.......
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----- 124 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD----- 124 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-----
Confidence 37788899999999999999999998763 1111 1345677778888899999999988887543111000
Q ss_pred HHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 682 LLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 682 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.+....++..+...|...|+.++|+..+++..+.
T Consensus 125 ------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 125 ------------------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------------------hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 0111234556677777778888888888777653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.62 E-value=9e-05 Score=65.40 Aligned_cols=109 Identities=10% Similarity=0.035 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC------CCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHH
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGHG------RQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLG 714 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 714 (806)
...+......+.+.|++++|+..|......- -.|+...+ ....+....++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 67 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------------VELDRKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------------HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------------HHHHHHHHHHHH
Confidence 3456666777777888888888777766530 00000000 001234455677
Q ss_pred HHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 715 QLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 715 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.+..+|.+.|++++|+..++++.+. -+.+...|..+..+|.. |++++|+..|++....
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKR-EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7777777888888888888888776 34556677777777777 8888888888877765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.60 E-value=7.2e-05 Score=61.64 Aligned_cols=82 Identities=12% Similarity=-0.037 Sum_probs=33.7
Q ss_pred CCcchHHHHHHHHHhcC---CCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 047492 180 GCFDAVAVVSKQISMRG---FENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGK 256 (806)
Q Consensus 180 ~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (806)
|++++|+..|++..+.+ +.+..++..+..+|...|++++|.+.|++..+..+ .+..++..+..++.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 33444444444444432 11223344444444444444444444444444332 223344444444444444444444
Q ss_pred HHHHhh
Q 047492 257 LLEDFK 262 (806)
Q Consensus 257 ~~~~~~ 262 (806)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00035 Score=73.57 Aligned_cols=129 Identities=10% Similarity=-0.038 Sum_probs=81.8
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC----------------hhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD----------------DYAYHVLLNALVEQGCFDAVAVVSKQIS 193 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (806)
....|..+...|.+.|++++|+..|++..+. .|+ ..+|..+..++.+.|++++|+..+++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3445666677777788888888888877654 222 3566666666677777777777777777
Q ss_pred hcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHh
Q 047492 194 MRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAG-KLLEDF 261 (806)
Q Consensus 194 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~ 261 (806)
+..+.+..+|..+..+|...|++++|...|++..+..+ .+..++..+..++.+.|+.+++. .++..|
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666677777777777777777777666543 23455666666666666666554 333444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0002 Score=72.89 Aligned_cols=139 Identities=10% Similarity=-0.037 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhh
Q 047492 642 ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS 721 (806)
Q Consensus 642 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (806)
..+..+...+.+.|++++|.+.+++..+.-.. . . .....+......+....++..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--------~----~-------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--------S----R-------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------H----H-------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--------C----c-------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777888888888888777642100 0 0 000011111234455667788888888
Q ss_pred ccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHH
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~ 800 (806)
+.|++++|+..++++.+. .+.+...|..+..+|.. |++++|+..|++..+... .+...+..+..++.+.|+.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999998888886 24456778888888888 899999988888887632 255666677777777888777764
Q ss_pred H
Q 047492 801 R 801 (806)
Q Consensus 801 ~ 801 (806)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0011 Score=58.23 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047492 447 DVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA 518 (806)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 518 (806)
...|..+..+|.+.|++++|...++...+.++. +...|..+..+|...|++++|...|++..+ +.|+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 356777888888889999999888888877655 778888888889999999999999988887 456543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00014 Score=59.93 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=46.9
Q ss_pred CcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 707 QSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 707 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|.+...+..+..+|...|++++|+..++++.+. .+.+...+..+..++.. |++++|+..+++....
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344556667777777777777788888877776 34456667777777777 8888888877777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00056 Score=69.51 Aligned_cols=137 Identities=14% Similarity=-0.026 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
.|..+...+.+.|++++|+..|++.++. .+.. ......+++.+. .+.+...+..+...+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~~--------~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAKL--------QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGGG--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 4667788899999999999999988761 0000 000000000000 0011233444444555
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACE 765 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~ 765 (806)
+.|++++|...++++....|.+...+..+..+|...|++++|+..|+++.+. .+.+...+..+...+.. ++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555566667777778888888888888888888876 23455666666666666 77766653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00038 Score=73.70 Aligned_cols=118 Identities=9% Similarity=-0.052 Sum_probs=74.2
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 047492 386 SLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEV 465 (806)
Q Consensus 386 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 465 (806)
.+.+.|++++|.+.|++..+.... +...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 345566777777777766654322 45666667777777777777777777777664 4456667777777777777777
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 047492 466 GYLIHSELSRMNKVASENTYIQLIHG--FNKSNRADIAARLLV 506 (806)
Q Consensus 466 a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 506 (806)
|.+.+++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777665543 33444444444 667777888887777
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00029 Score=70.80 Aligned_cols=144 Identities=7% Similarity=-0.026 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhh
Q 047492 642 ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS 721 (806)
Q Consensus 642 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (806)
..+..+...+.+.|++++|...|++...... +.. .+...++..++...+. ..++..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~-------~~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDF-------MFQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHH-------HHTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cch-------hhhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 4466777788889999999999998876532 211 1123333333332221 236777888888
Q ss_pred ccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC-hhhHHHHHhh-hhccCCHHHH
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD-QWTFDILKCG-LYNCLRTDEA 798 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~~~eA 798 (806)
+.|++++|+..++++.+. .+.+...|..+..+|.. |++++|...|++.... .|+ ...+..+..+ ....+..+++
T Consensus 242 ~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE-EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888886 34567778888888888 8888888888887643 343 3344444444 2345667777
Q ss_pred HHHHHhhC
Q 047492 799 ERRLEEMF 806 (806)
Q Consensus 799 ~~~l~~m~ 806 (806)
.+++.+|+
T Consensus 319 ~~~~~~~l 326 (338)
T 2if4_A 319 KEMYKGIF 326 (338)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 77777664
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00043 Score=69.56 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhh
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLC 211 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 211 (806)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ....|..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---------~~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---------HHHHHHHHHHHHH
Confidence 34555666667778888888888877654 333221 00111111111111 0124555555666
Q ss_pred ccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcc-hhhHHHHHHH-HHHcCCHHH
Q 047492 212 KQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKL-EKAYDVWLRN-LVRAGRLDL 289 (806)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~-~~~~g~~~~ 289 (806)
+.|++++|...++..++... .+...|..+..+|...|++++|...|++.... .|+ ...+..+... ....+..++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555432 34455555666666666666666666665532 222 2223333322 223344555
Q ss_pred HHHHHHhhh
Q 047492 290 ALEFLKSKN 298 (806)
Q Consensus 290 a~~~~~~~~ 298 (806)
+...|..+.
T Consensus 318 a~~~~~~~l 326 (338)
T 2if4_A 318 QKEMYKGIF 326 (338)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 555665554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0012 Score=56.36 Aligned_cols=23 Identities=13% Similarity=-0.234 Sum_probs=11.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 047492 612 LIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
....+.+.|++++|+..|++.++
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~ 39 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAME 39 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444455555555555555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0015 Score=55.80 Aligned_cols=28 Identities=14% Similarity=-0.100 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 047492 133 FNDTLVMGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 133 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
.+......+.+.|++++|+..|++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3444555666777888888888777655
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00084 Score=54.84 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=51.7
Q ss_pred HHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 695 AWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 695 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|...++++....|.+...+..+...|...|++++|+..++++.+. .+.+...|..+..+|.. |++++|...|++....
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555555566666677777777777777777777777765 24445666777777777 7777777777776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=57.76 Aligned_cols=90 Identities=9% Similarity=-0.063 Sum_probs=56.4
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC-------hhh
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD-------QWT 781 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~-------~~~ 781 (806)
...+..+...+...|++++|+..++++.+. .+.+...|..+..++.. |++++|+..+++.... .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 344556666777777777777777777765 34456667777777777 7777777777777654 333 334
Q ss_pred HHHHHhhhhccCCHHHHHHHH
Q 047492 782 FDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 782 ~~~l~~~~~~~g~~~eA~~~l 802 (806)
+..+..++...|+.++|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 445555555556555554433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.001 Score=69.74 Aligned_cols=133 Identities=7% Similarity=-0.101 Sum_probs=88.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 047492 613 IVGLCKAMKANLAWGFMREMRHN---GMYP----SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH 685 (806)
Q Consensus 613 i~~~~~~~~~~~A~~~~~~m~~~---g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 685 (806)
+..+...|++++|+.++++.++. -+-| ...+++.+..+|...|++++|..++++.++.
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i--------------- 380 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG--------------- 380 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------
Confidence 34456678888888888776652 1222 2346777777788888888888877766432
Q ss_pred hhccccHHHHHHHHHhhh-hccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcC---CCCCh----hhHHHHHHHHhh
Q 047492 686 ALKTRDLYEAWIRLRGML-INEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQC---FPLDT----YTYNILLRRLSV 757 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~----~~~~~li~~~~~ 757 (806)
.+... ...|....+++.|..+|..+|++++|+.+++++.+.- ..||. .+.+.+..++..
T Consensus 381 -------------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 381 -------------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp -------------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 11111 1223334567888889999999999999988877631 23442 344455566666
Q ss_pred -hcHHHHHHHHHHHHHc
Q 047492 758 -SEIDHACELFNRMRRK 773 (806)
Q Consensus 758 -g~~~~A~~~~~~m~~~ 773 (806)
|.+++|..+|.++++.
T Consensus 448 ~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 448 LRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 8999999999999864
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0011 Score=54.20 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 185 VAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
|+..|+...+..+.+...+..+...+...|++++|...|+...+... .+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444455555555555555555555555544332 233444555555555555555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0016 Score=55.51 Aligned_cols=70 Identities=7% Similarity=-0.041 Sum_probs=31.1
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcccc----------HHHHHHHHHhhhhccCcchhhHHHHHHhhhc
Q 047492 653 STKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRD----------LYEAWIRLRGMLINEQSKISLLGQLIGVFSG 722 (806)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (806)
+.+.+++|.+.++...+... .+...+..+...+...++ +++|+..++++..-.|.....|+.+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34445555555555554432 133333333334444333 2344444444444444444444444444443
Q ss_pred c
Q 047492 723 C 723 (806)
Q Consensus 723 ~ 723 (806)
.
T Consensus 93 l 93 (158)
T 1zu2_A 93 F 93 (158)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0095 Score=64.16 Aligned_cols=172 Identities=11% Similarity=0.011 Sum_probs=127.4
Q ss_pred CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCC----------hHHHHHHHHHHHhC
Q 047492 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMK----------ANLAWGFMREMRHN 635 (806)
Q Consensus 566 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~ 635 (806)
...++|++.++++.. +.|+..+ +|+.--.++...|+ +++++..++.+.+.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~t------------------aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~ 102 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFAT------------------LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 102 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHH------------------HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHH------------------HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh
Confidence 445788999999985 4677766 47666666666666 89999999999984
Q ss_pred CCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc-cHHHHHHHHHhhhhccCcchhh
Q 047492 636 GMYPSMECYEELIKLLCSTK--NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR-DLYEAWIRLRGMLINEQSKISL 712 (806)
Q Consensus 636 g~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~ 712 (806)
. +-+...|..-..++.+.| +++++.+.++++.+.+.. +...|+.-.....+.| ..+++...+.++....+.+...
T Consensus 103 ~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 103 N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp C-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred C-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence 2 336777888888888999 679999999999987643 4455665555666667 7889999999999889999999
Q ss_pred HHHHHHhhhcc--------------ccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcH
Q 047492 713 LGQLIGVFSGC--------------IKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEI 760 (806)
Q Consensus 713 ~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~ 760 (806)
|+....++.+. +.++++++.++++... .|-|...|+-+-..+.+ ++.
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCc
Confidence 98877766542 4567777777777765 35566677766666666 553
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.14 E-value=1e-07 Score=94.35 Aligned_cols=235 Identities=11% Similarity=0.125 Sum_probs=151.0
Q ss_pred cchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHH
Q 047492 129 HQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLK 208 (806)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 208 (806)
..+.+|+.|..++...+...+|++.|-+.. |+..|..++.+..+.|.++.-...+...++. ..++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHH
Confidence 356778888888888888888887764443 6778889999999999999888887776654 455666778888
Q ss_pred HhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHH
Q 047492 209 CLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLD 288 (806)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (806)
+|++.++..+.++.+. .|+..-...+.+-|...|.++.|.-+|..+.. |..|...+++.|++.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHHHHHH
Confidence 9999888766544321 24555566777888888888888777765543 333444455556655
Q ss_pred HHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 047492 289 LALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 289 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
.|.+.-++ ..++.||..+-.+|...+.+.-|.-.--.+.- .......++..|-..|.+++-+.+++.-
T Consensus 188 ~AVdaArK-------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 188 AAVDGARK-------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSTTTTTT-------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHh-------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55442221 24567777777777777776655443322222 1122334555666777777777777765
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 047492 369 SEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLK 401 (806)
Q Consensus 369 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 401 (806)
.... ....-.|+-|.-.|++- +.++..+.++
T Consensus 256 lglE-rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred hCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 4221 24555666666666654 3444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00028 Score=57.23 Aligned_cols=64 Identities=19% Similarity=0.085 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCC
Q 047492 167 YAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 230 (806)
..+..+...+...|++++|...|++..+..+.+..++..+..++...|++++|.+.+++..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3444444455555555555555555555544444455555555555555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.023 Score=61.14 Aligned_cols=149 Identities=11% Similarity=-0.056 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 047492 358 VDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS----------THEAYEVLKNSIDHGLFPGKKTLSILADALCRDG- 426 (806)
Q Consensus 358 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g- 426 (806)
-++|++.++.+.+.. +-+..+|+.--..+...|+ ++++++.++++.+...+ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 345666776666543 2234455544444444444 67777777777766544 6667776666666777
Q ss_pred -ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---------
Q 047492 427 -KFEQMKDLVIFALERNIKLRDVTYDKFISALCKAN-KVEVGYLIHSELSRMNKVASENTYIQLIHGFNKS--------- 495 (806)
Q Consensus 427 -~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------- 495 (806)
+++++.+.++++.+.. +-+...|+.-...+.+.| .++++.+.++.+.+.++. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 5578888888877776 456677776666666777 777888888877777666 777777766666553
Q ss_pred -----CCHHHHHHHHHHHHH
Q 047492 496 -----NRADIAARLLVEMEE 510 (806)
Q Consensus 496 -----~~~~~a~~~~~~m~~ 510 (806)
+.++++++.+.+.+.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHh
Confidence 335566666665554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.002 Score=67.58 Aligned_cols=105 Identities=11% Similarity=-0.128 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhH
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRH-----NGMY-P-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIG 679 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 679 (806)
.+++.|...|...|++++|..++++.++ .|-. | ...+++.|...|...|++++|..++++..+.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i--------- 422 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI--------- 422 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------
Confidence 4789999999999999999999998775 2321 2 3456888999999999999999998887532
Q ss_pred HHHHHHhhccccHHHHHHHHHhhhhcc-CcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 680 NTLLLHALKTRDLYEAWIRLRGMLINE-QSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 680 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
++...... |....+.+.+...+...+.+.+|..+++++.+.
T Consensus 423 -------------------~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 423 -------------------LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp -------------------HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 112223355566666777777788888777663
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0016 Score=51.43 Aligned_cols=84 Identities=14% Similarity=0.012 Sum_probs=54.3
Q ss_pred CcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcC-CCCChhhHHH
Q 047492 707 QSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKG-YEPDQWTFDI 784 (806)
Q Consensus 707 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g-~~p~~~~~~~ 784 (806)
|.+...+..+...|...|++++|+..|+++.+.. +.+...|..+..+|.. |++++|+..|++..+.. -.++......
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 4556667777777777788888888888877762 4456677777777777 88888888777766542 1234444444
Q ss_pred HHhhhhc
Q 047492 785 LKCGLYN 791 (806)
Q Consensus 785 l~~~~~~ 791 (806)
+...+.+
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.029 Score=47.28 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=41.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----c
Q 047492 424 RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK----S 495 (806)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 495 (806)
..+..++|.++|++..+.| +...+..|-..|.. .++.++|.++|+...+.+ +...+..|...|.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCC
Confidence 3334444444444444433 23334444444444 455555555555554443 44455555555555 5
Q ss_pred CCHHHHHHHHHHHHHCC
Q 047492 496 NRADIAARLLVEMEENG 512 (806)
Q Consensus 496 ~~~~~a~~~~~~m~~~~ 512 (806)
++.++|...|++..+.|
T Consensus 111 ~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 56666666666665544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.03 Score=47.15 Aligned_cols=110 Identities=10% Similarity=-0.033 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHH
Q 047492 322 RLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG----DGSTHEAY 397 (806)
Q Consensus 322 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 397 (806)
+.++|++.|++..+.|. |+.. +-..|...+.+++|.+.|++..+.| +...+..|-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34555555555555441 2221 3333444444555555555555432 34444444444444 45555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 047492 398 EVLKNSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERN 442 (806)
Q Consensus 398 ~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 442 (806)
+.|++..+.| +...+..|-..|.. .++.++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555443 33444444444444 445555555555554444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.004 Score=53.01 Aligned_cols=98 Identities=10% Similarity=0.129 Sum_probs=61.2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 047492 426 GKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK----------VEVGYLIHSELSRMNKVASENTYIQLIHGFNKS 495 (806)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 495 (806)
+.+++|.+.++...+.. +.+...|..+-.++...++ +++|+..|++..+.++. +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 34445555555555443 3344444444444444443 45777777777776665 666777777777765
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047492 496 -----------NRADIAARLLVEMEENGHKPTRALHRAVIRCL 527 (806)
Q Consensus 496 -----------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 527 (806)
|++++|++.|++..+ +.|+...|...+...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 478888888888887 677777666555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0051 Score=47.21 Aligned_cols=63 Identities=21% Similarity=0.081 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMR 195 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (806)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 334444444444444444444444444331 112233333334444444444444444444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.015 Score=44.48 Aligned_cols=55 Identities=13% Similarity=0.133 Sum_probs=21.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047492 420 DALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 475 (806)
..+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333444444444444333332 22233333444444444444444444444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.019 Score=45.03 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+...+..+...|.+.|++++|...|+...+.++. +...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666777777777777777777777766655 566777777777777777777777777664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.077 Score=49.91 Aligned_cols=106 Identities=12% Similarity=0.038 Sum_probs=80.9
Q ss_pred cHHHHHHHHHhhhhccCc--chhhHHHHHHhhhcc-----ccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh--hcHH
Q 047492 691 DLYEAWIRLRGMLINEQS--KISLLGQLIGVFSGC-----IKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV--SEID 761 (806)
Q Consensus 691 ~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g~~~ 761 (806)
....|...++++.+..|. +-..+..|...|... |+.++|.+.|+++++....-+..++......++. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 467788888888888887 566899999999884 9999999999999996322246777777777776 8999
Q ss_pred HHHHHHHHHHHcCCC--CChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 762 HACELFNRMRRKGYE--PDQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 762 ~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
++...+++....... |+....+ .|...+|..++++
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~ 294 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAH 294 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHH
Confidence 999999999988776 6644444 3344666666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.21 Score=57.09 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
..|..+...+.+.|+++.|++.|..+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34444444444444444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.023 Score=44.37 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=27.6
Q ss_pred HhhccccHHHHHHHHHhhhhccCcchh-hHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKIS-LLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.+...|++.+|...++++....|.+.. .+..+..+|...|++++|+..|+++.+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555544444444 4445555555555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0045 Score=62.02 Aligned_cols=265 Identities=13% Similarity=0.107 Sum_probs=121.2
Q ss_pred CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHH
Q 047492 199 NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWL 278 (806)
Q Consensus 199 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 278 (806)
.+..|..|.++....+.+.+|.+.| ++. .|...|..++....+.|.+++-...+...++. .-+...=+.++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHH
Confidence 3445555555555555444443211 111 12334455555555555555555555444332 11222333444
Q ss_pred HHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh
Q 047492 279 RNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMV 358 (806)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 358 (806)
-+|++.++..+-.+++. .|+..-...+.+-|...|.++.|.-+|..+-. |.-|...+.+.|++
T Consensus 124 ~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~y 186 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGG
T ss_pred HHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHH
Confidence 44444444333222111 13333344444444444444444433332211 12222222333333
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047492 359 DVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFA 438 (806)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (806)
..|.+.-++ ..++.||..+-.+|...+.+.-|.-.--.+.-.. .....++..|...|.+++...+++.-
T Consensus 187 q~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 333322111 2355677777777777777766554433333111 11223455667777777777777765
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC-------CHHHHHHHHHHHHhcCCHHHHH
Q 047492 439 LERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA-------SENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 439 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~ 502 (806)
.... +....+|+-|.-.|+|- ++++..+-++..-.+--.| ....|.-++-.|.+-.+++.|.
T Consensus 256 lglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5332 45666777777777765 3444443332221111111 2334555555566555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.029 Score=43.74 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=49.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYP-SME-CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQ 673 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (806)
.....+.+.|++++|+..|++..+. .| +.. .+..+..+|...|++++|.+.+++..+....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3556778899999999999998874 44 456 7888888899999999999999998877543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.13 Score=50.70 Aligned_cols=76 Identities=9% Similarity=-0.033 Sum_probs=63.0
Q ss_pred hccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhH
Q 047492 704 INEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTF 782 (806)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~ 782 (806)
...+.+..++.++...+...|++++|+..++++...+ |+...|..+...+.. |++++|.+.|++.... .|...||
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 4557788888888888888899999999999999974 777777777777878 9999999999988876 5666666
Q ss_pred H
Q 047492 783 D 783 (806)
Q Consensus 783 ~ 783 (806)
.
T Consensus 347 ~ 347 (372)
T 3ly7_A 347 Y 347 (372)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.026 Score=58.02 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=50.3
Q ss_pred chhhHHHHHHhhhccccchhhHHHHHHHHHcC---CCCC----hhhHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 047492 709 KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQC---FPLD----TYTYNILLRRLSV-SEIDHACELFNRMRR 772 (806)
Q Consensus 709 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~li~~~~~-g~~~~A~~~~~~m~~ 772 (806)
...+++.|..+|..+|++++|+.+++++.+.- ..|+ ..+|+.|...|.. |++++|..++++..+
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34567888999999999999999999887631 2333 4578889999998 999999999888764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.11 Score=51.08 Aligned_cols=62 Identities=8% Similarity=-0.075 Sum_probs=28.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 234 SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
+..+|.++.-.+...|++++|...+++.... + |+...|..+-..+.-.|++++|.+.|++..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444445555555555555444 1 333344444444444555555555554443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.95 Score=39.05 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=42.7
Q ss_pred hcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHH
Q 047492 143 LAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEY 222 (806)
Q Consensus 143 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 222 (806)
..|+++.|.++.+.+. +...|..+.......|+++-|++.|..... +..+.-.|...|+.+...++
T Consensus 17 ~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444431 334455555555555555555444444432 22333333344444444443
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 223 FQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLED 260 (806)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (806)
-+....+|- ++.....+...|+++++.++|.+
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333332 33333344445555555555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.032 Score=57.37 Aligned_cols=91 Identities=12% Similarity=-0.028 Sum_probs=68.6
Q ss_pred cCCChHHHHHHHHHHHH---CCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh-----C
Q 047492 564 HVKRPDLARAVYELMQR---SGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH-----N 635 (806)
Q Consensus 564 ~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~ 635 (806)
..|++++|+.++++..+ .-+.|+.... ..+++.|..+|...|++++|+.++++.++ .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~---------------a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l 374 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYM---------------LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY 374 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHH---------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc
Confidence 45789999999998664 2233433220 12589999999999999999999998775 2
Q ss_pred CC-CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 636 GM-YP-SMECYEELIKLLCSTKNYDMVVGVMNHLEG 669 (806)
Q Consensus 636 g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 669 (806)
|. .| ...+|+.+...|...|++++|..++++..+
T Consensus 375 G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 375 PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 32 22 245688899999999999999999988754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.093 Score=54.04 Aligned_cols=96 Identities=9% Similarity=-0.128 Sum_probs=71.4
Q ss_pred HHhhhcCCChHHHHHHHHHHHHC---CCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh-
Q 047492 559 IDGAGHVKRPDLARAVYELMQRS---GLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH- 634 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~- 634 (806)
+..+.+.|++++|+.++++..+. -+.|+... + ..+++.+..+|...|++++|+.++++.++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~---~------------~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i 358 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIY---Q------------LKVLDCAMDACINLGLLEEALFYGTRTMEP 358 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH---H------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchH---H------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34456778999999999998753 22333321 1 12588999999999999999999998775
Q ss_pred ----CC-CCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 635 ----NG-MYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEG 669 (806)
Q Consensus 635 ----~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 669 (806)
.| -.| ...+++.+...|...|++++|..++++..+
T Consensus 359 ~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 359 YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22 122 245688899999999999999999888754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.37 Score=54.97 Aligned_cols=157 Identities=10% Similarity=0.021 Sum_probs=89.1
Q ss_pred HHHHhCCChhHHHH-HHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc
Q 047492 104 KLLHCAKLTPLMVD-FLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF 182 (806)
Q Consensus 104 ~~l~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 182 (806)
......++++.|.+ ++..++ +......++..+.+.|.+++|+++.+.-. .-+......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445677887766 553322 01222667777777888888876653211 112334567788
Q ss_pred chHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 183 DAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
+.|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.. |..+...+...|+.+...++-+...
T Consensus 669 ~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 669 TLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 8887775433 4566788888888888888888888887643 3334444444555555444443333
Q ss_pred hCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 263 DRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 263 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
.. + -++....+|.+.|++++|++++.++.+
T Consensus 735 ~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 735 TT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred Hc-C------chHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 32 1 133344445555555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.072 Score=54.87 Aligned_cols=60 Identities=8% Similarity=-0.070 Sum_probs=27.6
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHHc---CCCCC----hhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIEQ---CFPLD----TYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
+++.|+.+|...|++++|+.+++++.+. -..|+ ..+++.|...|.. |++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444455555555555555544431 01222 2345555555555 55555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=1.1 Score=36.16 Aligned_cols=138 Identities=16% Similarity=0.130 Sum_probs=67.0
Q ss_pred HcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHH
Q 047492 283 RAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAI 362 (806)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 362 (806)
-.|..++..++..+... ..+..-||-+|--....-+-+-..++++..-+. -|.. ..|++....
T Consensus 19 ldG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 34555555555555543 123344555555444444544444444444321 1211 123333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 363 ELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
..+-.+- .+...++..++.+...|+-++-.+++.++.. +..|++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3222211 2333444455556666666666666666433 224555666666666666666666666666665555
Q ss_pred C
Q 047492 443 I 443 (806)
Q Consensus 443 ~ 443 (806)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.31 Score=37.29 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047492 444 KLRDVTYDKFISALCKANK---VEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN 511 (806)
Q Consensus 444 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 511 (806)
+.+...+..+..++...++ .++|..++++..+.++. +......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455566666666654433 57777777777777666 6777777777778888888888888887764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.17 Score=42.56 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047492 429 EQMKDLVIFALERNIKLRDVTYDKFISALCKAN---KVEVGYLIHSELSRMN-KVASENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
..+.+-|.+..+.+ .++..+...+..++++++ +.+++..+++++.+.+ +.-+...+..+.-+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 44555555555555 366667667777777777 5557777777777664 211345556666677888888888888
Q ss_pred HHHHHHCCCCCCHH
Q 047492 505 LVEMEENGHKPTRA 518 (806)
Q Consensus 505 ~~~m~~~~~~p~~~ 518 (806)
++.+.+ +.|+..
T Consensus 94 ~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 94 VRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHH--HCTTCH
T ss_pred HHHHHh--cCCCCH
Confidence 888877 566543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.91 E-value=1.7 Score=37.55 Aligned_cols=100 Identities=9% Similarity=0.089 Sum_probs=55.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHH
Q 047492 245 LCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLM 324 (806)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 324 (806)
....|+++.|.++.+.+. +...|..+.......|+++-|.+.|..... |..+.-.|.-.|+.+
T Consensus 15 AL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 345566666666655442 234566666666666666666666665543 444444555556665
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 047492 325 EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKS 367 (806)
Q Consensus 325 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 367 (806)
...++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5554444443332 134444455556666666666643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.86 E-value=1.2 Score=35.84 Aligned_cols=67 Identities=9% Similarity=-0.012 Sum_probs=42.7
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 047492 306 EVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL 373 (806)
Q Consensus 306 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 373 (806)
+...+...++.+...|+.++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455566666777777777777766543 2345666666667777777777777777777666664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.2 Score=38.33 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=37.0
Q ss_pred ChhhHHHHHHHHHhcCC---cchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCC
Q 047492 165 DDYAYHVLLNALVEQGC---FDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRE 231 (806)
Q Consensus 165 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 231 (806)
++..+..+..++...++ .++|..++++..+..+.+..+...+...+.+.|++++|...|+.+.+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44444455555443322 45666666666665555555555556666666666666666666655443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.33 Score=40.79 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhC
Q 047492 624 LAWGFMREMRHNGMYPSMECYEELIKLLCSTK---NYDMVVGVMNHLEGH 670 (806)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 670 (806)
.+.+.|.+..+.|. ++..+...+..++++++ +.++++.+++.+.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~ 64 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK 64 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 34444444444332 44455445555555555 344555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.06 E-value=0.41 Score=37.53 Aligned_cols=23 Identities=4% Similarity=-0.353 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHH
Q 047492 135 DTLVMGYALAGKPDIALHLFGKM 157 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m 157 (806)
..+...+.+.+++..|+..|+..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 33444444444444444444444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.70 E-value=0.56 Score=36.77 Aligned_cols=59 Identities=8% Similarity=-0.037 Sum_probs=24.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHN------GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEG 669 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 669 (806)
.+...+.+.|+++.|...|+...+. +-.+....+..+..++.+.|+++.|...++++.+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444555554444443331 0011233344444444444444444444444433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.45 E-value=17 Score=40.87 Aligned_cols=25 Identities=8% Similarity=-0.138 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047492 415 LSILADALCRDGKFEQMKDLVIFAL 439 (806)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~ 439 (806)
|..++....+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344445555566666666666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.84 E-value=0.86 Score=37.69 Aligned_cols=102 Identities=10% Similarity=-0.022 Sum_probs=59.7
Q ss_pred hhHHHHHHHhhccccH------HHHHHHHHhhhhccCcchh-hHHHHHH------hhhccccchhhHHHHHHHHHcCCCC
Q 047492 677 FIGNTLLLHALKTRDL------YEAWIRLRGMLINEQSKIS-LLGQLIG------VFSGCIKVSQDIEGLQKMIEQCFPL 743 (806)
Q Consensus 677 ~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~~~~ 743 (806)
-++-..+...-+.|+. +.-...++++....||+.. .|...|. .|...++.++|.++|+.+.+.+ +.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h-Kk 92 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC-KK 92 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-HH
Confidence 3444444444455665 6667777777777776532 2222222 2234578888888888887652 22
Q ss_pred ChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCCh
Q 047492 744 DTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQ 779 (806)
Q Consensus 744 ~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~ 779 (806)
=...|-....-=.+ |+.++|.+++.+....+.+|..
T Consensus 93 FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 93 FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 24444443333344 8888888888888777666544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=1.3 Score=41.63 Aligned_cols=122 Identities=7% Similarity=-0.058 Sum_probs=86.1
Q ss_pred HHHHHHHHhHhccCCcchhHHHHHHH-HHHhc--CC------hhhHHHHHHHHhhcCCCCC---hhhHHHHHHHHHh---
Q 047492 114 LMVDFLENYKKDRYYHQVRFNDTLVM-GYALA--GK------PDIALHLFGKMRFQGMDLD---DYAYHVLLNALVE--- 178 (806)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~~li~-~~~~~--~~------~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~--- 178 (806)
.....+..+... .+..-.|..++. .+... |. ...|...+++..+. .|+ ..+|..+...|..
T Consensus 139 ~~~~~l~~~~~~--dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp 214 (301)
T 3u64_A 139 RLHKVLSRCTRV--DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPE 214 (301)
T ss_dssp HHHHHHTTCCGG--GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCT
T ss_pred hHHHHHHHcCcc--ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCC
Confidence 344444444332 334455555554 33333 32 45677777887776 555 5588888888888
Q ss_pred --cCCcchHHHHHHHHHhcCCC-CccchHHHHHHhhcc-CCHHHHHHHHHHhHhCCCC--CCHHhHH
Q 047492 179 --QGCFDAVAVVSKQISMRGFE-NDVTRTIMLKCLCKQ-KKIDEAVEYFQQLVSGREC--VSGFMIG 239 (806)
Q Consensus 179 --~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~~ 239 (806)
-|+.++|.+.|++..+.++. +..++......++.. |+.+++.+.+++.....+. |+....+
T Consensus 215 ~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 215 SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 48999999999999999885 478888889988884 9999999999999988776 6644444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.48 E-value=1.7 Score=34.92 Aligned_cols=86 Identities=16% Similarity=0.059 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHhCCCC-CCchhHHHHHHHhhccccHHHHHHH
Q 047492 623 NLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDM---VVGVMNHLEGHGRQ-VTSFIGNTLLLHALKTRDLYEAWIR 698 (806)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 698 (806)
..+.+-|.+....|. ++..+-..+..++.++.+... ++.+++.+.+.+.+ -..-....+..++++.|++..|.+.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344445554444443 666666667777777776655 77777777665311 1122223333445555555555555
Q ss_pred HHhhhhccCcc
Q 047492 699 LRGMLINEQSK 709 (806)
Q Consensus 699 ~~~~~~~~~~~ 709 (806)
++.++...|.+
T Consensus 97 ~~~lL~~eP~n 107 (126)
T 1nzn_A 97 VRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHhCCCC
Confidence 55555444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.00 E-value=1.6 Score=35.11 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 427 KFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEV---GYLIHSELSRMN-KVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
....+.+-+......| .++..+-..+..++.++.+... ++.+++++.+.+ +.-.......|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555555555555 3666666667777777776655 777777776654 1113444556677888888888888
Q ss_pred HHHHHHHHCCCCCCH
Q 047492 503 RLLVEMEENGHKPTR 517 (806)
Q Consensus 503 ~~~~~m~~~~~~p~~ 517 (806)
+.++.+.+ +.|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 88888887 56653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.05 E-value=17 Score=37.41 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=47.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHhC--CCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCcch--hh
Q 047492 204 TIMLKCLCKQKKIDEAVEYFQQLVSG--RECVS---GFMIGIVVDALCKNSRFEQAGKLLEDFKDR---DDVVKLE--KA 273 (806)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~--~~ 273 (806)
..|...+...|++.+|.+++..+... +.... ...+..-+..|...+++..|..++...... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556666677777777776666432 11111 234555556666666666666666554321 0111211 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhh
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSK 297 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~ 297 (806)
+..++..+...+++.+|-+.|.++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444455555555555544443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.88 E-value=4.3 Score=33.66 Aligned_cols=54 Identities=7% Similarity=-0.064 Sum_probs=29.4
Q ss_pred CCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC
Q 047492 180 GCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233 (806)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (806)
++.++|.++|+.+......=...|.....--.+.|++..|.+++...+..+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 556666666666655411112233333333446677777777777777666544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.26 E-value=21 Score=36.56 Aligned_cols=94 Identities=14% Similarity=-0.005 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHh----CCCCCCH--HH
Q 047492 311 NFLVSRLLKENRLMEVFDLFMDMKEG--QISPD---GVTMNTVLCFFCKAGMVDVAIELYKSRSE----FGLSPNG--IV 379 (806)
Q Consensus 311 ~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~--~~ 379 (806)
..|...+...|++.+|.+++.++... |.... ...+...++.|...+++..|..+++.+.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556667777777777777776532 22111 23455566777777888887777776532 2212221 34
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 380 YNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 380 ~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
+...+..+...+++.+|.+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555666667777777777776664
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.73 E-value=2 Score=47.10 Aligned_cols=53 Identities=13% Similarity=-0.073 Sum_probs=37.7
Q ss_pred HHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHH
Q 047492 717 IGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRM 770 (806)
Q Consensus 717 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m 770 (806)
+..+...|+++-|+++.+++... .|-+-.+|..|..+|.. |+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445567777778887777775 34456778888888888 8888887776665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.60 E-value=36 Score=38.29 Aligned_cols=179 Identities=11% Similarity=-0.009 Sum_probs=78.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhc
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYE--ELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALK 688 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 688 (806)
.+.-++...|+.+.+..+.+.+... ..|....-. .+.-+|+..|+.....+++..+.... ..+..-.-.+.-+...
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhc
Confidence 3344444567777777776666652 122111111 22334556677666666777666432 1111111111112222
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccc-hhhHHHHHHHHHcCCCCChhhHHHHHHHHhh---h------
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKV-SQDIEGLQKMIEQCFPLDTYTYNILLRRLSV---S------ 758 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---g------ 758 (806)
.|+.+...+.+........+.+.---.+.-+....|.. .+++..+..+.. .+|..+-...+.+++. |
T Consensus 607 ~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp SSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccc
Confidence 33333333333333332333332222222233333332 567778887765 3455544445555554 2
Q ss_pred -cHHHHHHHHHHHHH-cCCCCChhhHHHHHhhhhccCC
Q 047492 759 -EIDHACELFNRMRR-KGYEPDQWTFDILKCGLYNCLR 794 (806)
Q Consensus 759 -~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~ 794 (806)
+....++.+..... +.-.++...-..+..++.+.|.
T Consensus 684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 22222332222222 2223444444556666666664
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.50 E-value=4.2 Score=44.59 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=28.5
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 457 LCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEM 508 (806)
Q Consensus 457 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 508 (806)
+...|+++.|.++.+.....-+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44455566666655555544333 4555666666666666666666555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.88 E-value=2.1 Score=43.29 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=58.7
Q ss_pred HHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH-----cCCCCChhhHHHHH
Q 047492 713 LGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR-----KGYEPDQWTFDILK 786 (806)
Q Consensus 713 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~ 786 (806)
...++..+...|+.++|+..++.+... -+.+...|..++.++.. |+..+|+..|+++.+ .|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455677777888888888888888876 46677788899999988 999999988888764 38999887766444
Q ss_pred hhh
Q 047492 787 CGL 789 (806)
Q Consensus 787 ~~~ 789 (806)
..+
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.56 E-value=23 Score=33.91 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCChhhHHHHH
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFD----LFMDMKEGQISPDGVTMNTVL 349 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~~~~~~~~~ll 349 (806)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +++...+.+++++......++
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga----------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA----------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344445677777777777665432 12344555444333 455555667777776666666
Q ss_pred HHHHHcCChH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 350 CFFCKAGMVD-VAIELYKSRS----EFG--LSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 350 ~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
..+.....-+ .-.++++.+. +.| -.-+......+...|.+.|++.+|...|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6655432211 1122333322 121 1235556666666677777776666655
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.47 E-value=2.3 Score=34.41 Aligned_cols=87 Identities=8% Similarity=-0.099 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhhhhccCcchhhHHHHHHhhhccc---cchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHH
Q 047492 691 DLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCI---KVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 691 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~ 766 (806)
++....+.+..-. +..++..+-..++.++.+.. +..+++.+++++.+.+..-....+--|.-++.+ |++++|.+.
T Consensus 22 eL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y 100 (134)
T 3o48_A 22 QLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 100 (134)
T ss_dssp HHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444443332 44445555555555555443 444677777777765411123344455556666 777777777
Q ss_pred HHHHHHcCCCCChh
Q 047492 767 FNRMRRKGYEPDQW 780 (806)
Q Consensus 767 ~~~m~~~g~~p~~~ 780 (806)
.+.+.+. +|+-.
T Consensus 101 ~d~lL~~--eP~N~ 112 (134)
T 3o48_A 101 VDTLFEH--ERNNK 112 (134)
T ss_dssp HHHHHTT--CTTCH
T ss_pred HHHHHhh--CCCCH
Confidence 7777653 55443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.19 E-value=5.7 Score=30.10 Aligned_cols=61 Identities=5% Similarity=-0.023 Sum_probs=34.4
Q ss_pred hHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHH
Q 047492 113 PLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLN 174 (806)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 174 (806)
-.+.+-+..+.....-|++.+..+.+.+|.|.+++..|+++|+..+..- .+....|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3455556666666666666666666666666666666666666665331 122334555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.66 E-value=4.9 Score=30.45 Aligned_cols=63 Identities=5% Similarity=-0.103 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 147 PDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 147 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
.-+..+-++.+-...+.|++....+.+++|.+.+++..|..+++.++..-.....+|..+++-
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 334555566666666666777777777777777777777777766665543334445555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.13 E-value=3.9 Score=41.27 Aligned_cols=69 Identities=17% Similarity=0.103 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHh
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE-----NGHKPTRAL 519 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 519 (806)
...++..+...|+.+++...+..+....+. +...|..+|.++.+.|+..+|++.|++..+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344667777888888888888887776655 777888888888888888888888887654 378887654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.56 E-value=42 Score=39.48 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNG----IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSIL 418 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 418 (806)
.-|..++..+-+.+.++.+.++-+...+..-..+. ..|..+.+++...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34677888888899999888887766553212221 2578889999999999999999988876543 34567777
Q ss_pred HHHHHhcCChhH
Q 047492 419 ADALCRDGKFEQ 430 (806)
Q Consensus 419 l~~~~~~g~~~~ 430 (806)
+..++..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 777777776544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.04 E-value=35 Score=32.98 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCChhhHHHHH
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEV----FDLFMDMKEGQISPDGVTMNTVL 349 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~m~~~g~~~~~~~~~~ll 349 (806)
|.++..-|.+.+++++|++++..-. ..+.+.|+...+ .-+++...+.++++|......++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA----------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS----------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344444667777777777655432 123444554433 33334555566666666666666
Q ss_pred HHHHHcCChH-HHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 350 CFFCKAGMVD-VAIELYKSRSE----FG--LSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 350 ~~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
..+.....-+ .-.++++++.+ .| -.-|......+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5554433211 11122222211 11 1234444555555666666666655554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.25 E-value=63 Score=34.68 Aligned_cols=98 Identities=11% Similarity=0.045 Sum_probs=71.5
Q ss_pred hhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 047492 81 KFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
++-.++.+.++.+.....-...+..+++.+++..+..++.. .+.+...-.....+....|+..+|......+-..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 56666777777777777777888889988887766664432 2456666667777888889988888888888766
Q ss_pred CCCCChhhHHHHHHHHHhcCCcch
Q 047492 161 GMDLDDYAYHVLLNALVEQGCFDA 184 (806)
Q Consensus 161 ~~~p~~~~~~~ll~~~~~~~~~~~ 184 (806)
| ...+..+..++..+.+.|....
T Consensus 132 ~-~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 132 G-KSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp S-SCCCTHHHHHHHHHHHTTCSCH
T ss_pred C-CCCcHHHHHHHHHHHHCCCCCH
Confidence 5 3356778888888888776644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 806 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.44 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.43 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.94 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.94 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.75 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.72 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.29 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.25 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.24 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.22 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.08 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.02 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.97 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.97 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.95 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.94 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.93 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.8 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.78 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.63 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.47 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.42 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.41 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.37 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.34 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.32 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.3 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.3 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.21 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.18 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.14 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.14 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.07 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.01 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.9 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.16 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.55 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.38 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.29 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.49 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.74 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.21 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.49 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.71 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.69 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.28 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 83.69 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.5e-18 Score=179.31 Aligned_cols=379 Identities=15% Similarity=0.052 Sum_probs=230.1
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 047492 177 VEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGK 256 (806)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (806)
.+.|++++|.+.++++.+..+.+..++..+..++.+.|++++|...+++.++.++ .+..+|..+...|.+.|++++|+.
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcccccccc
Confidence 3444444444444444444433444444444444444555555555544444332 233444455555555555555555
Q ss_pred HHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047492 257 LLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEG 336 (806)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 336 (806)
.+...... .+.+...+..........+....+......... ...................+....+...+......
T Consensus 89 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 89 HYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cccccccc--ccccccccccccccccccccccccccccccccc--cccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 55554443 111222222223333333333333333333222 11223333444445555666666666666665553
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 047492 337 QISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLS 416 (806)
Q Consensus 337 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 416 (806)
. +.+...+..+...+...|++++|...++...+.. +-+...|..+...+...|++++|...+++....+.. +...+.
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 241 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHH
Confidence 2 2245566666677777788888888887766543 234567777777888888888888888877765433 566677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 417 ILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
.+...+.+.|++++|...++++.+.. +-+..++..+...+...|++++|.+.++......+. +...+..+...+...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHHHCC
Confidence 77778888888888888888877765 445667778888888888888888888877766544 6777788888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHH
Q 047492 497 RADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYE 576 (806)
Q Consensus 497 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 576 (806)
++++|++.|++..+ +.|+ ++.++..+...|.+.|++++|.+.|+
T Consensus 320 ~~~~A~~~~~~al~--~~p~----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 320 NIEEAVRLYRKALE--VFPE----------------------------------FAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHTT--SCTT----------------------------------CHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCC----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888765 2333 34556677778888888888888888
Q ss_pred HHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCC
Q 047492 577 LMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMK 621 (806)
Q Consensus 577 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 621 (806)
+..+ +.|+... +|..+..+|.+.||
T Consensus 364 ~al~--l~P~~~~------------------a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 364 EAIR--ISPTFAD------------------AYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHT--TCTTCHH------------------HHHHHHHHHHHTCC
T ss_pred HHHH--hCCCCHH------------------HHHHHHHHHHHcCC
Confidence 8874 4566543 36777777766654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.2e-18 Score=180.23 Aligned_cols=365 Identities=13% Similarity=-0.008 Sum_probs=279.3
Q ss_pred HHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCH
Q 047492 138 VMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKI 216 (806)
Q Consensus 138 i~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 216 (806)
...+.+.|++++|++.|+++.+. .| ++.++..+..++.+.|++++|...++.+.+..+.+..++..+..++...|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 44566778888888888888766 34 4567777778888888888888888888888777777888888888888888
Q ss_pred HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHh
Q 047492 217 DEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKS 296 (806)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (806)
++|.+.+....+... .+...+..........+....+.......... ..................+....+...+..
T Consensus 84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccc--ccccccccccccccccccchhhhhHHHHHH
Confidence 888888888877654 33344444455555556666655555554443 233334455556666677777777777777
Q ss_pred hhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 047492 297 KNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPN 376 (806)
Q Consensus 297 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 376 (806)
..... +.+...+..+...+...|++++|...+++..+... -+...+..+...+...|++++|...++...+.+ ..+
T Consensus 161 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 161 AIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred hhccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 65421 22345666777888889999999999988877432 256677888888899999999999999887754 356
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047492 377 GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISA 456 (806)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 456 (806)
...+..+...+.+.|++++|.+.|++..+.... +..++..+...+...|++++|.+.++...... +.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 677888888899999999999999998876433 56788888899999999999999999887765 6677888889999
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047492 457 LCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPT 516 (806)
Q Consensus 457 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 516 (806)
+.+.|++++|.+.+++..+..+. +...|..+...|.+.|++++|...|++..+ +.|+
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~ 371 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 99999999999999998876655 777888899999999999999999999876 4554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=6.5e-12 Score=124.99 Aligned_cols=120 Identities=11% Similarity=-0.046 Sum_probs=64.4
Q ss_pred HhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHH
Q 047492 617 CKAMKANLAWGFMREMRHNG-MYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEA 695 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 695 (806)
...+.+.+|...|.+..+.. -.++...+..+...+...|++++|...+++.....
T Consensus 147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------------ 202 (323)
T d1fcha_ 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR------------------------ 202 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc------------------------
Confidence 34455566666666665522 12345555666666666777777777766665543
Q ss_pred HHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 047492 696 WIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR 772 (806)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~ 772 (806)
|.+..++..+...|...|++++|++.++++.+. .+.+..+|..+..+|.. |++++|+..|++..+
T Consensus 203 -----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 203 -----------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------cccccchhhhhhcccccccchhHHHHHHHHHHH-hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344444555555555555555555555543 12234445555555555 555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.3e-11 Score=119.71 Aligned_cols=118 Identities=14% Similarity=-0.023 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHH
Q 047492 285 GRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIEL 364 (806)
Q Consensus 285 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 364 (806)
+.+.+|.+.|.+.........+...+..+...+...|++++|...+++...... -+...+..+..+|...|++++|.+.
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHH
Confidence 344445554444433222222333444444555555555555555555444321 1344445555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 365 YKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
|++..+.. +-+..+|..+..+|.+.|++++|++.|++..
T Consensus 229 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 229 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55544421 1234445555555555555555555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.4e-07 Score=91.62 Aligned_cols=163 Identities=9% Similarity=0.018 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 344 TMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG-STHEAYEVLKNSIDHGLFPGKKTLSILADAL 422 (806)
Q Consensus 344 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 422 (806)
.|+.+-..+.+.+..++|+++++++++.. +-+...|+....++...| ++++|+..++...+.... +..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 34445555666777777777777777643 334556676666666655 477888888877766444 667777777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-----
Q 047492 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNR----- 497 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----- 497 (806)
.+.|++++|.+.++.+.+.. +-+...|..+...+.+.|++++|...++.+.+.++. +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 78888888888888887765 556777888888888888888888888888877666 67777776666665554
Q ss_pred -HHHHHHHHHHHHH
Q 047492 498 -ADIAARLLVEMEE 510 (806)
Q Consensus 498 -~~~a~~~~~~m~~ 510 (806)
+++|++.+.+.++
T Consensus 201 ~~~~ai~~~~~al~ 214 (315)
T d2h6fa1 201 VLEREVQYTLEMIK 214 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHH
Confidence 4566666666555
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=2.8e-07 Score=92.10 Aligned_cols=301 Identities=11% Similarity=-0.104 Sum_probs=201.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHhHHHHHHHH
Q 047492 453 FISALCKANKVEVGYLIHSELSRMNKVAS----ENTYIQLIHGFNKSNRADIAARLLVEMEENGH-KPTRALHRAVIRCL 527 (806)
Q Consensus 453 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~ 527 (806)
....+...|++++|.+++++..+..+..+ ...+..+...|...|++++|+..|++..+... .++..
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------- 88 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH--------- 88 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH---------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH---------
Confidence 34556778888888888888776544322 23566778888899999999999988765210 01110
Q ss_pred HccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC----CCccCcchhHHHHHHHHhhhCC
Q 047492 528 CNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS----GLVPQLGSNILMLQSYLKRKNG 603 (806)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~~~~~~~~~~~~ 603 (806)
.....+..+...+...|++..+...+...... +.......
T Consensus 89 ----------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~-------------- 132 (366)
T d1hz4a_ 89 ----------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH-------------- 132 (366)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH--------------
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH--------------
Confidence 01223445566777889999999888876531 11111110
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC----
Q 047492 604 IPRKLYNTLIVGLCKAMKANLAWGFMREMRHN----GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT---- 675 (806)
Q Consensus 604 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---- 675 (806)
...+..+...+...|+++.+...+...... +.......+......+...|++.++...+...........
T Consensus 133 --~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 210 (366)
T d1hz4a_ 133 --EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 210 (366)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred --HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCc
Confidence 012566778889999999999999988763 2222344556666777889999999888877654322111
Q ss_pred --chhHHHHHHHhhccccHHHHHHHHHhhhhccCc----chhhHHHHHHhhhccccchhhHHHHHHHHHc----CCCCC-
Q 047492 676 --SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQS----KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ----CFPLD- 744 (806)
Q Consensus 676 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~- 744 (806)
...+......+...|+.++|...+.......+. ....+..+...|...|++++|...++++... +..|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (366)
T d1hz4a_ 211 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 290 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHH
Confidence 223445556677889999999999988743332 2344566888999999999999999988753 22332
Q ss_pred hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc----CCCC----ChhhHHHHHhhhhccCCHHHHHH
Q 047492 745 TYTYNILLRRLSV-SEIDHACELFNRMRRK----GYEP----DQWTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 745 ~~~~~~li~~~~~-g~~~~A~~~~~~m~~~----g~~p----~~~~~~~l~~~~~~~g~~~eA~~ 800 (806)
...+..+...|.. |++++|.+.+++.... |... ....+..++..+...|+.+|+..
T Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 291 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 4567778888888 9999999999887543 3321 12345556777888888777754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=8.2e-07 Score=88.53 Aligned_cols=269 Identities=11% Similarity=-0.028 Sum_probs=153.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHH
Q 047492 316 RLLKENRLMEVFDLFMDMKEGQISPD----GVTMNTVLCFFCKAGMVDVAIELYKSRSEF----GLSP-NGIVYNYLINS 386 (806)
Q Consensus 316 ~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~ 386 (806)
.+...|++++|++++++..+.....+ ...+..+..+|...|++++|...|+...+. +..+ ....+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34455666666666665554321111 123444555566666666666666654431 1000 12234445556
Q ss_pred HHcCCChhHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHH
Q 047492 387 LCGDGSTHEAYEVLKNSID----HGLFPG---KKTLSILADALCRDGKFEQMKDLVIFALERNI----KLRDVTYDKFIS 455 (806)
Q Consensus 387 ~~~~g~~~~a~~~~~~m~~----~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~ 455 (806)
+...|++..+...+.+... .+.... ...+..+...+...|+++.+...+........ ......+..+..
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 6666777776666665442 111111 12344455566677777777777766655321 122334455556
Q ss_pred HHHhcCChhHHHHHHHHHhhcCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 047492 456 ALCKANKVEVGYLIHSELSRMNK----VA--SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCN 529 (806)
Q Consensus 456 ~~~~~~~~~~a~~~~~~~~~~~~----~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 529 (806)
.+...++...+...+........ .+ ....+..+...+...|++++|...+.+..+.....+
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------- 247 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN------------- 247 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC-------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc-------------
Confidence 66677777777766655443211 11 123455666677788888888888777654211111
Q ss_pred cCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHH----CCCccCcchhHHHHHHHHhhhCCCC
Q 047492 530 METPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQR----SGLVPQLGSNILMLQSYLKRKNGIP 605 (806)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~~~~~~~~~~~~~~ 605 (806)
......+..+...+...|++++|...+++... .+..|+...
T Consensus 248 -------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---------------- 292 (366)
T d1hz4a_ 248 -------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR---------------- 292 (366)
T ss_dssp -------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH----------------
T ss_pred -------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH----------------
Confidence 11223355567788888999999999888763 344444322
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 606 RKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 606 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
++..+...|...|++++|.+.+++..+
T Consensus 293 --~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 293 --NLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 477888899999999999999988765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=9.7e-08 Score=92.93 Aligned_cols=189 Identities=11% Similarity=-0.000 Sum_probs=147.6
Q ss_pred CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047492 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYE 645 (806)
Q Consensus 566 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 645 (806)
+..++|..+|++..+.. .|.... .|...+..+...|++++|..+|+++++.........|.
T Consensus 78 ~~~~~a~~i~~ral~~~-~p~~~~------------------l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~ 138 (308)
T d2onda1 78 LFSDEAANIYERAISTL-LKKNML------------------LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI 138 (308)
T ss_dssp HHHHHHHHHHHHHHTTT-TTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHH
T ss_pred cchHHHHHHHHHHHHHc-CCCCHH------------------HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHH
Confidence 34578888998887542 344322 37777888889999999999999999754333455788
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhcccc
Q 047492 646 ELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIK 725 (806)
Q Consensus 646 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 725 (806)
.++..+.+.|+++.|.++++.+.+.+..............+...|+.+.|..+++.+....|.+...|...+..+...|+
T Consensus 139 ~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~ 218 (308)
T d2onda1 139 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 218 (308)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998876543322222222234456899999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHcC-CCCC--hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 726 VSQDIEGLQKMIEQC-FPLD--TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 726 ~~~A~~~~~~~~~~~-~~~~--~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.++|..+|++..+.. .+|+ ...|...+.--.. |+.+.+.++++++.+.
T Consensus 219 ~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 219 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999998863 2333 3468888876667 9999999999998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=2.5e-07 Score=89.92 Aligned_cols=188 Identities=6% Similarity=-0.064 Sum_probs=147.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 321 NRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 321 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
+..++|..+|+...+...+.+...+...+..+.+.|+++.|..+|+.+.+........+|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888999888765545666778888888899999999999999887543333557888899999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCC-
Q 047492 401 KNSIDHGLFPGKKTLSILAD-ALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNK- 478 (806)
Q Consensus 401 ~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 478 (806)
+++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+...+...++.+.+.|+.+.|..+|+.......
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999877544 3344433333 2345688999999999998874 56778899999999999999999999999877653
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 479 VA--SENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 479 ~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.| ....|...+.--...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 345788888888889999999999998876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.5e-07 Score=88.80 Aligned_cols=196 Identities=9% Similarity=-0.051 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcC-ChhhHHHHHHHHhhcCCCC-ChhhHHHHH
Q 047492 96 RATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAG-KPDIALHLFGKMRFQGMDL-DDYAYHVLL 173 (806)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 173 (806)
...|..+..++.+.+.++.|..+++..... .|-+..+|+....++...| ++++|+..++...+. .| +..+|+.+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l-nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL-NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHh
Confidence 345555556666777777777777777664 3446666676666666655 467777777777665 33 455777777
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC---
Q 047492 174 NALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSR--- 250 (806)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 250 (806)
..+.+.|++++|++.++.+.+..+.+..+|..+...+...|++++|.+.+++.++.++ .+...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccch
Confidence 7777777777777777777777777777777777777777777777777777777654 345566665555555444
Q ss_pred ---HHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 251 ---FEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 251 ---~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
+++|++.+...... .+.+...|..+...+ .....+++.+.++...
T Consensus 199 ~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGIL-QDRGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHH-TTTCGGGCHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHH-HhcChHHHHHHHHHHH
Confidence 45666666655543 122344444443333 2233445555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=1.1e-07 Score=90.03 Aligned_cols=196 Identities=8% Similarity=-0.093 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhh
Q 047492 484 TYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAG 563 (806)
Q Consensus 484 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
.|..+...|.+.|++++|+..|++.++ +.|+ ++.+|+.+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~--l~p~----------------------------------~~~a~~~lg~~~~ 82 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALA--IRPD----------------------------------MPEVFNYLGIYLT 82 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCC----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhc--cCCC----------------------------------CHHHHhhhchHHH
Confidence 445555666666666666666666654 2232 4445556666666
Q ss_pred cCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047492 564 HVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMEC 643 (806)
Q Consensus 564 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 643 (806)
+.|++++|+..|++..+. .|+... +|..+..+|...|++++|...|+...+.. +.+...
T Consensus 83 ~~g~~~~A~~~~~~al~~--~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 141 (259)
T d1xnfa_ 83 QAGNFDAAYEAFDSVLEL--DPTYNY------------------AHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFR 141 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCTH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHhhhhhhHHHHH--Hhhhhh------------------hHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHH
Confidence 666666666666666642 343322 35556666666666666666666666532 112222
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhc----cccHHHHHHHHHhhhhccCcchhhHHHHHHh
Q 047492 644 YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALK----TRDLYEAWIRLRGMLINEQSKISLLGQLIGV 719 (806)
Q Consensus 644 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 719 (806)
...+..++.+.+..+.+..+..........+ ...+. +..+.. .+....+...+.......+....++..+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 218 (259)
T d1xnfa_ 142 SLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 218 (259)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHH
Confidence 2222233334444444444444433322211 11111 111111 1122222222222222222333445556666
Q ss_pred hhccccchhhHHHHHHHHHc
Q 047492 720 FSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 720 ~~~~g~~~~A~~~~~~~~~~ 739 (806)
|...|++++|+..|+++...
T Consensus 219 ~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 219 YLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHc
Confidence 66666666666666666653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.75 E-value=2e-07 Score=91.96 Aligned_cols=234 Identities=11% Similarity=-0.048 Sum_probs=153.2
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNR--ADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQ 536 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 536 (806)
..|.+++|..+++...+.++. +...|..+..++...++ +++|+..+.++.+. .|
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~~--------------------- 140 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DE--------------------- 140 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CT---------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh--Cc---------------------
Confidence 344566777777777776655 66677777666666553 67788777777662 22
Q ss_pred HHHHHHhHhhCCCCChhhHH-HHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHH
Q 047492 537 FLQLLNMQLSHQETNFQIYN-FFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVG 615 (806)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 615 (806)
.+...+. .....+...+.+++|+..++...+. .|+... +|+.+...
T Consensus 141 -------------~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~------------------a~~~l~~~ 187 (334)
T d1dcea1 141 -------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYS------------------SWHYRSCL 187 (334)
T ss_dssp -------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHH------------------HHHHHHHH
T ss_pred -------------hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHH------------------HHHHHHHH
Confidence 1222222 2334555677888888888877743 455443 47778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHH
Q 047492 616 LCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEA 695 (806)
Q Consensus 616 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 695 (806)
+.+.|++++|...++...+ +.|+. ..+...+...+..+++...+......... ....+..+...+...++..+|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHH
Confidence 8888888877655544333 11111 12333455567777888887777766532 333444555566677888888
Q ss_pred HHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-hhhHHHHHHHHhh
Q 047492 696 WIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNILLRRLSV 757 (806)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 757 (806)
...+.+.....|.+..++..++..|...|+.++|++.++++.+. .|+ ..-|+.|...+..
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHhH
Confidence 88888888888888888888888898999999999999998885 454 3455555555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=2.3e-08 Score=99.08 Aligned_cols=253 Identities=7% Similarity=-0.151 Sum_probs=156.5
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCChh-hHHHHHHHH----------HhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 141 YALAGKPDIALHLFGKMRFQGMDLDDY-AYHVLLNAL----------VEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 141 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
..+.+..++|++++++..+. .|+.. .|+..-..+ ...|++++|+.+++...+..+.+...+..+..+
T Consensus 39 ~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~ 116 (334)
T d1dcea1 39 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (334)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHH
Confidence 33334457888888888765 45443 443332222 223446778888888888777777777766666
Q ss_pred hhccC--CHHHHHHHHHHhHhCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCC
Q 047492 210 LCKQK--KIDEAVEYFQQLVSGRECVSGFMI-GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGR 286 (806)
Q Consensus 210 ~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (806)
+...+ ++++|...++...+... .+...+ ......+...|.++.|+..++..... .+-+...|..+...+.+.|+
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSC
T ss_pred HHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcC
Confidence 65554 47788888888877654 334444 34446666778888888888877764 23455677777777778887
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 047492 287 LDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYK 366 (806)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 366 (806)
+++|...+...... .|+ .......+...+..+++...+....... +++...+..+...+...|+.++|...+.
T Consensus 194 ~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 194 QPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77665544433321 111 1122333445555666666666665543 2344555556666667777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 047492 367 SRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDH 406 (806)
Q Consensus 367 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 406 (806)
+..+.. +.+..++..+...+...|+.++|.+.+++..+.
T Consensus 267 ~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 267 ELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 766532 123456666677777777777887777777764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=2.1e-07 Score=88.10 Aligned_cols=131 Identities=13% Similarity=-0.033 Sum_probs=93.4
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLK 208 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 208 (806)
...+|..+...|.+.|++++|+..|++..+. .| ++.+|+.+..++.+.|++++|+..|+++.+..+.+..++..+..
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHH
Confidence 3456667777888888888888888888766 33 56678888888888888888888888888887777778888888
Q ss_pred HhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047492 209 CLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (806)
++...|++++|.+.|+...+..+ .+......+...+.+.+..+.+..+......
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 88888888888888888776553 2333333344444555555555555544443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1.2e-05 Score=70.95 Aligned_cols=127 Identities=10% Similarity=-0.062 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhc
Q 047492 133 FNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCK 212 (806)
Q Consensus 133 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 212 (806)
.|+. ...+...|+++.|++.|+++. .|++.+|..+..++...|++++|++.|++..+.++.....|..+..++.+
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 3443 445667888888888887653 45677788888888888888888888888888887777888888888888
Q ss_pred cCCHHHHHHHHHHhHhCCCC--------------C-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047492 213 QKKIDEAVEYFQQLVSGREC--------------V-SGFMIGIVVDALCKNSRFEQAGKLLEDFKDR 264 (806)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 264 (806)
.|++++|.+.|++.+..... . ...++..+..++.+.|++++|.+.|+.....
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888888877643110 0 1244556777888889999999888887654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=2e-05 Score=75.18 Aligned_cols=165 Identities=10% Similarity=-0.062 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC------Cccc
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQ----GMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFE------NDVT 202 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~ 202 (806)
|......|...+++++|+..|++..+. +-.+ ...+|+.+..+|.+.|++++|.+.++........ ...+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444455666677777777777666432 1111 1235666666676777777777776665443211 1123
Q ss_pred hHHHHHHhh-ccCCHHHHHHHHHHhHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCc----ch-
Q 047492 203 RTIMLKCLC-KQKKIDEAVEYFQQLVSG----RECV-SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVK----LE- 271 (806)
Q Consensus 203 ~~~li~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~- 271 (806)
+..+...|. ..|++++|.+.+++..+. +..+ -..++..+...+...|++++|.+.|++........+ ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 444444443 346666666666654421 1111 123455566666666666666666666544311111 00
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 272 KAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
..+...+..+...|+++.|.+.+++..
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 112233334445556666666655554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=6.6e-06 Score=78.66 Aligned_cols=197 Identities=10% Similarity=-0.126 Sum_probs=134.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-----chh
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHN----GMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT-----SFI 678 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~ 678 (806)
|......|...|++++|...|.+..+. +-.+ -..+|..+..+|.+.|++++|.+.++...+.....+ ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 555667788899999999999988762 2122 235788899999999999999999987765322221 234
Q ss_pred HHHHHHHhh-ccccHHHHHHHHHhhhhcc-----Cc-chhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCCh------
Q 047492 679 GNTLLLHAL-KTRDLYEAWIRLRGMLINE-----QS-KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDT------ 745 (806)
Q Consensus 679 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------ 745 (806)
+..+...+. ..|++++|...+.++..-. ++ ...++..++..|...|++++|+..++++.+.......
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 445555554 4699999999999886321 11 2345788899999999999999999999885322111
Q ss_pred hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC-CC---hhhHHHHHhhhhc--cCCHHHHHHHHHhh
Q 047492 746 YTYNILLRRLSV-SEIDHACELFNRMRRKGYE-PD---QWTFDILKCGLYN--CLRTDEAERRLEEM 805 (806)
Q Consensus 746 ~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~-p~---~~~~~~l~~~~~~--~g~~~eA~~~l~~m 805 (806)
..|..++..+.. |+++.|...+++....... ++ ......++.++-. .+.+++|+..++++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 123344445556 9999999999988755221 11 2234556666544 45688998877654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.2e-05 Score=70.90 Aligned_cols=86 Identities=10% Similarity=-0.087 Sum_probs=47.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccH
Q 047492 613 IVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDL 692 (806)
Q Consensus 613 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 692 (806)
...+...|++++|++.|.++ .+|+..+|..+..++...|++++|.+.|++.++.+.. .+..+..+...+.+.|+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 44455666677776666543 2445556666666666666666666666666655422 233444444444455555
Q ss_pred HHHHHHHHhhh
Q 047492 693 YEAWIRLRGML 703 (806)
Q Consensus 693 ~~a~~~~~~~~ 703 (806)
++|...++++.
T Consensus 87 ~~A~~~~~kAl 97 (192)
T d1hh8a_ 87 DLAIKDLKEAL 97 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3e-05 Score=61.73 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=70.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 047492 419 ADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRA 498 (806)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 498 (806)
...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|...++...+.++. +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 445666777777777777777765 556667777777777788888888877777776655 777777777788888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHh
Q 047492 499 DIAARLLVEMEENGHKPTRAL 519 (806)
Q Consensus 499 ~~a~~~~~~m~~~~~~p~~~~ 519 (806)
++|+..|++..+ +.|+...
T Consensus 88 ~~A~~~~~~a~~--~~p~~~~ 106 (117)
T d1elwa_ 88 EEAKRTYEEGLK--HEANNPQ 106 (117)
T ss_dssp HHHHHHHHHHHT--TCTTCHH
T ss_pred HHHHHHHHHHHH--hCCCCHH
Confidence 888888887776 4555433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.2e-05 Score=66.93 Aligned_cols=88 Identities=7% Similarity=-0.149 Sum_probs=47.5
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 047492 175 ALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQA 254 (806)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (806)
.+.+.|++++|+..|++..+..+.+...|..+..+|...|++++|.+.|+..++.++ .+..+|..+..++...|++++|
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555555554555555555555555555555555555554432 3344555555555555555555
Q ss_pred HHHHHHhhh
Q 047492 255 GKLLEDFKD 263 (806)
Q Consensus 255 ~~~~~~~~~ 263 (806)
...+++...
T Consensus 98 ~~~~~~a~~ 106 (159)
T d1a17a_ 98 LRDYETVVK 106 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=0.0001 Score=58.48 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=60.1
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 384 INSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKV 463 (806)
Q Consensus 384 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 463 (806)
...+.+.|++++|+..|++.++.... +...|..+..++...|++++|...+....+.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 34455666666666666666655432 55566666666666677777777776666655 45566666666677777777
Q ss_pred hHHHHHHHHHhhcCCC
Q 047492 464 EVGYLIHSELSRMNKV 479 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~ 479 (806)
++|...++...+..+.
T Consensus 88 ~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7777777766655443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=5e-05 Score=64.58 Aligned_cols=115 Identities=10% Similarity=-0.049 Sum_probs=60.7
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhh
Q 047492 650 LLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQD 729 (806)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 729 (806)
.|.+.|++++|...|++..+.+. .+...+..+...+...|++.+|...++.+....|.+...+..++.+|...|++++|
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555554432 23334444444455555555555555555555556666666677777777777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHh--h-hcHHHHHHH
Q 047492 730 IEGLQKMIEQCFPLDTYTYNILLRRLS--V-SEIDHACEL 766 (806)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~li~~~~--~-g~~~~A~~~ 766 (806)
+..++++.+.. +-+...+..+..+.. . +.+++|+..
T Consensus 98 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 98 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77777777752 223333333333322 2 445555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=0.0078 Score=56.85 Aligned_cols=275 Identities=11% Similarity=0.041 Sum_probs=123.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHH
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLL 318 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 318 (806)
..+.+-|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+...+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACV 80 (336)
T ss_dssp -----------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHHHHHHH
Confidence 3444555556666666666654432 5555555556666666655554431 3345555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 319 KENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYE 398 (806)
Q Consensus 319 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 398 (806)
+......+ .+...+...+......++..|-..|.+++...++....... ..+...++.++..|++.+ .++-.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHH
Confidence 55444332 11122223344444556666666666666666666544321 344455556666665543 222222
Q ss_pred HHHHHHhCCCCCCHH----------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047492 399 VLKNSIDHGLFPGKK----------TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYL 468 (806)
Q Consensus 399 ~~~~m~~~~~~p~~~----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 468 (806)
.++.. +-..|.. .|.-++..|.+.|+++.|..+. .++ .++..-....+..+.+..+.+...+
T Consensus 154 ~l~~~---s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~ 225 (336)
T d1b89a_ 154 HLELF---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYR 225 (336)
T ss_dssp HHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred HHHhc---cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHH
Confidence 22221 1111111 0122223333334444333332 111 2233333445555666666666666
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCC
Q 047492 469 IHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQ 548 (806)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 548 (806)
+.....+. ++...+.++......-+..+..+.++ +.+.-|-.. .+++.....
T Consensus 226 ~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~---k~~~l~li~--------------------p~Le~v~~~- 277 (336)
T d1b89a_ 226 AIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFS---KVKQLPLVK--------------------PYLRSVQNH- 277 (336)
T ss_dssp HHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHH---HTTCTTTTH--------------------HHHHHHHTT-
T ss_pred HHHHHHHc----CHHHHHHHHHHhccCCCHHHHHHHHH---hcCCcHHHH--------------------HHHHHHHHc-
Confidence 55554443 22344556666555556655555443 222222211 122221111
Q ss_pred CCChhhHHHHHHhhhcCCChHHHHHH
Q 047492 549 ETNFQIYNFFIDGAGHVKRPDLARAV 574 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~~~a~~~ 574 (806)
.+..+.+++...|...++++.-.+.
T Consensus 278 -n~~~vn~al~~lyie~~d~~~l~~~ 302 (336)
T d1b89a_ 278 -NNKSVNESLNNLFITEEDYQALRTS 302 (336)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -ChHHHHHHHHHHHhCcchhHHHHHH
Confidence 1345788888888888886554433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.97 E-value=2.3e-05 Score=61.81 Aligned_cols=85 Identities=16% Similarity=0.010 Sum_probs=45.8
Q ss_pred HhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA 763 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A 763 (806)
.+.+.|++.+|...++++....|.+...|..+..+|.+.|++++|+..++++.+. .|.+...|..+...|.. |++++|
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc-ccccccchHHHHHHHHHCCCHHHH
Confidence 3444455555555555554444555555555555555556666666666655554 23345555555555555 666666
Q ss_pred HHHHHHH
Q 047492 764 CELFNRM 770 (806)
Q Consensus 764 ~~~~~~m 770 (806)
++.+++.
T Consensus 104 ~~~l~~~ 110 (112)
T d1hxia_ 104 LASLRAW 110 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.95 E-value=1.6e-05 Score=71.05 Aligned_cols=104 Identities=9% Similarity=-0.137 Sum_probs=75.3
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHH
Q 047492 604 IPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLL 683 (806)
Q Consensus 604 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 683 (806)
|+...+......|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..++...+..+ -....+..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence 455556677788888888888888888887742 23567788888888888888888888888876542 2344566677
Q ss_pred HHhhccccHHHHHHHHHhhhhccCcc
Q 047492 684 LHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 684 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
..+...|++++|...++.+....|.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 77777788888887777776544433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=0.009 Score=56.40 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=72.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 340 PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILA 419 (806)
Q Consensus 340 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 419 (806)
||..-...+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 4444455556666677777777777765443 555666667777777777766543 1555676677
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 420 DALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
.++.+......+. +.......+......++..|-..|.++....+++...... ..+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 7766655443321 1122334455555667777777777777777777665432 235666677777776653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.93 E-value=6.8e-05 Score=66.80 Aligned_cols=99 Identities=17% Similarity=0.052 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 047492 410 PGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLI 489 (806)
Q Consensus 410 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 489 (806)
|+...+......+.+.|++++|...|.++++.. +.+...|..+..+|.+.|++++|...|+...+.++. +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 555666666777777888888888887777765 556777777888888888888888888888766554 677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 047492 490 HGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.+|...|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=3.8e-05 Score=61.32 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=67.5
Q ss_pred HHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhcc---ccchhhHHHHHHHHHcCCCCC-hhhHHHHHHHH
Q 047492 680 NTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGC---IKVSQDIEGLQKMIEQCFPLD-TYTYNILLRRL 755 (806)
Q Consensus 680 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~ 755 (806)
..++..+...+++.+|.+.|+.+....|.+..++..++.++.+. ++.++|+.+++++.+....|+ ..+|..|..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34555666677777777777777777777777777777777653 444568888888776533333 23566777777
Q ss_pred hh-hcHHHHHHHHHHHHHcCCCCChh
Q 047492 756 SV-SEIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 756 ~~-g~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
.. |++++|++.|+++.+. .|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 77 8888888888888764 45544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.80 E-value=4e-05 Score=60.40 Aligned_cols=84 Identities=7% Similarity=-0.049 Sum_probs=35.1
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAG 255 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (806)
+.+.|++++|+..|++.....+.+..+|..+..++.+.|++++|...|++.++..+ .+..+|..+...|...|++++|+
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~~~A~ 104 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAAL 104 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCCHHHHH
Confidence 33344444444444444444333334444444444444444444444444443332 22334444444444444444444
Q ss_pred HHHHH
Q 047492 256 KLLED 260 (806)
Q Consensus 256 ~~~~~ 260 (806)
+.|++
T Consensus 105 ~~l~~ 109 (112)
T d1hxia_ 105 ASLRA 109 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=7e-05 Score=59.69 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCC---HHHHHHHHHHhHhCCCCCC-HHhHHHHHHHH
Q 047492 170 HVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKK---IDEAVEYFQQLVSGRECVS-GFMIGIVVDAL 245 (806)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 245 (806)
..++..+...+++++|++.|+.....++.+..++..+..++.+.++ +++|.+++++....+..|+ ..++..+..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4566677777788888888888888877777787778877776444 4468888888777665443 23667777888
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 047492 246 CKNSRFEQAGKLLEDFKDR 264 (806)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~ 264 (806)
.+.|++++|++.|++..+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 8888888888888887764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00054 Score=58.52 Aligned_cols=61 Identities=13% Similarity=0.005 Sum_probs=42.6
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
++.+...|.+.|++++|+..++.+....|.+...+..++.+|...|++++|+..|+++.+.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4445555666677777777777776666667777777777777777777777777777774
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.002 Score=54.81 Aligned_cols=75 Identities=15% Similarity=0.007 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIH 490 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 490 (806)
+|+.+..+|.+.|++++|...++..++.+ +.+...+..+..+|...|++++|...|+...+.++. |......+-.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~ 138 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34445555666666666666666666554 345556666666666666666666666666555443 4444443333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00025 Score=57.23 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=39.8
Q ss_pred HHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 680 NTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 680 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
..+...+...|++++|...|.++....|.+..++..+..+|...|++++|+..++++.+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence 344555666677777777777766666666666666666676677777777776666653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.41 E-value=0.00096 Score=57.16 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=60.7
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH-----cCCCCChhhHH
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR-----KGYEPDQWTFD 783 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 783 (806)
...+..++..+...|++++|+..++++.+. -+-+...|..++.+|.. |+.++|+..|+++.+ .|+.|...+-.
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 345667888888899999999999999887 46678889999999999 999999999998754 59999877654
Q ss_pred H
Q 047492 784 I 784 (806)
Q Consensus 784 ~ 784 (806)
.
T Consensus 146 l 146 (179)
T d2ff4a2 146 L 146 (179)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.41 E-value=0.0016 Score=55.42 Aligned_cols=58 Identities=16% Similarity=-0.034 Sum_probs=34.2
Q ss_pred HHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 682 LLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 682 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
+..++.+.|++.+|+..++.+....|.+...+..+..+|...|++++|+..|+++.+.
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555566666666666666666666666666653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.37 E-value=0.051 Score=49.73 Aligned_cols=113 Identities=9% Similarity=-0.047 Sum_probs=63.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 047492 392 STHEAYEVLKNSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKV 463 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~ 463 (806)
....+...+...... .+...+..+...+.. ..+...+..+++...+.| +......+...|.. ..+.
T Consensus 125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 344555555554443 244455555555543 234555556666555544 33334444444443 4567
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 047492 464 EVGYLIHSELSRMNKVASENTYIQLIHGFNK----SNRADIAARLLVEMEENGH 513 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~ 513 (806)
++|..+|+...+.+ ++..+..|...|.. ..+.++|.+.|++..+.|.
T Consensus 199 ~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 77777777776665 45566666666654 3367777777777776653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.34 E-value=0.056 Score=49.42 Aligned_cols=186 Identities=9% Similarity=0.018 Sum_probs=103.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 312 FLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSL 387 (806)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 387 (806)
.+-..+.+.+++++|++.|++..+.| |...+..|-..|.. ..+...|...+....+.+ +......+...+
T Consensus 7 ~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~ 80 (265)
T d1ouva_ 7 GLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 80 (265)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccccc
Confidence 33444455666666666666665554 33444444444444 345666766666666543 223333333333
Q ss_pred H----cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047492 388 C----GDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK 459 (806)
Q Consensus 388 ~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 459 (806)
. ...+.+.|...++...+.|.. .....+...+.. ......+...+...... .+...+..|...|..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 81 YSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDA 154 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhcc
Confidence 2 245667777777777766532 222223222222 23455666666665553 345566667666665
Q ss_pred ----cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047492 460 ----ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK----SNRADIAARLLVEMEENG 512 (806)
Q Consensus 460 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 512 (806)
..+...+..+++...+.+ +......+...|.. ..++++|+..|.+..+.|
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 345556666666666554 55565556555554 457888888888877754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.0004 Score=55.98 Aligned_cols=94 Identities=10% Similarity=-0.042 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHH-------H
Q 047492 644 YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQ-------L 716 (806)
Q Consensus 644 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------l 716 (806)
+..+...+.+.|++++|+..|++.++.++ .+...+..+...+.+.|++++|...++.+..-.|.+...+.. +
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 45567788888999999999988888754 356677778888888899999998888887655554443333 3
Q ss_pred HHhhhccccchhhHHHHHHHHH
Q 047492 717 IGVFSGCIKVSQDIEGLQKMIE 738 (806)
Q Consensus 717 ~~~~~~~g~~~~A~~~~~~~~~ 738 (806)
...+...+++++|++.|++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 3333444444445554444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.30 E-value=0.0041 Score=51.64 Aligned_cols=118 Identities=11% Similarity=-0.063 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
.+..-...+.+.|++.+|+..|.+..+.-.... ...+........ .....+|+.+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~--------------~~~~~~~~~~~~------~~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE--------------EWDDQILLDKKK------NIEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT--------------TCCCHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh--------------hhhhHHHHHhhh------hHHHHHHhhHHHHHH
Confidence 444555677788888888888887765311000 000000000000 011246677888899
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRAL 519 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 519 (806)
+.|++++|++.++.....++. +...|..+..++...|++++|+..|++..+ +.|+...
T Consensus 79 ~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~ 136 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLD 136 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHH
T ss_pred Hhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH
Confidence 999999999999998888765 888999999999999999999999999887 5565443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.30 E-value=0.0015 Score=54.44 Aligned_cols=61 Identities=10% Similarity=-0.052 Sum_probs=40.0
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
++..+..+|.+.|++++|++.++++++. .|.+..+|..+..++.. |++++|+..|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~-~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccc-cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666666667777777777776665 24456666666666666 7777777777666654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.21 E-value=0.0013 Score=56.12 Aligned_cols=82 Identities=11% Similarity=-0.059 Sum_probs=51.5
Q ss_pred cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047492 708 SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILK 786 (806)
Q Consensus 708 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 786 (806)
.....+..+..+|.+.|++++|+..++++++. -+.+...|..+..++.. |++++|+..|++..+... .+..+...+.
T Consensus 75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~ 152 (169)
T d1ihga1 75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 34455666677777777777777777777765 24456667777777777 777777777777776422 1334444444
Q ss_pred hhhhc
Q 047492 787 CGLYN 791 (806)
Q Consensus 787 ~~~~~ 791 (806)
.+..+
T Consensus 153 ~~~~~ 157 (169)
T d1ihga1 153 KVKQK 157 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.19 E-value=0.00014 Score=67.03 Aligned_cols=51 Identities=18% Similarity=0.078 Sum_probs=25.1
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIE 738 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 738 (806)
+.|++++|...+++.+...|.+...+..++..|+..|++++|+..+++..+
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444444444444444555555555555555555555555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.18 E-value=0.00041 Score=57.28 Aligned_cols=125 Identities=10% Similarity=0.091 Sum_probs=78.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHH
Q 047492 617 CKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEA 695 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 695 (806)
-+.+.+++|...|+...+ +.| +...+..+..+|...+++..+.+- .+.+++|
T Consensus 8 ~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~-------------------------~~~~~~A 60 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDA-------------------------KQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHH-------------------------HHHHHHH
T ss_pred HHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHH-------------------------HHHHHHH
Confidence 344557788888888777 344 555666666666655444433331 2334566
Q ss_pred HHHHHhhhhccCcchhhHHHHHHhhhccc-----------cchhhHHHHHHHHHcCCCCChhhHHHHHHHHhhhcHHHHH
Q 047492 696 WIRLRGMLINEQSKISLLGQLIGVFSGCI-----------KVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHAC 764 (806)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~g~~~~A~ 764 (806)
...++++....|.+..++..+..+|...| .+++|.+.|+++.+. .|+...|...+ +...+|.
T Consensus 61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L-----~~~~ka~ 133 (145)
T d1zu2a1 61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL-----EMTAKAP 133 (145)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH-----HHHHTHH
T ss_pred HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHH-----HHHHHHH
Confidence 67777777777777777777777776554 357788888888884 56666554333 4455666
Q ss_pred HHHHHHHHcCC
Q 047492 765 ELFNRMRRKGY 775 (806)
Q Consensus 765 ~~~~~m~~~g~ 775 (806)
+++.+..+.|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 66666666553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.00021 Score=73.59 Aligned_cols=135 Identities=13% Similarity=-0.063 Sum_probs=69.0
Q ss_pred CCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHH
Q 047492 654 TKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGL 733 (806)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 733 (806)
.+.++.|+..+....+.. ..+...+..+...+.+.|+..+|...+.......+ ..++..+...+...|++++|+..+
T Consensus 99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHH
Confidence 344444444443333221 12333445555566677777777766665543222 245666778888888888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccC
Q 047492 734 QKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCL 793 (806)
Q Consensus 734 ~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 793 (806)
+++.+. .|.+...|+.|...+.. |+..+|+..|.+..... .|-..++..|...|.+..
T Consensus 176 ~~A~~l-~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 176 RHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHH-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 888886 35556788888888887 88888888888777543 345566677777665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.14 E-value=0.0015 Score=55.48 Aligned_cols=142 Identities=10% Similarity=-0.000 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
...+......+.+.|++++|...|++....-...... ....... ..+-...+++.+..+|
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~-----------~~~~~~~---------~~~~~~~~~~Nla~~~ 74 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL-----------SEKESKA---------SESFLLAAFLNLAMCY 74 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-----------CHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc-----------chhhhhh---------cchhHHHHHHhHHHHH
Confidence 3456667778888999999999888765421100000 0000000 0011234566788899
Q ss_pred hccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCC-ChhhHHHHHhhhhccCCH-HH
Q 047492 721 SGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEP-DQWTFDILKCGLYNCLRT-DE 797 (806)
Q Consensus 721 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~-~e 797 (806)
.+.|++++|+..++++.+. .|.+..+|..+..++.. |++++|...|++.... .| +..+...+..+..+.+.. +.
T Consensus 75 ~~l~~~~~Ai~~~~~al~l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~~~~e~ 151 (168)
T d1kt1a1 75 LKLREYTKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQKKAKEHNER 151 (168)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccchhhhhhhhhc-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999997 46788899999999999 9999999999999875 44 444555554444444433 34
Q ss_pred HHHHHHhh
Q 047492 798 AERRLEEM 805 (806)
Q Consensus 798 A~~~l~~m 805 (806)
..+.+.+|
T Consensus 152 ~kk~~~~~ 159 (168)
T d1kt1a1 152 DRRTYANM 159 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.11 E-value=0.0044 Score=52.85 Aligned_cols=129 Identities=15% Similarity=0.050 Sum_probs=88.2
Q ss_pred CHHHHHHHH---HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047492 376 NGIVYNYLI---NSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDK 452 (806)
Q Consensus 376 ~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 452 (806)
|...|..+. ......|++++|.+.|.+.....-.+ . +.......-+...-..+.. .....+..
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~--~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~ 72 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGP--V--------LDDLRDFQFVEPFATALVE----DKVLAHTA 72 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--T--------TGGGTTSTTHHHHHHHHHH----HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc--c--------cccCcchHHHHHHHHHHHH----HHHHHHHH
Confidence 444444443 46778899999999998887632110 0 0000111111111111111 11245677
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHh
Q 047492 453 FISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE-----NGHKPTRAL 519 (806)
Q Consensus 453 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 519 (806)
+...+.+.|++++|...++.+...++. +...|..++.+|.+.|+..+|++.|+++.. .|+.|...+
T Consensus 73 la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 889999999999999999999998877 899999999999999999999999999754 588887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.07 E-value=0.0017 Score=55.26 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=30.4
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047492 202 TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 202 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (806)
.+..+..++.+.|++++|...++..++..+ .+..+|..+..+|.+.|++++|++.|+...+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444455555555555555555554432 3344455555555555555555555555444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00048 Score=70.91 Aligned_cols=133 Identities=15% Similarity=-0.008 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHH
Q 047492 285 GRLDLALEFLKSKNSLEGYVP-EVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIE 363 (806)
Q Consensus 285 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 363 (806)
+.++.|+..+.... ++.| +...+..+...+.+.|+.++|...+....... ....+..+...+...|++++|..
T Consensus 100 ~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 100 GFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHTC----------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHH
Confidence 44455554444332 2222 34445555666667777777766665544311 12455666677777788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047492 364 LYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD 425 (806)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 425 (806)
.|++..+.. +-+...|+.|...+...|+..+|...|.+..... .|-..++..|...+.+.
T Consensus 174 ~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 174 YYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 888776643 2344677777777777888888888887777654 34666666666666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.90 E-value=0.00072 Score=62.13 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=27.1
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhC
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 229 (806)
.|++++|+..+++..+..+.+...+..+...++..|++++|.+.++...+.
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 455555555555555555555555555555555555555555555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.34 E-value=0.0072 Score=49.45 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=68.3
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhc----------cccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSG----------CIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV 757 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 757 (806)
+.+.+++|...++.+....|.+..++..+..+|.. .+.+++|+..++++.+. -|.+..+|..+..+|..
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-DPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-cchhhHHHhhHHHHHHH
Confidence 34456667777777766677777777777666653 34557899999999986 35667889988888866
Q ss_pred -hc-----------HHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047492 758 -SE-----------IDHACELFNRMRRKGYEPDQWTFDILK 786 (806)
Q Consensus 758 -g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~ 786 (806)
|+ +++|.+.|++..+. .|+...+..-+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L 126 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 126 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHH
Confidence 54 68888999888864 66666555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.16 E-value=0.0073 Score=50.27 Aligned_cols=19 Identities=16% Similarity=-0.157 Sum_probs=10.5
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 047492 616 LCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 616 ~~~~~~~~~A~~~~~~m~~ 634 (806)
+.+.|++++|+..|++.++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~ 37 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAME 37 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3445556666665555554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.78 E-value=0.025 Score=46.80 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=12.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 047492 243 DALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~ 263 (806)
..+...|++++|++.|++..+
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~ 37 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAME 37 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 344455666666666666543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.016 Score=43.10 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=17.2
Q ss_pred hhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 711 SLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 711 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.+++.|..+|.+.|++++|+..++++.+.
T Consensus 47 ~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 47 SVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34555566666666666666666666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.021 Score=42.35 Aligned_cols=72 Identities=14% Similarity=-0.045 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcC-----CCCC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHH
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQG-----MDLD-DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTI 205 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (806)
+-.+...+.+.|+++.|+..|++..+.. ..++ ..+++.+..++.+.|++++|+..++++.+..|.+..+++.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 3344555566666666666666554320 0111 2345555666666666666666666666655544444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=1.5 Score=42.98 Aligned_cols=407 Identities=10% Similarity=0.007 Sum_probs=203.2
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHhcccCCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhc
Q 047492 47 ADQALSELGI-RLTESFALQVLNYGKKTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKD 125 (806)
Q Consensus 47 ~~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 125 (806)
+.+.+..+.. +|-|-+--.-|......... -++-.++.+.|+.+.....-...+..+++.+++..+...+ .
T Consensus 25 ~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~---~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~---~-- 96 (450)
T d1qsaa1 25 VEQMMPGLKDYPLYPYLEYRQITDDLMNQPA---VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS---P-- 96 (450)
T ss_dssp HHHHSGGGTTSTTHHHHHHHHHHHTGGGCCH---HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC---C--
T ss_pred HHHHHhhhcCCCCHHHHHHHHHHhccccCCH---HHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc---c--
Confidence 4444444432 45555444444432222222 2344556667776666666667788888888876644333 2
Q ss_pred cCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHH
Q 047492 126 RYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTI 205 (806)
Q Consensus 126 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (806)
..+.+...-.....+....|+..+|...+..+-..|. ..+..+..+...+...|... ...+-.
T Consensus 97 ~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~lt----------------~~~~~~ 159 (450)
T d1qsaa1 97 EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD----------------PLAYLE 159 (450)
T ss_dssp SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC----------------HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCCC----------------HHHHHH
Confidence 2344566656777788888999999888888876653 24445555655555554433 222222
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHH--
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVR-- 283 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 283 (806)
-+......|++..|..+...+.. .........+........+ ....... .++......+..++.+
T Consensus 160 R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~---~~~~~~~------~~~~~~~~~~~~~l~rla 226 (450)
T d1qsaa1 160 RIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTV---LTFARTT------GATDFTRQMAAVAFASVA 226 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGH---HHHHHHS------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhH---HHHHhcC------CCChhhhHHHHHHHHHHh
Confidence 23334455666666665543321 1112233333333222222 1111111 1111112222222222
Q ss_pred cCCHHHHHHHHHhhhhcCCCCCCccc--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHH
Q 047492 284 AGRLDLALEFLKSKNSLEGYVPEVFR--FNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVA 361 (806)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 361 (806)
..+.+.|...+..........++... ...+...+...+..+.+..++......+ .+.......+......+++..+
T Consensus 227 ~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred ccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 24566677766666543332222111 1111122223455566666666655543 2334444455555666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047492 362 IELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALER 441 (806)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (806)
...++.|.... .......-=+..++...|+.+.|...|...... ++ .|..|... +.|..-... .. ..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~~~---~~--~~ 371 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEYELK---ID--KA 371 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCCCCC---CC--CC
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--HcCCCCCCC---cC--CC
Confidence 77777664321 122233334556677778888888777776532 22 23332221 112110000 00 00
Q ss_pred CCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 442 NIKLRDV----TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEME 509 (806)
Q Consensus 442 ~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 509 (806)
...+... .-..-+..+...|....|...+..+.... +......+.....+.|.++.|+.......
T Consensus 372 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 0000000 01123455667788888888887775432 45566677777888888888887766653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.49 E-value=1.1 Score=33.70 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 381 NYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 381 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
+..++.+.+.|+-+.-.++++++.+. -.|++...-.+..+|.+.|...++.+++.++-+.|
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33344444455555555555544432 23444444455555555555555555555544444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.74 E-value=1.6 Score=34.03 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=25.5
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047492 462 KVEVGYLIHSELSRMNKVASENTYIQLIHGFNK----SNRADIAARLLVEMEENG 512 (806)
Q Consensus 462 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 512 (806)
+.++|.++|+...+.+ ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 4455556665555544 33344444444443 345666666666666554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.21 E-value=1.7 Score=33.76 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCC
Q 047492 357 MVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG----DGSTHEAYEVLKNSIDHG 407 (806)
Q Consensus 357 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 407 (806)
+.++|.+.+++..+.| +...+..|-..|.. ..+.++|.++|++..+.|
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 89 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN 89 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC
Confidence 4455555555544433 22233333333322 233445555555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.49 E-value=2.6 Score=31.59 Aligned_cols=64 Identities=9% Similarity=0.050 Sum_probs=35.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 047492 309 RFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL 373 (806)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 373 (806)
.++..++.+.++|+-+.-.+++.++.+.+ ++++...-.+..+|.+-|...++-+++++.-+.|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34444555556666666666665554432 34555555555666666666666666665555553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.71 E-value=1.3 Score=33.65 Aligned_cols=27 Identities=15% Similarity=-0.144 Sum_probs=14.3
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHH
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIE 738 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 738 (806)
.+..|.-+|.+.|++++|.+.++.+++
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 444445555555555555555555555
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.69 E-value=2.9 Score=31.56 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047492 444 KLRDVTYDKFISALCKAN---KVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA 518 (806)
Q Consensus 444 ~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 518 (806)
.++..+--....++.++. +.++++.+++++.+.++.-....+..|.-+|.+.|++++|.+.++.+.+ +.|+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 344555555555666554 3457777787777654331235566677778888888888888888887 566644
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.28 E-value=2.3 Score=30.22 Aligned_cols=45 Identities=4% Similarity=-0.021 Sum_probs=24.2
Q ss_pred HHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHh
Q 047492 114 LMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMR 158 (806)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 158 (806)
.+.+-+..+......|++.+..+.+.+|.|.+++..|+++|+..+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=83.69 E-value=20 Score=34.43 Aligned_cols=375 Identities=8% Similarity=-0.023 Sum_probs=202.4
Q ss_pred CCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047492 109 AKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVV 188 (806)
Q Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 188 (806)
...+..+..+++..+.. |.....-...+..+.+.+++...+..|. ...++...-.....+....|+.+.|...
T Consensus 52 ~~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~ 124 (450)
T d1qsaa1 52 NQPAVTVTNFVRANPTL--PPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQG 124 (450)
T ss_dssp GCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 34455555555554332 2233333445666777777766444332 1123444444566777788888888888
Q ss_pred HHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 047492 189 SKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVV 268 (806)
Q Consensus 189 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 268 (806)
...+-..|...+..+..+... +...|. .+...+-.-+......|++..|..+...+...
T Consensus 125 ~~~lW~~~~~~p~~c~~l~~~----------------~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~---- 183 (450)
T d1qsaa1 125 AKELWLTGKSQPNACDKLFSV----------------WRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD---- 183 (450)
T ss_dssp HHHHHSCSSCCCTHHHHHHHH----------------HHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----
T ss_pred HHHHHhcCCCCchHHHHHHHH----------------HHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----
Confidence 777776655444444444433 333333 33333334455566678888888877654332
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047492 269 KLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLK--ENRLMEVFDLFMDMKEGQISPDGVTMN 346 (806)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~ 346 (806)
........+.... +...+....... ..+......+..++.+ ..+.+.+..++......... +.....
T Consensus 184 -~~~~~~a~~~l~~---~p~~~~~~~~~~------~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~ 252 (450)
T d1qsaa1 184 -YQTIASAIISLAN---NPNTVLTFARTT------GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQ 252 (450)
T ss_dssp -GHHHHHHHHHHHH---CGGGHHHHHHHS------CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHH
T ss_pred -HHHHHHHHHHHHh---ChHhHHHHHhcC------CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHH
Confidence 1122233333322 222333322221 1222222233333332 35778888888877664322 222222
Q ss_pred HHHHH----HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 347 TVLCF----FCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422 (806)
Q Consensus 347 ~ll~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 422 (806)
.+-.. ....+..+.+...+......+ .+.....-.+......+++..+...+..|..... -...-.--+..++
T Consensus 253 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~ 329 (450)
T d1qsaa1 253 ELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLL 329 (450)
T ss_dssp HHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHH
Confidence 22222 233466778888887776654 3444445556666778999999999998864322 2334445677888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC---CH---HHHHHHHHHHHhcC
Q 047492 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA---SE---NTYIQLIHGFNKSN 496 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~---~~~~~li~~~~~~~ 496 (806)
...|+.+.|..+|..+... ++ -|..|.. .+.|..-. +....+.. .. ..-..-+..+...|
T Consensus 330 ~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa--~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g 395 (450)
T d1qsaa1 330 LERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWN 395 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTT
T ss_pred HHcCChhhHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcC
Confidence 9999999999999987642 33 3433322 22222100 00000000 00 01123456778899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHH
Q 047492 497 RADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLN 542 (806)
Q Consensus 497 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 542 (806)
+...|...+..+... . +......+.....+.|....++.....
T Consensus 396 ~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 396 LDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp CHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 999999999988764 3 344555555666667765555544433
|