Citrus Sinensis ID: 047499

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MFQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLYLLSFSK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccEEEccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
MFQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIywghgiygiesasifyfgkhpslLSMAEAAMLAgmipapdlrsplkdcsrgkTFQARVLKRMVEAGFIDIETALWVLkqpldlrddgKKYADRLLYLLSFSK
Flexible Loop (DISEMBL)
mfqatwqlvkntflknertisRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLkqpldlrddgkKYADRLLYLLSFSK
Low Complexity Region (SEG)
MFQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPsllsmaeaamlaGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLYLLSFSK
Disordered region (IsUnstruct)
***ATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLYLLS***
Disordered Region (DISOPRED)
MFQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLYLLSFSK
Disordered Region (DISEMBL)
MFQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLYLLSFSK
Disordered Region (DISPRO)
MFQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLYLLSFSK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLYLLSFSK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
Q07806	822	Penicillin-binding protei	yes	no	0.842	0.155	0.453	3e-24
Q07259	231	Putative transglycosylase	yes	no	0.855	0.562	0.4	3e-21
P70997	691	Penicillin-binding protei	yes	no	0.914	0.201	0.381	3e-20
O87626	798	Penicillin-binding protei	N/A	no	0.835	0.159	0.409	4e-20
P40750	624	Penicillin-binding protei	no	no	0.940	0.229	0.365	1e-19
P31776	853	Penicillin-binding protei	yes	no	0.940	0.167	0.377	2e-19
O66874	726	Penicillin-binding protei	yes	no	0.927	0.194	0.422	6e-19
P38050	714	Penicillin-binding protei	no	no	0.789	0.168	0.383	7e-19
P02918	850	Penicillin-binding protei	N/A	no	0.75	0.134	0.421	2e-18
O05131	798	Penicillin-binding protei	yes	no	0.835	0.159	0.385	2e-18

>sp|Q07806|PBPA_PSEAE Penicillin-binding protein 1A OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mrcA PE=3 SV=2

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 87/128 (67%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+ KN FL NER+ SRKI E++LAL +ER ++K EIL  YV+KIY G+  YGIE+A+ 
Sbjct: 122 TMQVAKNYFLTNERSFSRKINEILLALQIERQLTKDEILELYVNKIYLGNRAYGIEAAAQ 181

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            Y+GK    LS+AE AM+AG+  AP   +PL + +R    +  +L+RM++ GFID +   
Sbjct: 182 VYYGKPIKDLSLAEMAMIAGLPKAPSRYNPLVNPTRSTERRNWILERMLKLGFIDQQRYQ 241

Query: 125 WVLKQPLD 132
             +++P++
Sbjct: 242 AAVEEPIN 249

Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits).
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -

>sp|Q07259|TRG_CUPNH Putative transglycosylase H16_A0665 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=H16_A0665 PE=3 SV=2

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 80/130 (61%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+ +N +L  ++T +RK+ E++L+  +E+A++K EIL  Y++KIY G G YG   A+ 
Sbjct: 102 TMQVARNFYLSRDKTYTRKLYEVLLSYRIEKALTKDEILELYMNKIYLGQGAYGFADAAR 161

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YFGK    L++AE AMLAG+  AP   +P+ +  R +  Q  +L+RM+E G I      
Sbjct: 162 TYFGKRLDQLTLAECAMLAGLPKAPSANNPVANPRRARQRQVYILQRMLELGRISRGEYD 221

Query: 125 WVLKQPLDLR 134
             L +PL LR
Sbjct: 222 GALLEPLRLR 231

Cell wall formation.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: -

>sp|P70997|PBPG_BACSU Penicillin-binding protein 2D OS=Bacillus subtilis (strain 168) GN=pbpG PE=2 SV=3

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 82/139 (58%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q  +N +L++++T  RK  E    + LE+  SK EIL  Y++ IY+GHG YGIE+AS 
Sbjct: 130 TQQYARNLYLEHDKTWKRKWNEAFYTIRLEQNYSKDEILEGYLNTIYYGHGAYGIEAASR 189

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YFGKH   L+ AEAA+LAG+   P   SP  + ++ K  Q  +++ M +   I  + A 
Sbjct: 190 LYFGKHAKNLTDAEAALLAGIPKGPSGYSPYVNETKAKERQKTIVRMMEKQQMISQKKAD 249

Query: 125 WVLKQPLDLRDDGKKYADR 143
            ++K+PL  +   K+ + R
Sbjct: 250 ELIKEPLSYQPLNKQVSKR 268

Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O87626|PBPA_NEIFL Penicillin-binding protein 1A OS=Neisseria flavescens GN=mrcA PE=3 SV=1

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/127 (40%), Positives = 79/127 (62%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+ KN +L +ER+ +RK  E +LA  +E+++SK +IL  Y ++IY G   YG  SA+ 
Sbjct: 124 TQQVAKNFYLSSERSFTRKFNEALLAYKIEQSLSKDKILELYFNQIYLGQRAYGFASAAQ 183

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YF K+ + L++AEAAMLAG+  AP   +P+ +  R K  QA +L  M+E G I ++   
Sbjct: 184 TYFNKNVNDLTLAEAAMLAGLPKAPSAYNPIVNPERAKLRQAYILNNMLEEGMITLQQRD 243

Query: 125 WVLKQPL 131
             LK+ L
Sbjct: 244 QALKEEL 250

Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits).

Neisseria flavescens (taxid: 484)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|P40750|PBPD_BACSU Penicillin-binding protein 4 OS=Bacillus subtilis (strain 168) GN=pbpD PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 83/145 (57%), Gaps = 2/145 (1%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL +N +L +ER+ SRK+ E+  +  LE+  +K EIL +Y++ IY+ +G+YG+ SA+ 
Sbjct: 132 TQQLSRNLYLSHERSFSRKLTELAYSYQLEKKYTKNEILEAYLNTIYFNNGVYGVGSAAQ 191

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
           FYF K    L++ E A +  +   P L  PLK     K+ Q R+LK + +AG I  +   
Sbjct: 192 FYFSKPLKSLTVGEMAFICAIPNNPTLYDPLKHFDYTKSRQERLLKGLKDAGVITDKELK 251

Query: 125 WVLKQ--PLDLRDDGKKYADRLLYL 147
             +KQ   LD+     KY D + Y+
Sbjct: 252 KAVKQKIKLDVEKREDKYPDYVSYV 276

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P31776|PBPA_HAEIN Penicillin-binding protein 1A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mrcA PE=1 SV=2

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 85/143 (59%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL +N FL +E+TI RK  E VLA+ +E  ++K EIL  Y++KI+ G+  YG+ +A+ 
Sbjct: 111 TQQLARNFFLTSEKTIIRKAREAVLAVEIENTLNKQEILELYLNKIFLGYRSYGVAAAAQ 170

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YFGK  + L+++E A++AG+  AP   +PL    R +  +  VL RM++  +I  E   
Sbjct: 171 TYFGKSLNELTLSEMAIIAGLPKAPSTMNPLYSLKRSEERRNVVLSRMLDEKYISKEEYD 230

Query: 125 WVLKQPLDLRDDGKKYADRLLYL 147
             LK+P+     G K+  R  Y+
Sbjct: 231 AALKEPIVASYHGAKFEFRADYV 253

Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits).

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|O66874|PBPA_AQUAE Penicillin-binding protein 1A OS=Aquifex aeolicus (strain VF5) GN=mrcA PE=1 SV=1

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 86/142 (60%), Gaps = 1/142 (0%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL KN FL  ERT+ RKI E +LA+ +ER   K +I+  Y+++IY G G YG+E+A+ 
Sbjct: 119 TQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQ 178

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YFGKH   LS+ EAA+LA +  AP   +P     R    +  VLKRM+E G+I  E   
Sbjct: 179 VYFGKHVWELSLDEAALLAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPEQYE 238

Query: 125 WVLKQPLDLRDDGK-KYADRLL 145
             + +PL ++ + K K++D  L
Sbjct: 239 EAVNKPLTVKKENKYKFSDYFL 260

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|P38050|PBPF_BACSU Penicillin-binding protein 1F OS=Bacillus subtilis (strain 168) GN=pbpF PE=2 SV=2

 Score = 92.8 bits (229), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 77/120 (64%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL KN FL +++T  RK  E+++A+ LER  SK ++L  Y++++Y+GHG+YGI++AS 
Sbjct: 123 TQQLAKNIFLTHDKTFLRKTKEVIIAINLERDYSKDKLLEMYLNQLYFGHGVYGIQAASH 182

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
           +YF K    L+++E A+LA +  AP   SP+    + K  +  +L  M + G+I  + A+
Sbjct: 183 YYFNKEVKDLTVSEGAVLAAIPKAPSTYSPILHPDKNKERRDTILGMMNDQGYISAKEAV 242

Cell wall formation. May be involved in outgrowth of the germinated spore or it could function in the synthesis of the germ cell wall.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P02918|PBPA_ECOLI Penicillin-binding protein 1A OS=Escherichia coli (strain K12) GN=mrcA PE=1 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/114 (42%), Positives = 72/114 (63%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL +N FL  ERT+ RKI E+ LA+ +E+ ++K EIL  Y++KIY G+  YG+ +A+ 
Sbjct: 122 TQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQ 181

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFI 118
            YFGK    L++ E A++AG+  AP   +PL    R    +  VL RM++ G+I
Sbjct: 182 VYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYI 235

Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits).

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|O05131|PBPA_NEIGO Penicillin-binding protein 1A OS=Neisseria gonorrhoeae GN=mrcA PE=1 SV=3

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 76/127 (59%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+ KN +L +E+T +RK  E++LA  +E+++SK +IL  Y ++IY G   YG  SA+ 
Sbjct: 124 TQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDKILELYFNQIYLGQRAYGFASAAQ 183

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YF K+   L++AEAAMLAG+  AP   +P+ +  R K  Q  +L  M+E   I ++   
Sbjct: 184 IYFNKNVRDLTLAEAAMLAGLPKAPSAYNPIVNPERAKLRQKYILNNMLEEKMITVQQRD 243

Query: 125 WVLKQPL 131
             L + L
Sbjct: 244 QALNEEL 250

Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity). Essential for cell wall synthesis.

Neisseria gonorrhoeae (taxid: 485)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
302141848	376	unnamed protein product [Vitis vinifera]	0.960	0.388	0.746	4e-57
302765831	918	hypothetical protein SELMODRAFT_85583 [S	0.848	0.140	0.627	3e-41
168037926	900	penicillin-binding protein [Physcomitrel	0.953	0.161	0.581	3e-41
76880194	936	penicillin-binding protein [Physcomitrel	0.953	0.154	0.581	4e-41
147784458	1114	hypothetical protein VITISV_029567 [Viti	0.677	0.092	0.699	8e-37
119486139	604	Penicillin-binding protein 1A [Lyngbya s	0.835	0.210	0.527	5e-28
86609946	672	1A family penicillin-binding protein [Sy	0.848	0.191	0.503	1e-27
269792666	751	penicillin-binding protein [Thermanaerov	0.888	0.179	0.503	3e-27
428775817	643	penicillin-binding protein [Halothece sp	0.835	0.197	0.519	3e-27
291569375	644	penicillin-binding protein [Arthrospira	0.835	0.197	0.511	1e-26

>gi|302141848|emb|CBI19051.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 124/146 (84%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QLVKNT LKNERT SRKIVEMVLALALER ISKW ILS Y+SKIYWGHGIYG+ESASI
Sbjct: 170 TQQLVKNTCLKNERTFSRKIVEMVLALALERTISKWRILSLYMSKIYWGHGIYGVESASI 229

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
           FYFGKHPSLL + E+A+LAG+IPAP+LRSP +DCSRGKTFQARVLKRMVE GF+D+ETAL
Sbjct: 230 FYFGKHPSLLCLGESALLAGIIPAPELRSPFRDCSRGKTFQARVLKRMVEFGFLDVETAL 289

Query: 125 WVLKQPLDLRDDGKKYADRLLYLLSF 150
             +KQ L  R +  +Y+D +L  LS 
Sbjct: 290 LAVKQSLQPRINCPEYSDGILLQLSL 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302765831|ref|XP_002966336.1| hypothetical protein SELMODRAFT_85583 [Selaginella moellendorffii] gi|300165756|gb|EFJ32363.1| hypothetical protein SELMODRAFT_85583 [Selaginella moellendorffii]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 103/129 (79%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QLVKN FL NER  SRK VE++LAL LE+ +SKW+IL  Y+ KIYWGHG+YG+++A+ 
Sbjct: 237 TQQLVKNLFLTNERKWSRKAVEIILALLLEKRMSKWDILRLYLDKIYWGHGVYGLKAAAA 296

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
           FYFGKHPSLL++AE AMLAG+IPAP+L SP +D SRGK  QAR L+RMVE GF+D ++A 
Sbjct: 297 FYFGKHPSLLTLAECAMLAGIIPAPELLSPYRDPSRGKKPQARTLRRMVEVGFLDADSAA 356

Query: 125 WVLKQPLDL 133
             + +PL L
Sbjct: 357 AAVNEPLSL 365

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168037926|ref|XP_001771453.1| penicillin-binding protein [Physcomitrella patens subsp. patens] gi|162677180|gb|EDQ63653.1| penicillin-binding protein [Physcomitrella patens subsp. patens]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 107/148 (72%), Gaps = 3/148 (2%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QLVKN FL N+R  SRK +EM+LA+ LER +SKW+IL  Y++KIYWGHG+YGIE A+ 
Sbjct: 251 TQQLVKNVFLTNDRKWSRKFMEMILAILLERQMSKWDILHHYLNKIYWGHGVYGIEGAAA 310

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YFGKHPS+L++ E AMLAG+IPAP+  SP +D SRGK  QAR L+RMVEAGF+D  TA 
Sbjct: 311 LYFGKHPSVLTLGECAMLAGIIPAPEYLSPYRDPSRGKKPQARTLRRMVEAGFLDAATAA 370

Query: 125 WVLKQPLDL---RDDGKKYADRLLYLLS 149
             + +PL L    DDG     R  Y +S
Sbjct: 371 AAVNEPLRLGLEGDDGSSGPWRAPYFVS 398

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76880194|dbj|BAE45868.1| penicillin-binding protein [Physcomitrella patens] gi|76880196|dbj|BAE45869.1| penicillin-binding protein [Physcomitrella patens]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 107/148 (72%), Gaps = 3/148 (2%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QLVKN FL N+R  SRK +EM+LA+ LER +SKW+IL  Y++KIYWGHG+YGIE A+ 
Sbjct: 251 TQQLVKNVFLTNDRKWSRKFMEMILAILLERQMSKWDILHHYLNKIYWGHGVYGIEGAAA 310

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YFGKHPS+L++ E AMLAG+IPAP+  SP +D SRGK  QAR L+RMVEAGF+D  TA 
Sbjct: 311 LYFGKHPSVLTLGECAMLAGIIPAPEYLSPYRDPSRGKKPQARTLRRMVEAGFLDAATAA 370

Query: 125 WVLKQPLDL---RDDGKKYADRLLYLLS 149
             + +PL L    DDG     R  Y +S
Sbjct: 371 AAVNEPLRLGLEGDDGSSGPWRAPYFVS 398

Source: Physcomitrella patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784458|emb|CAN72729.1| hypothetical protein VITISV_029567 [Vitis vinifera]

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 86/103 (83%)

Query: 48   SKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQAR 107
            S IYWGHGIYG+ESASIFYFGKHPSLL + E+A+LAG+IPAP+LRSP +DCSRGKTFQAR
Sbjct: 951  SMIYWGHGIYGVESASIFYFGKHPSLLCLGESALLAGIIPAPELRSPFRDCSRGKTFQAR 1010

Query: 108  VLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLYLLSF 150
            VLKRMVE GF+D+ETAL  +KQ L  R +  +Y+D +L  LS 
Sbjct: 1011 VLKRMVEFGFLDVETALLAVKQSLQPRINCPEYSDGILLQLSL 1053

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119486139|ref|ZP_01620199.1| Penicillin-binding protein 1A [Lyngbya sp. PCC 8106] gi|119456630|gb|EAW37759.1| Penicillin-binding protein 1A [Lyngbya sp. PCC 8106]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/127 (52%), Positives = 87/127 (68%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QLVKN FL   RTISRK  E V+A+ LE+ ++K EIL  Y++++YWGH +YG+E+AS+
Sbjct: 111 TMQLVKNLFLSPNRTISRKAAEAVMAIRLEQILAKDEILELYLNQVYWGHNLYGVETASL 170

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YF K    L++AEA+MLAG+IPAP+  SP  D  + K  QA VLKRM E  +I  E   
Sbjct: 171 SYFNKSAKDLTLAEASMLAGLIPAPEDFSPFVDYKKSKQRQATVLKRMRELKWITPEEEA 230

Query: 125 WVLKQPL 131
             LKQPL
Sbjct: 231 EALKQPL 237

Source: Lyngbya sp. PCC 8106

Species: Lyngbya sp. PCC 8106

Genus: Lyngbya

Order: Oscillatoriales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|86609946|ref|YP_478708.1| 1A family penicillin-binding protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558488|gb|ABD03445.1| penicillin-binding protein, 1A family [Synechococcus sp. JA-2-3B'a(2-13)]

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/129 (50%), Positives = 89/129 (68%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QLVKN FL+ ERT+SRK+ E+VLA+ LE+  SK EIL  Y++++YWGH +YGI++A+ 
Sbjct: 182 TMQLVKNLFLRPERTLSRKVAEIVLAVRLEQVFSKDEILEMYLNQVYWGHNLYGIQAAAR 241

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YF K  S L++AEAAMLAG++PAP+  SP ++    K  Q  VL R+VE  +I  E A 
Sbjct: 242 SYFNKDASELNLAEAAMLAGILPAPETLSPFRNLEGAKRRQHLVLDRLVELKWITPEEAQ 301

Query: 125 WVLKQPLDL 133
              +Q L L
Sbjct: 302 AAREQKLTL 310

Source: Synechococcus sp. JA-2-3B'a(2-13)

Species: Synechococcus sp. JA-2-3B'a(2-13)

Genus: Synechococcus

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|269792666|ref|YP_003317570.1| penicillin-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100301|gb|ACZ19288.1| penicillin-binding protein, 1A family [Thermanaerovibrio acidaminovorans DSM 6589]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 89/135 (65%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL +N FL +E+ +SRKI E VL+L LER  +K +IL  YV+ IY GHG YGI SAS 
Sbjct: 133 TQQLSRNMFLSHEKRLSRKIKEAVLSLRLERVYTKDQILEMYVNTIYMGHGTYGIGSASQ 192

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
           FYFGK PS L++AEA+ LAG+I AP+  SP+K+ +  KT Q  VL RM+E G+I  E   
Sbjct: 193 FYFGKSPSDLTLAEASTLAGLIAAPEYYSPIKNPTASKTRQRYVLGRMLELGWITAEQHR 252

Query: 125 WVLKQPLDLRDDGKK 139
             L   L L+   ++
Sbjct: 253 EALSDHLSLKGKARR 267

Source: Thermanaerovibrio acidaminovorans DSM 6589

Species: Thermanaerovibrio acidaminovorans

Genus: Thermanaerovibrio

Family: Synergistaceae

Order: Synergistales

Class: Synergistia

Phylum: Synergistetes

Superkingdom: Bacteria

>gi|428775817|ref|YP_007167604.1| penicillin-binding protein [Halothece sp. PCC 7418] gi|428690096|gb|AFZ43390.1| penicillin-binding protein, 1A family [Halothece sp. PCC 7418]

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/127 (51%), Positives = 85/127 (66%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QLVKN FL  ERT SRK+ E VLAL +E+  +K EIL  Y++ IYWGH  YG+E+A+ 
Sbjct: 150 TMQLVKNVFLSPERTFSRKLAEAVLALRVEQVFTKDEILEMYLNTIYWGHNNYGVETAAQ 209

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YF K  S L++AEA M+AG+I AP+  SP  D +  K  QA VL RM E G+I  + A 
Sbjct: 210 SYFQKSASELNLAEATMMAGLIQAPEKYSPFIDYAATKGRQATVLNRMEEIGWIPAQVAD 269

Query: 125 WVLKQPL 131
            +L+QPL
Sbjct: 270 QILQQPL 276

Source: Halothece sp. PCC 7418

Species: Halothece sp. PCC 7418

Genus: Halothece

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|291569375|dbj|BAI91647.1| penicillin-binding protein [Arthrospira platensis NIES-39]

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/127 (51%), Positives = 84/127 (66%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QLVKN FL   RTISRK  E V+A+ LE+ + K EIL  Y++++YWGH +YGIE+AS 
Sbjct: 151 TMQLVKNLFLSPSRTISRKAAEAVMAIRLEQILDKDEILELYLNQVYWGHNLYGIETASQ 210

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YF K  S L ++EAAM+AG+I AP+  SP  +    K  QA+VL RMVE  +I  E A 
Sbjct: 211 SYFNKPASELKLSEAAMIAGLISAPEDYSPFANYQLAKQRQAQVLNRMVELNWITPEEAA 270

Query: 125 WVLKQPL 131
              K+PL
Sbjct: 271 EARKEPL 277

Source: Arthrospira platensis NIES-39

Species: Arthrospira platensis

Genus: Arthrospira

Order: Oscillatoriales

Phylum: Cyanobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TIGR_CMR|CHY_1563	798	CHY_1563 "penicillin-binding p	0.848	0.161	0.418	4.6e-18
UNIPROTKB|Q81YT9	258	BAS0512 "Penicillin-binding do	0.881	0.519	0.365	8.6e-17
TIGR_CMR|BA_0543	258	BA_0543 "penicillin-binding do	0.881	0.519	0.365	8.6e-17
UNIPROTKB|P40750	624	pbpD "Penicillin-binding prote	0.934	0.227	0.363	5.4e-16
TIGR_CMR|BA_5623	683	BA_5623 "penicillin-binding pr	0.907	0.202	0.352	1e-15
TIGR_CMR|CHY_1635	763	CHY_1635 "penicillin-binding p	0.927	0.184	0.351	2e-15
TIGR_CMR|GSU_3133	817	GSU_3133 "penicillin-binding p	0.947	0.176	0.333	6e-15
UNIPROTKB|P38050	714	pbpF "Penicillin-binding prote	0.848	0.180	0.333	6.3e-15
UNIPROTKB|P70997	691	pbpG "Penicillin-binding prote	0.914	0.201	0.330	7.6e-15
TIGR_CMR|BA_1474	673	BA_1474 "penicillin-binding pr	0.921	0.208	0.36	1.2e-14

TIGR_CMR|CHY_1563 CHY_1563 "penicillin-binding protein, 1A family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 230 (86.0 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 54/129 (41%), Positives = 73/129 (56%)

Query:     5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
             T QLVK TFL +E+T+ RKI E  LA+ LERA +K EIL  Y+++ Y+G G YGI++A+ 
Sbjct:   123 TQQLVKLTFLTSEKTLKRKIQEAYLAIQLERAFTKDEILEMYLNRSYFGEGAYGIKAAAQ 182

Query:    65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
              YFGK              G++PAP   SPL +       +  VL +MV AG I  + A 
Sbjct:   183 TYFGKDLDELTLSEAALLAGLLPAPSRYSPLNNKELALNRRNIVLNKMVRAGLITEDQAR 242

Query:   125 WVLKQPLDL 133
                 +PL L
Sbjct:   243 KAKSEPLIL 251

GO:0008233 "peptidase activity" evidence=ISS

GO:0008658 "penicillin binding" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

UNIPROTKB|Q81YT9 BAS0512 "Penicillin-binding domain protein" [Bacillus anthracis (taxid:1392)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 49/134 (36%), Positives = 70/134 (52%)

Query:     5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
             T QL KN FL NERT SRK  E+     +ER  +K EIL  YVS IY+G G +GIE A+ 
Sbjct:   110 TQQLSKNAFLTNERTFSRKWKEIFYTKKIERTFTKDEILKLYVSNIYYGEGAWGIEKAAN 169

Query:    65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
              YFGK               ++ AP   SP ++  +    +  VL+ M + G+I+ +  +
Sbjct:   170 LYFGKKVSQLTLAESAMMAAVVKAPAYYSPAQNYDKAVERRNVVLRLMEKEGYINHDEYM 229

Query:   125 WVLKQPLDLRDDGK 138
               + + L +R D K
Sbjct:   230 QAVSEKLVIRHDIK 243

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0543 BA_0543 "penicillin-binding domain protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 49/134 (36%), Positives = 70/134 (52%)

Query:     5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
             T QL KN FL NERT SRK  E+     +ER  +K EIL  YVS IY+G G +GIE A+ 
Sbjct:   110 TQQLSKNAFLTNERTFSRKWKEIFYTKKIERTFTKDEILKLYVSNIYYGEGAWGIEKAAN 169

Query:    65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
              YFGK               ++ AP   SP ++  +    +  VL+ M + G+I+ +  +
Sbjct:   170 LYFGKKVSQLTLAESAMMAAVVKAPAYYSPAQNYDKAVERRNVVLRLMEKEGYINHDEYM 229

Query:   125 WVLKQPLDLRDDGK 138
               + + L +R D K
Sbjct:   230 QAVSEKLVIRHDIK 243

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P40750 pbpD "Penicillin-binding protein 4" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 209 (78.6 bits), Expect = 5.4e-16, P = 5.4e-16
 Identities = 53/146 (36%), Positives = 79/146 (54%)

Query:     5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
             T QL +N +L +ER+ SRK+ E+  +  LE+  +K EIL +Y++ IY+ +G+YG+ SA+ 
Sbjct:   132 TQQLSRNLYLSHERSFSRKLTELAYSYQLEKKYTKNEILEAYLNTIYFNNGVYGVGSAAQ 191

Query:    65 FYFGKHPXXXXXXXXXXXXGMIPA-PDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETA 123
             FYF K P              IP  P L  PLK     K+ Q R+LK + +AG I  +  
Sbjct:   192 FYFSK-PLKSLTVGEMAFICAIPNNPTLYDPLKHFDYTKSRQERLLKGLKDAGVITDKEL 250

Query:   124 LWVLKQP--LDLRDDGKKYADRLLYL 147
                +KQ   LD+     KY D + Y+
Sbjct:   251 KKAVKQKIKLDVEKREDKYPDYVSYV 276

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|BA_5623 BA_5623 "penicillin-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 207 (77.9 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 49/139 (35%), Positives = 71/139 (51%)

Query:     5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
             T Q  +N +L +++T  RK++E +  + LE   +K  IL  Y++ IY+GHG YGIE+AS 
Sbjct:   127 TQQYARNLYLDHDKTWKRKLLEAMYTIRLEVNYNKNHILEGYLNTIYYGHGAYGIEAASR 186

Query:    65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
              YF K              G+   P + SP     R K  Q+ +L  MVE G+I  + A 
Sbjct:   187 LYFDKTAKELTLAEASMLAGIPKGPSVYSPFLKEDRAKGRQSLILDEMVEQGYITKKQAA 246

Query:   125 WVLKQPLDLRD-DGKKYAD 142
                K+PL     D KK A+
Sbjct:   247 SAKKEPLTFASLDTKKVAE 265

GO:0008658 "penicillin binding" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1635 CHY_1635 "penicillin-binding protein, 1A family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 205 (77.2 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 52/148 (35%), Positives = 81/148 (54%)

Query:     5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
             T QLV+N +L  E+T +RKI E +LA+ LER  +K EIL  Y++ IY+G+G YGIE A+ 
Sbjct:   120 TQQLVRNVYLTQEKTFARKIKEALLAIQLERVYTKKEILEMYLNVIYFGNGNYGIEEAAQ 179

Query:    65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
              YFGK              G+   P+  +P  +     + +  VL +MVE G+I  E A 
Sbjct:   180 NYFGKPASKLTLGEAAMLAGIPRRPNYYAPTINYDAAVSRKNLVLDKMVEQGYITQEEAE 239

Query:   125 WVLKQPLDL----RDDGKKYA---DRLL 145
                ++ + +    ++ G +YA   D++L
Sbjct:   240 KAKREEIKINPKAQNQGNQYAAVIDKIL 267

GO:0008233 "peptidase activity" evidence=ISS

GO:0008658 "penicillin binding" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TIGR_CMR|GSU_3133 GSU_3133 "penicillin-binding protein, 1A family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 201 (75.8 bits), Expect = 6.0e-15, P = 6.0e-15
 Identities = 48/144 (33%), Positives = 78/144 (54%)

Query:     5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
             T Q+ K+  L  E++ +RK+ E VLA  +E  +SK +IL  Y+++IY G G YG++ A+ 
Sbjct:   140 TQQVAKSMLLTPEKSYTRKLKEAVLAKRMEERLSKDDILYIYLNQIYLGAGSYGVQVAAE 199

Query:    65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
              YFGK+             G+  AP+  SP+K   R +  QA VL+RMV+ G++    A 
Sbjct:   200 TYFGKNVEQLNLAEMAMLAGLPKAPNAYSPIKHLDRARERQAYVLERMVKEGYVTQAEAD 259

Query:   125 WVLKQPLDLRDDGKKYADRLLYLL 148
                  P+ ++   K  +++  Y L
Sbjct:   260 HARATPIVIQSMKKVNSEQSAYFL 283

GO:0008233 "peptidase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

GO:0016763 "transferase activity, transferring pentosyl groups" evidence=ISS

UNIPROTKB|P38050 pbpF "Penicillin-binding protein 1F" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 200 (75.5 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 43/129 (33%), Positives = 71/129 (55%)

Query:     5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
             T QL KN FL +++T  RK  E+++A+ LER  SK ++L  Y++++Y+GHG+YGI++AS 
Sbjct:   123 TQQLAKNIFLTHDKTFLRKTKEVIIAINLERDYSKDKLLEMYLNQLYFGHGVYGIQAASH 182

Query:    65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
             +YF K               +  AP   SP+    + K  +  +L  M + G+I  + A+
Sbjct:   183 YYFNKEVKDLTVSEGAVLAAIPKAPSTYSPILHPDKNKERRDTILGMMNDQGYISAKEAV 242

Query:   125 WVLKQPLDL 133
                 + L L
Sbjct:   243 TAQGRTLGL 251

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P70997 pbpG "Penicillin-binding protein 2D" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 199 (75.1 bits), Expect = 7.6e-15, P = 7.6e-15
 Identities = 46/139 (33%), Positives = 73/139 (52%)

Query:     5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
             T Q  +N +L++++T  RK  E    + LE+  SK EIL  Y++ IY+GHG YGIE+AS 
Sbjct:   130 TQQYARNLYLEHDKTWKRKWNEAFYTIRLEQNYSKDEILEGYLNTIYYGHGAYGIEAASR 189

Query:    65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
              YFGKH             G+   P   SP  + ++ K  Q  +++ M +   I  + A 
Sbjct:   190 LYFGKHAKNLTDAEAALLAGIPKGPSGYSPYVNETKAKERQKTIVRMMEKQQMISQKKAD 249

Query:   125 WVLKQPLDLRDDGKKYADR 143
              ++K+PL  +   K+ + R
Sbjct:   250 ELIKEPLSYQPLNKQVSKR 268

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|BA_1474 BA_1474 "penicillin-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 197 (74.4 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 54/150 (36%), Positives = 79/150 (52%)

Query:     5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
             T QL KN FL  +RT SRKI E  L   +ER  +K EI+  Y+++IY+G G +GI+ A+ 
Sbjct:   133 TQQLAKNVFLTQDRTYSRKIKEYFLTKKIERTYTKDEIIEMYMNQIYFGEGAWGIKRAAK 192

Query:    65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFI------ 118
              YF K              G+I AP   SP K+ ++    +  VL  M E G+I      
Sbjct:   193 SYFDKDVKDLTISEAATIAGLIKAPSAYSPYKNFNKSIERRNVVLSLMKEQGYISDEQYN 252

Query:   119 -DIETALWVLKQPLDLRDDGK--KYADRLL 145
              + E+ L VLK+ +D +  GK  +Y D ++
Sbjct:   253 KEKESGL-VLKRGVDDKYKGKYSQYVDYIV 281

GO:0008658 "penicillin binding" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015349001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (169 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037717001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (527 aa)			•				•		0.579
	GSVIVG00027807001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (471 aa)			•				•		0.457
	GSVIVG00000431001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (510 aa)			•				•		0.417
	GSVIVG00017740001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (320 aa)			•			•	•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
pfam00912	177	pfam00912, Transgly, Transglycosylase	2e-47
TIGR02074	531	TIGR02074, PBP_1a_fam, penicillin-binding protein,	2e-46
COG0744	661	COG0744, MrcB, Membrane carboxypeptidase (penicill	1e-42
COG5009	797	COG5009, MrcA, Membrane carboxypeptidase/penicilli	1e-38
PRK11636	850	PRK11636, mrcA, penicillin-binding protein 1a; Pro	9e-25
COG4953	733	COG4953, PbpC, Membrane carboxypeptidase/penicilli	7e-23
TIGR02071	730	TIGR02071, PBP_1b, penicillin-binding protein 1B	9e-23
TIGR02073	727	TIGR02073, PBP_1c, penicillin-binding protein 1C	2e-22
PRK00056	236	PRK00056, mtgA, monofunctional biosynthetic peptid	9e-21
TIGR02070	224	TIGR02070, mono_pep_trsgly, monofunctional biosynt	2e-20
PRK13481	232	PRK13481, PRK13481, glycosyltransferase; Provision	3e-18
PRK14850	764	PRK14850, PRK14850, penicillin-binding protein 1b;	4e-18
PRK09506	830	PRK09506, mrcB, bifunctional glycosyl transferase/	1e-16
PRK11240	772	PRK11240, PRK11240, penicillin-binding protein 1C;	3e-12

>gnl|CDD|201501 pfam00912, Transgly, Transglycosylase

 Score =  151 bits (383), Expect = 2e-47
 Identities = 61/109 (55%), Positives = 79/109 (72%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL KN FL  ERT+SRK+ E +LAL LER  SK EIL  Y++ +Y+G GIYG+E+A+ 
Sbjct: 69  TQQLAKNLFLTTERTLSRKLREAILALRLERRYSKDEILELYLNTVYFGGGIYGVEAAAR 128

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMV 113
            YFGK PS L++AEAA+LAG+ PAP   +PL++  R K  +  VLKRMV
Sbjct: 129 AYFGKPPSDLTLAEAALLAGLPPAPSRYNPLRNPERAKKRRNLVLKRMV 177

The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerisation of murein glycan chains. Length = 177

>gnl|CDD|233710 TIGR02074, PBP_1a_fam, penicillin-binding protein, 1A family

 Score =  157 bits (399), Expect = 2e-46
 Identities = 68/135 (50%), Positives = 91/135 (67%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL KN +L NERTI+RKI E +LAL LE+ +SK EIL  Y+++IY+G+G YGIE+A+ 
Sbjct: 58  TQQLAKNLYLTNERTITRKIQEALLALKLEQKLSKDEILELYLNRIYFGNGAYGIEAAAQ 117

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
           FYFGK  + L++AEAAMLAG+  AP   +P K+  R K  +  VL  MVE G+I  E A 
Sbjct: 118 FYFGKSVNDLTLAEAAMLAGLPKAPSAYNPFKNPERAKDRRNLVLSNMVENGYITAEEAE 177

Query: 125 WVLKQPLDLRDDGKK 139
             + +P+ L    KK
Sbjct: 178 EAINEPIQLYLQTKK 192

Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 531

>gnl|CDD|223815 COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]

 Score =  149 bits (377), Expect = 1e-42
 Identities = 60/130 (46%), Positives = 85/130 (65%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL KN FL NERT+ RK  E VLAL LE   SK EIL  Y++++Y+G G YG+E+A+ 
Sbjct: 133 TQQLAKNLFLSNERTLDRKAKEAVLALWLEALYSKDEILEMYLNQVYFGRGAYGVEAAAQ 192

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
           +YFGK    L++A+AA+LAG++ AP L +P +     +  +  VL+RMVE G+I  E   
Sbjct: 193 YYFGKPAKDLTLAQAALLAGLLKAPSLYNPYRPPEYARARRNLVLRRMVEQGYITAEEYD 252

Query: 125 WVLKQPLDLR 134
             L +PL ++
Sbjct: 253 AALAEPLQVQ 262

Length = 661

>gnl|CDD|227342 COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]

 Score =  138 bits (349), Expect = 1e-38
 Identities = 62/143 (43%), Positives = 89/143 (62%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+ KN FL +ERT+ RKI E +LA+ +E+++SK EIL  Y++KIY G+  YG+ +A+ 
Sbjct: 123 TQQVAKNFFLSSERTLERKIKEALLAIRIEQSLSKDEILELYLNKIYLGYRAYGVAAAAQ 182

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            YFGK  + L++AEAAMLAG+  AP   +PL +  R K  +  VL RM+E G+I  E A 
Sbjct: 183 TYFGKSVNELTLAEAAMLAGLPKAPSNYNPLYNPERAKERRNYVLNRMLEEGYITQEQAD 242

Query: 125 WVLKQPLDLRDDGKKYADRLLYL 147
               +PL  +  G + A    Y 
Sbjct: 243 EAKAEPLVAKYHGPEIAFSAPYF 265

Length = 797

>gnl|CDD|183248 PRK11636, mrcA, penicillin-binding protein 1a; Provisional

 Score = 98.7 bits (246), Expect = 9e-25
 Identities = 48/114 (42%), Positives = 72/114 (63%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL +N FL  ERT+ RKI E  LA+ +E+ ++K EIL  Y++KIY G+  YG+ +A+ 
Sbjct: 122 TQQLARNFFLSPERTLMRKIKEAFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQ 181

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFI 118
            YFGK    L+++E A++AG+  AP   +PL    R    +  VL RM++ G+I
Sbjct: 182 VYFGKTVDQLTLSEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYI 235

Length = 850

>gnl|CDD|227289 COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]

 Score = 93.2 bits (232), Expect = 7e-23
 Identities = 42/107 (39%), Positives = 62/107 (57%)

Query: 17  ERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSM 76
            RT+  KI ++  A+ LE  +SK EIL  Y+++  +G  I G+ +AS+ YFGK P  LS+
Sbjct: 125 PRTLGGKIRQIWRAIQLESRLSKREILELYLNRAPYGGNIEGVRAASLAYFGKEPKRLSL 184

Query: 77  AEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETA 123
           AEAA+LA +   P+ R P ++    +  + RVL RM   G    E A
Sbjct: 185 AEAALLAVLPQNPERRRPDRNPEAAEAARNRVLTRMAVQGVWSEEEA 231

Length = 733

>gnl|CDD|233707 TIGR02071, PBP_1b, penicillin-binding protein 1B

 Score = 92.9 bits (231), Expect = 9e-23
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 4/137 (2%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGH----GIYGIE 60
           T QLVKN FL NER++ RK  E  +AL L+   SK  IL  Y++++Y G      I+G  
Sbjct: 203 TQQLVKNLFLSNERSLWRKANEAYMALILDARYSKDRILELYLNEVYLGQSGDDAIHGFP 262

Query: 61  SASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDI 120
            AS +YFG+    LS+ + A+L GM+  P   +P ++  R    +  VL+ + E   ID 
Sbjct: 263 LASQYYFGRPLGELSLDQVALLVGMVKGPSYYNPWRNPDRALERRNLVLRLLQEQKIIDD 322

Query: 121 ETALWVLKQPLDLRDDG 137
           E    +  +PL ++  G
Sbjct: 323 EEYDMLSARPLGVQKKG 339

Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 730

>gnl|CDD|233709 TIGR02073, PBP_1c, penicillin-binding protein 1C

 Score = 92.1 bits (229), Expect = 2e-22
 Identities = 47/119 (39%), Positives = 68/119 (57%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL +    +  RT++ K+ +M  A+ LE   SK EIL +Y++   +G  + G+ +AS+
Sbjct: 89  TMQLARLLDPELSRTLTGKLRQMWRAIQLEARYSKREILEAYLNLAPYGGNLEGLRAASL 148

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETA 123
            YFGK PS LS+AEAA+LA +  AP  R   +     K  + R+L RMVE G  D E  
Sbjct: 149 IYFGKEPSSLSLAEAALLAALPQAPSARRLDRLPKAAKAARDRLLDRMVEQGPDDSEQV 207

This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 727

>gnl|CDD|234603 PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional

 Score = 84.1 bits (209), Expect = 9e-21
 Identities = 41/110 (37%), Positives = 60/110 (54%)

Query: 7   QLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFY 66
           Q  KN FL   R+  RK +E  L L +E   SK  IL  Y++   WG GI+G E+A+  Y
Sbjct: 118 QTAKNLFLWPGRSWVRKGLEAPLTLMIELVWSKRRILEVYLNIAEWGPGIFGAEAAARHY 177

Query: 67  FGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAG 116
           FGK  S LS ++AA+LA ++P P      +     +   A +L++M + G
Sbjct: 178 FGKPASKLSASQAALLAAVLPNPRRYDAHRPSPYVRRRAAWILRQMRQLG 227

Length = 236

>gnl|CDD|233706 TIGR02070, mono_pep_trsgly, monofunctional biosynthetic peptidoglycan transglycosylase

 Score = 82.9 bits (205), Expect = 2e-20
 Identities = 37/110 (33%), Positives = 58/110 (52%)

Query: 7   QLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFY 66
           QL KN FL + R+  RK +E      LE   SK  IL  Y++ + WG+G++G E+A+ +Y
Sbjct: 113 QLAKNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGVFGAEAAARYY 172

Query: 67  FGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAG 116
           F +  S L+  +AA LA ++P P      +     +     +LK+M   G
Sbjct: 173 FKRSASNLTRGQAARLAAVLPNPKYYDENRPGPYVRRKATWILKQMGYLG 222

This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by Pfam model pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan) [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 224

>gnl|CDD|184078 PRK13481, PRK13481, glycosyltransferase; Provisional

 Score = 77.5 bits (191), Expect = 3e-18
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 13/124 (10%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+VKN F  NER+ +RK+ E+ +A  +E+  SK EILS Y++ IY+G   Y +E A+ 
Sbjct: 100 TQQVVKNYFYDNERSFTRKVKELFVAHRVEKQYSKNEILSFYLNNIYFGDNQYTLEGAAN 159

Query: 65  FYFG-------KHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARV---LKRMVE 114
            YFG          S +++ ++A+LA  + AP + + + D S  + F  RV   L++M +
Sbjct: 160 HYFGTTVNKNSTTMSHITVLQSAILASKVNAPSVYN-INDMS--ENFTQRVSTNLEKMKQ 216

Query: 115 AGFI 118
             +I
Sbjct: 217 QNYI 220

Length = 232

>gnl|CDD|237835 PRK14850, PRK14850, penicillin-binding protein 1b; Provisional

 Score = 79.5 bits (196), Expect = 4e-18
 Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIE 60
           T QLVKN FL N R++ RKI E+ +AL L+R  SK  IL  Y++++Y G      I G  
Sbjct: 213 TQQLVKNLFLTNTRSLWRKINEIYMALILDRFYSKDRILELYLNEVYLGQDGNEQIRGFP 272

Query: 61  SASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDI 120
            ASI+YFG+  + L++ + A+L GM+    L +P  + +     +  VL  + +   I  
Sbjct: 273 LASIYYFGRPINELNLDQYALLVGMVKGASLYNPWTNPNLTLKRRNLVLFLLYKQKVITR 332

Query: 121 ETALWVLKQPLDLRDDG 137
           +    +  +PL+++  G
Sbjct: 333 KLYKDLCSRPLNVQSKG 349

Length = 764

>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase; Reviewed

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 8/123 (6%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIE 60
           T QLVKN FL NER++ RK  E  +AL ++   SK  IL  Y++++Y G      I G  
Sbjct: 267 TQQLVKNLFLSNERSLWRKANEAYMALIMDARYSKDRILELYLNEVYLGQSGDDQIRGFP 326

Query: 61  SASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQAR--VLKRMVEAGFI 118
            AS++YFG+    LS+ + A+L GM+    L +P ++       + R  VL+ + +   I
Sbjct: 327 LASLYYFGRPVEELSLDQQALLVGMVKGASLYNPWRNPK--LALERRNLVLRLLQQQQII 384

Query: 119 DIE 121
           D E
Sbjct: 385 DQE 387

Length = 830

>gnl|CDD|183049 PRK11240, PRK11240, penicillin-binding protein 1C; Provisional

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 41/99 (41%), Positives = 59/99 (59%)

Query: 18  RTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMA 77
           RT   KI ++  AL LE  +SK EIL+ Y+++  +G  + GI +AS  Y GK P+ LS A
Sbjct: 130 RTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLSYA 189

Query: 78  EAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAG 116
           EAA+LA +  AP    P +   R +  + +VL+RM E G
Sbjct: 190 EAALLAVLPQAPSRLRPDRWPERAEAARNKVLERMAEQG 228

Length = 772

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
PRK11636	850	mrcA penicillin-binding protein 1a; Provisional	100.0
COG5009	797	MrcA Membrane carboxypeptidase/penicillin-binding	100.0
PRK13481	232	glycosyltransferase; Provisional	100.0
PRK14850	764	penicillin-binding protein 1b; Provisional	100.0
TIGR02071	730	PBP_1b penicillin-binding protein 1B. Bacterial th	100.0
PRK09506	830	mrcB bifunctional glycosyl transferase/transpeptid	100.0
TIGR02073	727	PBP_1c penicillin-binding protein 1C. This subfami	100.0
TIGR02074	530	PBP_1a_fam penicillin-binding protein, 1A family.	100.0
PRK11240	772	penicillin-binding protein 1C; Provisional	100.0
TIGR02070	224	mono_pep_trsgly monofunctional biosynthetic peptid	100.0
COG0744	661	MrcB Membrane carboxypeptidase (penicillin-binding	100.0
PRK00056	236	mtgA monofunctional biosynthetic peptidoglycan tra	100.0
PF00912	178	Transgly: Transglycosylase; InterPro: IPR001264 Th	100.0
COG4953	733	PbpC Membrane carboxypeptidase/penicillin-binding	100.0
PF09851	31	SHOCT: Short C-terminal domain; InterPro: IPR01864	90.23
cd08324	85	CARD_NOD1_CARD4 Caspase activation and recruitment	80.18

>PRK11636 mrcA penicillin-binding protein 1a; Provisional

Probab=100.00  E-value=1.2e-50  Score=377.49  Aligned_cols=148  Identities=33%  Similarity=0.471  Sum_probs=142.0

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||+|++++||+.||++|+++|++||++||||||||+|||.||||+|+|||++||++||||++++||++|||+
T Consensus       119 STITQQlaKn~~l~~ert~~RKikE~~lA~~lE~~~SKdeILe~YLN~IyfG~gayGV~aAA~~YFgK~~~~LtlaEaA~  198 (850)
T PRK11636        119 STITQQLARNFFLSPERTLMRKIKEAFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLSEMAV  198 (850)
T ss_pred             CcHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCcHhHHHHHHHHhCCChHHCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC-------CchhhHHHHHHHhh
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD-------DGKKYADRLLYLLS  149 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~-------~~~~~~d~~~~~~~  149 (152)
                      |||||++|+.|||++||+++++||+.||++|++.|+||++|+++|..+|+.+..       ..|+|+|.|.++|.
T Consensus       199 LAgl~kaPs~y~P~~npe~a~~Rr~~VL~~M~~~G~It~~e~~~a~~~pl~~~~~~~~~~~~~~y~~~~V~~~l~  273 (850)
T PRK11636        199 IAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQAQYDQARSEPIVANYHAPEIAFSAPYLSEMVRQEMY  273 (850)
T ss_pred             HhccCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCcccccccCccccccchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987542       35889999988763

>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=9.1e-51  Score=368.91  Aligned_cols=147  Identities=41%  Similarity=0.554  Sum_probs=142.1

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||+|++++||+.||++|++||++||+.+||+||||+|||.+|||.|.|||.+||+.||||++.+||++|+|+
T Consensus       120 STITQQvAkNf~Ltsertl~RKikEa~LA~~IE~~lsKdeILELYLNkIylG~~aYGvaAAAq~YFgKsV~eLtlaE~A~  199 (797)
T COG5009         120 STITQQVAKNFFLSSERTLERKIKEALLAIRIEQSLSKDEILELYLNKIYLGYRAYGVAAAAQTYFGKSVNELTLAEAAM  199 (797)
T ss_pred             cHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhhcCcchhHHHHHHHHhCCChhhccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC-------CchhhHHHHHHHh
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD-------DGKKYADRLLYLL  148 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~-------~~~~~~d~~~~~~  148 (152)
                      ||+||++|+.|||+.||+++++|||+||++|.++|+||++|+++|..+|+....       .+|.|++.|.+||
T Consensus       200 lA~LPKaPs~ynP~~~p~RA~~RRn~VL~rM~e~gyIt~~~~~~A~~epl~~~~~~~~~~~~A~YfaE~VRqe~  273 (797)
T COG5009         200 LAGLPKAPSNYNPLYNPERAKERRNYVLNRMLEEGYITQEQADEAKAEPLVAKYHGPEIAFSAPYFAEMVRQEM  273 (797)
T ss_pred             HhhcCCCccccCCccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCcccccccccchhccChHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998763       4578888888776

>PRK13481 glycosyltransferase; Provisional

Probab=100.00  E-value=3.1e-50  Score=326.92  Aligned_cols=128  Identities=31%  Similarity=0.442  Sum_probs=125.3

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCC-------CCC
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHP-------SLL   74 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~-------~~L   74 (152)
                      ||||||+|||++++++||+.||++|+++|++||+.|||+||||+|||.+|||+|+|||++||++||||++       ++|
T Consensus        97 STITQQlaKn~~l~~~rt~~RK~~E~~~A~~lE~~~SK~eILe~YLN~v~~G~g~yGi~aAA~~YFgK~~~~~~~~~~~L  176 (232)
T PRK13481         97 STITQQVVKNYFYDNERSFTRKVKELFVAHRVEKQYSKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHI  176 (232)
T ss_pred             CcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHcccCCchHHHHHHHHHHcCCCccccccCcccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998       599


Q ss_pred             CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcC
Q 047499           75 SMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQ  129 (152)
Q Consensus        75 t~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~  129 (152)
                      |++|||+|||+||+|+.|+|.++++.+++||+.||++|++.|+||++|++.|..+
T Consensus       177 tl~EaA~LA~l~~~P~~y~P~~~~~~a~~R~~~VL~~M~~~g~It~~q~~~a~~~  231 (232)
T PRK13481        177 TVLQSAILASKVNAPSVYNINDMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQ  231 (232)
T ss_pred             CHHHHHHHhhhcCCCccCCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999998753

>PRK14850 penicillin-binding protein 1b; Provisional

Probab=100.00  E-value=1e-49  Score=367.72  Aligned_cols=148  Identities=30%  Similarity=0.415  Sum_probs=142.4

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCc----chhHHHHHHHhhCCCCCCCCHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIESASIFYFGKHPSLLSMA   77 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~----~~Gv~aAA~~yFgk~~~~Lt~~   77 (152)
                      ||||||||||+|++++||+.||++|+++|++||++||||||||+|||.||||+|    +|||++||++||||++++||++
T Consensus       210 STITQQlvKn~~l~~erT~~RK~~E~~lAl~LE~~ysKdeILe~YLN~vy~G~~~~~~i~Gv~aAs~~YFgk~~~eLtl~  289 (764)
T PRK14850        210 STLTQQLVKNLFLTNTRSLWRKINEIYMALILDRFYSKDRILELYLNEVYLGQDGNEQIRGFPLASIYYFGRPINELNLD  289 (764)
T ss_pred             cHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCCCCcceecHHHHHHHHcCCChHHCCHH
Confidence            999999999999999999999999999999999999999999999999999997    8999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC------CchhhHHHHHHHhh
Q 047499           78 EAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD------DGKKYADRLLYLLS  149 (152)
Q Consensus        78 EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~------~~~~~~d~~~~~~~  149 (152)
                      |+|+||||+++|+.|||++||+++++||+.||++|+++|+||++|++.|..+|+.+..      ..|+|.|.|.+|+.
T Consensus       290 EaAlLagl~k~Ps~ynP~~~pe~a~~Rrn~VL~~M~~~g~It~~e~~~a~~~pl~~~~~~~~~~~~p~f~~~v~~el~  367 (764)
T PRK14850        290 QYALLVGMVKGASLYNPWTNPNLTLKRRNLVLFLLYKQKVITRKLYKDLCSRPLNVQSKGNIISSHPAFIQLVCEEFH  367 (764)
T ss_pred             HHHHHhhhcCCccccCCccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhccccccccccccccchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999997642      46899999998874

>TIGR02071 PBP_1b penicillin-binding protein 1B

Probab=100.00  E-value=1.2e-49  Score=366.18  Aligned_cols=148  Identities=33%  Similarity=0.459  Sum_probs=142.5

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCc----chhHHHHHHHhhCCCCCCCCHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIESASIFYFGKHPSLLSMA   77 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~----~~Gv~aAA~~yFgk~~~~Lt~~   77 (152)
                      ||||||||||+|++++||+.||++|+++|++||++||||||||+|||.||||+|    +|||++||++||||++++||++
T Consensus       200 STiTQQlvKn~~l~~ert~~RK~~E~~lA~~lE~~~sKdeILe~YLN~vy~G~~g~~~~~Gi~~Aa~~YFgk~~~~Ltl~  279 (730)
T TIGR02071       200 STLTQQLVKNLFLSNERSLWRKANEAYMALILDARYSKDRILELYLNEVYLGQSGDDAIHGFPLASQYYFGRPLGELSLD  279 (730)
T ss_pred             cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCCCCCCEeeHHHHHHHHhCCChhhCCHH
Confidence            999999999999999999999999999999999999999999999999999985    9999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC------CchhhHHHHHHHhh
Q 047499           78 EAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD------DGKKYADRLLYLLS  149 (152)
Q Consensus        78 EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~------~~~~~~d~~~~~~~  149 (152)
                      |+|+||||+++|+.|||++||+++++|||.||++|+++|+||++|++.|..+|+.+..      ..|+|.|.|.+||.
T Consensus       280 E~A~Lagl~k~Ps~y~P~~~pe~a~~Rrn~VL~~M~~~g~It~~e~~~a~~~pl~~~~~~~~~~~~p~~~~~v~~~l~  357 (730)
T TIGR02071       280 QVALLVGMVKGPSYYNPWRNPDRALERRNLVLRLLQEQKIIDDEEYDMLSARPLGVQKKGGIISRQPAFLQLVRRELR  357 (730)
T ss_pred             HHHHHHhhcCCccccCCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCcccCcCccccccchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999997643      46899999998874

Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B.

>PRK09506 mrcB bifunctional glycosyl transferase/transpeptidase; Reviewed

Probab=100.00  E-value=2.1e-49  Score=367.97  Aligned_cols=148  Identities=31%  Similarity=0.441  Sum_probs=142.2

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCc----chhHHHHHHHhhCCCCCCCCHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIESASIFYFGKHPSLLSMA   77 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~----~~Gv~aAA~~yFgk~~~~Lt~~   77 (152)
                      ||||||||||+|++++||+.||++|+++|+.||.+|||+||||+|||.||||+|    +|||++||++||||++++||++
T Consensus       264 STITQQLvKn~~l~~erTl~RK~~E~~lAl~LE~~ysKdeILe~YLN~vy~G~~g~~~~~Gi~aAs~~YFgk~~~eLtl~  343 (830)
T PRK09506        264 STLTQQLVKNLFLSNERSLWRKANEAYMALIMDARYSKDRILELYLNEVYLGQSGDDQIRGFPLASLYYFGRPVEELSLD  343 (830)
T ss_pred             chHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCCCCcCeecHHHHHHHHcCCChHHCCHH
Confidence            999999999999999999999999999999999999999999999999999986    9999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC------CchhhHHHHHHHhh
Q 047499           78 EAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD------DGKKYADRLLYLLS  149 (152)
Q Consensus        78 EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~------~~~~~~d~~~~~~~  149 (152)
                      |+|+||||+++|+.|||++||+++++|||.||+.|+++|+||++|++.|..+|+.+..      ..|+|.|.|.+||.
T Consensus       344 E~AlLagl~k~Ps~YnP~~~pe~a~~Rrn~VL~~M~~~g~It~~e~~~a~~~pl~~~~~~~~~~~~p~f~~~v~~el~  421 (830)
T PRK09506        344 QQALLVGMVKGASLYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPKGGVISPQPAFMQMVRQELQ  421 (830)
T ss_pred             HHHHHhhhcCCCccCCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhCccccCcCccccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999997643      35899999998874

>TIGR02073 PBP_1c penicillin-binding protein 1C

Probab=100.00  E-value=3.4e-49  Score=362.98  Aligned_cols=147  Identities=35%  Similarity=0.414  Sum_probs=141.0

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||++++++||+.||++|+++|++||++|||+||||+|||.+|||+|+|||++||+.||||++++||++|||+
T Consensus        86 STITqQlak~~~~~~~rt~~rK~~E~~~A~~lE~~~sK~eILe~YLN~i~~G~~~~Gv~aAs~~YFgK~~~~Ltl~EaA~  165 (727)
T TIGR02073        86 STLTMQLARLLDPELSRTLTGKLRQMWRAIQLEARYSKREILEAYLNLAPYGGNLEGLRAASLIYFGKEPSSLSLAEAAL  165 (727)
T ss_pred             chHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCccHHHHHHHHHHcCCChHHCCHHHHhH
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCC-----CCchhhHHHHHHHh
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLR-----DDGKKYADRLLYLL  148 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~-----~~~~~~~d~~~~~~  148 (152)
                      |||||++|+.|+|.+||+++++||+.||++|++.|+||++|++.|..+|+...     ...|+|++.++.++
T Consensus       166 LA~l~~~P~~y~P~~~~~~a~~rr~~VL~~M~~~g~it~~e~~~a~~~p~~~~~~~~~~~a~~~~~~v~~~~  237 (727)
T TIGR02073       166 LAALPQAPSARRLDRLPKAAKAARDRLLDRMVEQGPDDSEQVALAALEPLPALPEPLPQLAPHFALKLLRAR  237 (727)
T ss_pred             HeeccCCcccCCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhCccccccccCccchHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998653     24689999888765

This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.

>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family

Probab=100.00  E-value=1.8e-48  Score=347.46  Aligned_cols=148  Identities=45%  Similarity=0.647  Sum_probs=142.5

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||++++++||+.||++|+++|.+||++|||+||||+|||.+|||+|+|||++||++||||++++||++|||+
T Consensus        55 STitqQ~~k~~~~~~~~t~~rK~~E~~~a~~le~~~sK~~Il~~YlN~~~~g~~~~Gv~~Aa~~yF~k~~~~L~~~e~a~  134 (530)
T TIGR02074        55 STITQQLAKNLYLTNERTITRKIQEALLALKLEQKLSKDEILELYLNRIYFGNGAYGIEAAAQFYFGKSVNDLTLAEAAM  134 (530)
T ss_pred             CcHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCccHHHHHHHHHHcCCChhHCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC--------CchhhHHHHHHHhh
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD--------DGKKYADRLLYLLS  149 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~--------~~~~~~d~~~~~~~  149 (152)
                      ||||+++|+.|+|..+++++.+||+.||++|++.|+||++|++.|..+|+....        ..|+|.|.|.+|+.
T Consensus       135 La~~~~~P~~~~p~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~v~~el~  210 (530)
T TIGR02074       135 LAGLPKAPSAYNPFVNPERAKDRRNLVLSNMVENGYITAEEAEEAINEPIQLYLQTKTAEEYKYPYFVDYVIQELE  210 (530)
T ss_pred             HHhhccCccccCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhCCcccccccccccCccchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997532        46899999998873

Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.

>PRK11240 penicillin-binding protein 1C; Provisional

Probab=100.00  E-value=1.3e-47  Score=354.38  Aligned_cols=144  Identities=33%  Similarity=0.370  Sum_probs=135.3

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||++ ..+||+.||++|+++|++||++||||||||+|||.+|||+|+|||++||+.||||++++||++|||+
T Consensus       115 STITqQlar~~~-~~~rt~~rK~~E~~lA~~lE~~~sK~eILe~YLN~i~fG~~~~Gv~aAa~~YFgK~~~~LtlaEaA~  193 (772)
T PRK11240        115 STLTMQVARLLD-PHPRTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLSYAEAAL  193 (772)
T ss_pred             chHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCchHHHHHHHHHHcCCChhHCCHHHHHH
Confidence            999999999865 5789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC-----CchhhHHHHHH
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD-----DGKKYADRLLY  146 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~-----~~~~~~d~~~~  146 (152)
                      ||||+++|+.|+|.+||+++++||+.||++|++.|+||++|++.|..+|+....     ..|++++.+..
T Consensus       194 LA~lp~aPs~y~P~~~~~~a~~rr~~VL~~M~~~g~it~~e~~~a~~~~~~~~~~~~~~~a~~~~~~~~~  263 (772)
T PRK11240        194 LAVLPQAPSRLRPDRWPERAEAARNKVLERMAEQGVWSAEQVKESREEPVWLAPRQMPQLAPLFARMMLG  263 (772)
T ss_pred             HhccCCCcccCCCcCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCcccccccCCccchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987542     34677776654

>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase

Probab=100.00  E-value=1.1e-46  Score=304.94  Aligned_cols=116  Identities=32%  Similarity=0.451  Sum_probs=114.7

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||+|||+|++++||+.||++|+++|++||..|||+||||.|||.++||+|+|||++||++||||++++||.+|||+
T Consensus       108 STITQQlaKnl~l~~~rs~~RK~~E~~lA~~lE~~~sK~~ILe~YLN~v~~G~g~yGv~aAa~~yFgk~~~~Lt~~EaA~  187 (224)
T TIGR02070       108 STISQQLAKNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGVFGAEAAARYYFKRSASNLTRGQAAR  187 (224)
T ss_pred             chHHHHHHHHHccCCCCcHhHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCCcHHHHHHHHHHcCCChHHCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGF  117 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~  117 (152)
                      |||++++|+.|+|.++++.+++|++.||++|.+.|.
T Consensus       188 LA~ll~~P~~y~p~~~~~~~~~R~~~vl~~M~~~g~  223 (224)
T TIGR02070       188 LAAVLPNPKYYDENRPGPYVRRKATWILKQMGYLGL  223 (224)
T ss_pred             HHhhcCCccccCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999885

This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by pfam model pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan).

>COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.3e-46  Score=341.33  Aligned_cols=148  Identities=42%  Similarity=0.620  Sum_probs=141.6

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||+|+++++|+.||++|+++|++||..|||+||||+|||.||||+|.|||++||++||||++++||++|+|+
T Consensus       130 STITQQl~KN~fL~~~~t~~RK~~E~~lA~~LE~~~sKdeILe~YLN~vy~G~g~~Gv~aAA~~yFgk~a~~Ltl~qaA~  209 (661)
T COG0744         130 STITQQLAKNLFLSNERTLDRKAKEAVLALWLEALYSKDEILEMYLNQVYFGRGAYGVEAAAQYYFGKPAKDLTLAQAAL  209 (661)
T ss_pred             cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhcccCCCchHHHHHHHHHhCCChHHCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCC-------CCchhhHHHHHHHhh
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLR-------DDGKKYADRLLYLLS  149 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~-------~~~~~~~d~~~~~~~  149 (152)
                      ||||+|+|+.|+|.++++.+++|++.||++|++.|+||++|+++|+.+|+.+.       ...+.|.+.|..|++
T Consensus       210 Lag~~~~Ps~y~p~~~~~~a~~R~~~VL~~M~~~g~It~~~~~~A~~~~l~~~~~~~~~~~~~~~~~~~v~~el~  284 (661)
T COG0744         210 LAGLLKAPSLYNPYRPPEYARARRNLVLRRMVEQGYITAEEYDAALAEPLQVQQAKTVATSPPPYFDDVVRQELA  284 (661)
T ss_pred             HhccCCCccccCCCCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHhccCCcccccccccccCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999984       234777787777765

>PRK00056 mtgA monofunctional biosynthetic peptidoglycan transglycosylase; Provisional

Probab=100.00  E-value=1.6e-46  Score=306.33  Aligned_cols=118  Identities=35%  Similarity=0.467  Sum_probs=116.2

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||+|||++++++||+.||++|+++|++||..|||+||||.|||.++||+|+|||++||++||||++++||.+|||+
T Consensus       113 STITQQlaKnl~l~~~rs~~RK~~E~~lA~~lE~~~sK~~ILe~YLN~v~~G~g~yGi~aAa~~YFgk~~~~Ls~~EaA~  192 (236)
T PRK00056        113 STISQQTAKNLFLWPGRSWVRKGLEAPLTLMIELVWSKRRILEVYLNIAEWGPGIFGAEAAARHYFGKPASKLSASQAAL  192 (236)
T ss_pred             CcHHHHHHHHHcccCCCcHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCchHHHHHHHHHcCCChhhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCC
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFID  119 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it  119 (152)
                      |||++++|+.|+|.++++.+++|++.||++|.+.|..+
T Consensus       193 La~ll~~P~~y~p~~~~~~~~~R~~~Vl~~M~~~g~~~  230 (236)
T PRK00056        193 LAAVLPNPRRYDAHRPSPYVRRRAAWILRQMRQLGGPE  230 (236)
T ss_pred             HHhhcCCccccCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999999999999999999999854

>PF00912 Transgly: Transglycosylase; InterPro: IPR001264 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=100.00  E-value=5.8e-46  Score=292.10  Aligned_cols=112  Identities=55%  Similarity=0.836  Sum_probs=109.0

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||+++++++|+.||++|+++|.+||+.|||+||||+|||.+|||+|+|||++||++||||++++||++|+|+
T Consensus        67 STItqQlak~~~~~~~~t~~rK~~E~~~A~~le~~~sK~~ILe~YLN~i~~G~~~~Gv~aAs~~yF~k~~~~Ls~~eaa~  146 (178)
T PF00912_consen   67 STITQQLAKNLFLSNERTLRRKLREAILALRLERRYSKDEILELYLNSIYFGNGIYGVEAASRYYFGKSPSDLSLAEAAL  146 (178)
T ss_dssp             SHHHHHHHHHHTTSSSSSHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCSBESTTBBSHHHHHHHHHSSSCGG--HHHHHH
T ss_pred             eeHHHHHHHHHHccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhHcccccchHHHHHHHHhCCCHHHCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMV  113 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~  113 (152)
                      ||+++++|+.|+|.++|+.+++||++||++|+
T Consensus       147 La~l~~~P~~y~p~~~~~~~~~r~~~vL~~M~  178 (178)
T PF00912_consen  147 LAGLLPNPSRYNPYRNPERAKERRNRVLDRMV  178 (178)
T ss_dssp             HHHCTTSTTTSBTTTSHHHHHHHHHHHHHHHH
T ss_pred             HhhhccCccccCCCCCHHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999996

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 51 GT51 from CAZY comprises enzymes with only one known activity; murein polymerases (2.4 from EC). These enzymes utilise MurNAc-GlcNAc-P-P-lipid II as the sugar donor. The family includes the bifunctional penicillin-binding proteins that have a transglycosylase (N terminus) and transpeptidase (C terminus) domain [] and the monofunctional biosynthetic peptidoglycan transglycosylases [].; GO: 0003824 catalytic activity, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall; PDB: 3VMT_A 3VMS_B 3VMQ_A 3VMR_A 3D3H_A 3NB7_A 3NB6_A 2OQO_A 2V2F_A 3HZS_A ....

>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.6e-39  Score=292.61  Aligned_cols=146  Identities=34%  Similarity=0.422  Sum_probs=138.2

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||+||.+.. .+||+..|++|++.|++||.++||+|||+.|||.+|||+|++||++||..||||++++||.+|+|+
T Consensus       111 STlTMQvARlleP-~~Rtl~gK~~qi~rAiqLE~~lSK~EIL~lYLn~aPyGgNieGv~AAS~aYFgk~~~~Ls~aEAal  189 (733)
T COG4953         111 STLTMQVARLLEP-RPRTLGGKIRQIWRAIQLESRLSKREILELYLNRAPYGGNIEGVRAASLAYFGKEPKRLSLAEAAL  189 (733)
T ss_pred             chHHHHHHHHhCc-CCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCchHHHHHHHHHHhCCChhhcCHHHHHH
Confidence            9999999998764 559999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCC-----CCchhhHHHHHHHh
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLR-----DDGKKYADRLLYLL  148 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~-----~~~~~~~d~~~~~~  148 (152)
                      ||++||+|++.+|.++++++.++|++||++|+..|+++++++..+..+|+..+     ..+|||+++++.|-
T Consensus       190 LavLPq~P~~~rpdr~~~~a~~AR~~vL~rm~~~g~~~~~~~~~a~le~v~~~~~~~p~~APhfa~~l~~~~  261 (733)
T COG4953         190 LAVLPQNPERRRPDRNPEAAEAARNRVLTRMAVQGVWSEEEAKRARLEPVPNRRRQLPFLAPHFAFRLLNQY  261 (733)
T ss_pred             HHhccCChhhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhccccccchhhcccccHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999988653     46799998887754

>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function

Probab=90.23  E-value=0.44  Score=27.09  Aligned_cols=23  Identities=22%  Similarity=0.078  Sum_probs=19.8

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHhc
Q 047499          106 ARVLKRMVEAGFIDIETALWVLK  128 (152)
Q Consensus       106 ~~vL~~m~~~g~it~~~~~~a~~  128 (152)
                      -..|+.|++.|.||++|+.....
T Consensus         5 L~~L~~l~~~G~IseeEy~~~k~   27 (31)
T PF09851_consen    5 LEKLKELYDKGEISEEEYEQKKA   27 (31)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHH
Confidence            35799999999999999998754

>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1

Probab=80.18  E-value=2.7  Score=29.59  Aligned_cols=36  Identities=14%  Similarity=0.125  Sum_probs=26.9

Q ss_pred             CcHHHHHHHH---HHHHHHHHcCCCCHHHHHHHhcCCCC
Q 047499           97 DCSRGKTFQA---RVLKRMVEAGFIDIETALWVLKQPLD  132 (152)
Q Consensus        97 ~~~~~~~r~~---~vL~~m~~~g~it~~~~~~a~~~p~~  132 (152)
                      |.+....|..   -+|++|..+|+|++++++...+.|=+
T Consensus         6 hRe~LV~rI~~v~plLD~Ll~n~~it~E~y~~V~a~~T~   44 (85)
T cd08324           6 NRELLVTHIRNTQCLVDNLLKNDYFSTEDAEIVCACPTQ   44 (85)
T ss_pred             HHHHHHHHHHhhHHHHHHHhccCCccHHHHHHHHhCCCC
Confidence            3344444433   38999999999999999998777644

Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	152
2oqo_A	200	Crystal Structure Of A Peptidoglycan Glycosyltransf		1e-15
3nb6_A	200	Crystal Structure Of Aquifex Aeolicus Peptidoglycan		1e-15
3udf_A	731	Crystal Structure Of Apo Pbp1a From Acinetobacter B		6e-15
3hzs_A	209	S. Aureus Monofunctional Glycosyltransferase (Mtga)		1e-10
3vmq_A	263	Crystal Structure Of Staphylococcus Aureus Membrane		2e-10
3dwk_A	625	Identification Of Dynamic Structural Motifs Involve		2e-09
2olu_A	669	Structural Insight Into The Transglycosylation Step		2e-09
3vma_A	768	Crystal Structure Of The Full-Length Transglycosyla		2e-07
3fwl_A	751	Crystal Structure Of The Full-Length Transglycosyla		2e-06
2je5_A	720	Structural And Mechanistic Basis Of Penicillin Bind		2e-05

>pdb|2OQO|A Chain A, Crystal Structure Of A Peptidoglycan Glycosyltransferase From A Class A Pbp: Insight Into Bacterial Cell Wall Synthesis Length = 200

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 64/117 (54%)
Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL KN FL  ERT+ RKI E +LA+ +ER   K +I+  Y+++IY G G YG+E+A+ 
Sbjct: 76  TQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQ 135
Query: 65  FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIE 121
            YFGKH              +  AP   +P     R    +  VLKRM+E G+I  E
Sbjct: 136 VYFGKHVWELSLDEAALLAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPE 192

>pdb|3NB6|A Chain A, Crystal Structure Of Aquifex Aeolicus Peptidoglycan Glycosyltransferase In Complex With Methylphosphoryl Neryl Moenomycin Length = 200

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 64/117 (54%)
Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL KN FL  ERT+ RKI E +LA+ +ER   K +I+  Y+++IY G G YG+E+A+ 
Sbjct: 76  TQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQ 135
Query: 65  FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIE 121
            YFGKH              +  AP   +P     R    +  VLKRM+E G+I  E
Sbjct: 136 VYFGKHVWELSLDEAALLAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPE 192

>pdb|3UDF|A Chain A, Crystal Structure Of Apo Pbp1a From Acinetobacter Baumannii Length = 731

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 69/130 (53%)
Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+ KN +L  ERT+ RKI E+ LA  +E+ +SK +ILS YV+KI+ G   YGI +A+ 
Sbjct: 95  TMQVAKNYYLSPERTLKRKITEIFLARKIEQNLSKEDILSLYVNKIFLGKNAYGIAAAAK 154
Query: 65  FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            Y+ K              G+  AP   +P+ +  R    +  +L RM++ G+I      
Sbjct: 155 IYYNKSINELSIAQMAMIAGLPKAPSKYNPVVNPERALERRNWILGRMLQLGYISQAEYQ 214
Query: 125 WVLKQPLDLR 134
             + +P++L 
Sbjct: 215 KAVAEPINLN 224

>pdb|3HZS|A Chain A, S. Aureus Monofunctional Glycosyltransferase (Mtga)in Complex With Moenomycin Length = 209

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+VKN F  N+R+ +RK+ E+ +A  +E+  +K EILS Y++ IY+G   Y +E A+ 
Sbjct: 76  TQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAAN 135
Query: 65  FYFG 68
            YFG
Sbjct: 136 HYFG 139

>pdb|3VMQ|A Chain A, Crystal Structure Of Staphylococcus Aureus Membrane-Bound Transglycosylase: Apoenzyme Length = 263

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+VKN F  N+R+ +RK+ E+ +A  +E+  +K EILS Y++ IY+G   Y +E A+ 
Sbjct: 129 TQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAAN 188
Query: 65  FYFG 68
            YFG
Sbjct: 189 HYFG 192

>pdb|3DWK|A Chain A, Identification Of Dynamic Structural Motifs Involved In Peptidoglycan Glycosyltransfer Length = 625

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+VK+ FL   ++I RK  E  L+  LE+  SK +I   Y++KIY+  G+ GI++A+ 
Sbjct: 83  TQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAK 142
Query: 65  FYFGK 69
           +YF K
Sbjct: 143 YYFNK 147

>pdb|2OLU|A Chain A, Structural Insight Into The Transglycosylation Step Of Bacterial Cell Wall Biosynthesis : Apoenzyme Length = 669

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+VK+ FL   ++I RK  E  L+  LE+  SK +I   Y++KIY+  G+ GI++A+ 
Sbjct: 92  TQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAK 151
Query: 65  FYFGK 69
           +YF K
Sbjct: 152 YYFNK 156

>pdb|3VMA|A Chain A, Crystal Structure Of The Full-Length Transglycosylase Pbp1b From Escherichia Coli Length = 768

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIE 60
           T QLVKN FL +ER+  RK  E  +AL ++   SK  IL  Y++++Y G      I G  
Sbjct: 233 TQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFP 292
Query: 61  SASIFYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKD 97
            AS++YFG+              GM+    + +P ++
Sbjct: 293 LASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRN 329

>pdb|3FWL|A Chain A, Crystal Structure Of The Full-Length Transglycosylase Pbp1b From Escherichia Coli Length = 751

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIE 60
           T QLVKN FL +ER+  RK  E   AL  +   SK  IL  Y +++Y G      I G  
Sbjct: 216 TQQLVKNLFLSSERSYWRKANEAYXALIXDARYSKDRILELYXNEVYLGQSGDNEIRGFP 275
Query: 61  SASIFYFGK 69
            AS++YFG+
Sbjct: 276 LASLYYFGR 284

>pdb|2JE5|A Chain A, Structural And Mechanistic Basis Of Penicillin Binding Protein Inhibition By Lactivicins Length = 720

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 7   QLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYW-----GHGIYGIES 61
           QL+K   + +  T++RK  E+V ALALERA++K EIL++Y++   +     G  I G   
Sbjct: 112 QLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGARQ 171
Query: 62  ASIFYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKT 103
           A+   FG               G+  +P   SP ++    K+
Sbjct: 172 AAEGIFGVDASQLTVPQAAFLAGLPQSPITYSPYENTGELKS 213
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
2olv_A	669	Penicillin-binding protein 2; transpeptidase fold,	7e-50
3fwm_A	751	Penicillin-binding protein 1B; bacterial cell WALL	2e-48
2oqo_A	200	Penicillin-binding protein 1A (PBP-1A) (PBP1A); tr	4e-47
3udf_A	731	Penicillin-binding protein 1A; transglycosylase, t	4e-46
2jch_A	720	Penicillin-binding protein 1B; peptidoglycan synth	1e-45
3hzs_A	209	Monofunctional glycosyltransferase; transglycosyla	2e-45
3vmt_A	263	Monofunctional glycosyltransferase; transmembrane,	4e-44

>2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme transferase; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A* Length = 669

 Score =  168 bits (427), Expect = 7e-50
 Identities = 42/139 (30%), Positives = 67/139 (48%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+VK+ FL   ++I RK  E  L+  LE+  SK +I   Y++KIY+  G+ GI++A+ 
Sbjct: 92  TQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAK 151

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
           +YF K    L++AE A LAG+   P+  +        +  +  VL  M     I  +   
Sbjct: 152 YYFNKDLKDLNLAEEAYLAGLPQVPNNYNIYDHPKAAEDRKNTVLYLMHYHKRITDKQWE 211

Query: 125 WVLKQPLDLRDDGKKYADR 143
              K  L      +   +R
Sbjct: 212 DAKKIDLKANLVNRTPEER 230

>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET: EPE CPS; 2.10A {Aquifex aeolicus} SCOP: d.2.1.10 PDB: 3d3h_A* 3nb7_A 3nb6_A Length = 200

 Score =  150 bits (381), Expect = 4e-47
 Identities = 54/119 (45%), Positives = 73/119 (61%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T QL KN FL  ERT+ RKI E +LA+ +ER   K +I+  Y+++IY G G YG+E+A+ 
Sbjct: 76  TQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQ 135

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETA 123
            YFGKH   LS+ EAA+LA +  AP   +P     R    +  VLKRM+E G+I  E  
Sbjct: 136 VYFGKHVWELSLDEAALLAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPEQY 194

>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase; HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A* 3udx_A* 3ue0_A* 3ue1_A* Length = 731

 Score =  158 bits (402), Expect = 4e-46
 Identities = 50/142 (35%), Positives = 82/142 (57%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+ KN +L  ERT+ RKI E+ LA  +E+ +SK +ILS YV+KI+ G   YGI +A+ 
Sbjct: 95  TMQVAKNYYLSPERTLKRKITEIFLARKIEQNLSKEDILSLYVNKIFLGKNAYGIAAAAK 154

Query: 65  FYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
            Y+ K  + LS+A+ AM+AG+  AP   +P+ +  R    +  +L RM++ G+I      
Sbjct: 155 IYYNKSINELSIAQMAMIAGLPKAPSKYNPVVNPERALERRNWILGRMLQLGYISQAEYQ 214

Query: 125 WVLKQPLDLRDDGKKYADRLLY 146
             + +P++L    +   +   Y
Sbjct: 215 KAVAEPINLNMPNRDLNNIHPY 236

>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A* Length = 720

 Score =  157 bits (398), Expect = 1e-45
 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 14/156 (8%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYW-----GHGIYGI 59
           T QL+K   + +  T++RK  E+V ALALERA++K EIL++Y++   +     G  I G 
Sbjct: 110 TQQLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGA 169

Query: 60  ESASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTF---------QARVLK 110
             A+   FG   S L++ +AA LAG+  +P   SP ++    K+             VL 
Sbjct: 170 RQAAEGIFGVDASQLTVPQAAFLAGLPQSPITYSPYENTGELKSDEDLEIGLRRAKAVLY 229

Query: 111 RMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLY 146
            M   G +  +         L            +  
Sbjct: 230 SMYRTGALSKDEYSQYKDYDLKQDFLPSGTVTGISQ 265

>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} Length = 209

 Score =  146 bits (371), Expect = 2e-45
 Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 7/133 (5%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+VKN F  N+R+ +RK+ E+ +A  +E+  +K EILS Y++ IY+G   Y +E A+ 
Sbjct: 76  TQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAAN 135

Query: 65  FYFGKHPSL-------LSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGF 117
            YFG   +        +++ ++A+LA  + AP + +            +  L++M +  +
Sbjct: 136 HYFGTTVNKNSTTMSHITVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNY 195

Query: 118 IDIETALWVLKQP 130
           I+       + Q 
Sbjct: 196 INETQYQQAMSQL 208

>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A* Length = 263

 Score =  144 bits (366), Expect = 4e-44
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 5   TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
           T Q+VKN F  N+R+ +RK+ E+ +A  +E+  +K EILS Y++ IY+G   Y +E A+ 
Sbjct: 129 TQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAAN 188

Query: 65  FYFGKHPSL-------LSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGF 117
            YFG   +        +++ ++A+LA  + AP + +            +  L++M +  +
Sbjct: 189 HYFGTTVNKNSTTMSHITVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNY 248

Query: 118 IDIETALWVLKQPL 131
           I+       + Q  
Sbjct: 249 INETQYQQAMSQLN 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
2oqo_A	200	Penicillin-binding protein 1A (PBP-1A) (PBP1A); tr	100.0
3hzs_A	209	Monofunctional glycosyltransferase; transglycosyla	100.0
3vmt_A	263	Monofunctional glycosyltransferase; transmembrane,	100.0
3fwm_A	751	Penicillin-binding protein 1B; bacterial cell WALL	100.0
3udf_A	731	Penicillin-binding protein 1A; transglycosylase, t	100.0
2jch_A	720	Penicillin-binding protein 1B; peptidoglycan synth	100.0
2olv_A	669	Penicillin-binding protein 2; transpeptidase fold,	100.0
1qme_A	702	Penicillin-binding protein 2X; peptidoglycan synth	98.9
2y2m_A	494	PBP1B, penicillin-binding protein 1B; transferase,	98.27

>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET: EPE CPS; 2.10A {Aquifex aeolicus} SCOP: d.2.1.10 PDB: 3d3h_A* 3nb7_A 3nb6_A

Probab=100.00  E-value=1.5e-52  Score=333.60  Aligned_cols=127  Identities=43%  Similarity=0.606  Sum_probs=125.5

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||+++++++|+.||++|+++|++||+.|||+||||+|||.+|||+|+|||++||++||||++++||++|||+
T Consensus        73 STITqQlaKn~~l~~~rt~~RK~~E~~~A~~lE~~~sK~eILe~YLN~i~fG~g~yGi~aAa~~YFgk~~~~Lt~~EaA~  152 (200)
T 2oqo_A           73 STITQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQVYFGKHVWELSLDEAAL  152 (200)
T ss_dssp             CCHHHHHHHTTSSSCCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCBCSTTCBSHHHHHHHHHSSCGGGCCHHHHHH
T ss_pred             CHHHHHHHHHhccCccccHhHHHHHHHHHHHHHHHcCHHHHHHHHHhhccCCCcchHHHHHHHHHhCCChhhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhc
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLK  128 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~  128 (152)
                      ||||+++|+.|+|.+||+.+++||+.||++|++.|+||++|++.|..
T Consensus       153 La~l~~~P~~y~P~~~~~~a~~Rr~~VL~~M~~~g~It~~~~~~A~~  199 (200)
T 2oqo_A          153 LAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPEQYEEAVN  199 (200)
T ss_dssp             HHHSTTCHHHHCTTTCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHT
T ss_pred             HhccccCCccCCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999875

>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0

Probab=100.00  E-value=1.9e-51  Score=328.91  Aligned_cols=127  Identities=29%  Similarity=0.431  Sum_probs=124.8

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCC-------CCCC
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKH-------PSLL   74 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~-------~~~L   74 (152)
                      ||||||||||+|++++||+.||++|+++|++||+.|||+||||+|||.+|||+|+|||++||++||||+       +++|
T Consensus        73 STITQQlaKn~~l~~~rt~~RK~~E~~lA~~lE~~~sK~eILe~YLN~i~fG~g~yGi~aAa~~YFgk~~~~~~~~~~~L  152 (209)
T 3hzs_A           73 STITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHI  152 (209)
T ss_dssp             CCHHHHHHHHHBCCCCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTSSCCBTTBCSHHHHHHHHHSCBCCTTCSSSCBC
T ss_pred             chHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCcHHHHHHHHHHcCCCcccccCChhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998       5899


Q ss_pred             CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhc
Q 047499           75 SMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLK  128 (152)
Q Consensus        75 t~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~  128 (152)
                      |++|||+|||++++|+.|+|.++|+++++||+.||++|++.|+||++|++.|..
T Consensus       153 tl~EaA~LAgl~~~Ps~y~P~~~~~~a~~Rr~~VL~~M~~~g~It~~e~~~A~~  206 (209)
T 3hzs_A          153 TVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNYINETQYQQAMS  206 (209)
T ss_dssp             CHHHHHHHHHHTTSTTTCCSSSCCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             CHHHHHHHhhhccCccccCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999875

>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*

Probab=100.00  E-value=2e-50  Score=331.91  Aligned_cols=128  Identities=30%  Similarity=0.435  Sum_probs=125.5

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCC-------CCCC
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKH-------PSLL   74 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~-------~~~L   74 (152)
                      ||||||||||+|++++||+.||++|+++|++||+.|||+||||+|||.+|||+|+|||++||+.||||+       +++|
T Consensus       126 STITQQlaKn~~l~~~rt~~RK~~E~~lA~~lE~~~sK~eILe~YLN~iyfG~g~yGieaAA~~YFgK~~~~~n~~~~~L  205 (263)
T 3vmt_A          126 STITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHI  205 (263)
T ss_dssp             CCHHHHHHHHHHCSSCCCSHHHHHHHHHHHHHHHHSCHHHHHHHHHTSSCCSTTCCSHHHHHHHHHSCBCCTTCCSSCBC
T ss_pred             ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhccCCCcHHHHHHHHHHcCCCcccccCCcccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998       5899


Q ss_pred             CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcC
Q 047499           75 SMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQ  129 (152)
Q Consensus        75 t~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~  129 (152)
                      |++|||+|||++++|+.|+|.++++++++||+.||++|++.|+||++|++.|..+
T Consensus       206 tl~EaA~LAgl~~~Ps~y~P~~~~~~a~~Rr~~VL~~M~~~g~It~~e~~~A~~e  260 (263)
T 3vmt_A          206 TVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQ  260 (263)
T ss_dssp             CHHHHHHHHHHHHSCTTCCTTSCCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             CHHHHHHHhhhccCccccCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999764

>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase; HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A* 3udx_A* 3ue0_A* 3ue1_A*

Probab=100.00  E-value=2e-48  Score=356.80  Aligned_cols=148  Identities=34%  Similarity=0.480  Sum_probs=109.0

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||+|++++||+.||++|+++|++||++|||+||||+|||.+|||+|+|||++||++||||++++||++|+|+
T Consensus        92 STITqQl~kn~~l~~~~t~~rK~~E~~~A~~le~~~sK~~ILe~YLN~i~~G~~~~Gi~aAa~~yFgk~~~~L~~~eaA~  171 (731)
T 3udf_A           92 STITMQVAKNYYLSPERTLKRKITEIFLARKIEQNLSKEDILSLYVNKIFLGKNAYGIAAAAKIYYNKSINELSIAQMAM  171 (731)
T ss_dssp             ----------------------------------CHHHHHHHHHHTTTCBCSTTBBSHHHHHHHHHSCCGGGCCHHHHHH
T ss_pred             chHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhcccCCcchHHHHHHHHHhCCChhhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC-------CchhhHHHHHHHhh
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD-------DGKKYADRLLYLLS  149 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~-------~~~~~~d~~~~~~~  149 (152)
                      ||||+++|+.|+|++||+++++||+.||++|++.|+||++|++.|..+|+.+..       ..|+|.|.|.++|.
T Consensus       172 La~~~~~P~~y~p~~~~~~a~~rr~~vL~~m~~~g~It~~e~~~A~~~pl~~~~~~~~~~~~a~y~~~~vr~~l~  246 (731)
T 3udf_A          172 IAGLPKAPSKYNPVVNPERALERRNWILGRMLQLGYISQAEYQKAVAEPINLNMPNRDLNNIHPYAGEMVRSELV  246 (731)
T ss_dssp             HHTSTTCTTTSCTTTCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHSCCCCCCCCCEECCSSHHHHHHHHHHHH
T ss_pred             HhhhccCccccCCcCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCcccccCCCCcccCccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997642       46899999988764

>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A*

Probab=100.00  E-value=4e-47  Score=347.38  Aligned_cols=147  Identities=30%  Similarity=0.306  Sum_probs=7.9

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCc-----chhHHHHHHHhhCCCCCCCCH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG-----IYGIESASIFYFGKHPSLLSM   76 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~-----~~Gv~aAA~~yFgk~~~~Lt~   76 (152)
                      ||||||||||++++++||+.||++|+++|++||++||||||||+|||.+|||+|     +|||++||+.||||++++||+
T Consensus       107 STITQQlaKn~~l~~~~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~i~fG~~~~g~~~yGv~aAa~~YFgk~~~~Ltl  186 (720)
T 2jch_A          107 STLTQQLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGARQAAEGIFGVDASQLTV  186 (720)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             chHHHHHHHHhccCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHhhcccCCCCCccccHhHHHHHHHHhCCChhhCCH
Confidence            999999999999999999999999999999999999999999999999999985     699999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCc---------HHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC---------Cch
Q 047499           77 AEAAMLAGMIPAPDLRSPLKDC---------SRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD---------DGK  138 (152)
Q Consensus        77 ~EaA~La~l~~~P~~y~P~~~~---------~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~---------~~~  138 (152)
                      +|+|+||||+++|+.|||++||         +++++||+.||++|++.|+||++|++.|..+|+....         ..|
T Consensus       187 ~EaA~Lagl~~~Ps~y~P~~~~~~~~~~~~~~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~l~~~~~~~~~~~~~~~~  266 (720)
T 2jch_A          187 PQAAFLAGLPQSPITYSPYENTGELKSDEDLEIGLRRAKAVLYSMYRTGALSKDEYSQYKDYDLKQDFLPSGTVTGISQD  266 (720)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             HHHHHHhCcCCCCcccCCccChhhhhcchhhHHHHHHHHHHHHHHHHhccCCHHHHHHHHhCCccccccccccccccccc
Confidence            9999999999999999999876         4566999999999999999999999999999986431         346


Q ss_pred             hhHHHHHHHh
Q 047499          139 KYADRLLYLL  148 (152)
Q Consensus       139 ~~~d~~~~~~  148 (152)
                      .+.|.|..++
T Consensus       267 y~~~~v~~~~  276 (720)
T 2jch_A          267 YLYFTTLAEA  276 (720)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            7788777654

>2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme transferase; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A*

Probab=100.00  E-value=7.6e-44  Score=323.62  Aligned_cols=148  Identities=29%  Similarity=0.335  Sum_probs=139.4

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||+|+++++|+.||++|+++|++||.+|||+||||+|||.+|||+|+|||++||++||||++++||++|+|+
T Consensus        89 STiTqQl~k~~~l~~~~t~~rK~~E~~~a~~le~~~sK~~Ile~YlN~i~~g~~~~Gv~aAa~~yFgk~~~~Ltl~eaA~  168 (669)
T 2olv_A           89 STLTQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAKYYFNKDLKDLNLAEEAY  168 (669)
T ss_dssp             CCHHHHHHHTTTCCSCCTTTHHHHHHHHHHHHHHHSCHHHHHHHHHHHCBCSTTCBSHHHHHHHHHCCCSTTCCHHHHHH
T ss_pred             chHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhCCHHHHHHHhccccccCCCccCHHHHHHHHcCCChhHcCHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC-----------------CchhhHHHH
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD-----------------DGKKYADRL  144 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~-----------------~~~~~~d~~  144 (152)
                      ||||+++|+.|+|+++|+++++||+.||++|++.|+||++|++.|..+|+....                 ..++|.|.+
T Consensus       169 LAgl~~~P~~y~P~~~~~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~l~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~  248 (669)
T 2olv_A          169 LAGLPQVPNNYNIYDHPKAAEDRKNTVLYLMHYHKRITDKQWEDAKKIDLKANLVNRTPEERQNIDTNQDSEYNSYVNFV  248 (669)
T ss_dssp             HHHGGGSHHHHCTTTCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHTTSCTTTTCCCCCHHHHSCCCCCTTGGGHHHHHHH
T ss_pred             HhhhccCccccCcccCHHHHHHHHHHHHHhccccCcCCHHHHHHHHcCCcccccccccccccccccccCccccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875211                 346788888


Q ss_pred             HHHhh
Q 047499          145 LYLLS  149 (152)
Q Consensus       145 ~~~~~  149 (152)
                      +.++.
T Consensus       249 ~~~~~  253 (669)
T 2olv_A          249 KSELM  253 (669)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77763

>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*

Probab=98.90  E-value=1.5e-10  Score=104.95  Aligned_cols=76  Identities=22%  Similarity=0.306  Sum_probs=8.2

Q ss_pred             CCCHHHHHHHHHHH-HHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHHHhhcC--CCCCCCC
Q 047499           17 ERTISRKIVEMVLA-LALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMI--PAPDLRS   93 (152)
Q Consensus        17 ~rt~~rK~~E~~lA-~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~La~l~--~~P~~y~   93 (152)
                      +++..||+.|++.+ +.||..++|++|++.|+|.++||.+.+||+.|+..||++++      |++.|+|+.  +.|.+|.
T Consensus        67 ~~~~~~k~~e~l~~~l~l~~~~~k~~i~~~~~n~v~f~~~~~gi~~a~~~~~~~~~------~~~~l~Gi~~~~~~~R~y  140 (702)
T 1qme_A           67 EKTQFNKVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKEL------EAAEVKGIDFTTSPNRSY  140 (702)
T ss_dssp             ---------------------------------------------------------------------------CEEEC
T ss_pred             chhhHHHHHHHHHHHhCCCHHHHHHHHhhccccceEEEecccCCCHHHHHHHHHHH------HhcCCCcEEEEecceEEC
Confidence            45788999999997 89999999999999999999999999999999999999876      778899998  9999999


Q ss_pred             CCCCc
Q 047499           94 PLKDC   98 (152)
Q Consensus        94 P~~~~   98 (152)
                      |..+.
T Consensus       141 P~~~~  145 (702)
T 1qme_A          141 PNGQF  145 (702)
T ss_dssp             TTSSS
T ss_pred             CCccc
Confidence            98654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d2oqoa1	187	d.2.1.10 (A:57-243) Penicillin-binding protein 1a,	9e-33
d2olua1	225	d.2.1.10 (A:68-292) Penicillin-binding protein 2,	3e-21

>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a {Aquifex aeolicus [TaxId: 63363]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: PBP transglycosylase domain-like
domain: Penicillin-binding protein 1a, PBP1a
species: Aquifex aeolicus [TaxId: 63363]

 Score =  112 bits (281), Expect = 9e-33
 Identities = 53/117 (45%), Positives = 72/117 (61%)

Query: 7   QLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFY 66
           QL KN FL  ERT+ RKI E +LA+ +ER   K +I+  Y+++IY G G YG+E+A+  Y
Sbjct: 65  QLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQVY 124

Query: 67  FGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETA 123
           FGKH   LS+ EAA+LA +  AP   +P     R    +  VLKRM+E G+I  E  
Sbjct: 125 FGKHVWELSLDEAALLAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPEQY 181

>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: PBP transglycosylase domain-like
domain: Penicillin-binding protein 2, PBP2
species: Staphylococcus aureus [TaxId: 1280]

 Score = 83.7 bits (206), Expect = 3e-21
 Identities = 40/128 (31%), Positives = 63/128 (49%)

Query: 7   QLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFY 66
           Q+VK+ FL   ++I RK  E  L+  LE+  SK +I   Y++KIY+  G+ GI++A+ +Y
Sbjct: 85  QVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAKYY 144

Query: 67  FGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWV 126
           F K    L++AE A LAG+   P+  +        +  +  VL  M     I  +     
Sbjct: 145 FNKDLKDLNLAEEAYLAGLPQVPNNYNIYDHPKAAEDRKNTVLYLMHYHKRITDKQWEDA 204

Query: 127 LKQPLDLR 134
            K  L   
Sbjct: 205 KKIDLKAN 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d2olua1	225	Penicillin-binding protein 2, PBP2 {Staphylococcus	100.0
d2oqoa1	187	Penicillin-binding protein 1a, PBP1a {Aquifex aeol	100.0

>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: PBP transglycosylase domain-like
domain: Penicillin-binding protein 2, PBP2
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.8e-52  Score=335.19  Aligned_cols=134  Identities=31%  Similarity=0.359  Sum_probs=127.9

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||||||++++++||+.||++|+++|++||+.|||+||||+|||.+|||+|+|||++||++||||++++||++|+|+
T Consensus        80 STITqQl~kn~~~~~~rt~~RK~~E~~~A~~lE~~~sK~eILe~YLN~v~~G~~~yGi~aAa~~YFgK~~~~Lt~~EaA~  159 (225)
T d2olua1          80 STLTQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAKYYFNKDLKDLNLAEEAY  159 (225)
T ss_dssp             CHHHHHHHHHTTCC----CCTTHHHHHHHHHHHHHSCHHHHHHHHHHHCBCSTTEESHHHHHHHHHSCCGGGCCHHHHHH
T ss_pred             chHHHHHhhhcchhccccHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhhccCCcccHHHHHHHHhccChhhhchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD  135 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~  135 (152)
                      ||||+++|+.|+|+++++.+.+||+.||++|++.|+||++|++.|..+|+++..
T Consensus       160 La~l~~~P~~y~P~~~~~~a~~Rr~~VL~~M~~~g~Is~~e~~~a~~~~l~~~~  213 (225)
T d2olua1         160 LAGLPQVPNNYNIYDHPKAAEDRKNTVLYLMHYHKRITDKQWEDAKKIDLKANL  213 (225)
T ss_dssp             HHHGGGSTTTSCTTTCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHTSCGGGGC
T ss_pred             heeeccchhhhhhccchHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCCCCcCc
Confidence            999999999999999999999999999999999999999999999999997653

>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: PBP transglycosylase domain-like
domain: Penicillin-binding protein 1a, PBP1a
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=5.5e-52  Score=325.48  Aligned_cols=128  Identities=42%  Similarity=0.605  Sum_probs=126.4

Q ss_pred             CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499            2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM   81 (152)
Q Consensus         2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~   81 (152)
                      ||||||+|||++++++||+.||++|+++|++||+.|||+||||+|||.+|||+|+|||++||++||||++++||++|+|+
T Consensus        60 STITqQl~k~l~~~~~rs~~rK~~E~~~a~~lE~~~sK~eILe~YLN~v~~G~~~yGi~aAa~~yFgk~~~~Lt~~EaA~  139 (187)
T d2oqoa1          60 STITQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQVYFGKHVWELSLDEAAL  139 (187)
T ss_dssp             CCHHHHHHHTTSSSCCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCBCSTTCBSHHHHHHHHHSSCGGGCCHHHHHH
T ss_pred             chhhHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHccCCCchhhHHHHHHHHHhcccccCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcC
Q 047499           82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQ  129 (152)
Q Consensus        82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~  129 (152)
                      ||+++++|+.|+|.+||+.+++||+.||++|+++|+||++|++.|+.+
T Consensus       140 La~l~~~P~~~~p~~~~~~~~~R~~~vL~~m~~~g~Is~~e~~~Al~E  187 (187)
T d2oqoa1         140 LAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPEQYEEAVNK  187 (187)
T ss_dssp             HHHSTTCHHHHCTTTCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHTC
T ss_pred             HHHHhccccccCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCc
Confidence            999999999999999999999999999999999999999999999864