Citrus Sinensis ID: 047506
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 947 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M658 | 2001 | Helicase protein MOM1 OS= | yes | no | 0.595 | 0.281 | 0.356 | 1e-102 | |
| Q7KU24 | 1883 | Chromodomain-helicase-DNA | yes | no | 0.116 | 0.058 | 0.398 | 1e-14 | |
| Q12873 | 2000 | Chromodomain-helicase-DNA | yes | no | 0.116 | 0.055 | 0.362 | 2e-14 | |
| O97159 | 1982 | Chromodomain-helicase-DNA | no | no | 0.116 | 0.055 | 0.380 | 2e-14 | |
| B6ZLK2 | 1719 | Chromodomain-helicase-DNA | no | no | 0.116 | 0.063 | 0.407 | 5e-14 | |
| P40201 | 1711 | Chromodomain-helicase-DNA | no | no | 0.116 | 0.064 | 0.407 | 5e-14 | |
| Q6PDQ2 | 1915 | Chromodomain-helicase-DNA | no | no | 0.116 | 0.057 | 0.353 | 5e-14 | |
| O14646 | 1710 | Chromodomain-helicase-DNA | no | no | 0.116 | 0.064 | 0.407 | 6e-14 | |
| Q14839 | 1912 | Chromodomain-helicase-DNA | no | no | 0.116 | 0.057 | 0.353 | 6e-14 | |
| O14647 | 1828 | Chromodomain-helicase-DNA | no | no | 0.102 | 0.053 | 0.428 | 9e-14 |
| >sp|Q9M658|MOM1_ARATH Helicase protein MOM1 OS=Arabidopsis thaliana GN=MOM1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 232/650 (35%), Positives = 355/650 (54%), Gaps = 86/650 (13%)
Query: 13 LGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS 72
LG+IL+DFV QRFG SYE + SKK +A+ NFN S V LLETRAC +IKL
Sbjct: 593 LGNILEDFVGQRFGPKSYEH---GIYSSKKNSAINNFNKESQCCVLLLETRACSQTIKLL 649
Query: 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDG 132
A I+F S +P +D++ +++I ++ E+ K+FRLYS CTVEEK LILA+Q+K +
Sbjct: 650 RADAFILFGSSLNPSHDVKHVEKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQNK 709
Query: 133 YAQNM-RPMAKFQPLVQATF-------------------FEQTLLNDVVQEFSTILTQNG 172
+N+ R + + A++ FEQ++++ V+ EFS+IL+ G
Sbjct: 710 AVENLNRSLTHALLMWGASYLFDKLDHFHSSETPDSGVSFEQSIMDGVIHEFSSILSSKG 769
Query: 173 EDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEGMDEERPHIFWTNLLEGKHPCWKYYS 232
+ + K ++L+ K +QGTYS+ LFGE ++ DEE P+IFW+ LL GK+P WKY S
Sbjct: 770 GEENEVKLCLLLEAKHAQGTYSSDSTLFGEDHIKLSDEESPNIFWSKLLGGKNPMWKYPS 829
Query: 233 GSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLE--EGKTVSRDK 290
+ Q +RKRVQYF+ + P+ AKK+++ + + + P ++ E K +D
Sbjct: 830 DTPQRNRKRVQYFEGSEASPKTGDGGNAKKRKKASDDVTDPRVTDPPVDDDERKASGKDH 889
Query: 291 EGT--SVDSSTIHWTCASSST-----------------LVNNFPE---TSRELSYL---- 324
G S T+ +C SS T ++ PE S++ +
Sbjct: 890 MGALESPKVITLQSSCKSSGTDGTLDGNDAFGLYSMGSHISGIPEDMLASQDWGKIPDES 949
Query: 325 QKSLHLLLKPEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWT 384
Q+ LH +LKP+MAKLC+VL L + VG FLEY++ NHR+ EP + QAF+I+L W
Sbjct: 950 QRRLHTVLKPKMAKLCQVLHLSDACTSMVGNFLEYVIENHRIYEEPATTFQAFQIALSWI 1009
Query: 385 AASLRKQKIDHKESLELAKKHLHFSCKKGEADYVYSLLQCLKEVF--------------- 429
AA L KQ + HKESL A L F C + E DY+YS+L C+K +F
Sbjct: 1010 AALLVKQILSHKESLVRANSELAFKCSRVEVDYIYSILSCMKSLFLEHTQGLQFDCFGTN 1069
Query: 430 ----ELSMKDVSKYQSNARLSQSEI---------------VSHRQELFKVAQKDFSRSIR 470
+S K V++ S A + +I R + A +D ++I
Sbjct: 1070 SKQSVVSTKLVNESLSGATVRDEKINTKSMRNSSEDEECMTEKRCSHYSTATRDIEKTIS 1129
Query: 471 GIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCN-GKMQMDKL 529
GI+KK +KQ+ KL + E+K ++ Y ++K +LET K EAAVIR C+ Q+ L
Sbjct: 1130 GIKKKYKKQVQKLVQEHEEKKMELLNMYADKKQKLETSKSVEAAVIRITCSRTSTQVGDL 1189
Query: 530 KVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSW 579
K+L++ Y KF E++ +++ L++LE +H + KKL++ + W+ ++KSW
Sbjct: 1190 KLLDHNYERKFDEIKSEKNECLKSLEQMHDVAKKKLAEDEACWINRIKSW 1239
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Required for the heritable maintenance of transcriptional gene silencing (TGS) in heterochromatin, and particularly in the intermediate bivalent heterochromatin, characterized by an unsual methylation pattern consisting in hypermethylated DNA and histone H3 'Lys-4' methylation (H3K4me) together with depletion of histone H3 'Lys-9' methylation (H3K9me), in a chromatin methylation-independent manner, in a non-CG methylation context. May play a role in the RNA polymerase IV/V (Pol-IV/V)-mediated RNA-directed DNA methylation (RdDM) leading to TGS (also called siRNA-mediated TGS pathway), probably by modulating small interfering RNA (siRNA) accumulation. Especially involved in the gene silencing of the transcriptionally silent information region (TSI), 5S ribosomal RNA genes (localized in the pericentromeric heterochromatin of chromosomes 3, 4, and 5) and of 180-bp satellite repeats and 106B long terminal repeat (LTR)-like repeats of the chromocenters. Prevents the aberrant mRNA transcriptional read-through. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: - |
| >sp|Q7KU24|CHD1_DROME Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3 | Back alignment and function description |
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| >sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2 | Back alignment and function description |
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| >sp|B6ZLK2|CHD1_CHICK Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 | Back alignment and function description |
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| >sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2 | Back alignment and function description |
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| >sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 947 | ||||||
| 255577062 | 1982 | mom(plant), putative [Ricinus communis] | 0.765 | 0.365 | 0.424 | 1e-163 | |
| 224122872 | 2283 | chromatin remodeling complex subunit [Po | 0.809 | 0.335 | 0.428 | 1e-159 | |
| 224132518 | 1996 | chromatin remodeling complex subunit [Po | 0.809 | 0.384 | 0.415 | 1e-151 | |
| 359478708 | 1534 | PREDICTED: uncharacterized protein LOC10 | 0.747 | 0.461 | 0.412 | 1e-139 | |
| 449443580 | 2887 | PREDICTED: uncharacterized protein LOC10 | 0.731 | 0.240 | 0.389 | 1e-124 | |
| 449499771 | 1675 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.534 | 0.302 | 0.435 | 1e-111 | |
| 297746282 | 1452 | unnamed protein product [Vitis vinifera] | 0.422 | 0.275 | 0.5 | 1e-108 | |
| 18390848 | 2001 | ATP-dependent helicase family protein [A | 0.595 | 0.281 | 0.356 | 1e-101 | |
| 8778840 | 2254 | T6D22.14 [Arabidopsis thaliana] | 0.595 | 0.250 | 0.356 | 1e-100 | |
| 8132768 | 2001 | MOM [Arabidopsis thaliana] | 0.595 | 0.281 | 0.355 | 1e-100 |
| >gi|255577062|ref|XP_002529415.1| mom(plant), putative [Ricinus communis] gi|223531092|gb|EEF32941.1| mom(plant), putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 355/836 (42%), Positives = 483/836 (57%), Gaps = 111/836 (13%)
Query: 13 LGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS 72
+GDILDDFVRQRFG DSYER+DG V +K+AAL NFNN RFVFLLE+ AC PSIKLS
Sbjct: 531 IGDILDDFVRQRFGQDSYERIDGCVNQKRKQAALNNFNNQKTRFVFLLESCACLPSIKLS 590
Query: 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDG 132
SV VIIF SDW P NDLR L++ITLD Q EQ+KVFRLYS TVEE VLILAK DK D
Sbjct: 591 SVDTVIIFGSDWIPANDLRNLRKITLDSQFEQLKVFRLYSSFTVEENVLILAKHDKILDS 650
Query: 133 YAQNM-----------------RPMAKFQ-----PLVQATFFEQTLLNDVVQEFSTILTQ 170
Q++ R + +FQ +++ F+++ DV+++F TIL+Q
Sbjct: 651 NVQSISRATTQSLLMRGASYLFRKLDEFQNSSILNTNRSSSFDESSEKDVIRDFLTILSQ 710
Query: 171 NGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEGMDEERPHIFWTNLLEGKHPCWKY 230
+ +DN++ F++I+K K +QGTY + PL GE K + DEE PH FW LLEGK P W +
Sbjct: 711 DAKDNNSSTFSVIVKAKLNQGTYVSDPPLPGERKSQVRDEEFPHRFWKKLLEGKQPEWTF 770
Query: 231 YSGSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDK 290
SG SQ +RKRVQ +D+ KKPE E EV KK ++ A+N V Q+ + EG T + +
Sbjct: 771 TSGLSQRNRKRVQNSEDILKKPEGEHGEVVKKHKKAANNDVGQNHFESAPFEGNTDTGNN 830
Query: 291 EGT-SVDSSTIHWTCASSSTLVN----NFPETSRELSYL--------------------- 324
EG S +H + SS +N N + + L+ +
Sbjct: 831 EGNLGGPSHNVHQLMSGSSDHLNASYANHAPSLQSLTNVILDEPSSNMAKSNERINVHDS 890
Query: 325 QKSLHLLLKPEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWT 384
QKSLHLLLKP+MAKLCE+LKL ++VK V FLEY+M NH V REP ++LQAF+ISLCWT
Sbjct: 891 QKSLHLLLKPDMAKLCEILKLPDNVKAMVQSFLEYVMNNHHVIREPATILQAFQISLCWT 950
Query: 385 AASLRKQKIDHKESLELAKKHLHFSCKKGEADYVYSLLQCLKEVFELSMKDV------SK 438
AASL K KIDHKESL LAK+HL+F CKK EADYVYS +CLK+VF +V
Sbjct: 951 AASLLKHKIDHKESLALAKQHLNFGCKKEEADYVYSKFRCLKKVFLYHTGNVMLTCSSEN 1010
Query: 439 YQSNARLSQSEIVSHR--QELFK--VAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDI 494
QS R+ E + R QEL + +A++DFS+SI+ I++KC KQM K+ KQ EE +
Sbjct: 1011 SQSVTRVVNKEYLQARSGQELLQLGLAKQDFSKSIKDIERKCDKQMRKVSQKQQEEIVEF 1070
Query: 495 DKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENL 554
+K+Y E+KAQLE K++TEAAVIR H N M+ +KLK+L+ EY +KF+ELE+ +R ++L
Sbjct: 1071 NKKYNEEKAQLEYKQKTEAAVIRLHSNSSMRKNKLKLLDIEYKKKFEELEQQMVIRRKDL 1130
Query: 555 EALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHENLEN 614
E +H+A+ KL ++ W+E VKSW Q++L NKP SN+ GH+ E +V + +N E
Sbjct: 1131 EEMHMAARDKLKKRKACWLEGVKSWAQVELINKPPSNKIGHNQENAASVNSYLKKQNPE- 1189
Query: 615 NASNSIHISAGQNHDKLINIITPVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEA 674
+ G + K+ LE P + L G
Sbjct: 1190 -------VIQGMQNKKV-----------PLEVPETVSSDDDDDYLLPG------------ 1219
Query: 675 SIAGLKERIEDSNSGDNQENNEPLNPCSREQILDGATLSMP-------DGHIQLGVTETI 727
+ E+I D D + PL + + DG +++P + + LGV+E +
Sbjct: 1220 -VQSTNEQIFDGVRSDLPDGEAPLRISTAISLRDGLEVNVPSSREQFSNAEVPLGVSEAV 1278
Query: 728 SSSDGAGNCLLPVHSSGGKICDEARLSPEAQVP-------GEVAETVSSNDDLENV 776
SSSDGA + C+E P P E+A +V S ++++ +
Sbjct: 1279 SSSDGA-------EHTNKFTCNEHNNGPTVMRPQNLSMGGSEIANSVGSQENIQGL 1327
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122872|ref|XP_002318937.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222857313|gb|EEE94860.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224132518|ref|XP_002328309.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222837824|gb|EEE76189.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|359478708|ref|XP_002282476.2| PREDICTED: uncharacterized protein LOC100258707 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449443580|ref|XP_004139555.1| PREDICTED: uncharacterized protein LOC101222705 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449499771|ref|XP_004160912.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101222705 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297746282|emb|CBI16338.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|18390848|ref|NP_563806.1| ATP-dependent helicase family protein [Arabidopsis thaliana] gi|30680475|ref|NP_849608.1| ATP-dependent helicase family protein [Arabidopsis thaliana] gi|75185434|sp|Q9M658.1|MOM1_ARATH RecName: Full=Helicase protein MOM1; AltName: Full=Protein MAINTENANCE OF METHYLATION; AltName: Full=Protein MORPHEUS MOLECULE 1 gi|8132770|gb|AAF73381.1| MOM [Arabidopsis thaliana] gi|332190115|gb|AEE28236.1| ATP-dependent helicase family protein [Arabidopsis thaliana] gi|332190116|gb|AEE28237.1| ATP-dependent helicase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|8778840|gb|AAF79839.1|AC026875_19 T6D22.14 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|8132768|gb|AAF73380.1| MOM [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 947 | ||||||
| TAIR|locus:2205205 | 2001 | MOM "MORPHEUS MOLECULE" [Arabi | 0.438 | 0.207 | 0.267 | 5.4e-68 | |
| UNIPROTKB|H3BU65 | 113 | CHD2 "Chromodomain-helicase-DN | 0.106 | 0.893 | 0.421 | 2.3e-13 | |
| UNIPROTKB|F1N8K9 | 559 | CHD1 "Chromodomain-helicase-DN | 0.270 | 0.457 | 0.298 | 4.6e-13 | |
| UNIPROTKB|F1NP27 | 1803 | CHD1 "Chromodomain-helicase-DN | 0.270 | 0.141 | 0.298 | 4.8e-13 | |
| UNIPROTKB|F1N8K8 | 1804 | CHD1 "Chromodomain-helicase-DN | 0.270 | 0.141 | 0.298 | 4.8e-13 | |
| UNIPROTKB|I3L6N4 | 1798 | CHD1 "Uncharacterized protein" | 0.269 | 0.141 | 0.294 | 1.4e-11 | |
| UNIPROTKB|I3LIS2 | 1799 | CHD1 "Uncharacterized protein" | 0.269 | 0.141 | 0.294 | 1.4e-11 | |
| UNIPROTKB|B6ZLK2 | 1719 | CHD1 "Chromodomain-helicase-DN | 0.270 | 0.148 | 0.298 | 1.8e-11 | |
| UNIPROTKB|F1MGF2 | 1810 | CHD1 "Uncharacterized protein" | 0.268 | 0.140 | 0.293 | 2.2e-11 | |
| UNIPROTKB|F1RN66 | 1794 | CHD1 "Uncharacterized protein" | 0.269 | 0.142 | 0.294 | 2.8e-11 |
| TAIR|locus:2205205 MOM "MORPHEUS MOLECULE" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 5.4e-68, Sum P(3) = 5.4e-68
Identities = 125/467 (26%), Positives = 211/467 (45%)
Query: 334 PEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKI 393
P+MAKLC+VL L + VG FLEY++ NHR+ EP + QAF+I+L W AA L KQ +
Sbjct: 959 PKMAKLCQVLHLSDACTSMVGNFLEYVIENHRIYEEPATTFQAFQIALSWIAALLVKQIL 1018
Query: 394 DHKESLELAKKHLHFSCKKGEADYVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSH 453
HKESL A L F C + E DY+YS+L C+K +F L ++ S+ +VS
Sbjct: 1019 SHKESLVRANSELAFKCSRVEVDYIYSILSCMKSLF-LEHTQGLQFDCFGTNSKQSVVS- 1076
Query: 454 RQELFKVAQKDFSRSIRGIQKKCQKQMAK-LRHKQLEEKKDIDKRYEEQKAQLETKKRTE 512
K + S+ G + +K K +R+ +E+ +KR ++T
Sbjct: 1077 --------TKLVNESLSGATVRDEKINTKSMRNSSEDEECMTEKRCSHYSTATRDIEKTI 1128
Query: 513 AAVIRYHCNGKMQMDKLKVLENEYAEKFKELER---DRDVRLENLEALHVASMKKLSDKQ 569
+ + + + K Q+ KL V E+E EK EL D+ +LE +++ A ++ +
Sbjct: 1129 SGIKKKY---KKQVQKL-VQEHE--EKKMELLNMYADKKQKLETSKSVEAAVIRITCSRT 1182
Query: 570 TSWVEQVKSWLQIQLSNKPSSNEYGHSVECLQAVEQ-HN-AHENLENNASNSIHISAGQN 627
++ V +K L K + ECL+++EQ H+ A + L + + I+ ++
Sbjct: 1183 STQVGDLKL-LDHNYERKFDEIK-SEKNECLKSLEQMHDVAKKKLAED--EACWINRIKS 1238
Query: 628 HDKLINIITPV--------SGEGRLE--SPVIQ-----ETVAGPLRLNNGGDKLDTIASA 672
+ + P+ SG + +P +Q A N K++ + A
Sbjct: 1239 WAAKLKVCVPIQSGNNKHFSGSSNISQNAPDVQICNNANVEATYADTNCMASKVNQVPEA 1298
Query: 673 EASIA----GLKERIEDSNSGDNQENNEPLNPCSREQILDGATLSMPDGHIQLGVTETIS 728
E ++ G +++ + N E + ++ SREQ+ T S + H + V E +
Sbjct: 1299 ENTLGTMSGGSTQQVHEMVDVRNDETMD-VSALSREQL----TKSQSNEHASITVPEILI 1353
Query: 729 SSDGAGN-CLLPVHSSGGKICDE-ARLSPEAQVPGEVAETVSSNDDL 773
+D L VH S + CD + + V V E S ++L
Sbjct: 1354 PADCQEEFAALNVHLSEDQNCDRITSAASDEDVSSRVPEVSQSLENL 1400
|
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| UNIPROTKB|H3BU65 CHD2 "Chromodomain-helicase-DNA-binding protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1N8K9 CHD1 "Chromodomain-helicase-DNA-binding protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NP27 CHD1 "Chromodomain-helicase-DNA-binding protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1N8K8 CHD1 "Chromodomain-helicase-DNA-binding protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3L6N4 CHD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|I3LIS2 CHD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B6ZLK2 CHD1 "Chromodomain-helicase-DNA-binding protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MGF2 CHD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RN66 CHD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | CHR945-1 | chromatin remodeling complex subunit (2283 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 947 | |||
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 3e-14 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 1e-04 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 1e-04 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 2e-04 | |
| pfam09731 | 493 | pfam09731, Mitofilin, Mitochondrial inner membrane | 2e-04 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-14
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 9/113 (7%)
Query: 13 LGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKL 71
L DIL+D++ R Y R+DGN + A++ FN GS +FVFLL TRA I L
Sbjct: 499 LLDILEDYLMYR--GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556
Query: 72 SSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCT---VEEKVL 121
++ VI++ SDW+P DL+A R Q ++++VFR FCT +EEKV+
Sbjct: 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR---FCTEYTIEEKVI 606
|
Length = 1033 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 947 | |||
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.98 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.97 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 99.95 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.95 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 99.94 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 99.91 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 99.87 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 99.85 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.83 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.8 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.52 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 99.45 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.43 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.37 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.35 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.12 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 98.68 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 98.68 | |
| PTZ00110 | 545 | helicase; Provisional | 98.67 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 98.66 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 98.65 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 98.64 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 98.6 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 98.6 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 98.56 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 98.54 | |
| PTZ00424 | 401 | helicase 45; Provisional | 98.53 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 98.52 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 98.49 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 98.47 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 98.32 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 98.3 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 98.29 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 98.23 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 98.22 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 98.19 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 98.12 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 98.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 97.99 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 97.95 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 97.94 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 97.91 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 97.91 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 97.78 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 97.75 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 97.72 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.72 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 97.72 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 97.68 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 97.6 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 97.55 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 97.52 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 97.47 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 97.43 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 97.38 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 97.34 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 97.28 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 97.24 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 97.21 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 97.17 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 97.15 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 97.13 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 97.13 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 97.13 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 97.12 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 97.09 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 97.08 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 97.04 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 97.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 97.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 96.97 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 96.97 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 96.96 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 96.93 | |
| PF06465 | 66 | DUF1087: Domain of Unknown Function (DUF1087); Int | 96.9 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 96.86 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 96.66 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 96.47 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 96.46 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 96.46 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 96.46 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 96.44 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 96.36 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 96.25 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 96.24 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 96.22 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 96.14 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 96.08 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 95.96 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 95.87 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 95.84 | |
| PF14619 | 74 | SnAC: Snf2-ATP coupling, chromatin remodelling com | 95.77 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 95.36 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 95.24 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 94.92 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 94.85 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 94.82 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 94.77 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 94.75 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 94.47 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 94.19 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 94.17 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 91.91 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 91.5 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 91.22 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 90.12 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 89.88 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 88.67 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 87.82 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 87.51 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 86.55 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 85.71 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 83.74 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 82.51 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 82.45 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 81.91 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 81.37 |
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=415.03 Aligned_cols=133 Identities=35% Similarity=0.506 Sum_probs=129.8
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
||||||+ .|||||++||..| +++|.||||+++..-|+++||+||. +++.|||||||||||+||||++||||||
T Consensus 703 LIFSQMV----RmLDIL~eYL~~r--~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 703 LIFSQMV----RMLDILAEYLSLR--GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred EEhHHHH----HHHHHHHHHHHHc--CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 7999999 9999999999998 9999999999999999999999999 9999999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhcccc
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRP 139 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vidi~~ 139 (947)
||+||||++|+||++|||||||++.|.||||||++||||.|+++|++|+.||++||+.+.
T Consensus 777 FDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~ 836 (1373)
T KOG0384|consen 777 FDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMD 836 (1373)
T ss_pred eCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999985543
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 947 | ||||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 7e-13 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 1e-10 |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 2e-20
Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL D++ + +++R+DG V ++++ ++ +FN+ S FVFLL TRA I L +
Sbjct: 586 DILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
V+IF SDW+P DL+A+ R Q + V+RL S TVEE+VL A++
Sbjct: 644 ADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARK 696
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 947 | |||
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.96 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.96 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.94 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.91 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 99.89 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.77 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.7 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.57 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.47 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.46 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.45 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.45 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.42 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.42 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.41 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.4 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.39 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.01 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.29 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.23 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.23 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.22 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.22 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.2 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.17 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.16 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.12 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.07 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.07 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.05 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.04 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.03 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.03 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 98.99 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 98.99 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 98.97 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 98.86 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 98.84 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 98.78 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 98.67 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 98.56 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 98.53 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 98.5 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 98.43 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 98.42 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 98.34 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 98.23 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 98.2 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 98.18 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 98.1 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 98.1 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 98.03 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 97.94 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 97.76 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 97.75 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 97.73 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 97.69 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 97.59 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 97.57 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.52 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 97.44 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 97.36 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 97.33 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 97.29 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 97.02 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 96.92 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 96.91 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 96.86 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 94.53 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 94.35 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 92.69 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 81.71 |
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=261.13 Aligned_cols=130 Identities=20% Similarity=0.270 Sum_probs=111.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||||. .++++|+++|..++ |+.+.+++|+++..+|++++++|++++.+.|||++|++||.||||+.|++||+|
T Consensus 116 lIFs~~~----~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~ 190 (271)
T 1z5z_A 116 AIFTQFV----DMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 190 (271)
T ss_dssp EEEESCH----HHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEEC
T ss_pred EEEeccH----HHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEE
Confidence 6999999 99999999998743 799999999999999999999999987788999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
|++|||..+.||+||+||+||+++|+||+|++.+||||+|++++..|..+...++
T Consensus 191 d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~ 245 (271)
T 1z5z_A 191 DRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDII 245 (271)
T ss_dssp SCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGG
T ss_pred CCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988886
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 947 | ||||
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 3e-04 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 0.002 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 0.003 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 0.004 |
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 24/98 (24%), Positives = 41/98 (41%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+ G + ++ + F N +L +A I L+S + VI F W+P
Sbjct: 112 EVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAV 171
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
+ +A R+ Q + V +L S T+EEK+ L
Sbjct: 172 EDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 209
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 947 | |||
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.97 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.96 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.68 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.62 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.48 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.45 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.45 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.33 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.25 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.25 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.06 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 98.79 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 98.69 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.25 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.23 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.03 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 97.67 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 97.58 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.5 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 96.59 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 95.62 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 90.66 |
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.97 E-value=1.8e-32 Score=293.15 Aligned_cols=130 Identities=28% Similarity=0.479 Sum_probs=125.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
||||||+ .++|+|+++|..+ |+.|.+++|+++..+|++++++||+ ..+.+|||++++|||.||||+.|++||+
T Consensus 122 lIFs~~~----~~ld~l~~~l~~~--g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~ 195 (346)
T d1z3ix1 122 VLVSNYT----QTLDLFEKLCRNR--RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM 195 (346)
T ss_dssp EEEESCH----HHHHHHHHHHHHH--TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE
T ss_pred eEEeehh----hhhHHHHHHHhhh--hccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEE
Confidence 6999999 9999999999998 9999999999999999999999998 4567899999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhc
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQN 136 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vid 136 (947)
|||+|||+.+.||+||+||+||+++|+||||++.|||||+|++++..|+.+...|++
T Consensus 196 ~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~ 252 (346)
T d1z3ix1 196 FDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVD 252 (346)
T ss_dssp CSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCS
T ss_pred ecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999888863
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|