Citrus Sinensis ID: 047518
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | 2.2.26 [Sep-21-2011] | |||||||
| Q3ECK2 | 548 | Pentatricopeptide repeat- | yes | no | 0.984 | 0.459 | 0.371 | 3e-48 | |
| Q9SI78 | 485 | Pentatricopeptide repeat- | no | no | 0.953 | 0.503 | 0.372 | 5e-47 | |
| Q9FLL3 | 527 | Pentatricopeptide repeat- | no | no | 0.933 | 0.453 | 0.375 | 2e-46 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.949 | 0.403 | 0.328 | 1e-45 | |
| P0C7R3 | 512 | Pentatricopeptide repeat- | no | no | 0.984 | 0.492 | 0.350 | 2e-45 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.992 | 0.440 | 0.299 | 2e-43 | |
| Q9LUR2 | 507 | Putative pentatricopeptid | no | no | 0.933 | 0.471 | 0.360 | 7e-43 | |
| Q9SHK2 | 500 | Pentatricopeptide repeat- | no | no | 0.976 | 0.5 | 0.347 | 1e-42 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.992 | 0.400 | 0.307 | 2e-42 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.996 | 0.405 | 0.300 | 8e-42 |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 191 bits (486), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 161/277 (58%), Gaps = 25/277 (9%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL + DI N+A+ +F M++ P P V FN +L + K K YD V+SL K
Sbjct: 54 ERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPSIVD-FNRLLSAIVKLKKYDVVISLGK 109
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
++ G+ DLYT +I+INCFC +VS +LG++L+ + PD VT SL+ C
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRN 169
Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
KPD + YN IID LCK V+ A + F +++ K ++PNVVTYT
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 229
Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
+++ G C ++ W++A RL +M+ + + PNV+T++ ++D KNGK+ EA L + M++
Sbjct: 230 ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289
Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+ PD TY++L++G CL R++ A ++F M S GC
Sbjct: 290 SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGC 326
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 155/266 (58%), Gaps = 22/266 (8%)
Query: 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
+++ E + +F M++ P P V F+ +L +AK+K+YD V+SLF + G+ DL
Sbjct: 46 SSMNLEEEIDLFCKMIQSRPLPSIVD-FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDL 104
Query: 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------- 116
Y+++I+INC C+ R V+G++++ + PDVVT +SLI C
Sbjct: 105 YSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSK 164
Query: 117 ------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
+PD + YNTIIDG CK G V+ A ELF +M+ V+ + VTY S++ G C +
Sbjct: 165 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 224
Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
W++A RL +M+ + + PNV+TF ++D K GK EA L + M + V PD FTYN+
Sbjct: 225 WSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNS 284
Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
L++G C+ GRV+ AK++ M + GC
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGC 310
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 151/261 (57%), Gaps = 22/261 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
NEAL +F +M+ P P + F +L +AK K +D V++L L G+ DLYT ++
Sbjct: 54 NEALDLFTHMVESRPLPSIID-FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
L+NCFC+ + LG++++ F PD+VTFTSLI C
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172
Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
KPD + Y TIID LCK G V+ A LF +M++ ++P+VV YTS++ G C + W +A
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 232
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
L M + ++P+V+TFN ++D K GK +A L + MI+ + P+ FTY +L++GF
Sbjct: 233 SLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGF 292
Query: 236 CLTGRVNHAKELFVSMESMGC 256
C+ G V+ A+++F ME+ GC
Sbjct: 293 CMEGCVDEARQMFYLMETKGC 313
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 154/304 (50%), Gaps = 61/304 (20%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL+S I I ++A+ +F M+R P P V F+ +A+ K ++ VL K
Sbjct: 58 ERLRSG----IVDIKKDDAIALFQEMIRSRPLPSLVD-FSRFFSAIARTKQFNLVLDFCK 112
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
+L G+ ++YT +I+INCFC+ + + VLG++++ + PD TF +LIK
Sbjct: 113 QLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEG 172
Query: 115 ---------------VCKPDAITYN----------------------------------- 124
C+PD +TYN
Sbjct: 173 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 232
Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
TIID LC+ G +D A LF +M+ K +K +VVTY S++RG C A WN+ L +M+ +
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292
Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
+ PNV+TFNV++D K GK+ EA+ L MI G+ P+ TYNTL+DG+C+ R++ A
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352
Query: 245 KELF 248
+
Sbjct: 353 NNML 356
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583, mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 157/277 (56%), Gaps = 25/277 (9%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
E+L++ G + +I +A +F M+ P P V F +L A + Y+TV+ +
Sbjct: 40 EKLRT---GFLHSIRFEDAFALFFEMVHSQPLPSIVD-FTRLLTATANLRRYETVIYFSQ 95
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
++ G+ DLY+ +ILI+CFC+ R+S VLG++++ + P +VTF SL+ C
Sbjct: 96 KMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVN 155
Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
+P+ + YNT+IDGLCK G ++ A EL +M+ K + +VVTY
Sbjct: 156 RIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYN 215
Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
+++ G CY+ W++A R+ +MM + + P+VVTF ++D K G +DEA L MIQ
Sbjct: 216 TLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQS 275
Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
V P+ TYN++++G C+ GR+ AK+ F M S GC
Sbjct: 276 SVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGC 312
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 170/354 (48%), Gaps = 100/354 (28%)
Query: 2 RLKSSGEGDITTITPN--------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD 53
R SSG GD I N +A+ +F M++ P P + FN +L +AK K +D
Sbjct: 44 RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFD 102
Query: 54 TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR-------------- 99
V+SL +++ G+ +LYT++ILINCFC+ ++S +LG++++
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 100 ---------------------SCFTPDVVTFTSLI---------------------KVCK 117
+ PD +TFT+LI + C+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222
Query: 118 PDAITYNTIIDGLCKQGFVD-----------------------------------KAKEL 142
P+ +TY +++GLCK+G +D A L
Sbjct: 223 PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNL 282
Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
F +M++K V+PNV+TY+S+I C W++A RL +M+++ + PNVVTFN ++D K
Sbjct: 283 FTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK 342
Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
GK+ EA L D MI+ + PD FTY++L++GFC+ R++ AK +F M S C
Sbjct: 343 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 22/261 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
N+AL +F M+ P P + F +L +AK YD V+SLF+++ G+ P L T +I
Sbjct: 65 NDALDLFTRMVHSRPLPS-IIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
+++C C + LG++++ F PD+VTFTSL+ C
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMG 183
Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
KP+ +TY T+I LCK ++ A ELF +M +PNVVTY +++ G C W +A
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAA 243
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
L +MM + ++PNV+TF ++D K GK+ EA L ++MIQ V PD FTY +L++G
Sbjct: 244 WLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGL 303
Query: 236 CLTGRVNHAKELFVSMESMGC 256
C+ G ++ A+++F ME GC
Sbjct: 304 CMYGLLDEARQMFYLMERNGC 324
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580 OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 155/276 (56%), Gaps = 26/276 (9%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL+S + +I N+AL +F M HP P V F+ +L +AK Y+ V+SLF+
Sbjct: 49 ERLRSG----LHSIKFNDALTLFCDMAESHPLPSIVD-FSRLLIAIAKLNKYEAVISLFR 103
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
L G+ DLY+ + LI+CFC+ R+S LG++++ F P +VTF SL+ C
Sbjct: 104 HLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVN 163
Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
+P+ + YNTIID LC++G V+ A ++ MK ++P+VVTY
Sbjct: 164 RFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYN 223
Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
S+I ++ W + R+ +MM G+ P+V+TF+ ++D K G++ EA + MIQ
Sbjct: 224 SLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQR 283
Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
V P+ TYN+L++G C+ G ++ AK++ + S G
Sbjct: 284 SVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 166/354 (46%), Gaps = 100/354 (28%)
Query: 2 RLKSSGEGDITTITPN--------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD 53
R SSG GD I N +A+ +F M++ P P V FN +L +AK K +D
Sbjct: 44 RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVE-FNKLLSAIAKMKKFD 102
Query: 54 TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR-------------- 99
V+SL +++ + LYT++ILINCFC+ ++S +LG++++
Sbjct: 103 VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 100 ---------------------SCFTPDVVTFTSLI---------------------KVCK 117
+ PD +TFT+LI + C+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222
Query: 118 PDAITY-----------------------------------NTIIDGLCKQGFVDKAKEL 142
P+ +TY NTIID LCK VD A L
Sbjct: 223 PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 282
Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
F +M+ K ++PNVVTY+S+I C W++A +L +M+++ + PN+VTFN ++D K
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342
Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
GK EA L D MI+ + PD FTYN+L++GFC+ R++ AK++F M S C
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 396
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 165/356 (46%), Gaps = 101/356 (28%)
Query: 1 ERLKSSGEGDITTITPN---------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH 51
ER +S GD I N +A+ +F M++ P P V FN +L +AK
Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVE-FNKLLSAVAKMNK 98
Query: 52 YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR------------ 99
++ V+SL +++ + G+ DLYT+SI INCFC+ ++S VL ++++
Sbjct: 99 FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158
Query: 100 -----------------------SCFTPDVVTFTSLI---------------------KV 115
+ PD TFT+LI +
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
Query: 116 CKPDAITYNTIIDGLCKQGFVD-----------------------------------KAK 140
C+PD +TY T+++GLCK+G +D A
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAV 278
Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
+LF +M+ K ++PNVVTY S+I C W++A RL M+++ + PNVVTFN ++D
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAF 338
Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
K GK+ EA L + MIQ + PD TYN L++GFC+ R++ AK++F M S C
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDC 394
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.941 | 0.384 | 0.434 | 4e-64 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.972 | 0.402 | 0.419 | 8e-62 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.4 | 0.413 | 3e-59 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.4 | 0.413 | 2e-58 | |
| 449444222 | 588 | PREDICTED: pentatricopeptide repeat-cont | 0.925 | 0.403 | 0.433 | 4e-55 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.395 | 0.4 | 1e-54 | |
| 449444228 | 585 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.403 | 0.427 | 1e-54 | |
| 449462479 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.417 | 0.417 | 1e-53 | |
| 449458524 | 481 | PREDICTED: putative pentatricopeptide re | 0.929 | 0.494 | 0.429 | 1e-50 | |
| 449491568 | 412 | PREDICTED: pentatricopeptide repeat-cont | 0.75 | 0.466 | 0.517 | 3e-50 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/304 (43%), Positives = 177/304 (58%), Gaps = 63/304 (20%)
Query: 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
I +EA +F++++ M P+PP +SSFN +LG +AK K Y V+SL+KR++ GL PD T
Sbjct: 71 IKRSEAFSVFNHLIDMQPTPP-ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFIT 129
Query: 74 HSILINCFCKMGRVSHGFVVLGRILRSC-------------------------------- 101
+ILINC+C + +V G VLG +LR
Sbjct: 130 LNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMV 189
Query: 102 ---FTPDVVTFTSLIK---------------------------VCKPDAITYNTIIDGLC 131
+ P+VVT+ +L+ KP+ + Y TIID LC
Sbjct: 190 RMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLC 249
Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
K G +DK KELFL+MK + + P+VV Y+S+I G C+ W AK LF EM+D+GV PNVV
Sbjct: 250 KDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVV 309
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
TFNV++D LCK GKM+EA+ LL LMIQ G PD FTYNTL+DGFCL GR++ A++LFVSM
Sbjct: 310 TFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSM 369
Query: 252 ESMG 255
ES G
Sbjct: 370 ESKG 373
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 181/315 (57%), Gaps = 66/315 (20%)
Query: 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL 62
L++ G+IT I +A FD M+R HP PP +SSFN +LG LAK HY + SL+ +
Sbjct: 62 LRNCKTGNITAI---QAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNEM 117
Query: 63 NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------- 114
GL PDL+T SIL NC C + RVS + ILR + P+VVT+T+LIK
Sbjct: 118 RLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRI 177
Query: 115 -------------VCKPDAITYNT------------------------------------ 125
C P+A+TY T
Sbjct: 178 SEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGV 237
Query: 126 -----IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
IIDGLCK G D+AKELF +MK + + P+V++Y+++I GFC A W+++K LF E
Sbjct: 238 ITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDE 297
Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
M+DQGVQP++VTF+V++D LCK GK+ EA LL++MIQ G+ P+ TYN+L+DGFC+ G
Sbjct: 298 MVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGD 357
Query: 241 VNHAKELFVSMESMG 255
+N A+ELF+SM S G
Sbjct: 358 LNSARELFLSMPSKG 372
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 173/305 (56%), Gaps = 63/305 (20%)
Query: 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
IT +A F M+ +P+PP +SSF +L LAK KHY V L+ ++ +G+ PD T
Sbjct: 75 ITATQAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCT 133
Query: 74 HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
+IL+NC C + RV G V+ ILR + PD+VT+T+LIK
Sbjct: 134 LNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQ 193
Query: 116 ---CKPDAITYNTIIDGLCKQGFV------------------------------------ 136
C P+AITY T++ GLC+ G +
Sbjct: 194 KLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALC 253
Query: 137 -----DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
D+A++LF +MK + + P V++YTS+I GFC W EAKRLF EM++QGVQPNVV
Sbjct: 254 KDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVV 313
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
TFNV++D LCK GK+ EA LL++MIQ G+ P+ TYN+L++GFCL G +N A+ELFVSM
Sbjct: 314 TFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSM 373
Query: 252 ESMGC 256
S GC
Sbjct: 374 PSKGC 378
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 171/305 (56%), Gaps = 63/305 (20%)
Query: 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
+T AL F M+R P+P +SSFN +L LAK KHY V SL+ ++ +GL D T
Sbjct: 48 VTATHALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106
Query: 74 HSILINCFCKMGRVSHGFVVLGRILRSCF------------------------------- 102
+IL+NC C + R+ GF ILR +
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166
Query: 103 ----TPDVVTFTSLIKV---------------------------CKPDAITYNTIIDGLC 131
TPDVVT+ +LIK CKP+ ITYN I+DGLC
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226
Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
K G D+AK+LF +MK + + P++++Y S+I GFC A W E+KRL EM+DQG+QP++V
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMV 286
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
TFNV++D LCK GK+ EA LL +MI+ G+ PD TYN+L++GFC+ G +N A+ELFVSM
Sbjct: 287 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 346
Query: 252 ESMGC 256
S GC
Sbjct: 347 PSKGC 351
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 165/270 (61%), Gaps = 33/270 (12%)
Query: 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
+I+ +A FD M+R + SFN +L LAK +HY V SL+K+++ GL+PDL
Sbjct: 74 SISVTQAHQFFDLMMR------SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLL 127
Query: 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------- 115
T +ILINC C + R++ G + I+R + PDVVTFT+LIK
Sbjct: 128 TLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRM 187
Query: 116 ----CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------NVKPNVVTYTSVIRGF 165
C P+ +TY T+I GLC G ++ A + +M + N +PNV++Y+ +I G
Sbjct: 188 QKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGL 247
Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
C +W EA LF EM+DQGVQPNVVTF+V++D LCK G++ +A LL++MIQ G+ P+
Sbjct: 248 CKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNL 307
Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
FTY +L+ GFCL G +N AKELFVSM S G
Sbjct: 308 FTYTSLIKGFCLVGDLNSAKELFVSMPSKG 337
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 173/310 (55%), Gaps = 74/310 (23%)
Query: 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
G+IT I +A F M+ +P+PP +SSF +L LAK KHY V L+ ++ +G+
Sbjct: 73 GNITAI---QAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGIS 128
Query: 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------- 114
PD T +IL+NC C + RV G V+ ILR + PD+VT+T+LIK
Sbjct: 129 PDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALL 188
Query: 115 -------VCKPDAITYNTIIDGLCKQGFV------------------------------- 136
C P+AITY T++ GLC+ G +
Sbjct: 189 FTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSII 248
Query: 137 ----------DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
D+A++LF +MK + + P V++YTS++ W EAKRLF EM++QGV
Sbjct: 249 IDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGV 300
Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
QPNVVTFNV++D LCK GK+ EA LL++MIQ G+ P+ TYN+L++GFCL G +N A+E
Sbjct: 301 QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 360
Query: 247 LFVSMESMGC 256
LFVSM S GC
Sbjct: 361 LFVSMPSKGC 370
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 161/269 (59%), Gaps = 33/269 (12%)
Query: 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
IT +AL FD M+R + SFN++LG LAK KHY V SL+K+++ GL P+ +T
Sbjct: 75 ITSTQALQFFDLMMR------SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFT 128
Query: 74 HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
+ILINC C + RV G + I+R + PDVVT+TSLIK
Sbjct: 129 LNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQ 188
Query: 116 ---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------NVKPNVVTYTSVIRGFC 166
C P+ +TY T+I GLC+ G ++ A +L +M + N KPN+ +Y +I C
Sbjct: 189 KLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELC 248
Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
W EAKRLF EM+DQGV+P+VVTF+ ++D LCK G + EA L+ M+ G+ PD F
Sbjct: 249 KIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLF 308
Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
T+ +L++GFCL G ++ AKELF+SM S G
Sbjct: 309 TFTSLIEGFCLVGDLDSAKELFLSMPSKG 337
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/280 (41%), Positives = 164/280 (58%), Gaps = 38/280 (13%)
Query: 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
+T AL F M+R P+P +SSFN +L LAK KHY V SL+ ++ +GL D T
Sbjct: 48 VTATHALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106
Query: 74 HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
+IL+NC C + R+ GF ILR ++P++VT+ +LIK
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166
Query: 116 ---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------NVKPNVVTYTSVIRGFC 166
C PD +TY T+I GLC G ++ A +L +M + N KPNV+TY ++ G C
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226
Query: 167 YANDWNEAKRLFIEM----------MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
+EAK+LF EM +DQG+QP++VTFNV++D LCK GK+ EA LL +M
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVM 286
Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
I+ G+ PD TYN+L++GFC+ G +N A+ELFVSM S GC
Sbjct: 287 IESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGC 326
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 18/256 (7%)
Query: 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL 62
L++ G+I I +A FD M+R HP PP +SSFN +LG LAK HY + SL+ ++
Sbjct: 61 LRNCKTGNIDVI---QAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNKM 116
Query: 63 NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122
GL PDL+T +IL NC C + RVS G + ILR + PD+VT+ +LIK
Sbjct: 117 RLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKG------- 169
Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
+ GLCK G D+AKE+F +MK + + PNV++Y+S++ GFC A E+KRLF EM+
Sbjct: 170 ----LYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMV 225
Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL---MIQHGVRPDAFTYNTLLDGFCLTG 239
DQGVQPN+V FNV++D LCK GK+ + SS L M G + +Y L++G+C
Sbjct: 226 DQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIW 285
Query: 240 RVNHAKELFVSMESMG 255
+V A L+ M +G
Sbjct: 286 KVEEAMNLYNEMPQVG 301
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/195 (51%), Positives = 138/195 (70%), Gaps = 3/195 (1%)
Query: 65 TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAITY 123
GL PDL+T +IL NC C + RVS G + ILR + PD+VT+ +LIK +C+ I+
Sbjct: 4 AGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISV 63
Query: 124 NT--IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
T IIDGLCK G D+AKE+F +MK + + PNV++Y+S++ GFC A E+KRLF EM
Sbjct: 64 ATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEM 123
Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
+DQGVQPN+V FNV++D LCK GK+ EA LL++ IQ G+ D TYN+L+DGFC G +
Sbjct: 124 VDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDL 183
Query: 242 NHAKELFVSMESMGC 256
+ A++LF+SM S GC
Sbjct: 184 SSARKLFLSMPSKGC 198
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.878 | 0.389 | 0.341 | 3.8e-36 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.875 | 0.356 | 0.365 | 6.2e-36 | |
| TAIR|locus:2026172 | 485 | NG1 "novel gene 1" [Arabidopsi | 0.800 | 0.422 | 0.378 | 9.2e-36 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.878 | 0.354 | 0.354 | 1.4e-35 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.878 | 0.366 | 0.35 | 1.5e-35 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.921 | 0.430 | 0.358 | 4e-35 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.878 | 0.357 | 0.345 | 8.2e-35 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.878 | 0.357 | 0.35 | 1e-34 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.878 | 0.349 | 0.354 | 2.5e-34 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.875 | 0.355 | 0.344 | 3.8e-34 |
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 3.8e-36, P = 3.8e-36
Identities = 82/240 (34%), Positives = 136/240 (56%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A+ + D M+ M P ++ ++ G NK + V +L R+ G P+L T+ +
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV-ALVDRMVQRGCQPNLVTYGV 230
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
++N CK G + F +L ++ K+ + + + Y+T+ID LCK
Sbjct: 231 VVNGLCKRGDIDLAFNLLNKM-------------EAAKI-EANVVIYSTVIDSLCKYRHE 276
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
D A LF +M++K V+PNV+TY+S+I C W++A RL +M+++ + PNVVTFN +
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+D K GK+ EA L D MI+ + PD FTY++L++GFC+ R++ AK +F M S C
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 6.2e-36, P = 6.2e-36
Identities = 88/241 (36%), Positives = 135/241 (56%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
+EA+ + D M M P V+ FN ++ G NK + V +L R+ + G PDL+T+
Sbjct: 167 SEAVALVDQMFVMEYQPNTVT-FNTLIHGLFLHNKASEAV-ALIDRMVARGCQPDLFTYG 224
Query: 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
++N CK G + +L ++ + DVV +T TIID LC
Sbjct: 225 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYT--------------TIIDALCNYKN 270
Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
V+ A LF +M +K ++PNVVTY S+IR C W++A RL +M+++ + PNVVTF+
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330
Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
++D K GK+ EA L D MI+ + PD FTY++L++GFC+ R++ AK +F M S
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 256 C 256
C
Sbjct: 391 C 391
|
|
| TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 83/219 (37%), Positives = 124/219 (56%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
S+NI++ CL + + LS+ ++ G PD+ T S LIN FC+ RV ++ ++
Sbjct: 106 SYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM 165
Query: 98 LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
F PDVV YNTIIDG CK G V+ A ELF +M+ V+ + VT
Sbjct: 166 EEMGFRPDVVI--------------YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVT 211
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
Y S++ G C + W++A RL +M+ + + PNV+TF ++D K GK EA L + M
Sbjct: 212 YNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMT 271
Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+ V PD FTYN+L++G C+ GRV+ AK++ M + GC
Sbjct: 272 RRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGC 310
|
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| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 1.4e-35, P = 1.4e-35
Identities = 85/240 (35%), Positives = 133/240 (55%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A+ + D M+ M P ++ ++ G NK + V +L R+ G P+L T+ +
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV-ALVDRMVQRGCQPNLVTYGV 230
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
++N CK G +L ++ + DVV F NTIID LCK V
Sbjct: 231 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF--------------NTIIDSLCKYRHV 276
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
D A LF +M+ K ++PNVVTY+S+I C W++A +L +M+++ + PN+VTFN +
Sbjct: 277 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 336
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+D K GK EA L D MI+ + PD FTYN+L++GFC+ R++ AK++F M S C
Sbjct: 337 IDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 396
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| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 84/240 (35%), Positives = 134/240 (55%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA+ + D M+ M P V+ ++ G NK + V +L +R+ G PDL T+
Sbjct: 152 SEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAV-ALVERMVVKGCQPDLVTYGA 210
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
+IN CK G +L ++ + K+ + D + Y+T+ID LCK V
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKG-------------KI-EADVVIYSTVIDSLCKYRHV 256
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
D A LF +M +K ++P+V TY+S+I C W++A RL +M+++ + PNVVTFN +
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSL 316
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+D K GK+ EA L D MIQ + P+ TYN+L++GFC+ R++ A+++F M S C
Sbjct: 317 IDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 376
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| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 91/254 (35%), Positives = 138/254 (54%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL + DI N+A+ +F M++ P P V FN +L + K K YD V+SL K
Sbjct: 54 ERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPSIVD-FNRLLSAIVKLKKYDVVISLGK 109
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
++ G+ DLYT +I+INCFC +VS +LG++L+ + PD VT SL+
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLV------- 162
Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
+G C++ V A L KM + KP++V Y ++I C N+A F E
Sbjct: 163 -------NGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 215
Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
+ +G++PNVVT+ +++ LC + + +A+ LL MI+ + P+ TY+ LLD F G+
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
Query: 241 VNHAKELFVSMESM 254
V AKELF M M
Sbjct: 276 VLEAKELFEEMVRM 289
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 8.2e-35, P = 8.2e-35
Identities = 83/240 (34%), Positives = 134/240 (55%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A+ + M+ M P + FN ++ L ++ ++L R+ G PDL T+ I
Sbjct: 168 SDAVSLVGQMVEMGYQPDSFT-FNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGI 226
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
++N CK G + +L ++ + K+ +P + YNTIID LC V
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEQG-------------KI-EPGVVIYNTIIDALCNYKNV 272
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
+ A LF +M +K ++PNVVTY S+IR C W++A RL +M+++ + PNVVTF+ +
Sbjct: 273 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 332
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+D K GK+ EA L D MI+ + PD FTY++L++GFC+ R++ AK +F M S C
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 392
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| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 1.0e-34, P = 1.0e-34
Identities = 84/240 (35%), Positives = 130/240 (54%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A+ + D M+ M P + ++ G NK + V +L ++ G PDL T+
Sbjct: 170 SDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV-ALVDQMVQRGCQPDLVTYGT 228
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
++N CK G + +L ++ + +VV F NTIID LCK V
Sbjct: 229 VVNGLCKRGDIDLALNLLNKMEAARIKANVVIF--------------NTIIDSLCKYRHV 274
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
+ A +LF +M+ K ++PNVVTY S+I C W++A RL M+++ + PNVVTFN +
Sbjct: 275 EVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNAL 334
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+D K GK+ EA L + MIQ + PD TYN L++GFC+ R++ AK++F M S C
Sbjct: 335 IDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDC 394
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| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 2.5e-34, P = 2.5e-34
Identities = 85/240 (35%), Positives = 132/240 (55%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EAL + D M+ M P ++ ++ G K D V+ L R+ TG P+ T+
Sbjct: 175 SEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVV-LIDRMVETGFQPNEVTYGP 233
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
++N CK G+ + +LR ++ K DA+ Y+ IIDGLCK G +
Sbjct: 234 VLNVMCKSGQTALAM----ELLRKMEERNI----------KLDAVKYSIIIDGLCKDGSL 279
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
D A LF +M+ K K +++TY ++I GFC A W++ +L +M+ + + PNVVTF+V+
Sbjct: 280 DNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVL 339
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+D K GK+ EA LL M+Q G+ P+ TYN+L+DGFC R+ A ++ M S GC
Sbjct: 340 IDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGC 399
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 3.8e-34, P = 3.8e-34
Identities = 83/241 (34%), Positives = 134/241 (55%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
+EA+ + D M P V+ FN ++ G NK + ++L R+ + G PDL T+
Sbjct: 168 SEAVALVDQMFVTGYQPNTVT-FNTLIHGLFLHNKASEA-MALIDRMVAKGCQPDLVTYG 225
Query: 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
+++N CK G F +L ++ + P V + YNTIIDGLCK
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGV--------------LIYNTIIDGLCKYKH 271
Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
+D A LF +M+ K ++PNVVTY+S+I C W++A RL +M+++ + P+V TF+
Sbjct: 272 MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331
Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
++D K GK+ EA L D M++ + P TY++L++GFC+ R++ AK++F M S
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 391
Query: 256 C 256
C
Sbjct: 392 C 392
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023872001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (660 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 256 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-23 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 3e-23
Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 47 AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS-CFTPD 105
AK+ D + +F + + G+ +++T LI+ + G+V+ F G I+RS PD
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG-IMRSKNVKPD 541
Query: 106 VVTFTSLIKVC-----------------------KPDAITYNTIIDGLCKQGFVDKAKEL 142
V F +LI C PD IT ++ G VD+AKE+
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601
Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
+ + + N+K YT + DW+ A ++ +M +GV+P+ V F+ ++D
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
G +D+A +L + G++ +Y++L+ A EL+ ++S+
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 2e-20
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
PD +TYNT+IDG CK+G V++A +LF +MK + +KPNV TY+ +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 8e-19
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
P+VVT+N ++D CK GK++EA L + M + G++P+ +TY+ L+DG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 3e-18
Identities = 53/228 (23%), Positives = 105/228 (46%), Gaps = 24/228 (10%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
+A C+FD M ++N ML A + + + L L+ + +G+ D +T SI+
Sbjct: 277 DARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
I F ++ + H ++R+ F D+V T+L+ D K G ++
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV--------------DLYSKWGRME 377
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
A+ +F +M KN+ +++ ++I G+ +A +F M+ +GV PN VTF ++
Sbjct: 378 DARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 198 DELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCLTGRVNHA 244
+G ++ + M + H ++P A Y +++ G ++ A
Sbjct: 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 4e-17
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
P+VVTY ++I G+C EA +LF EM +G++PNV T+++++D LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 1e-15
Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 22/216 (10%)
Query: 23 FDYMLRMHPSPPPVSSFNIMLGCL----AKNKHYDTVLSLFKRLNSTGL--FPDLYTHSI 76
FD + M P+ +I +G L A D +++ ++ + P++YT I
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT--I 619
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
+N + G + + + PD V F++L+ V G +
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG--------------HAGDL 665
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
DKA E+ + + +K V+Y+S++ A +W +A L+ ++ ++P V T N +
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
+ LC+ ++ +A +L M + G+ P+ TY+ LL
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 2e-14
Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 66/269 (24%)
Query: 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH-SILINCF----CKMGRVSHG 90
+ S+N+++G AK ++D L L+ R+ G+ PD+YT +L C GR H
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
Query: 91 FVVLGRILRSCFTPDVVTFTSLI-----------------KVCKPDAITYNTIIDGLCKQ 133
VV R F DV +LI ++ + D I++N +I G +
Sbjct: 212 HVV-----RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266
Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVI---------------------RGFC------ 166
G + ELF M++ +V P+++T TSVI GF
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 167 --------YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
W EA+++F M + + V++ ++ KNG D+A LM Q
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
V PD T ++L G ++ +L
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKL 411
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 7e-13
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 103 TPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGFVDKAKE 141
P + TF L+ VC K D Y T+I K G VD E
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
+F +M + V+ NV T+ ++I G A +A + M + V+P+ V FN ++
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 202 KNGKMDEASSLLDLMI--QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
++G +D A +L M H + PD T L+ G+V+ AKE++ +
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-11
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 21/216 (9%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-HSILINCFCKMGRVSHGFVVLGR 96
S+ M+ KN D L + + + PD T S+L C C +G + G +
Sbjct: 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC-LGDLDVGVKLHEL 414
Query: 97 ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
R V + N +I+ K +DKA E+F + +K+V +
Sbjct: 415 AERKGLISYV--------------VVANALIEMYSKCKCIDKALEVFHNIPEKDV----I 456
Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
++TS+I G N EA +F M ++PN VT + + G + + +
Sbjct: 457 SWTSIIAGLRLNNRCFEA-LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515
Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
++ G+ D F N LLD + GR+N+A F S E
Sbjct: 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE 551
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.8 bits (136), Expect = 5e-11
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
KPD +TYNT+IDGLC+ G VD+A EL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-10
Identities = 66/267 (24%), Positives = 109/267 (40%), Gaps = 45/267 (16%)
Query: 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
GD+ + A +FD M R S+N M+ +N L LF + +
Sbjct: 236 GDVVS-----ARLVFDRMPRRD-----CISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 69 PDLYTHSILINCFCKM------GRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------- 115
PDL T + +I+ C++ GR HG+VV ++ F DV SLI++
Sbjct: 286 PDLMTITSVISA-CELLGDERLGREMHGYVV-----KTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 116 -----------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
K DA+++ +I G K G DKA E + M+ NV P+ +T SV+
Sbjct: 340 GEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
D + +L +G+ VV N +++ K +D+A + + D
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI----PEKD 454
Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSM 251
++ +++ G L R A F M
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQM 481
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 2e-09
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
P V ++N ++ K + L LF + G+ P++YT+SILI+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 2e-09
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
+G++P+VVT+N ++D LC+ G++DEA LLD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 52/219 (23%), Positives = 87/219 (39%), Gaps = 28/219 (12%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF--VVLG 95
S+ ++G L +Y +LF+ + D + F M R S G G
Sbjct: 191 SWGTIIGGLVDAGNYREAFALFREM--WEDGSDAEPRT-----FVVMLRASAGLGSARAG 243
Query: 96 RILRSCFTPDVV---TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
+ L C V TF S C +ID K G ++ A+ +F M +K
Sbjct: 244 QQLHCCVLKTGVVGDTFVS----C--------ALIDMYSKCGDIEDARCVFDGMPEKTT- 290
Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
V + S++ G+ EA L+ EM D GV + TF++++ + ++ A
Sbjct: 291 ---VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
+I+ G D L+D + GR+ A+ +F M
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-09
Identities = 50/235 (21%), Positives = 99/235 (42%), Gaps = 37/235 (15%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS----TGLFPDLYT 73
EAL F ML + P V+ + C L K +++ TG+ D +
Sbjct: 473 EALIFFRQML-LTLKPNSVTLIAALSACARIG-----ALMCGKEIHAHVLRTGIGFDGFL 526
Query: 74 HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
+ L++ + + GR+++ + + + D +++N ++ G
Sbjct: 527 PNALLDLYVRCGRMNYAW-------------------NQFNSHEKDVVSWNILLTGYVAH 567
Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVT 192
G A ELF +M + V P+ VT+ S++ + + F M ++ + PN+
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
+ ++D L + GK+ EA + ++ M + PD + LL+ C R++ EL
Sbjct: 628 YACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA-C---RIHRHVEL 675
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 5e-09
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
G++PD TYNTL+DG C GRV+ A EL ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-09
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
K+ + D ++N ++ G K G+ D+A L+ +M V+P+V T+ V+R D
Sbjct: 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205
Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
+ + ++ G + +V N ++ K G + A + D M R D ++N ++
Sbjct: 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMIS 261
Query: 234 GFCLTGRVNHAKELFVSM 251
G+ G ELF +M
Sbjct: 262 GYFENGECLEGLELFFTM 279
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-08
Identities = 20/35 (57%), Positives = 30/35 (85%)
Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
+TYNT+IDGLCK G V++A ELF +MK++ ++P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 1e-07
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
K +KP+VVTY ++I G C A +EA L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-07
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
+TYN++I G CK G +++A ELF +MK+K V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 2e-07
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
PD TYNTL+DG+C G+V A +LF M+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI 34
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 8e-07
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
VTY ++I G C A EA LF EM ++G++P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 1e-06
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116
PD+ T++ LI+ +CK G+V + + + P+V T++ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 25/175 (14%)
Query: 98 LRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGFV 136
FT T+ +L++ C +PD N ++ K G +
Sbjct: 115 AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
A+ LF +M ++N+ ++ ++I G A ++ EA LF EM + G TF V+
Sbjct: 175 IDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
+ G L +++ GV D F L+D + G + A+ +F M
Sbjct: 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 1e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
VT+N ++D LCK G+++EA L M + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 8e-06
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
VT+N ++ CK GK++EA L M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 8e-06
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
+ TY +++ A D + A + EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 1e-05
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
TYNTL+DG C GRV A ELF M+ G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 1e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
VTY S+I G+C A EA LF EM ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 2e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
TYN+L+ G+C G++ A ELF M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 33 PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
S++ ++G + K++ L L++ + S L P + T + LI C+ ++
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740
Query: 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
VL + R P+ +T++ L+ + ++ D +L + K+ +K
Sbjct: 741 VLSEMKRLGLCPNTITYSILLVASE--------------RKDDADVGLDLLSQAKEDGIK 786
Query: 153 PNVVTYTSVIRGFC 166
PN+V + G C
Sbjct: 787 PNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 6e-05
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
+ T+N ++ L K G D A ++L+ M G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 7e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
TYN ++ L K G D A + +MK +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 2e-04
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 66 GLFPDLYTHSILINCFCKMGRVSHGFVVL 94
GL PD+ T++ LI+ C+ GRV +L
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.001
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV 106
T++ LI+ CK GRV + + PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
++N ++ L K + L LFK + G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.82 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.65 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.64 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.63 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.62 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.61 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.59 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.55 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.54 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.52 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.47 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.46 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.4 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.38 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.36 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.35 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.34 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.34 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.33 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.33 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.32 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.3 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.28 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.21 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.18 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.16 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.12 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.11 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.11 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.08 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.07 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.07 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.06 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.06 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.01 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.0 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.99 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.96 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.96 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.96 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.95 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.93 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.92 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.91 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.9 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.89 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.89 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.84 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.82 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.81 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.74 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.73 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.72 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.69 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.69 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.68 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.65 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.62 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.61 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.58 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.58 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.57 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.57 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.55 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.54 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.54 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.54 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.49 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.47 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.46 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.45 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.42 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.42 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.41 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.4 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.4 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.37 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.36 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.36 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.36 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.34 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.32 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.32 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.29 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.28 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.28 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.27 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.26 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.2 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.19 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.19 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.18 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.18 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.14 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.14 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.13 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.11 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.11 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.11 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.1 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.09 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.02 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.02 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.99 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.94 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.9 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.89 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.89 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.87 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.87 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.86 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.85 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.82 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.82 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.82 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.79 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.79 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.78 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.74 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.73 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.69 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.67 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.62 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.57 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.52 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.49 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.47 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.38 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.37 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.36 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.26 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.23 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.23 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.22 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.21 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.17 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.06 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.04 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.99 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.95 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.94 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.91 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.84 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.77 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.76 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.67 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.63 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.61 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.6 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.55 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.52 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.5 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.49 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.45 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.4 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.35 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.04 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.04 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.97 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.95 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.89 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.89 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.82 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.82 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 95.77 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.7 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.66 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.64 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.62 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.6 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.55 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.49 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.44 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.43 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 95.4 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.4 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.28 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 95.25 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 95.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.13 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.89 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.89 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.76 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.59 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.59 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.49 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 94.41 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.38 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.27 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.15 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.02 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.99 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.95 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.93 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.93 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.79 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.79 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.77 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.42 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.42 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.41 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.28 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 93.24 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.19 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.04 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.02 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.99 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.95 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.9 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 92.82 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.81 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.72 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.71 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.54 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.44 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 92.37 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.26 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.13 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.98 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.95 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.94 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.93 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.68 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 91.64 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.49 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.35 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.14 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.06 | |
| PF14689 | 62 | SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do | 90.86 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 90.68 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.63 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 90.31 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.19 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 90.15 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.93 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.76 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.72 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.68 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.54 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 89.46 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.32 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.89 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.27 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.24 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.1 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.97 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.75 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.34 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.13 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.02 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.76 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 85.65 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 85.65 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.14 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.93 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.15 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 84.12 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 83.52 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.41 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 82.83 | |
| COG0735 | 145 | Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani | 82.71 | |
| PF14689 | 62 | SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do | 82.47 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 82.47 | |
| COG0735 | 145 | Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani | 82.4 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 82.21 | |
| cd00280 | 200 | TRFH Telomeric Repeat binding Factor or TTAGGG Rep | 82.15 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.04 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 81.7 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.55 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 81.49 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 81.44 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.33 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 80.73 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 80.64 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 80.47 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 80.46 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 80.06 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=306.77 Aligned_cols=247 Identities=21% Similarity=0.320 Sum_probs=152.4
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
.+|++.|++++|.++|++|.+.+.. ||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 3455556666666666666555554 566666666666666666666666666666666666666666666666666666
Q ss_pred chHHHHHHHHHh--cCCCCchhhHHhhhh---------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 88 SHGFVVLGRILR--SCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 88 ~~a~~~~~~~~~--~~~~~~~~~~~~ll~---------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
++|.++|++|.. .|+.|+..+|+.++. ++.|+..+|+.++.+|++.|++++|..+|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666666654 355566666665554 335555666666666666666666666666
Q ss_pred HHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047518 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 224 (256)
+|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 225 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 6666666666666666666666666666555
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=304.79 Aligned_cols=249 Identities=22% Similarity=0.386 Sum_probs=240.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
..+|++.|+++.|.++|+.|.+.|.. ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 34678899999999999999999887 99999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhh-----------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIK-----------------------VCKPDAITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
+++|.++|++|.+.|+.||..+|+.++. ++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999987 24789999999999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
+.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
+..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999988764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=275.37 Aligned_cols=241 Identities=20% Similarity=0.346 Sum_probs=174.4
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
..|.+.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|.+.|..
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 456667777777777777632 577777777777777777777777777777777777777777777777777777
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhh-----------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
+.+.+++..+.+.|+.|+..+++.++. ...+|..+|+.++.+|++.|++++|..+|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 777777777777777777777777665 346788999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH-------------------------------HHHHH
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN-------------------------------VIMDE 199 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------------~ll~~ 199 (256)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++ .+|.+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999998888888887666555554 44444
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555555543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=273.62 Aligned_cols=225 Identities=24% Similarity=0.399 Sum_probs=200.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+..|.+.|++++|.++|+.|.. +|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4578899999999999999842 68999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhh-----------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+++|.+++..|.+.|+.|+..+++.++. ...+|..+||.||.+|++.|+.++|.++|++|.+.
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887 34689999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~ 497 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMW 497 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHH
Confidence 9999999999999999999999999999999985 588999999999999999999999998888765 344555555
Q ss_pred HHHHHHHHhcC
Q 047518 229 NTLLDGFCLTG 239 (256)
Q Consensus 229 ~~l~~~~~~~g 239 (256)
+.++.+|...|
T Consensus 498 ~~Ll~a~~~~g 508 (697)
T PLN03081 498 AALLTACRIHK 508 (697)
T ss_pred HHHHHHHHHcC
Confidence 44444443333
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=271.58 Aligned_cols=206 Identities=25% Similarity=0.304 Sum_probs=182.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
...|.+.|++++|.++|++|. . ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----R-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----C-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 456889999999999999984 3 78899999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhh-----------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.+.|.+++..+.+.|+.|+..+++.++. ...||..+|+.++.+|.+.|++++|..+|++|.+.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987 34688999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 99999999988888888888888888888888888777777777777777777777776666666654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=271.95 Aligned_cols=240 Identities=24% Similarity=0.361 Sum_probs=220.2
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
..|.+.|+++.|.++|++|. . ||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|...+++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~----~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP----E-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC----C-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 45688999999999999994 3 799999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhh-----------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
..+.+++..+.+.|+.|+..+++.++. ...+|..+||.++.+|++.|++++|..+|.+|...|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999987 346899999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (256)
+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999999999999999999999999998888888888875 467778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 231 LLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 231 l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
++.+|++.|++++|.++|++|.+.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888877764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=146.14 Aligned_cols=244 Identities=14% Similarity=0.063 Sum_probs=175.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCC--CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPP--PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
+..+...|++++|..+++.+......++ ....+..+...|.+.|+++.|..+|+++.+.. +++..++..++..+...
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 154 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQE 154 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHh
Confidence 4455677888888888887776543211 12456777777788888888888888877653 34566777777788888
Q ss_pred CCcchHHHHHHHHHhcCCCCchh----hHHhhh--------------------hhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVV----TFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
|++++|.+.++.+.+.+-.+... .+..+. ...+.+...+..+...+.+.|++++|.
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888887777654222110 111110 022334567777888899999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
..|+++...+......++..+..+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+.
T Consensus 235 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~- 311 (389)
T PRK11788 235 EALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR- 311 (389)
T ss_pred HHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 99999887644333566788888899999999999999998876 456666688888899999999999999888775
Q ss_pred CCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHhcC
Q 047518 221 VRPDAFTYNTLLDGFCL---TGRVNHAKELFVSMESMG 255 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g 255 (256)
.|+...+..++..+.. .|+.+++..++++|.+++
T Consensus 312 -~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 312 -HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred -CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 5788888877777664 558888999998888765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=141.00 Aligned_cols=242 Identities=15% Similarity=0.099 Sum_probs=174.9
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHh
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTHSILINCFCK 83 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 83 (256)
|..+...|++++|+..|+++.+.+|. +..++..+...+...|++++|..+++.+...+..++ ..++..+...|..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE--TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999997664 677899999999999999999999999987643222 2567888999999
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhh--------------------hcCCC-----HHHHHHHHHHHHhcCCHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------VCKPD-----AITYNTIIDGLCKQGFVDK 138 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--------------------~~~~~-----~~~~~~l~~~~~~~~~~~~ 138 (256)
.|++++|..+|+++.+.. .++..++..+.. ..+.+ ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998752 222333332221 11111 1234556667777788888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
|...|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888887776542 245566677777778888888888888877653332345677777888888888888888888776
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
. .|+...+..++..+.+.|++++|.++++++.+.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5 455566677777888888888888888776653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=142.25 Aligned_cols=236 Identities=14% Similarity=0.095 Sum_probs=156.6
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
...|++++|...|+++.+..|. +..++..++..+...|+++.|.++++.+.+.+ +++...+..+...+...|++++|
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPD--NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 3445555555555555443332 34445555555555555555555555554443 23445566666666677777777
Q ss_pred HHHHHHHHhcCCCCchh------------------hHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047518 91 FVVLGRILRSCFTPDVV------------------TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (256)
...|+++.+.+..+... .+...+...+.+...+..+...|...|++++|...|+++.+..+
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p- 801 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP- 801 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-
Confidence 77777666643222110 01111223455677777777888888888888888888877653
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 232 (256)
.+..+++.+...+...|+ .+|+..++++.... +-+..++..+...+...|++++|...++++.+.+ +.+..++..+.
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 878 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLA 878 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHH
Confidence 366777777888888888 77888888877653 3345667778888889999999999999998875 34888899999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 047518 233 DGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.++.+.|++++|.+++++|++
T Consensus 879 ~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 879 LALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999998864
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-17 Score=139.68 Aligned_cols=236 Identities=10% Similarity=0.111 Sum_probs=121.3
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
+...|++++|...|+++.+.++. +...+..++..+.+.|++++|..+++.+.+.. +.+..+|..+..++...|++++
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQ--EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34455555555555555554432 34445555555555555555555555554432 2344455555555555555555
Q ss_pred HHHHHHHHHhcCCCCchhhHHhh--------------------hhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSL--------------------IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~l--------------------l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
|...|+++.+..- .+...+..+ +...+.+..++..++..+...|++++|..+++.+...
T Consensus 620 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555544310 111111111 1122334455555555666666666666666655554
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
+. .+...+..+...+...|++++|...++.+...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+.
T Consensus 699 ~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 699 HP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred Cc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 32 244455555555556666666666666655542 333445555555555666666665555555442 33455555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 047518 230 TLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+...|...|++++|.+.|+++.+
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 555555556666666666555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-15 Score=124.92 Aligned_cols=243 Identities=14% Similarity=0.133 Sum_probs=184.4
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.+......|++++|+..|+++....|. +...+..+...+.+.|+++.|...++++.+.. +.+...+..+..++...|
T Consensus 82 l~~~~l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 82 WVISPLASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMD 158 (656)
T ss_pred HhhhHhhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 345567789999999999999987775 66778888999999999999999999998763 335668888889999999
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHh------------------hhhh-cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTS------------------LIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~------------------ll~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
++++|...++.+....-.+....... ++.. ..++...+..+..++...|++++|...++..
T Consensus 159 ~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 159 KELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988766432221111111 1111 1123334455567788889999999999988
Q ss_pred HhCCCCCchHHHHHHHHHHhccCCHHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047518 147 KDKNVKPNVVTYTSVIRGFCYANDWNE----AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222 (256)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (256)
...... +...+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..... +
T Consensus 239 l~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P 315 (656)
T PRK15174 239 LARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-P 315 (656)
T ss_pred HhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 876533 56677778888888898885 788888888764 3356788888999999999999999999988763 3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 223 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+...+..+..++.+.|++++|.+.++++.+.
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45667778888899999999999999888754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-15 Score=124.33 Aligned_cols=224 Identities=13% Similarity=0.005 Sum_probs=157.9
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
+...|++++|+..|++.....|. +...|..+...+...|++++|...|+...+.. +.+..+|..+...+...|++++
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPR--VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 44566777777777776665443 44556666666666777777777777665553 2345566666666777777777
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 169 (256)
|...|++.++. .+.+...+..+..++.+.|++++|+..|+....... .+...++.+...+...|
T Consensus 418 A~~~~~kal~l---------------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 418 AGKDYQKSIDL---------------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHc---------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcc
Confidence 77777666653 133456677788889999999999999998887632 35678888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNV------VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (256)
++++|...++.........+. ..++..+..+...|++++|..++++..... +.+...+..+...+.+.|++++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 999999999998875322111 112222333445789999999999988763 3345578889999999999999
Q ss_pred HHHHHHHHHh
Q 047518 244 AKELFVSMES 253 (256)
Q Consensus 244 a~~~~~~m~~ 253 (256)
|+++|++..+
T Consensus 561 Ai~~~e~A~~ 570 (615)
T TIGR00990 561 ALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-15 Score=122.96 Aligned_cols=240 Identities=11% Similarity=-0.016 Sum_probs=186.1
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+..+...|++++|+..|+++....|. +...+..+...+...|++++|...++.+...... +...+..+ ..+...|+
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~--~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSG--NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCC
Confidence 45567889999999999999887664 6778888999999999999999999988665322 33333333 34778899
Q ss_pred cchHHHHHHHHHhcCCCCchhhH--------------------HhhhhhcCCCHHHHHHHHHHHHhcCCHHH----HHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTF--------------------TSLIKVCKPDAITYNTIIDGLCKQGFVDK----AKEL 142 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~--------------------~~ll~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~ 142 (256)
+++|...++.+.+..-.++.... ...+...+.+...+..+...+...|++++ |...
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 99999999888775322222111 11112335567888899999999999986 8999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047518 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222 (256)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (256)
|++.....+. +...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...++.+... .
T Consensus 273 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~ 348 (656)
T PRK15174 273 WRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--K 348 (656)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 9999887543 67789999999999999999999999999874 335667888899999999999999999999875 3
Q ss_pred CCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 223 PDA-FTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 223 ~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
|+. ..+..+..++...|+.++|.+.|++..+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 443 34444567889999999999999988754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=119.43 Aligned_cols=240 Identities=13% Similarity=0.103 Sum_probs=88.5
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.+..+...|++++|+++++.......++.+...|..+...+...++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 466777888888888888654443312145556666666777778888888888888766422 44556666655 5677
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhh----------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
++++|.+++....+.. +++..+...+. ..+.+...|..+...+.+.|++++|+..+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777766655432 12221111111 22456777888888888888888888888
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
++..+..+. +......++..+...|+.+++..+++...+.. +.|...+..+..++...|+.++|...|++..+.. +.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 888876433 56677788888888888888888888877663 4455677888888888899999999998888752 45
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
|+.....+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 77888888888888999998888877654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=118.86 Aligned_cols=211 Identities=16% Similarity=0.167 Sum_probs=100.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh-----
Q 047518 41 IMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----- 114 (256)
Q Consensus 41 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~----- 114 (256)
.+...+.+.|+++.|++++....... .+.+...|..+...+...++++.|+..++++...+.. ++..+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 56888899999999999997655443 2345566677777888899999999999999876432 2222222222
Q ss_pred -------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHhccCCHHHHHHHHHH
Q 047518 115 -------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180 (256)
Q Consensus 115 -------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 180 (256)
...+++..+..++..+.+.++++++..++..+.... .+.+...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 123566777888899999999999999999977543 345778888899999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 181 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+.. +.|......++..+...|+.+++..+++...+.. +.++..+..+..+|...|+.++|+.++++..+.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 99874 2357788899999999999999999998887753 556677889999999999999999999987763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-14 Score=116.84 Aligned_cols=243 Identities=13% Similarity=0.067 Sum_probs=151.2
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
+...|..+.+.|++++|+..|++.....| +...|..+..+|.+.|+++.|+..++...+.. +.+...|..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34567788899999999999999988554 55678899999999999999999999998874 335668888999999
Q ss_pred hcCCcchHHHHHHHHHhcCC----------------------------CCc----h------------------------
Q 047518 83 KMGRVSHGFVVLGRILRSCF----------------------------TPD----V------------------------ 106 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~----------------------------~~~----~------------------------ 106 (256)
..|++++|+..|..+....- .|. .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999765543321100 000 0
Q ss_pred -----------------------------hhHHhhhhh---cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 047518 107 -----------------------------VTFTSLIKV---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 107 -----------------------------~~~~~ll~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
..+...+.. .+.....|..+...+...|++++|+..|+........ +
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence 000000000 0122334555566666677777777777766654321 3
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 155 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
...|..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 4455555666666666666666666665542 2234555555556666666666666666555542 2234444455555
Q ss_pred HHhcCChhHHHHHHHHHH
Q 047518 235 FCLTGRVNHAKELFVSME 252 (256)
Q Consensus 235 ~~~~g~~~~a~~~~~~m~ 252 (256)
+.+.|++++|+..+++..
T Consensus 443 ~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-13 Score=107.45 Aligned_cols=233 Identities=11% Similarity=0.081 Sum_probs=184.4
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
.+.|+++.|.+.|.++.+..+. +...........+...|+++.|...++.+.+.. +-+...+..+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~-~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADN-DQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHH
Confidence 5789999999999999774433 111222233678889999999999999998875 34677888999999999999999
Q ss_pred HHHHHHHHhcCCCCchh-------hHHhhh--------------------hhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 91 FVVLGRILRSCFTPDVV-------TFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-------~~~~ll--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
..++..+.+.+..++.. ++..++ ...+.++.....+...+...|+.++|..++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999876553221 111111 123457788889999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
.+..+. +|+.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|+...+. .|
T Consensus 287 ~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P 359 (398)
T PRK10747 287 LDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP 359 (398)
T ss_pred HHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 999885 3444322 3444456699999999999999874 346667889999999999999999999999985 79
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+...+..+...+.+.|+.++|.+++++-.
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999998754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-14 Score=101.16 Aligned_cols=230 Identities=10% Similarity=0.093 Sum_probs=186.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHh
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTHSILINCFCK 83 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 83 (256)
|-.+.-.+++++|.+.|-+|.+..+. +..+.-.|.+.|.+.|..++|+++.+.+.++.-.+. ......|..-|..
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 34456678999999999999996654 677788899999999999999999999987632211 2245566777888
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch----HHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV----VTYT 159 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 159 (256)
.|-++.|+.+|..+.+.+. .-..+...|+..|....+|++|+++-.++.+.+..+.. ..|.
T Consensus 120 aGl~DRAE~~f~~L~de~e---------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGE---------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred hhhhhHHHHHHHHHhcchh---------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 9999999999999988532 22345677899999999999999999999887655442 4567
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 047518 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (256)
-+...+....+.+.|..++.+..+.+ +..+..--.+.+.....|+++.|.+.++...+++...-+.+...|..+|.+.|
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 77777778889999999999998875 33555666778889999999999999999999876666778899999999999
Q ss_pred ChhHHHHHHHHHHhc
Q 047518 240 RVNHAKELFVSMESM 254 (256)
Q Consensus 240 ~~~~a~~~~~~m~~~ 254 (256)
+.++...++.++.+.
T Consensus 264 ~~~~~~~fL~~~~~~ 278 (389)
T COG2956 264 KPAEGLNFLRRAMET 278 (389)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999887653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-14 Score=122.71 Aligned_cols=241 Identities=14% Similarity=0.079 Sum_probs=185.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+..+...|++++|+..|++..+..|. +...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~--~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCC
Confidence 34456789999999999999998775 66778889999999999999999999998753 2344555555556677889
Q ss_pred cchHHHHHHHHHhcCCCCchhhH-------------------------HhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTF-------------------------TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (256)
.++|...++.+......++.... ..++...+.+...+..+...+.+.|++++|+.
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 99998888776443222221110 11122345667778889999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
.|+...+..+. +...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|.++++.+.....
T Consensus 625 ~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 625 AYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999987543 67888999999999999999999999887653 23456677788889999999999999999986432
Q ss_pred --CC---CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 222 --RP---DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 222 --~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+| +...+..+...+...|++++|++.|++..
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 22456666788899999999999998875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-13 Score=104.12 Aligned_cols=242 Identities=10% Similarity=-0.004 Sum_probs=181.4
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
....+.|+++.|.+.+++..+..+. +.....-.....+.+.|+++.|...++.+.+.. +-+..++..+...+...|++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 3345679999999999998765543 222233445778888999999999999998885 33667888999999999999
Q ss_pred chHHHHHHHHHhcCCCCchhh-------HHhhhh----------------hc----CCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 88 SHGFVVLGRILRSCFTPDVVT-------FTSLIK----------------VC----KPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~-------~~~ll~----------------~~----~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
+.|.+.+..+.+.+..+.... +...+. .. +.++..+..+...+...|++++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 999999999998865433321 111111 11 137889999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 141 ELFLKMKDKNVKPNVVTY-TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV--VTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.++++..+.........+ ..........++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+...
T Consensus 284 ~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 284 EIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 999999987433221111 112222244578889999998888762 2234 567788999999999999999999644
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
.....|+...+..+...+.+.|+.++|.+++++-.
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44457899999999999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-13 Score=96.71 Aligned_cols=201 Identities=11% Similarity=0.065 Sum_probs=167.0
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 4567888999999999999999999998764 3356788889999999999999999999998752
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.+...+..+...+...|++++|...+........ ......+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 96 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 173 (234)
T TIGR02521 96 -PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLL 173 (234)
T ss_pred -CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHH
Confidence 23455677888999999999999999999987532 2234567778888999999999999999998864 33566788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+...+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8999999999999999999998876 3556677778888899999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-13 Score=109.54 Aligned_cols=218 Identities=13% Similarity=0.079 Sum_probs=163.5
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHH---------ccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLA---------KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
.+++++|+..|++..+..|. +...|..+..++. ..+++++|...+++..+.. +.+...+..+...+..
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 45678999999999987765 5566766665544 2345789999999998875 3366788888888999
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (256)
.|++++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+..+. +...+..++.
T Consensus 351 ~g~~~~A~~~~~~Al~l~---------------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~ 414 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS---------------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLW 414 (553)
T ss_pred ccCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 999999999999998852 335667888899999999999999999999887554 2223333444
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChh
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 242 (256)
.+...|++++|...+++......+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| +
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~ 490 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--E 490 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--H
Confidence 56678999999999999887642224555777888889999999999999987664 344 334455556667766 4
Q ss_pred HHHHHHHHHHh
Q 047518 243 HAKELFVSMES 253 (256)
Q Consensus 243 ~a~~~~~~m~~ 253 (256)
+|...++++.+
T Consensus 491 ~a~~~l~~ll~ 501 (553)
T PRK12370 491 RALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-12 Score=110.55 Aligned_cols=216 Identities=11% Similarity=-0.016 Sum_probs=168.3
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 93 (256)
+++++|+..|.+.....| +......+...+.+.|++++|...|+++... +|+...+..+..++.+.|++++|..+
T Consensus 490 ~~~~eAi~a~~~Al~~~P---d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQP---DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CCcHHHHHHHHHHHHhCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 678888888888777553 3222333344556889999999999987654 44555566777788889999999999
Q ss_pred HHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHH
Q 047518 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173 (256)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 173 (256)
+++..+.. |+ +...+..+.....+.|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 565 l~qAL~l~--P~-------------~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 565 LQQAEQRG--LG-------------DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHHhcC--Cc-------------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 98888752 22 22233334445556799999999999998764 467888999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
|+..+++..... +.+...++.+..++...|++++|...++...+.. +-+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999874 3456788888889999999999999999998863 45677889999999999999999999998765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-13 Score=97.18 Aligned_cols=195 Identities=9% Similarity=0.047 Sum_probs=161.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+..+...|++++|...|++..+..|. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDPD--DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc
Confidence 45567889999999999999887654 67788899999999999999999999998775 3456778888999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|...+++..+.... ......+..+...+...|++++|...+.+....... +...+..+...+.
T Consensus 115 ~~~A~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 180 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLY-------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHHHhcccc-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHH
Confidence 99999999999874211 123445677888999999999999999999876433 5667888899999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999877 3446677778888889999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8e-14 Score=108.94 Aligned_cols=235 Identities=14% Similarity=0.164 Sum_probs=130.7
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
-+-..|+...|++.|++..+..|.- ...|-.|...|...+.+++|+..|.+..... +.....|..+...|...|.++
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkldP~f--~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKLDPNF--LDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcCCCcc--hHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHH
Confidence 3445677777777777777665542 3346667777777777777777666665442 223345555555566666666
Q ss_pred hHHHHHHHHHhcCCCCc---------------------hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 89 HGFVVLGRILRSCFTPD---------------------VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~---------------------~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
.|+..|++.++. .|+ ...|+..+..++....+.+.|..+|...|.++.|..+|....
T Consensus 304 lAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 304 LAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 666666655543 111 111222222333444555555666666666666666665555
Q ss_pred hCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H
Q 047518 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-A 225 (256)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 225 (256)
.-... -....+.|...|-+.|++++|+..+++.++- .|+ ...|+.+...|-..|+.+.|.+.+.+.... .|+ .
T Consensus 382 ~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~A 456 (966)
T KOG4626|consen 382 EVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFA 456 (966)
T ss_pred hhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHH
Confidence 43221 2344555666666666666666666666553 333 345555666666666666666666665543 232 3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 226 FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..++.|...|...|++.+|++-+++..+
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 4556666666666666666666655443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=115.06 Aligned_cols=225 Identities=10% Similarity=0.060 Sum_probs=152.2
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC-CHhhH-----------
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTH----------- 74 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~----------- 74 (256)
|..+...|++++|+..|++..+..|. +...+..+...+.+.|++++|+..|++..+..... ....|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45567889999999999999987765 77789999999999999999999999988764221 11112
Q ss_pred -HHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 75 -SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 75 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
......+.+.|++++|+..|+++.+. . +.+...+..+..++...|++++|++.|++..+....
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~--~-------------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~- 417 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV--D-------------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG- 417 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--C-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 12244677889999999999999885 2 234556777888888999999999999888775432
Q ss_pred chHHHHHHHH------------------------------------------HHhccCCHHHHHHHHHHHHHcCCCCcHH
Q 047518 154 NVVTYTSVIR------------------------------------------GFCYANDWNEAKRLFIEMMDQGVQPNVV 191 (256)
Q Consensus 154 ~~~~~~~li~------------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 191 (256)
+...+..+.. .+...|++++|...+++..+.. +-+..
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~ 496 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVW 496 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 3333333333 3344566666666666666553 12344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
.+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|++++|+..++++
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 55666666677777777777777666532 224444444444555666666666666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-14 Score=110.11 Aligned_cols=229 Identities=18% Similarity=0.128 Sum_probs=159.2
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCC-CCc-------------------------------ccHHHHHHHHHccCCh
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSP-PPV-------------------------------SSFNIMLGCLAKNKHY 52 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~-------------------------------~~~~~l~~~~~~~~~~ 52 (256)
..|.+|...+++++|..+|+.+.+..|.. .+. .+|-++..+|.-+++.
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh 437 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDH 437 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHH
Confidence 34677888899999999999888766531 223 3344444444444444
Q ss_pred HHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHH
Q 047518 53 DTVLSLFKRLNSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~ 131 (256)
+.|++.|++..+. .| ...+|+.+..-+....+++.|...|+..+.. + +.+-.+|-.|...|.
T Consensus 438 ~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~-----------~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 438 DTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----D-----------PRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----C-----------chhhHHHHhhhhhee
Confidence 4555544444443 22 3344444444444444444444444444331 1 222335556788999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
+.++++.|+-.|+...+.++. +.+....+...+.+.|+.++|+++++++.....+ |...--.-+..+...+++++|..
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred ccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHH
Confidence 999999999999999988765 6667777888889999999999999999987543 55555555677788999999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.++++.+. ++-+..+|..+...|.+.|+.+.|+.-|--+.+
T Consensus 579 ~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 579 ELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 99999985 344566788888999999999999987766654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-12 Score=102.29 Aligned_cols=213 Identities=12% Similarity=0.098 Sum_probs=166.7
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
-|..+|.++-|++.|++.+...|..| ..|+.|..++...|+..+|.+.|.+..... +......+.|...|...|.++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~--~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFP--DAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCch--HHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccch
Confidence 35677888888888888887766533 458888888888888888888888877663 224567778888888888888
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
.|..+|....+. .+.-...++.|...|-..|++++|+..|++.....+. -..+|+.+-..|-..
T Consensus 372 ~A~~ly~~al~v---------------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 372 EATRLYLKALEV---------------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHHhh---------------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHh
Confidence 888888877763 2334567899999999999999999999999875322 457899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhH
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 243 (256)
|+.+.|.+.+.+.+..+ +.-...++.|...|-.+|++.+|++-++...+. +|| +..|..++.+..-..+|.+
T Consensus 436 g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999864 224678899999999999999999999999875 555 3466666666544444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-12 Score=105.46 Aligned_cols=220 Identities=12% Similarity=0.044 Sum_probs=162.7
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
..+++++|...+++..+..|. +..++..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|+
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHN--NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 557789999999999998775 77889899999999999999999999998875 335678888999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCH
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 171 (256)
..++++.+.. |+ +...+..++..+...|++++|...+++......+-+...+..+..++...|+.
T Consensus 393 ~~~~~Al~l~--P~-------------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 393 QTINECLKLD--PT-------------RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHHHHhcC--CC-------------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 9999998852 22 22223334445667899999999999987664332455577778888899999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
++|...++++.... +.+....+.+...+...| ++|...++.+.+.. -.+.. ...+...|.-.|+.+.+..+ ++
T Consensus 458 ~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~ 531 (553)
T PRK12370 458 ELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NK 531 (553)
T ss_pred HHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HH
Confidence 99999999987652 223444555666677777 47888787776531 11211 22244556667777777766 87
Q ss_pred HHhcC
Q 047518 251 MESMG 255 (256)
Q Consensus 251 m~~~g 255 (256)
+.+.|
T Consensus 532 ~~~~~ 536 (553)
T PRK12370 532 FKNED 536 (553)
T ss_pred hhccc
Confidence 77654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-11 Score=88.51 Aligned_cols=223 Identities=11% Similarity=0.069 Sum_probs=162.9
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
.-.|+|..|++...+-.+.+.. ....|..-+.+.-+.|+.+.+-.++.+.-+..-.++...+-.........|+++.|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 4578999999998887776665 44566677778888899999999998887764455666777777778888888888
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP----------------- 153 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 153 (256)
..-+.++.+.+ +.++........+|.+.|++.+...++..+.+.|.--
T Consensus 173 ~~~v~~ll~~~---------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 173 RENVDQLLEMT---------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHHHHHHHHhC---------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 88888877742 3445556666777777777777777777766655421
Q ss_pred ------------------------chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC----------------------
Q 047518 154 ------------------------NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ---------------------- 187 (256)
Q Consensus 154 ------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---------------------- 187 (256)
++..-..++.-+...|+.++|.++.++..+.+..
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHH
Confidence 1222233344455666677777766665544322
Q ss_pred --------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 188 --------PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 188 --------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
-+.-.+.++...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+..+|.++.++-.
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 23466788899999999999999999988775 7899999999999999999999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-11 Score=104.51 Aligned_cols=219 Identities=9% Similarity=0.050 Sum_probs=167.3
Q ss_pred cCChhhHHHHHHHHHHhCCC-CC--CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 13 TITPNEALCIFDYMLRMHPS-PP--PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
.|+..++....+...+.-+. |+ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHH
Confidence 45555555555555554433 34 56678888888776 8899999988887765 3665444445555678999999
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 169 (256)
|...++++... +|+...+..+..++.+.|++++|...++...+.... +...+..+.......|
T Consensus 528 Ai~~~rka~~~----------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~G 590 (987)
T PRK09782 528 ALAAWQKISLH----------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHhcc----------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCC
Confidence 99999987653 233344566778889999999999999999887532 3334444444555669
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (256)
++++|...+++..+. .|+...+..+..++.+.|++++|...+++..... +.+...+..+..++...|+.++|++.++
T Consensus 591 r~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 591 QPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999986 4678889999999999999999999999999873 4567788888889999999999999999
Q ss_pred HHHhc
Q 047518 250 SMESM 254 (256)
Q Consensus 250 ~m~~~ 254 (256)
+..+.
T Consensus 668 ~AL~l 672 (987)
T PRK09782 668 RAHKG 672 (987)
T ss_pred HHHHh
Confidence 87653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-14 Score=76.78 Aligned_cols=50 Identities=46% Similarity=0.917 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (256)
||..+||.++.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666777777777777777777777777777777777777777776653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-13 Score=97.50 Aligned_cols=227 Identities=13% Similarity=0.086 Sum_probs=187.7
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhh-HHHHHHHHHhc
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-HSILINCFCKM 84 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 84 (256)
.|..|.+.|.+.+|.+-|+..++..+ -+.+|..|-..|.+.+++..|+.+|.+-.+. .|-..| ..-+.+.+-..
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~---~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFP---HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCC---chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 35667889999999999999887554 4567999999999999999999999988765 454444 44566777888
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (256)
++.++|.++|+...+. .+.++.....+...|.-.++++-|++.|+++.+.|+. +...|+.+--+
T Consensus 304 ~~~~~a~~lYk~vlk~---------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLC 367 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL---------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLC 367 (478)
T ss_pred HhHHHHHHHHHHHHhc---------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHH
Confidence 9999999999998885 1334555666677888999999999999999999987 88899999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 047518 165 FCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 242 (256)
|...++++-++..|++....--.|+ ...|..+.......|++..|.+.|+-....+ .-+...++.|.-.-.+.|+++
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchH
Confidence 9999999999999999886543344 4578888888899999999999999988764 446678888888888999999
Q ss_pred HHHHHHHHHHhc
Q 047518 243 HAKELFVSMESM 254 (256)
Q Consensus 243 ~a~~~~~~m~~~ 254 (256)
+|..+++...+.
T Consensus 447 ~Arsll~~A~s~ 458 (478)
T KOG1129|consen 447 GARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHhhhh
Confidence 999999877653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-11 Score=93.78 Aligned_cols=220 Identities=9% Similarity=0.049 Sum_probs=162.1
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHH--HHHHHHHhcCCcc
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS--ILINCFCKMGRVS 88 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 88 (256)
.-.|+++.|++.+....+.... ....|........+.|+++.|...++++.+. .|+..... .....+...|+++
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~--p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQ--PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 4479999999888876553222 2223444455558999999999999999875 45554333 3366888999999
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP--------------- 153 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------- 153 (256)
.|...++++.+.. +.++.....+...|.+.|+|++|..++..+.+.+..+
T Consensus 171 ~Al~~l~~~~~~~---------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 171 AARHGVDKLLEVA---------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999998852 3456677888999999999999999988887654432
Q ss_pred --------------------------chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 154 --------------------------NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 154 --------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
+......+...+...|+.++|...+++..+. .|+.... ++.+....++.+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~ 311 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPE 311 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChH
Confidence 2223334456677888889999988888874 4454322 233334568888
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
++.+..+...+.. +-|+..+..+...|.+.|+|++|.+.|+...+.
T Consensus 312 ~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 312 QLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999998888763 556777889999999999999999999988764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-12 Score=91.96 Aligned_cols=242 Identities=13% Similarity=0.075 Sum_probs=142.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPV--SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
|+.|.+.|.+|+|+++.+.+......+-+. ...-.|..-|...|-+++|+.+|..+.+.| .--......|+..|-..
T Consensus 76 GnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~t 154 (389)
T COG2956 76 GNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQAT 154 (389)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHh
Confidence 444555566666666665555433221111 123345555555566666666665555543 12334455555555555
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhh------------------------hhhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSL------------------------IKVCKPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
.+|++|+.+-+++.+.+-.+...-...+ +...+.++.+--.+.+.+...|+++.|.
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV 234 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAV 234 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHH
Confidence 5566655555555554322211100000 0011223334445667788888888888
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
+.++.+.+.++..-..+...|..+|.+.|+.++...++..+.+... ....-..+...-....-.+.|...+.+-...
T Consensus 235 ~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r- 311 (389)
T COG2956 235 EALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR- 311 (389)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh-
Confidence 8888888887666667778888888888888888888888887633 3334444444444555566666666555554
Q ss_pred CCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHh
Q 047518 221 VRPDAFTYNTLLDGFCL---TGRVNHAKELFVSMES 253 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 253 (256)
+|+...+..++..-.. .|.+.+.+.+++.|..
T Consensus 312 -~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 312 -KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred -CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 6899999999886543 3556777777777764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-12 Score=94.95 Aligned_cols=205 Identities=14% Similarity=0.233 Sum_probs=118.1
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch-
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH- 89 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 89 (256)
++--..++|..++++....... .+..+||.+|.+-.-.. -.++..+|....+.||..|+|.++++..+.|+++.
T Consensus 218 ~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~a 292 (625)
T KOG4422|consen 218 CKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDA 292 (625)
T ss_pred HHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHH
Confidence 3334455555555554443333 34455555554332221 14555666666677777777777777777776654
Q ss_pred ---HHHHHHHHHhcCCCCchhhHHhhhh------------------------------hcCCCHHHHHHHHHHHHhcCCH
Q 047518 90 ---GFVVLGRILRSCFTPDVVTFTSLIK------------------------------VCKPDAITYNTIIDGLCKQGFV 136 (256)
Q Consensus 90 ---a~~~~~~~~~~~~~~~~~~~~~ll~------------------------------~~~~~~~~~~~l~~~~~~~~~~ 136 (256)
|.+++.+|.+.|+.|...+|.-+|. ..+.|...|...+..|.+..+.
T Consensus 293 r~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~ 372 (625)
T KOG4422|consen 293 RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDL 372 (625)
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhH
Confidence 3455666777777777777766664 1123445566667777777777
Q ss_pred HHHHHHHHHHHhCC----CCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHH
Q 047518 137 DKAKELFLKMKDKN----VKPN---VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 137 ~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 209 (256)
+.|.++-..+.... +.|+ ..-|..+....++....+.....|+.|+-.-.-|+..+...++++..-.|.++-.
T Consensus 373 ~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~i 452 (625)
T KOG4422|consen 373 ELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVI 452 (625)
T ss_pred HHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhH
Confidence 77777665554321 1222 1234455555566666666666666666555556666666666666666666666
Q ss_pred HHHHHHHHHCC
Q 047518 210 SSLLDLMIQHG 220 (256)
Q Consensus 210 ~~~~~~~~~~~ 220 (256)
-++|.++...|
T Consensus 453 pRiw~D~~~~g 463 (625)
T KOG4422|consen 453 PRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHhh
Confidence 66665555433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-14 Score=75.99 Aligned_cols=49 Identities=45% Similarity=0.999 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666666554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=101.87 Aligned_cols=220 Identities=15% Similarity=0.076 Sum_probs=167.3
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC---------------------------
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--------------------------- 66 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------- 66 (256)
=+..+|+..|.++..+... +......+..+|...+++++|.++|+.+++..
T Consensus 333 y~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYN--TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 3567899999996554443 44566788999999999999999999887652
Q ss_pred ------CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 67 ------LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 67 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
-+..+.+|..+..+|.-+++.+.|++.|++..+.. +....+|+.+..-+.....+|.|.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---------------p~faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---------------PRFAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---------------CccchhhhhcCChhhhhHHHHhHH
Confidence 01245678888888888888888888888887741 224567777777778888888888
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
..|+........ +-.+|-.+...|.++++++.|+-.|+...+-+ +-+.+....+...+-+.|+.++|+++++++...+
T Consensus 476 ~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 476 KSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 888877765332 34455556677889999999999999998875 3367777888888899999999999999988764
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+-|+..-..-+..+...++.++|+..++++++
T Consensus 554 -~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 554 -PKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred -CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 33555555566777888999999999998875
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-11 Score=100.79 Aligned_cols=224 Identities=14% Similarity=0.087 Sum_probs=168.0
Q ss_pred hhHHHHHHHHHHhCCCCCCccc-HH----HHHHHHHccCChHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCcchH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSS-FN----IMLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~-~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 90 (256)
++|+..++.+.+..+..|+... +. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 7789999998865333233321 11 1134456779999999999999887632 332 223357789999999999
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCc---hH
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-----------KPN---VV 156 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~ 156 (256)
+.+|+++.+.. |.. ..........+..++...|++++|..+++.+..... .|+ ..
T Consensus 292 ~~~l~~~l~~~--p~~---------~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 292 QSILTELFYHP--ETI---------ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHHHHHhhcC--CCC---------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 99999988642 211 001123455667788999999999999999987532 123 23
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
.+..+...+...|+.++|+..++++.... +.+...+..+...+...|++++|++.+++..... +.+...+...+..+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHH
Confidence 45667778889999999999999998874 4567889999999999999999999999999863 345677778888899
Q ss_pred hcCChhHHHHHHHHHHhc
Q 047518 237 LTGRVNHAKELFVSMESM 254 (256)
Q Consensus 237 ~~g~~~~a~~~~~~m~~~ 254 (256)
+.|++++|.++++++++.
T Consensus 439 ~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhCCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-11 Score=92.56 Aligned_cols=212 Identities=20% Similarity=0.292 Sum_probs=160.3
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHH--HHhcCCcchH-HHHHHHHHhcCCCCc-----hh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC--FCKMGRVSHG-FVVLGRILRSCFTPD-----VV 107 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a-~~~~~~~~~~~~~~~-----~~ 107 (256)
+.+=|.|+.. ...|...++.-+|+.|.+.|++.+...-..|+.. |....+..-+ .+.|-.|.+.|-... -.
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455666654 5678899999999999999988777665555543 3333333322 334445555443221 11
Q ss_pred hHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 108 ~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.-..+....+.+..++.+||.+.++-...+.|..+|++......+.+..+||.+|.+-+... ..+++.+|....++
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 12223345577889999999999999999999999999998888889999999998754433 37889999999999
Q ss_pred CcHHHHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH-HHHHHHHHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDE----ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH-AKELFVSME 252 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~ 252 (256)
||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|.-+.+.++..+ |..++.++.
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 999999999999999998765 56778889999999999999999999999888755 444555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-11 Score=91.35 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=138.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
.|..++.+-|+-.++.++|..+|++.++.+ +....+|+.+..-|....+...|...|+...+..+
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---------------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN---------------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC---------------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 344455556666778889999999988852 34566888899999999999999999999998865
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 152 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
. |-..|-.+-++|.-.+...-|+-.|++..... +-|.+.|.+|..+|.+.++.++|++.|......| ..+...+..+
T Consensus 396 ~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~L 472 (559)
T KOG1155|consen 396 R-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRL 472 (559)
T ss_pred h-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHH
Confidence 4 88899999999999999999999999999874 4578999999999999999999999999998876 3366789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 047518 232 LDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 232 ~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
...|.+.++.++|...+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999998877554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-10 Score=98.13 Aligned_cols=241 Identities=12% Similarity=0.076 Sum_probs=165.2
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
..+...|++++|+++|+++.+..|. +...+..++..+.+.++.++|++.++++... .|+...+..++..+...++.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 3556779999999999999988776 5566777788888999999999999998776 45555554444444445566
Q ss_pred chHHHHHHHHHhcCCCCc-hhhHHhhhh----------------------------------------------------
Q 047518 88 SHGFVVLGRILRSCFTPD-VVTFTSLIK---------------------------------------------------- 114 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~-~~~~~~ll~---------------------------------------------------- 114 (256)
.+|++.++++.+.. |+ ...+..+..
T Consensus 186 ~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 56888888888752 32 111111111
Q ss_pred ------------------hcCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCH
Q 047518 115 ------------------VCKPDA-ITY----NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171 (256)
Q Consensus 115 ------------------~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 171 (256)
...|.. ..| -=.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 011211 111 123456777888888888888888887665666778888888888888
Q ss_pred HHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCCH---HhHHHHH
Q 047518 172 NEAKRLFIEMMDQG-----VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-----------RPDA---FTYNTLL 232 (256)
Q Consensus 172 ~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~ 232 (256)
++|+.+++.+.... ..++......|..++...+++++|..+++.+.+... .|+. ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 88888888886542 122344456788888888888888888888876311 1222 2345566
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 047518 233 DGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+...|+..+|.+.++++...
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6778888888888888887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-10 Score=90.45 Aligned_cols=219 Identities=7% Similarity=0.017 Sum_probs=153.4
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHhcCCc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL--YTHSILINCFCKMGRV 87 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 87 (256)
....|+++.|.+.+.+..+..+. +...+-.....+.+.|+++.|.+.+++..+.. |+. .........+...|++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 45689999999999988775443 33344556678888999999999999987653 443 3444457788899999
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------------
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-------------- 153 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------- 153 (256)
+.|...++.+.+.. +.++.++..+...+...|++++|...+..+.+.++.+
T Consensus 170 ~~Al~~l~~l~~~~---------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 170 HAARHGVDKLLEMA---------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999863 3355667777888888888888888888777654321
Q ss_pred ---------------------------chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHH---HHHHHHHHHhc
Q 047518 154 ---------------------------NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT---FNVIMDELCKN 203 (256)
Q Consensus 154 ---------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~ 203 (256)
+...+..+...+...|+.++|.+.+++..+.. ||... ...........
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCC
Confidence 23334444455667778888888888877753 33321 11111222334
Q ss_pred CChhHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 204 GKMDEASSLLDLMIQHGVRPDA--FTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
++.+.+.+.++...+. .+-++ ....++...+.+.|++++|.+.|+.
T Consensus 313 ~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred CChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6677777777777664 23344 5667888889999999999999983
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-10 Score=97.07 Aligned_cols=235 Identities=11% Similarity=0.110 Sum_probs=115.2
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.|+.++|++++.+.....+ .+...+..+...+...|++++|..+|++..+.. +.+...+..+..++...|++++|..
T Consensus 28 ~g~~~~A~~~~~~~~~~~~--~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQ--LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555566655555544222 233445555555666666666666666555442 2233444455555555666666666
Q ss_pred HHHHHHhcCCCCchhhHHhhh--------------------hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 047518 93 VLGRILRSCFTPDVVTFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD---- 148 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 148 (256)
.++++.+. .|+...+..+- ...+.+...+..+..++...+..++|+..++....
T Consensus 105 ~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 105 KAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 66555543 11111010000 01233455555666666666766655544442211
Q ss_pred ------------------------------------------C-CCCCchH-HHH----HHHHHHhccCCHHHHHHHHHH
Q 047518 149 ------------------------------------------K-NVKPNVV-TYT----SVIRGFCYANDWNEAKRLFIE 180 (256)
Q Consensus 149 ------------------------------------------~-~~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~ 180 (256)
. ...|+.. .+. ..+..+...|++++|...|+.
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 0 0001110 010 002233455666677777776
Q ss_pred HHHcCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 181 MMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP---DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 181 ~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++|.++++++.+
T Consensus 263 ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 263 LKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred hhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 6655421 221 11223556666777777777777665432110 123445555566677777777777766654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-10 Score=85.90 Aligned_cols=224 Identities=12% Similarity=-0.023 Sum_probs=160.3
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPP--VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
.....+..+.++..+.+++...+..|+ ...|..+...+...|+++.|...|++..+.. +.+...|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 334456778888888888865443222 3568888889999999999999999998874 3467899999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|...|++..+. . +.+..+|..+..++...|++++|...|+...+..+ +..........+.
T Consensus 114 ~~~A~~~~~~Al~l--~-------------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~ 176 (296)
T PRK11189 114 FDAAYEAFDSVLEL--D-------------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAE 176 (296)
T ss_pred HHHHHHHHHHHHHh--C-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 99999999999874 2 23456788888999999999999999999988643 3221222222345
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CC---CCCHHhHHHHHHHHHhcCC
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH---GV---RPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~ 240 (256)
..++.++|...+.+..... .|+...+ .......|+...+ ..+..+.+. .. +.....|..+...+.+.|+
T Consensus 177 ~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~ 251 (296)
T PRK11189 177 SKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD 251 (296)
T ss_pred ccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 6688999999997765432 3332222 2233345666554 355555431 11 1133578899999999999
Q ss_pred hhHHHHHHHHHHhcC
Q 047518 241 VNHAKELFVSMESMG 255 (256)
Q Consensus 241 ~~~a~~~~~~m~~~g 255 (256)
+++|...|++..+.+
T Consensus 252 ~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 252 LDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-11 Score=94.87 Aligned_cols=239 Identities=18% Similarity=0.153 Sum_probs=175.6
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHh-----CCCCCCccc-HHHHHHHHHccCChHHHHHHHHHHhhC-----CC--CCCHh
Q 047518 6 SGEGDITTITPNEALCIFDYMLRM-----HPSPPPVSS-FNIMLGCLAKNKHYDTVLSLFKRLNST-----GL--FPDLY 72 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~ 72 (256)
.+..|...|+++.|+..+++..+. |...|.+.+ .+.+...|...+++.+|..+|+++... |- +.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 456788899999999999998775 211134333 345778899999999999999998542 21 11235
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA-ITYNTIIDGLCKQGFVDKAKELFLKMKDK-- 149 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 149 (256)
+++.|..+|.+.|++++|..+++.+.+.- ........+.+ ..++.+...+...+++++|..+++...+.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~--------~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIY--------EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHH--------HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 78888889999999999999998887631 11111112222 34567788899999999999999876432
Q ss_pred -CCCC----chHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 150 -NVKP----NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----G--VQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 150 -~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
-+.+ -..+++.+...|...|++++|.+++++++.. | ..-....++.+...|.+.+++++|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1122 2467899999999999999999999998743 1 11224567888899999999999999998754
Q ss_pred H----CC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 218 Q----HG--VRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 218 ~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
. .| .+-...+|..|...|.+.|++++|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 22 22234689999999999999999999987765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.4e-11 Score=89.54 Aligned_cols=229 Identities=14% Similarity=0.106 Sum_probs=179.4
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|.-.|.-++-.|++-.|.+-|+..+...+. +...|--+...|.+..+.++.+..|+...+.+ +-++.+|..-.+.+.
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRF 405 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHH
Confidence 334456677789999999999999998776 33348888899999999999999999998875 346778888888888
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
-.+++++|..-|++.+.. . +.+...|-.+.-+..+.+.++++...|++.+.+ ++-.+..|+...
T Consensus 406 lL~q~e~A~aDF~Kai~L--~-------------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fA 469 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISL--D-------------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFA 469 (606)
T ss_pred HHHHHHHHHHHHHHHhhc--C-------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHH
Confidence 889999999999998874 2 235556777778888899999999999999887 445778999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCC-----CcHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQ-----PNVVTF-NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
..+...+++++|.+.|+..++.... .+...+ +..+-.+.-.+++..|..++++..+.+ +.....|..|.+.-.
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFEL 548 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHH
Confidence 9999999999999999998875221 111111 111112223489999999999998763 334567899999999
Q ss_pred hcCChhHHHHHHHHH
Q 047518 237 LTGRVNHAKELFVSM 251 (256)
Q Consensus 237 ~~g~~~~a~~~~~~m 251 (256)
+.|+.++|+++|++-
T Consensus 549 Q~~~i~eAielFEks 563 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKS 563 (606)
T ss_pred HHhhHHHHHHHHHHH
Confidence 999999999999864
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-10 Score=86.73 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=106.5
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
-|.-.++-+.|...|++.++.+|. ....|+.+..-|...++...|.+.++...+.. +.|-..|..+.++|.-.+...
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~--~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPK--YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcc--hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchH
Confidence 344455556666666666665553 45556666666666666666666666666553 335556666666666666666
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
-|+-+|++..+. -+-|...|.+|..+|.+.++.++|++.|......|-. +...+..+.+.|.+.
T Consensus 416 YaLyYfqkA~~~---------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l 479 (559)
T KOG1155|consen 416 YALYYFQKALEL---------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHHHHHHhc---------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHH
Confidence 666666666552 1235556666666666666666666666666555432 445566666666666
Q ss_pred CCHHHHHHHHHHHHHc----C-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 169 NDWNEAKRLFIEMMDQ----G-VQP-NVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~----~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
++..+|.+.++..++. | ..| .......|...+.+.+++++|.......
T Consensus 480 ~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 6666666666555432 1 111 1122222444445555555555444333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-10 Score=77.08 Aligned_cols=190 Identities=13% Similarity=0.033 Sum_probs=91.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCC
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 119 (256)
..+.-.|.+.|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+-|++.++. .+.+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---------------~p~~ 102 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL---------------APNN 102 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---------------CCCc
Confidence 334445555555555555555555442 223345555555555555555555555555542 1223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
..+.|.....+|..|.+++|...|++....- ..-...+|..+.-+..+.|+.+.|...+++..+.. +-...+...+..
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~ 181 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELAR 181 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHH
Confidence 3444555555555555555555555544331 11122344444444455555555555555555442 112334444445
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
...+.|++-.|...++.....+. ++.......|+.-...|+.+.+-++
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 55555555555555555544432 4555444445554555555544443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-10 Score=84.57 Aligned_cols=202 Identities=15% Similarity=0.089 Sum_probs=142.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+.+.|++++|...|++..+..|. +...|+.+...+...|+++.|...|+...+.. +-+..+|..+..++...|+
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 44566789999999999999997765 77889999999999999999999999998764 2246788889999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|.+.+++..+. .|+ +. ........+...+++++|...|.+..... .|+...+ .+.. .
T Consensus 148 ~~eA~~~~~~al~~--~P~-------------~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~ 207 (296)
T PRK11189 148 YELAQDDLLAFYQD--DPN-------------DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--F 207 (296)
T ss_pred HHHHHHHHHHHHHh--CCC-------------CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--H
Confidence 99999999999885 222 11 11112223456788999999997765432 2232222 2222 3
Q ss_pred ccCCHHHHHHHHHHHHHc---CC--C-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH-HHHHH
Q 047518 167 YANDWNEAKRLFIEMMDQ---GV--Q-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY-NTLLD 233 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 233 (256)
..|+...+ ..++.+.+. .. . .....|..+...+...|++++|...|+...+.+ +|+..-+ ..++.
T Consensus 208 ~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~~e 279 (296)
T PRK11189 208 YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYALLE 279 (296)
T ss_pred HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHHHH
Confidence 35665544 344444422 11 1 124578899999999999999999999999875 3344433 33443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=83.80 Aligned_cols=244 Identities=14% Similarity=0.133 Sum_probs=172.1
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH-hhHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINCF 81 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 81 (256)
|+..|+.+.++|++++|++.|.+.+...|. .+.-|.....+|...|+|+.+.+.-....+. .|+- ..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 456789999999999999999999987654 2667899999999999999999988877765 4442 2444444445
Q ss_pred HhcCCcchHHH----------------------HHHHH--------Hh---cCCCCchhhHHhhhh--------------
Q 047518 82 CKMGRVSHGFV----------------------VLGRI--------LR---SCFTPDVVTFTSLIK-------------- 114 (256)
Q Consensus 82 ~~~~~~~~a~~----------------------~~~~~--------~~---~~~~~~~~~~~~ll~-------------- 114 (256)
-..|++++|+. ++... .+ ....|+.....+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 45555444422 11111 11 112344333333332
Q ss_pred --------------------------------------------------------------------------------
Q 047518 115 -------------------------------------------------------------------------------- 114 (256)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (256)
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence
Q ss_pred -hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 115 -VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 115 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
..+.+...|-.+..+|....+.++....|+...+.+.. +..+|..-.+.+.-.+++++|..=|++.+... +-+...|
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 11222333666666777777777777777777776554 66677777777777788888888888887763 2345666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+..+.-+.++++++...|++..+. .+..+.+|+.....+...+++++|.+.|+..++
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 66767777889999999999999876 677788999999999999999999999987764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-09 Score=88.00 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=172.1
Q ss_pred hhHHHHHHHHHHhCCCCCCc-ccH----HHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 17 NEALCIFDYMLRMHPSPPPV-SSF----NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
+.|+.-++.+...-+..|.. ..| .-.+-++...++..++++.|+.+...|.+....+-..+.++|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 44555566655532221322 222 2455677888999999999999999987766678889999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CC--ch-HH
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-----------KP--NV-VT 157 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~--~~-~~ 157 (256)
.+|+++....-.+. ...++......|.-+|...+++++|..+++.+.+..+ .| |- ..
T Consensus 348 ~l~~~~~~~~~~~~---------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 348 PILSSLYYSDGKTF---------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred HHHHHHhhcccccc---------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 99999977521110 1123444457788899999999999999999987321 12 22 23
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 158 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|+..++..... -+-+..+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHh
Confidence 4556777889999999999999998874 568899999999999999999999999887765 24456778888889999
Q ss_pred cCChhHHHHHHHHHHh
Q 047518 238 TGRVNHAKELFVSMES 253 (256)
Q Consensus 238 ~g~~~~a~~~~~~m~~ 253 (256)
.|++++|.++.+.+.+
T Consensus 497 l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 497 LQEWHQMELLTDDVIS 512 (822)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 9999999998877654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-09 Score=72.43 Aligned_cols=202 Identities=14% Similarity=0.073 Sum_probs=170.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|-+|+..|++..|..-+++.+++.|. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|.....++..|+
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 45788999999999999999998876 77889999999999999999999999998874 3356788999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|...|++.... |. ...-..+|..+.-+..+.|+.+.|...|.+..+.... ...+.-.+.+...
T Consensus 119 ~~eA~q~F~~Al~~---P~----------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~ 184 (250)
T COG3063 119 PEEAMQQFERALAD---PA----------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHY 184 (250)
T ss_pred hHHHHHHHHHHHhC---CC----------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHH
Confidence 99999999999885 21 2345678999999999999999999999999887544 4456677888888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
..|++..|...++.....+. ++....-..|..-.+.|+-+.+.+.=..+.+. -|...-|
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred hcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 99999999999999988764 88888888899999999999888877777654 3444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-09 Score=83.50 Aligned_cols=213 Identities=13% Similarity=0.063 Sum_probs=168.5
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|+-...+|+++.|...|++.+..... -+...-.+.-.+-..|+.++|++.|-++..- +..+..+...+...|-...
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndas--c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDAS--CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLE 572 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchH--HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhh
Confidence 455567789999999999999774332 2223333444667889999999999887543 2346677778888898889
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
+...|++++-+.... ++.|+.+.+.|...|-+.|+-..|.+.+-.--.- ++-+..+...|..-|
T Consensus 573 d~aqaie~~~q~~sl---------------ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayy 636 (840)
T KOG2003|consen 573 DPAQAIELLMQANSL---------------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYY 636 (840)
T ss_pred CHHHHHHHHHHhccc---------------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHH
Confidence 999999998777653 4567888999999999999999999887654433 455778888888888
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL-CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
....-+++++..|++..- +.|+..-|..++..| .+.|++++|.+++++.... ++.+..+...|++.+...|-
T Consensus 637 idtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 888899999999998765 489999998887665 5789999999999998765 67789999999998877764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-09 Score=89.38 Aligned_cols=241 Identities=14% Similarity=0.131 Sum_probs=148.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
++-....|++++|.+++.++.+..|. +...|..|...|-+.|+.+++...+-..-... +-|...|..+.....+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 34445569999999999999998875 77889999999999999988887765543332 3355677777766667777
Q ss_pred cchHHHHHHHHHhcCCCCc-------------------hhhHHhhhh---------------------------------
Q 047518 87 VSHGFVVLGRILRSCFTPD-------------------VVTFTSLIK--------------------------------- 114 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~-------------------~~~~~~ll~--------------------------------- 114 (256)
+..|.-.|.++++..-..- ..++..++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777766666665421110 001111111
Q ss_pred --------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------------------------
Q 047518 115 --------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD-------------------------------------- 148 (256)
Q Consensus 115 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------------------------- 148 (256)
.-..+...+++++..|.+...++.|......+..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 1112334455666666666666666666555543
Q ss_pred -----------------------CC--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 149 -----------------------KN--VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 149 -----------------------~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
.. +.-+...|.-+..++...|.+.+|+.++..+......-+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 11 11123344555566667777777777777776654444556677777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
|..++|.+.|+..+... +-+...-..|...+.+.|+.++|.+.+..|
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 77777777777766542 223444555666666777777777766654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-09 Score=83.08 Aligned_cols=237 Identities=16% Similarity=0.104 Sum_probs=137.7
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHH-HHHHHHHhc----
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS-ILINCFCKM---- 84 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~---- 84 (256)
+...|++++|++.++.-...-. ............+.+.|+.++|..+|..+++.+ |+...|. .+..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 3567999999999987655332 234556778889999999999999999999885 5555444 444444222
Q ss_pred -CCcchHHHHHHHHHhc----------------------------------CCCCchhhHHhhhh---------------
Q 047518 85 -GRVSHGFVVLGRILRS----------------------------------CFTPDVVTFTSLIK--------------- 114 (256)
Q Consensus 85 -~~~~~a~~~~~~~~~~----------------------------------~~~~~~~~~~~ll~--------------- 114 (256)
...+....+|+++... |+++--.....+..
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 2344455666665442 22111111111100
Q ss_pred -----------------hcCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHH
Q 047518 115 -----------------VCKPDAITY--NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175 (256)
Q Consensus 115 -----------------~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 175 (256)
.-+|+...| .-+...|...|++++|+.+++...+..+. .+..|..-.+.+-+.|++.+|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 001233223 33455666677777777777766665322 3556666666666777777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------hH--HHHHHHHHhcCChhHHHHH
Q 047518 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF------TY--NTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~a~~~ 247 (256)
..++...... .-|...-+..+..+.++|++++|.+++..+-+.+..|... .| .....+|.+.|++..|++-
T Consensus 249 ~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 249 EAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777766654 2355555556666667777777777776665544332221 11 3344566677777777666
Q ss_pred HHHHH
Q 047518 248 FVSME 252 (256)
Q Consensus 248 ~~~m~ 252 (256)
|..+.
T Consensus 328 ~~~v~ 332 (517)
T PF12569_consen 328 FHAVL 332 (517)
T ss_pred HHHHH
Confidence 55543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-10 Score=83.36 Aligned_cols=194 Identities=17% Similarity=0.119 Sum_probs=162.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCC
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 119 (256)
+.+..+|.+.|-+.+|.+.++.-.+. .|-+.||-.|-+.|.+..++..|+.++.+-++. .+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---------------fP~~ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---------------FPFD 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---------------CCch
Confidence 57889999999999999999998876 678889999999999999999999999888874 2344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
+....-+...+...++.++|.++|+...+... .++.....+...|...++++-|+.+++++...|+. +...|+.+.-+
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLC 367 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLC 367 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHH
Confidence 55556677888999999999999999988743 37777777888888999999999999999999965 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
|.-.++++-++.-|.+....--.|+ ..+|..+.......||+..|.+.|+-..
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 9999999999999998886533344 3467777777778888888888776544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-09 Score=83.06 Aligned_cols=242 Identities=9% Similarity=0.030 Sum_probs=155.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
+..+.++|+++.|+++++-+.+......+...-|..+--|.+ .+++..|.++-+...... .-+......-.......|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 345788999999999998887655442333333322222222 234555555555443321 112222222222223345
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhh-------------------hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll-------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
++++|...|.+.+...-......|+.-+ .....+..+...+.+.|....++..|+.++.+.
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 6666666666655432111111111111 122345666677778888888888888888776
Q ss_pred HhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
... ++.|+...+.|...|-+.|+-.+|.+.+-+--+. ++-+..+...|...|....-+++++..|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 654 4557778888888999999999998887665554 456788888888889999999999999988754 589999
Q ss_pred hHHHHHHHH-HhcCChhHHHHHHHHHHh
Q 047518 227 TYNTLLDGF-CLTGRVNHAKELFVSMES 253 (256)
Q Consensus 227 ~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 253 (256)
-|..++..| .+.|++.+|.++++..-.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999888755 678999999999987643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-08 Score=74.47 Aligned_cols=203 Identities=11% Similarity=0.124 Sum_probs=153.3
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
+.|+.+.+=..+.+..+..+. ++....-.........|+++.|..-..++.+.+ +-++.......++|.+.|++....
T Consensus 130 qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALL 207 (400)
T ss_pred hcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHH
Confidence 467777777777777664333 455556667777777888888888888877765 335667777888888888888888
Q ss_pred HHHHHHHhcCCCCchh-------hHHhhhh--------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 92 VVLGRILRSCFTPDVV-------TFTSLIK--------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~-------~~~~ll~--------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
.+...+.+.|...+.. ++..++. ..+.++..-..++.-+.++|+.++|.++..
T Consensus 208 ~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 208 AILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 8888887776655432 2333332 334566777778888899999999999888
Q ss_pred HHHhCCC------------------------------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 145 KMKDKNV------------------------------KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 145 ~~~~~~~------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+..+.+. +.++..+..+-..|.+.+.|.+|...++...+. .|+..+|+
T Consensus 288 ~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~ 365 (400)
T COG3071 288 DALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYA 365 (400)
T ss_pred HHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHH
Confidence 7665433 224456777888899999999999999988776 78999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+..++.+.|+..+|.++.++...
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999988764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-09 Score=87.36 Aligned_cols=214 Identities=16% Similarity=0.130 Sum_probs=134.5
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC------------------------CCCCHhhHHH
Q 047518 21 CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG------------------------LFPDLYTHSI 76 (256)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~~~ 76 (256)
.++..+...|.. |+.++|..+|..|+..|+.+.|- +|.-|.-.. -.|...||..
T Consensus 11 nfla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~ 88 (1088)
T KOG4318|consen 11 NFLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTN 88 (1088)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHH
Confidence 345566667777 88899999999999999998887 766664321 1356789999
Q ss_pred HHHHHHhcCCcchHHHHHHH-HH-------hcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHH--------
Q 047518 77 LINCFCKMGRVSHGFVVLGR-IL-------RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK-------- 140 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~-~~-------~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~-------- 140 (256)
|..+|...|++.. ++..++ +. ..|+.....-+...+..++.....-...+......|.|+.++
T Consensus 89 Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999999765 222222 22 123222111111111111110000011111111122222222
Q ss_pred ----------------------HHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 141 ----------------------ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 141 ----------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
++........-.|+..+|..++.+-...|+.+.|..++.+|.+.|++.+.+-|-.++-
T Consensus 168 sa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 168 SAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred ccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 2222221111147888888888888888999999999999999988888877777765
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
+ .++..-++.+++.|...|+.|+..|+.-.+..+..+|.
T Consensus 248 g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 248 G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 5 78888888888888888999998888877776666443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-08 Score=80.08 Aligned_cols=234 Identities=15% Similarity=0.100 Sum_probs=181.1
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+++.|++.+|.-.|+......|. ++..|-.|.......++-..|+..+++..+.. +-+....-.|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 45568899999999999999998876 88999999999999999999999999998874 3356788888889999999
Q ss_pred cchHHHHHHHHHhcCC-------------------CCchhhHHhhhh---------hcCCCHHHHHHHHHHHHhcCCHHH
Q 047518 87 VSHGFVVLGRILRSCF-------------------TPDVVTFTSLIK---------VCKPDAITYNTIIDGLCKQGFVDK 138 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~-------------------~~~~~~~~~ll~---------~~~~~~~~~~~l~~~~~~~~~~~~ 138 (256)
-..|.+.++..+.... .++...+..+.. ....|+.+...|...|.-.|++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999999888754310 011111111111 224788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
|.+.|+......+. |...||.|-..++...+..+|+..|++.++. .|+ ++....|.-+|...|.+++|.+.|-..+
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999887543 7789999999999999999999999999986 454 4566677788999999999999987665
Q ss_pred H---C------CCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 218 Q---H------GVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 218 ~---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
. . +..++...|..|=.++.-.++.|.+.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 3 1 112234567666666666777664443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-07 Score=74.03 Aligned_cols=226 Identities=14% Similarity=0.111 Sum_probs=132.8
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHH---HHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNI---MLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKM 84 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 84 (256)
.+...|++++|...+++..+..|. +...+.. ........+....+.+.++.. .+..|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPR--DLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 345678888888888888776654 4444442 111122234445555555441 111233 33444566677888
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cch--HHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-PNV--VTYTSV 161 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l 161 (256)
|++++|...+++..+.. +.+...+..+..++...|++++|...++........ |+. ..|..+
T Consensus 128 G~~~~A~~~~~~al~~~---------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 128 GQYDRAEEAARRALELN---------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred CCHHHHHHHHHHHHhhC---------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 88888888888888752 234556777888888999999999999887765321 222 345567
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCC-CCcHHHH-H--HHHHHHHhcCChhHHHHH--HHHH-HHC-CCCCCHHhHHHHHH
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTF-N--VIMDELCKNGKMDEASSL--LDLM-IQH-GVRPDAFTYNTLLD 233 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~ll~~~~~~g~~~~a~~~--~~~~-~~~-~~~~~~~~~~~l~~ 233 (256)
...+...|++++|..++++...... .+..... + .++.-+...|....+.+. +... ... ..............
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 7788888999999999988864322 1112111 1 233334444543333333 2111 111 00111122234566
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047518 234 GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~ 253 (256)
++...|+.++|..+++.+..
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHH
Confidence 77788899999998887764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.9e-08 Score=82.74 Aligned_cols=217 Identities=13% Similarity=0.089 Sum_probs=170.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC-CCCC---CHhhHHHHHHHHHhcCCcchHHHHHH
Q 047518 20 LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFP---DLYTHSILINCFCKMGRVSHGFVVLG 95 (256)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 95 (256)
.+=|+++.+..|. +...|-..|....+.++.+.|.+++++.... ++.- -...|.++++.-..-|.-+...++|+
T Consensus 1444 aeDferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred HHHHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3445566565553 6778999999999999999999999998654 1111 23467777777777787788899999
Q ss_pred HHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHH
Q 047518 96 RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175 (256)
Q Consensus 96 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 175 (256)
++.+.. ..-..|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+.++-+.|.
T Consensus 1522 RAcqyc----------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1522 RACQYC----------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHHHhc----------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHH
Confidence 998851 2234688899999999999999999999987622 36778999999999999999999
Q ss_pred HHHHHHHHcCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 176 RLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.++.+..+.-.+ -........+..-.+.|+.+.+..+|+..... .+-....|+..++.=.++|+.+.++.+|++..+.
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 999999875211 12344556666677999999999999999876 3446778999999999999999999999999876
Q ss_pred CC
Q 047518 255 GC 256 (256)
Q Consensus 255 g~ 256 (256)
++
T Consensus 1664 ~l 1665 (1710)
T KOG1070|consen 1664 KL 1665 (1710)
T ss_pred CC
Confidence 63
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-08 Score=78.13 Aligned_cols=206 Identities=19% Similarity=0.214 Sum_probs=152.3
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhC-----CC-CCCHh-hHHHHHHHHHhcCCcchHHHHHHHHHhc---CCCCch
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNST-----GL-FPDLY-THSILINCFCKMGRVSHGFVVLGRILRS---CFTPDV 106 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 106 (256)
.+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|++++.. .+-++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~- 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED- 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-
Confidence 45666899999999999999999987654 21 23333 3445777899999999999999998863 11111
Q ss_pred hhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCch-HHHHHHHHHHhccCCHHHHHHHHH
Q 047518 107 VTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-----NV-KPNV-VTYTSVIRGFCYANDWNEAKRLFI 179 (256)
Q Consensus 107 ~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~ 179 (256)
.+.-..+++.|..+|.+.|++++|...++...+. |. .|.. ..++.+...|...+++++|..+++
T Consensus 279 ---------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 279 ---------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred ---------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 1123457888999999999999999998876431 21 1222 346777788899999999999998
Q ss_pred HHHHc---CCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCCCHHhHHHHHHHHHhcCChhHHH
Q 047518 180 EMMDQ---GVQPN----VVTFNVIMDELCKNGKMDEASSLLDLMIQH-----G--VRPDAFTYNTLLDGFCLTGRVNHAK 245 (256)
Q Consensus 180 ~~~~~---~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~ 245 (256)
...+. -+.++ ..+++.+...|...|++++|.+++++.... | ..-....++.+...|.+.++..+|.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 87642 12222 467899999999999999999999988742 1 1222456788889999999999999
Q ss_pred HHHHHHH
Q 047518 246 ELFVSME 252 (256)
Q Consensus 246 ~~~~~m~ 252 (256)
++|.+-+
T Consensus 430 ~l~~~~~ 436 (508)
T KOG1840|consen 430 QLFEEAK 436 (508)
T ss_pred HHHHHHH
Confidence 9987754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-07 Score=74.92 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=163.6
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
-..|++..|..++.+..+..|. +...|-.-+..-..+.++++|..+|.+.... .|+...|.--+....-.+..++|
T Consensus 595 w~agdv~~ar~il~~af~~~pn--seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN--SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 3458888888888888887665 6777888888888888888888888887765 46667776666666667788888
Q ss_pred HHHHHHHHhcCCCCchh---------------------hHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 91 FVVLGRILRSCFTPDVV---------------------TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---------------------~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.+++++.++. -|+-. +|..-++.|+...-.|-.|...=-+.|.+-.|..++++...+
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 8888777764 23222 222222256666777888888888888999999999998888
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----------------------------CCCcHHHHHHHHHHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-----------------------------VQPNVVTFNVIMDEL 200 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~ll~~~ 200 (256)
+++ +...|-..|+.=.+.|..+.|..++.+..+.- +.-|.+....+...+
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 765 78888889998889999999988887766531 112333444444555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
-...++++|.+.|.+..+.+ +.+..+|..+...+.++|.-++-.+++++.
T Consensus 828 w~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55556677777777766653 334456666666777777666666666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-08 Score=77.84 Aligned_cols=242 Identities=13% Similarity=0.090 Sum_probs=153.8
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.++.+...+++.+..++++.+....|. ....+-.-|.++...|+..+-..+-.++.+.- +....+|-.+..-|...|
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~dpf--h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKDPF--HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhCCC--CcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 345566778888888888888886664 55566667778888888777777777776652 334567877877777778
Q ss_pred CcchHHHHHHHHHhcC--CCCch-----------------hhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSC--FTPDV-----------------VTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~--~~~~~-----------------~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
..++|.++|.+..... +.|.- ..|...-+.++.....+--+..-|.+.++++.|.+.|.+.
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8888888887765431 11110 0111111111112122222334456666677777777666
Q ss_pred HhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCC----CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQ----PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
...- +-|+...+-+--.....+.+.+|..+|+..+.. .+. .-..+++.|..+|.+.+.+++|+..+++.....
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 5542 224555555555555667778888877776621 001 123457777888888888888888888877653
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+-+..++.++.-.|...|+++.|.+.|.+..
T Consensus 486 -~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 486 -PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred -CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5577788888888888888888888877654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-08 Score=82.46 Aligned_cols=193 Identities=18% Similarity=0.251 Sum_probs=136.3
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh----------cCCCHHHHHHH
Q 047518 57 SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------CKPDAITYNTI 126 (256)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----------~~~~~~~~~~l 126 (256)
.++..+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-+....+...++.++.+ -.|.+.+|+.|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 45677888999999999999999999999999988 88888887777777888888764 25678899999
Q ss_pred HHHHHhcCCHHH---HHHHHHHHH----hCCC-----------------CCchHHHHHHHHHHhccCCHHHHHHHH----
Q 047518 127 IDGLCKQGFVDK---AKELFLKMK----DKNV-----------------KPNVVTYTSVIRGFCYANDWNEAKRLF---- 178 (256)
Q Consensus 127 ~~~~~~~~~~~~---a~~~~~~~~----~~~~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~---- 178 (256)
..+|...|++.. +.+-+..+. ..|+ -||..+ .+.-....|-|+.+++++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999754 333222221 1222 122211 111112223333333332
Q ss_pred --------------------------HHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047518 179 --------------------------IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 179 --------------------------~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 232 (256)
.......-.|+..+|..++.+-..+|+.+.|..++.+|.+.|++.+..-|..|+
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 111111114788888889988889999999999999999999888888777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCC
Q 047518 233 DGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
-+ .++..-+..+++.|.+.||
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv 267 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGV 267 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcC
Confidence 66 7777788888888888875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-07 Score=77.58 Aligned_cols=230 Identities=13% Similarity=0.198 Sum_probs=160.7
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 047518 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST--GLFPDLYTHSILINCFCKMGRVSHGFVV 93 (256)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 93 (256)
++.|...|....+..|. |+..+--=.......+++..|+.+|...... ..+||+. ..+..++.+.++.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~--Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD--NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCc--chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 58899999998886653 5533332233334567899999999996544 3345543 2344677888999999999
Q ss_pred HHHHHhcCCCCchhhHHhhhh------------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 94 LGRILRSCFTPDVVTFTSLIK------------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ll~------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
|.++.+. .|+...-...+. ....++.+.+.|.+.|.-.|+++.+..+...+...
T Consensus 222 ~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 9988874 443221111111 23568888999999999999999999999888765
Q ss_pred CCC--CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh
Q 047518 150 NVK--PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227 (256)
Q Consensus 150 ~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 227 (256)
... .-...|-.+.++|...|++++|...|.+..+....-....+.-+...+.+.|+.+.+...|+.+.+. .+.+..+
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHH
Confidence 311 1234577888999999999999999988887632222344566788899999999999999998876 3556677
Q ss_pred HHHHHHHHHhcC----ChhHHHHHHHHHH
Q 047518 228 YNTLLDGFCLTG----RVNHAKELFVSME 252 (256)
Q Consensus 228 ~~~l~~~~~~~g----~~~~a~~~~~~m~ 252 (256)
...|...|+..+ ..+.|..++.+..
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 777777777665 3455555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.3e-08 Score=69.88 Aligned_cols=171 Identities=9% Similarity=-0.039 Sum_probs=102.6
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+...|+++.|...++++.+.. |+. +....++..+..++...|++++|...++.+.+..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~----------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY--PFS----------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc----------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 3455555556666666666666666665531 110 0011244555666666666666666666665543
Q ss_pred CCCch--HHHHHHHHHHhcc--------CCHHHHHHHHHHHHHcCCCCcHHH-----------------HHHHHHHHHhc
Q 047518 151 VKPNV--VTYTSVIRGFCYA--------NDWNEAKRLFIEMMDQGVQPNVVT-----------------FNVIMDELCKN 203 (256)
Q Consensus 151 ~~~~~--~~~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~~ll~~~~~~ 203 (256)
..... .++..+..++... |+.++|...++.+.+.... +... ...+...+.+.
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 21111 1233333333332 5566666666666654211 1111 12455678899
Q ss_pred CChhHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 204 GKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
|++++|...++...+.. .+.....+..+..++.+.|++++|..+++.+..+
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999998752 1224568889999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-10 Score=55.43 Aligned_cols=32 Identities=59% Similarity=1.060 Sum_probs=22.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777776666
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-07 Score=68.22 Aligned_cols=221 Identities=13% Similarity=0.101 Sum_probs=162.0
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC-ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc--
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV-- 87 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 87 (256)
...++.++|+.+++++++..|. +..+|+.-...+...| .+++++..++.+.+... .+..+|+.....+.+.+..
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 4567888999999999987775 6677887777777777 57999999999988753 3556777666666666653
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (256)
+++..+++++++. -+.+..+|+...-++.+.|++++++..++++.+.++. +..+|+.....+.+
T Consensus 125 ~~el~~~~kal~~---------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 125 NKELEFTRKILSL---------------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 5667777777764 2456778888888999999999999999999998765 66677766655544
Q ss_pred c---CC----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 168 A---ND----WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN----GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 168 ~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
. |. .++......+++... +-|...|+.+...+... +...+|.+++.+....+ +.+......|+..|+
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 4 22 246777777777664 34677888888888773 34566888888877653 446778888888887
Q ss_pred hcC------------------ChhHHHHHHHHHH
Q 047518 237 LTG------------------RVNHAKELFVSME 252 (256)
Q Consensus 237 ~~g------------------~~~~a~~~~~~m~ 252 (256)
... ..++|.+++..+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 267 EGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 632 2367888887774
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-08 Score=81.47 Aligned_cols=223 Identities=14% Similarity=0.134 Sum_probs=155.1
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.++++.|.++|..+.+..|. =+..|-.++......+...+|...+....... ..++..+..+...+.....+..|.+
T Consensus 509 l~~~~~A~e~Yk~Ilkehp~--YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEHPG--YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred hhhhhHHHHHHHHHHHHCch--hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccccc
Confidence 34666777777777775543 33345555544445566677777777765543 3355566666667777777777777
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK------------QGFVDKAKELFLKMKDKNVKPNVVTYTS 160 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (256)
-|....+.-.. .+|+.+.-+|.+.|.. .+..++|+++|.+..+..++ |...-|.
T Consensus 586 ~f~~i~~~~~~-------------~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 586 KFETILKKTST-------------KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHHHHhhhcc-------------CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 66655553111 1333344444444332 34578899999988887654 7777788
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcC
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 239 (256)
+...++..|++..|..+|.+..+... -+..+|..+..+|...|++..|.++|+...+ ..-..+..+...|..++.+.|
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 88888999999999999999988743 3556788999999999999999999987764 333457778899999999999
Q ss_pred ChhHHHHHHHHHHh
Q 047518 240 RVNHAKELFVSMES 253 (256)
Q Consensus 240 ~~~~a~~~~~~m~~ 253 (256)
.+.+|.+.+...+.
T Consensus 731 ~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 731 KLQEAKEALLKARH 744 (1018)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999887766543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-07 Score=70.46 Aligned_cols=126 Identities=17% Similarity=0.093 Sum_probs=86.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----------C---------
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----------G--------- 185 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~--------- 185 (256)
-...+...+++++|.-.|+......+ -+...|..++.+|...|.+.+|...-+...+. |
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCch
Confidence 34556666667777666666655421 25566666776666666666665554443221 0
Q ss_pred --------------CCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 186 --------------VQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 186 --------------~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
+.|+ ....+.+...|...|....+..+++..... .||....+.|.+.+...+.+.+|++.|..
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1233 234566777888999999999999988874 78999999999999999999999998877
Q ss_pred HHhc
Q 047518 251 MESM 254 (256)
Q Consensus 251 m~~~ 254 (256)
....
T Consensus 497 ALr~ 500 (564)
T KOG1174|consen 497 ALRQ 500 (564)
T ss_pred HHhc
Confidence 6543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.7e-08 Score=72.21 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.......+.+|.+.++++.|.+.++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~ln 205 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLN 205 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHH
Confidence 45566677889999999999999999998763 33444555555432 34689999999998765 567888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV-NHAKELFVSMES 253 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 253 (256)
.+..++...|++++|.+++.+....+ +-++.+...++.+....|+. +.+.+++.+++.
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999999999987654 44667777888888888888 567778777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=73.77 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=114.1
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHhhCCCC-CC-HhhHHHHHHHH
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPP-VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PD-LYTHSILINCF 81 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~ 81 (256)
..|..+...|++++|...|+++....|..+. ..++..+..++...|+++.|...++.+.+.... |. ..++..+..++
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 3456677899999999999999887765232 246778889999999999999999999876321 11 12455555666
Q ss_pred Hhc--------CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 82 CKM--------GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 82 ~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
... |++++|.+.++.+.+. .|+ +...+..+... ..+...
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~-------------~~~~~~a~~~~--------------~~~~~~---- 164 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRR--YPN-------------SEYAPDAKKRM--------------DYLRNR---- 164 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHH--CCC-------------ChhHHHHHHHH--------------HHHHHH----
Confidence 554 6778888888888764 222 11111111100 000000
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.......+...+.+.|++.+|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 165 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 000112344556777788888877777776521 123456777777777888888888777776654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-07 Score=75.45 Aligned_cols=245 Identities=13% Similarity=0.105 Sum_probs=184.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHH----HHHHHHccCChHHHHHHHHHHhhC-CCCCCHhhHHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNI----MLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCF 81 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 81 (256)
...|-+.|+...|.+.|.++.+..|+ .|..-+.. .+..+...++-+.|++.++..... +-..+...+++++..+
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 34566789999999999999998884 66554443 455667777779999998887663 2234566788888888
Q ss_pred HhcCCcchHHHHHHHHHhcCC---------------------------CCchhhHHhhhh--------------------
Q 047518 82 CKMGRVSHGFVVLGRILRSCF---------------------------TPDVVTFTSLIK-------------------- 114 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~ll~-------------------- 114 (256)
.....++.+............ .++..++..++.
T Consensus 327 l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~ 406 (895)
T KOG2076|consen 327 LKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED 406 (895)
T ss_pred HHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh
Confidence 888889888888777766222 222222111111
Q ss_pred --hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHH
Q 047518 115 --VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192 (256)
Q Consensus 115 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 192 (256)
.+..++..|.-+..+|...|.+.+|+.+|..+.....--+...|-.+..+|...|..+.|.+.++..+... +.+...
T Consensus 407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~ 485 (895)
T KOG2076|consen 407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDA 485 (895)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhh
Confidence 13345678888999999999999999999999887555567889999999999999999999999999863 334556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH--------HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMI--------QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
-..|...+-+.|+.++|.+++..+. ..+..|...........+.+.|+.++-+.....|..
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6677788899999999999999854 233566666667777888899999987777666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-08 Score=80.54 Aligned_cols=196 Identities=11% Similarity=0.049 Sum_probs=107.1
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
..+.+.|-...|..+|+++. .|...+.+|...|+..+|..+..+..+. +||...|..+.+.....--+
T Consensus 406 ell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHH
Confidence 44566777888888888763 3777888888889888888888887774 67888888888887777777
Q ss_pred chHHHHHHHHHhc-----CCCC----c----hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 047518 88 SHGFVVLGRILRS-----CFTP----D----VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 88 ~~a~~~~~~~~~~-----~~~~----~----~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
++|.++.+....+ |..+ + ...+..-+...+....+|-.+..+..+.++++.|.+.|.......+ -+
T Consensus 474 EkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P-d~ 552 (777)
T KOG1128|consen 474 EKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP-DN 552 (777)
T ss_pred HHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC-Cc
Confidence 7888777664432 0000 0 0001111111222333444444444444444444444444443321 13
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 155 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
...||.+-.+|.+.++..+|...+++..+.+ .-+-..|...+....+.|.+++|.+.+.++.
T Consensus 553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 3344444444444444444544444444443 2233344444444444444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=53.21 Aligned_cols=32 Identities=50% Similarity=0.948 Sum_probs=17.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-06 Score=69.55 Aligned_cols=207 Identities=13% Similarity=0.166 Sum_probs=137.1
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh--------
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------- 114 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-------- 114 (256)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++++ |+...|-..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567899999999999875544 33345567778889999999999999999999873 44333322221
Q ss_pred --------------------------------------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 115 --------------------------------------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 115 --------------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
..+.-+.+|+.|-..|......+-...++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 001122344444444443333334444444
Q ss_pred HHHhC----C----------CCCch--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChh
Q 047518 145 KMKDK----N----------VKPNV--VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 145 ~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~ 207 (256)
..... + -+|+. .++..+.+.|...|++++|+.++++.++. +|+ ...|..-...+-+.|++.
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHH
Confidence 43321 1 12333 34466677788888888888888888877 344 667777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
+|.+.++..+..+ .-|-..-+-.+..+.++|+.++|.+++....+.+
T Consensus 246 ~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 246 EAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 8888888888764 2355566667777788888888888877765544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-07 Score=64.25 Aligned_cols=156 Identities=11% Similarity=0.140 Sum_probs=113.0
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHH
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 122 (256)
+..|...|+++.+....+.+. ... ..+...++.+++...+++.++. -+.+...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~-----~~~-------~~~~~~~~~~~~i~~l~~~L~~---------------~P~~~~~ 75 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA-----DPL-------HQFASQQTPEAQLQALQDKIRA---------------NPQNSEQ 75 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh-----Ccc-------ccccCchhHHHHHHHHHHHHHH---------------CCCCHHH
Confidence 346677787777543331110 011 1222345555666666665553 3567889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HhccCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG-FCYAND--WNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
|..+...|...|++++|...|++....... +...+..+..+ +...|+ .++|.+++++..+.+. -+...+..+...
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~ 153 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASD 153 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHH
Confidence 999999999999999999999999887654 77777777776 467677 5999999999998853 367888999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
+...|++++|...|+.+.+.. +|+..-+
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 999999999999999998863 5555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-06 Score=68.95 Aligned_cols=237 Identities=11% Similarity=0.020 Sum_probs=123.3
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
.+.+.+.++-|..+|...++..|. +...|......=-..|..+....++++....- +-....|-.....+...|+..
T Consensus 525 ~~~k~~~~~carAVya~alqvfp~--k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQVFPC--KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVP 601 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcH
Confidence 345666677777777777765554 55566666666666677777777777776652 223334444555566667777
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhh-------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIK-------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~-------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.|..++.++.+..-. +...+-..++ ...++..+|..-+..-.-.++.++|.+++++..+.
T Consensus 602 ~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 602 AARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 777777666654110 1111000000 11233333333333333344444444444444332
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
.+.-...|..+-+.+.+.++.+.|...|..-.+. ++-....|..+...=.+.|.+-.|..+|+..+-.+ +-+...|.
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 1112223333334444444444444444333322 22234455555555556666667777776666543 44666777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 047518 230 TLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
..|+.=.+.|..+.|..++.+..
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777777776655443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-07 Score=66.41 Aligned_cols=120 Identities=11% Similarity=0.135 Sum_probs=79.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHH
Q 047518 49 NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~ 128 (256)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---------------P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---------------GENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHH
Confidence 455566666666665553 4466677777777777777777777777777642 234555666666
Q ss_pred H-HHhcCC--HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 129 G-LCKQGF--VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 129 ~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
+ +...|+ .++|..++++..+.+.. +..++..+...+...|++++|...|+++.+..
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5 355565 47777777777776544 55666667777777777777777777777653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-06 Score=67.29 Aligned_cols=232 Identities=15% Similarity=0.114 Sum_probs=172.0
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHH
Q 047518 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95 (256)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 95 (256)
-.++++.+++..+.++..|+ +...+.--|+..++.+.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~--~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPL--VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34577888888887776443 3444555667788899999999998888666788888888888888889888888877
Q ss_pred HHHhc-CCC------------------CchhhHHhhhh------------------------------------------
Q 047518 96 RILRS-CFT------------------PDVVTFTSLIK------------------------------------------ 114 (256)
Q Consensus 96 ~~~~~-~~~------------------~~~~~~~~ll~------------------------------------------ 114 (256)
..... |.. ....|...++.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 76543 110 00111111110
Q ss_pred ---------------------hcCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 047518 115 ---------------------VCKPD------AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167 (256)
Q Consensus 115 ---------------------~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (256)
...|+ ...|......+.+.+..++|...+.+..... +.....|...-..+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH
Confidence 01112 2355566778888999999998888887764 3366677777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH--HHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047518 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS--LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245 (256)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 245 (256)
.|.+.+|.+.|......+ +-+.....++..++.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|.
T Consensus 697 ~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHH
Confidence 999999999999988764 2246688899999999999888888 999999875 568899999999999999999999
Q ss_pred HHHHHHH
Q 047518 246 ELFVSME 252 (256)
Q Consensus 246 ~~~~~m~ 252 (256)
+.|....
T Consensus 775 ecf~aa~ 781 (799)
T KOG4162|consen 775 ECFQAAL 781 (799)
T ss_pred HHHHHHH
Confidence 9987654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-06 Score=66.76 Aligned_cols=234 Identities=13% Similarity=0.139 Sum_probs=150.4
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.|++.-|.++|+.... .. |+...|++.|..=.+-+.++.|..++++..-. .|+..+|.-....-.+.|....+..
T Consensus 154 LgNi~gaRqiferW~~--w~-P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WE-PDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 5788899999999876 33 78899999999999999999999999998765 4788888777777777777777777
Q ss_pred HHHHHHhc-CCC-CchhhHHhhhh--------------------------------------------------------
Q 047518 93 VLGRILRS-CFT-PDVVTFTSLIK-------------------------------------------------------- 114 (256)
Q Consensus 93 ~~~~~~~~-~~~-~~~~~~~~ll~-------------------------------------------------------- 114 (256)
+|..+.+. |-. .+...+.++..
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 77766542 100 00011111110
Q ss_pred ------------------------------------------hcC-----------------------------------
Q 047518 115 ------------------------------------------VCK----------------------------------- 117 (256)
Q Consensus 115 ------------------------------------------~~~----------------------------------- 117 (256)
.++
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 000
Q ss_pred ---------CCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 118 ---------PDAITY----NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 118 ---------~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
....+| -.....-.++.++..|.+++.... |.-|-..+|...|..=.+.++++.+..+++..++.
T Consensus 389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 011111 111112223344444444444332 44567777777777777888888888888888877
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
+ +-|..+|......=...|+.+.|..+|.-..++. +......|.+.|+.=...|.+++|..+++++.+.
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 5 3466777777777777788888888888777642 1222335555666556777888888887777653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-07 Score=72.09 Aligned_cols=217 Identities=13% Similarity=0.073 Sum_probs=150.5
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 91 (256)
.|+..+-..+=.++.+..|. .+.+|-.+.--|.-.|+..+|.+.|.+..... |. ...|-.....|+-.+..++|+
T Consensus 291 l~~~n~Lf~lsh~LV~~yP~--~a~sW~aVg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAm 366 (611)
T KOG1173|consen 291 LGKSNKLFLLSHKLVDLYPS--KALSWFAVGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAM 366 (611)
T ss_pred hcccchHHHHHHHHHHhCCC--CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHH
Confidence 34444444444556565554 56677777777777777777777777654432 22 246666677777777777777
Q ss_pred HHHHHHHhc--C-CCCchhhH----------------HhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 047518 92 VVLGRILRS--C-FTPDVVTF----------------TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--- 149 (256)
Q Consensus 92 ~~~~~~~~~--~-~~~~~~~~----------------~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 149 (256)
..|..+.+. | ..|...+- ...+...+.|+...+-+.......+.+.+|..+|......
T Consensus 367 aaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 367 AAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 766665542 1 12221111 1111145678888888888888899999999999987621
Q ss_pred -CC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 150 -NV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 150 -~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
+. ..-..+++.|-.+|.+.+.+++|+..++...... +-+..++..+.-.|...|+++.|.+.|.+... +.|+-.
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~ 523 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNI 523 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccH
Confidence 11 1134568888999999999999999999999874 56889999999999999999999999999886 467776
Q ss_pred hHHHHHHHHH
Q 047518 227 TYNTLLDGFC 236 (256)
Q Consensus 227 ~~~~l~~~~~ 236 (256)
+...++..+.
T Consensus 524 ~~~~lL~~ai 533 (611)
T KOG1173|consen 524 FISELLKLAI 533 (611)
T ss_pred HHHHHHHHHH
Confidence 6666665443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-06 Score=67.40 Aligned_cols=196 Identities=13% Similarity=0.021 Sum_probs=129.9
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
+...|+++.+...+....+..+...+.. ........+...|++++|.+.+++..+.. +.+...+.. ...+...+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~ 93 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFS 93 (355)
T ss_pred HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccc
Confidence 3445778888888887776655423321 22233445677899999999999988763 333334443 22333334333
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
.+.....+.... ..+ ..+........+...+...|++++|...+++..+.... +...+..+...+...
T Consensus 94 ~~~~~~~~~l~~-~~~----------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 94 GMRDHVARVLPL-WAP----------ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred cCchhHHHHHhc-cCc----------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 333333333332 111 12334445566777889999999999999999887543 566778888899999
Q ss_pred CCHHHHHHHHHHHHHcCC-CCcH--HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 169 NDWNEAKRLFIEMMDQGV-QPNV--VTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
|++++|...+++...... .|+. ..|..+...+...|++++|..++++....
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999887532 1232 34557888899999999999999998654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-07 Score=66.71 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=133.9
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
|... ..+-..+...|+-+....+........ +.|.......+....+.|++..|+..+++....
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-------------- 129 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-------------- 129 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------------
Confidence 4444 667778888888888888877754332 345667777889999999999999999999874
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
-++|..+|+.+.-+|.+.|+.++|..-|.+..+.-.. +...++.+.-.+.-.|+.+.|..++......+ .-|...-.
T Consensus 130 -~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~ 206 (257)
T COG5010 130 -APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQ 206 (257)
T ss_pred -CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHH
Confidence 2578889999999999999999999999998876433 55667888888888999999999999998875 34777888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+.......|++++|.++...-..
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHhhcCChHHHHhhcccccc
Confidence 888889999999999999876553
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-06 Score=60.18 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=131.3
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
|..+ ..+-..+...|+-+....+..+.... .+.|.......+....+.|++.+|...+++....
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---------------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA---------------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc---------------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3444 55666777778888777777665432 2345566777899999999999999999999887
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
. ++|..+|+.+--+|.+.|+.+.|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+ .-+..+-.
T Consensus 130 ~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~ 206 (257)
T COG5010 130 A-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQ 206 (257)
T ss_pred C-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHH
Confidence 5 4699999999999999999999999999999873 3356788999999999999999999999998764 33677778
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 047518 230 TLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~ 249 (256)
.+.......|++++|.++..
T Consensus 207 NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHhhcCChHHHHhhcc
Confidence 88888899999999988653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-06 Score=74.14 Aligned_cols=215 Identities=8% Similarity=0.019 Sum_probs=134.9
Q ss_pred CCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCc----
Q 047518 31 PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD---- 105 (256)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 105 (256)
..+.+...|..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++...+..+ .+...-....
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 34467788999999999999999999999977766 344 34555555577888888777766 4433211111
Q ss_pred hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
+.-+...+.....+..++..+..+|-+.|+.++|..+|+++.+..+. |..+.|.+...|+.. ++++|.+++.+.+..-
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 11122222234455568888999999999999999999999998744 888999999999888 9999999988876541
Q ss_pred CCCcHHHHHHHHHHH-----HhcCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 186 VQPNVVTFNVIMDEL-----CKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 186 ~~~~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+ +..-|+.+...+ ....+.+.-.++.+.+... |..--+.++..+-..|...++|+++..+++.+.+
T Consensus 180 i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 180 I--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred H--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 1 111111111110 1122233333333333322 2222333444555566666666666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.6e-06 Score=71.06 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=104.3
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
..+...+..|.....+.|.+++|..+++.+.+. .+.+......+...+.+.+++++|...+++..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 345667777777777888888888888877764 13345567777778888888888888888887
Q ss_pred hCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh
Q 047518 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227 (256)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 227 (256)
...+. +......+..++...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.- .|...-
T Consensus 148 ~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~ 224 (694)
T PRK15179 148 SGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARK 224 (694)
T ss_pred hcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHH
Confidence 76543 55666777777788888888888888887743 2346777777788888888888888888777642 344455
Q ss_pred HHHHH
Q 047518 228 YNTLL 232 (256)
Q Consensus 228 ~~~l~ 232 (256)
|+..+
T Consensus 225 ~~~~~ 229 (694)
T PRK15179 225 LTRRL 229 (694)
T ss_pred HHHHH
Confidence 55443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-06 Score=65.90 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=79.5
Q ss_pred ccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHH
Q 047518 4 KSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINCFC 82 (256)
Q Consensus 4 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 82 (256)
...|++.++.|+++.|+..|.+.+...| +|...|..-..+|...|++++|++=-.+-.+. .|+. ..|.....++.
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALF 81 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHH
Confidence 4567888999999999999999988766 49999999999999999999998877777665 5664 58999999999
Q ss_pred hcCCcchHHHHHHHHHhc
Q 047518 83 KMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~ 100 (256)
-.|++++|+..|.+-++.
T Consensus 82 ~lg~~~eA~~ay~~GL~~ 99 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEK 99 (539)
T ss_pred hcccHHHHHHHHHHHhhc
Confidence 999999999998876653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.4e-07 Score=59.97 Aligned_cols=109 Identities=14% Similarity=0.021 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 20 LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
..+|++..+..|. .+......+.+.|++++|...|+...... +.+...|..+..++...|++++|...|++...
T Consensus 13 ~~~~~~al~~~p~-----~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPE-----TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3455555553322 24445666677777777777777776653 33556667777777777777777777777766
Q ss_pred cCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 100 ~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.. +.+...+..+..++...|++++|...|+.....
T Consensus 87 l~---------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 87 LD---------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cC---------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 31 235556666677777777777777777776665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-06 Score=57.57 Aligned_cols=106 Identities=10% Similarity=-0.063 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 201 (256)
.+..+...+...|++++|...|+......+. +...|..+..++...|++++|...|+...... +.+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 4556778889999999999999999887543 78889999999999999999999999999874 457888999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 047518 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNT 230 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (256)
..|++++|...|+...+.. +.+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~-p~~~~~~~~ 131 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS-YADASWSEI 131 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 9999999999999998853 223444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-06 Score=58.06 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
+.+......+...+...|++++|...|+.+...+. .+...+..+...+...|++++|...++...+.+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 33455667778889999999999999999988654 377888888999999999999999999988775 4467788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
..++...|++++|...|+...+. .|+...+..+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 88999999999999999998875 4555444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-05 Score=70.12 Aligned_cols=218 Identities=14% Similarity=0.106 Sum_probs=168.8
Q ss_pred CCCcCChhhHHHHHHHHHHhC-CCC--CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 10 DITTITPNEALCIFDYMLRMH-PSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
.++.++.+.|++++++.+..- +.. --...|.++++.-..-|.-+...++|+++.+. -.....|..|...|.+.+.
T Consensus 1468 ~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek 1545 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEK 1545 (1710)
T ss_pred HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhc
Confidence 466788999999999987642 221 11245888888777778888999999999876 2334678899999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGF 165 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 165 (256)
+++|.++++.|.+. +.....+|...+..+.+.++-++|..++.+..+.=++- ........++.-
T Consensus 1546 ~~~A~ell~~m~KK---------------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1546 NDEADELLRLMLKK---------------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred chhHHHHHHHHHHH---------------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 99999999999985 34567789999999999999999999999987752221 233445555555
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCChhH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF--TYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 243 (256)
.+.|+.+.+..+|+...... +-....|+.+++.=.+.|+.+.+..+|++....++.|... .|...+..=-..|+-..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 78899999999999999774 3356789999999999999999999999999988877543 45555555455566554
Q ss_pred HH
Q 047518 244 AK 245 (256)
Q Consensus 244 a~ 245 (256)
+.
T Consensus 1690 vE 1691 (1710)
T KOG1070|consen 1690 VE 1691 (1710)
T ss_pred HH
Confidence 43
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-07 Score=69.54 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=113.3
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHH
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 122 (256)
...+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.. .|.... ..
T Consensus 109 A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~-----------qL 169 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILT-----------QL 169 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHH-----------HH
T ss_pred HHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHH-----------HH
Confidence 34566678899888887542 356777788899999999999999999998742 221111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
..+.+..+.-.+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+ +-+..+...++.+...
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHH
Confidence 223333344445799999999998776 45688889999999999999999999999988765 3366778888888888
Q ss_pred cCCh-hHHHHHHHHHHHC
Q 047518 203 NGKM-DEASSLLDLMIQH 219 (256)
Q Consensus 203 ~g~~-~~a~~~~~~~~~~ 219 (256)
.|+. +.+.+.+.++...
T Consensus 248 ~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp TT-TCHHHHHHHHHCHHH
T ss_pred hCCChhHHHHHHHHHHHh
Confidence 8888 6678888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.5e-06 Score=68.08 Aligned_cols=143 Identities=10% Similarity=0.080 Sum_probs=95.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
++..+-.|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|...+++.....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------------ 150 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------------ 150 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------------
Confidence 5666777777777777777777777777765 343 4466666777777777777777777777641
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
+.+......+..++...|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+.. .|....|
T Consensus 151 ---p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~ 225 (694)
T PRK15179 151 ---SSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKL 225 (694)
T ss_pred ---CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHH
Confidence 33556666677777777777777777777776432 246667777777777777777777777777652 3344444
Q ss_pred HHH
Q 047518 194 NVI 196 (256)
Q Consensus 194 ~~l 196 (256)
+..
T Consensus 226 ~~~ 228 (694)
T PRK15179 226 TRR 228 (694)
T ss_pred HHH
Confidence 443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-06 Score=66.61 Aligned_cols=191 Identities=13% Similarity=0.074 Sum_probs=143.8
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHH
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 122 (256)
..-+.+.|++..|.-.|+...+.. +-+...|..|.......++-..|+..+++.++. +|+ +..+
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~-------------Nlea 355 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPT-------------NLEA 355 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCc-------------cHHH
Confidence 344567889999999999988774 346789999999999999989999999998874 333 3344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH------------------------------------------hCCCCCchHHHHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMK------------------------------------------DKNVKPNVVTYTS 160 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~------------------------------------------~~~~~~~~~~~~~ 160 (256)
.-.|...|...|.-..|++.++.-. ..+..+|..+...
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~ 435 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG 435 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence 4455555555555555555554432 2222356666777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTG 239 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 239 (256)
|--.|.-.|++++|.+.|+.++... +-|..+||.|...++...+.++|+..|.+.++. .|+ +++...|.-+|...|
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhh
Confidence 7777888899999999999999874 346789999999999999999999999999875 565 456777888899999
Q ss_pred ChhHHHHHHHHHH
Q 047518 240 RVNHAKELFVSME 252 (256)
Q Consensus 240 ~~~~a~~~~~~m~ 252 (256)
.+++|.+.|=..+
T Consensus 513 ~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 513 AYKEAVKHLLEAL 525 (579)
T ss_pred hHHHHHHHHHHHH
Confidence 9999998775544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-05 Score=61.38 Aligned_cols=234 Identities=12% Similarity=0.120 Sum_probs=140.1
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCcchH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a 90 (256)
+.++++.|.++|+..+.... .+...|-..+.+=.+++....|..+|++.... -|-+ ..|.-.+..--..|+...|
T Consensus 85 sq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHH
Confidence 45778899999999987554 47888888888888999999999999988765 3332 3444444455567888889
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhh-------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIK-------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-N 150 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~-------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 150 (256)
.++|++..+- .|+...|.+.+. .+.|++..|-.....=.++|+...|..+|....+. |
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 9999888763 555555555443 34455555555555555566666666666554432 1
Q ss_pred C-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHH--------HHHHHC
Q 047518 151 V-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLL--------DLMIQH 219 (256)
Q Consensus 151 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~--------~~~~~~ 219 (256)
- ..+...+.++..-=.++..++.|..+++-.++. ++.+ ...|..+...=-+-|+.....+.. +.+++.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 011222333333333445555555555555544 1112 233443333333444433333222 222222
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+ +.|..+|.-.+..-...|+.+...+++++.+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 2 45666777777777778888888888887764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-06 Score=67.26 Aligned_cols=126 Identities=19% Similarity=0.214 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
.....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++.+..+.. +-+...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345567778888999999999999999874 44 44557888888899999999999999763 44677778888889
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
...++++.|..+.+++.... +-+..+|..|..+|.+.|++++|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999862 4456699999999999999999999887653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-06 Score=62.69 Aligned_cols=236 Identities=15% Similarity=0.176 Sum_probs=158.1
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHH-HHHHHHhcCCc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI-LINCFCKMGRV 87 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~ 87 (256)
..++..++++|++++..-.+..+. +......+..+|.+..++..|-..++++-.. -|...-|.. -.+.+.+.+.+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhccc
Confidence 346778899999998887776553 7777889999999999999999999999775 455544432 24566677888
Q ss_pred chHHHHHHHHHhc-CC--------------CCchhhHHhhhhhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 88 SHGFVVLGRILRS-CF--------------TPDVVTFTSLIKVCK--PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 88 ~~a~~~~~~~~~~-~~--------------~~~~~~~~~ll~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
..|+.+...|... .+ ..|..-..+++...+ .+..+.+...-...+.|++++|.+-|+...+-+
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 8888888777652 00 111111122222222 344555555566778999999999999887764
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-------------CcH---------------HHHHHHHHHHHh
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-------------PNV---------------VTFNVIMDELCK 202 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~---------------~~~~~ll~~~~~ 202 (256)
---+...|+..+..| +.++.+.|++...++++.|++ ||. ..+|.-...+.+
T Consensus 175 GyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq 253 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ 253 (459)
T ss_pred CCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence 444667788777655 678999999999999887653 221 112222233456
Q ss_pred cCChhHHHHHHHHHHHC---------------------------------CC-CCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 203 NGKMDEASSLLDLMIQH---------------------------------GV-RPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~~~---------------------------------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
.|+++.|.+.+-+|.-+ ++ +....||..++-.|+++.-++.|-+++
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 77888777777665421 11 123467888888888888888777765
Q ss_pred H
Q 047518 249 V 249 (256)
Q Consensus 249 ~ 249 (256)
-
T Consensus 334 A 334 (459)
T KOG4340|consen 334 A 334 (459)
T ss_pred h
Confidence 4
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.8e-05 Score=59.11 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=140.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-CcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG-RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
+..+-..+...+..++|+.+.+++++.. +-+..+|+....++...+ .+++++..++++.+.. +
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---------------p 103 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---------------P 103 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---------------C
Confidence 4445556667788999999999998863 224457777766777777 5789999999888752 3
Q ss_pred CCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFV--DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
.+..+|+.....+.+.|.. ++++.+++.+.+...+ +..+|+...-++...|+++++++.++++++.+.. |...|+.
T Consensus 104 knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~ 181 (320)
T PLN02789 104 KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQ 181 (320)
T ss_pred cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHH
Confidence 4455677665556666653 7789999899887765 8889998888999999999999999999988644 6677777
Q ss_pred HHHHHHhc---CCh----hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----CChhHHHHHHHHHHh
Q 047518 196 IMDELCKN---GKM----DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT----GRVNHAKELFVSMES 253 (256)
Q Consensus 196 ll~~~~~~---g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 253 (256)
....+.+. |.. ++......++.... +-+...|+.+...+... +...+|.+.+.+..+
T Consensus 182 R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 182 RYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 66666554 323 45666666666653 45677788777777663 344567777766554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.9e-06 Score=65.84 Aligned_cols=224 Identities=15% Similarity=0.113 Sum_probs=137.5
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|.+..+.+.+.|++++|.+...+++..+|. +...+..=+-++.+.+++++|+.+.+.-... ..+...+-.-.-+..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 344566778899999999999999987765 5566777777889999999999766543321 111111122334556
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
+.+..++|+..++ |..+ .+..+...-...+.+.|++++|.++|+.+.+.+.. + +...+
T Consensus 91 rlnk~Dealk~~~-----~~~~-------------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~ 148 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDR-------------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEER 148 (652)
T ss_pred HcccHHHHHHHHh-----cccc-------------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHH
Confidence 8899999998887 2222 22334445567889999999999999999877543 2 22222
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCH------H-
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQH-------GVRPDA------F- 226 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~------~- 226 (256)
.+-+.. ...+... +.+......| +...+-.....+...|++.+|+++++...+. +-.-+. .
T Consensus 149 r~nl~a--~~a~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 149 RANLLA--VAAALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHH--HHHhhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 211100 0011111 1122222233 2233333445677899999999999988321 111111 1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
.-..+.-.+...|+-++|..++...++..
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 12234445678899999999998887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-05 Score=62.58 Aligned_cols=226 Identities=15% Similarity=0.112 Sum_probs=132.7
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|.-.|-.+..-|+-++|.+....-.+..+ .+.+.|+.+.-.+...+++++|++.|......+ +.|...|.-+.-.-+
T Consensus 44 lAmkGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~ 120 (700)
T KOG1156|consen 44 LAMKGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQI 120 (700)
T ss_pred HHhccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 33444455555666666666655555333 355666666666666666666666666665553 334455555554445
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSV 161 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 161 (256)
+.++++.....-.++.+ ..+.....|..+..++.-.|++..|..+.+...+.. -.|+...|...
T Consensus 121 QmRd~~~~~~tr~~LLq---------------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQ---------------LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS 185 (700)
T ss_pred HHHhhhhHHHHHHHHHH---------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 55555555544444444 234455678888889999999999999999887664 24555555333
Q ss_pred H------HHHhccCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH-HHHH
Q 047518 162 I------RGFCYANDWNEAKRLFIEMMDQGVQPNVV-TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN-TLLD 233 (256)
Q Consensus 162 i------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 233 (256)
. ......|..+.|.+.+..-... ..|.. .-..-...+.+.+++++|..++..+... .||-.-|. .+..
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH
Confidence 3 2234567777777766655443 12222 2234455677888899999999888876 35544444 4444
Q ss_pred HHHhcCChhHHH-HHHHH
Q 047518 234 GFCLTGRVNHAK-ELFVS 250 (256)
Q Consensus 234 ~~~~~g~~~~a~-~~~~~ 250 (256)
++.+-.+.-++. .+|..
T Consensus 262 ~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHhhhHHHHHHHHHH
Confidence 443333333333 34443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-06 Score=57.26 Aligned_cols=110 Identities=11% Similarity=0.036 Sum_probs=89.5
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
.++........ +......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34455544322 34556667788889999999999999998865 4477889999999999999999999999988764
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 222 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
+.+...+..+..+|...|++++|.+.+++..+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556788888899999999999999999987764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6e-06 Score=66.02 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=47.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
.++..+-+.|+++.|...++..+.+ +|+ ...|..=.+.+...|+++.|..++++..+.+ .+|...-.--..-..++
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 3445555556666666666655554 333 2233344455555666666666666555542 33333333344444455
Q ss_pred CChhHHHHHHHHHHhcC
Q 047518 239 GRVNHAKELFVSMESMG 255 (256)
Q Consensus 239 g~~~~a~~~~~~m~~~g 255 (256)
++.++|.++.....+.|
T Consensus 453 n~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREG 469 (700)
T ss_pred cccHHHHHHHHHhhhcc
Confidence 55555555555554443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.8e-06 Score=55.22 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV--VTFNVIM 197 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll 197 (256)
.|..++..+ ..++...+...++.+......- .....-.+...+...|++++|...|+.+......|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 455555555 4889999999999998864321 1233344557788999999999999999987533332 3455578
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
..+...|++++|...++..... ......+......|.+.|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8889999999999999775433 334556778888999999999999999864
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.1e-05 Score=54.15 Aligned_cols=189 Identities=12% Similarity=0.077 Sum_probs=96.3
Q ss_pred cCChhhHHHHHHHHHHhCCC---CCCc-ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 13 TITPNEALCIFDYMLRMHPS---PPPV-SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
..++++..+++.++....+. .++. ..|..++-+....|+.+.|...++.+...= +-+..+-..-...+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 44566666666665442221 1122 123444445555666666666666665542 111122111122233456666
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
+|+++|+.+++.. +.|.+++-.-+.+.-..|..-+|++-+....+. +..|...|.-+...|...
T Consensus 104 ~A~e~y~~lL~dd---------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 104 EAIEYYESLLEDD---------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSE 167 (289)
T ss_pred hHHHHHHHHhccC---------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhH
Confidence 6666666666542 234445555455555555555666666555554 334666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG---KMDEASSLLDLMIQH 219 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~ 219 (256)
|++++|.-.++++.-.. +.+...+..+...+-..| +...+.+.|.+..+.
T Consensus 168 ~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred hHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 66666666666666542 234444444444443333 344556666665554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00011 Score=59.33 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=98.9
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
.+.+|++..-...|+..+..-|...-..+|...+......+-++-+.+++++..+. ++..-..-+..+...+++++
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHH
Confidence 45678888889999998887766555678999999999999999999999998865 34446777888888899999
Q ss_pred HHHHHHHHHhcCC------CCchhhHHhhh-------------------h-h--cCC--CHHHHHHHHHHHHhcCCHHHH
Q 047518 90 GFVVLGRILRSCF------TPDVVTFTSLI-------------------K-V--CKP--DAITYNTIIDGLCKQGFVDKA 139 (256)
Q Consensus 90 a~~~~~~~~~~~~------~~~~~~~~~ll-------------------~-~--~~~--~~~~~~~l~~~~~~~~~~~~a 139 (256)
|.+.+...+.... +.+...|..+. + + .-+ -...|+.|.+.|.+.|.+++|
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9888887764311 11111111111 1 0 112 235789999999999999999
Q ss_pred HHHHHHHHhC
Q 047518 140 KELFLKMKDK 149 (256)
Q Consensus 140 ~~~~~~~~~~ 149 (256)
.++|++....
T Consensus 268 rDvyeeai~~ 277 (835)
T KOG2047|consen 268 RDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00014 Score=57.55 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
+|..+++.-.+...++.|..+|.+..+.+..+ .+..+++++.-|| .++..-|.++|+--.+. ..-+..-....++.+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 45556666666777777777887777766655 5566666666654 46777788887775554 223444556667777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
...++-..+..+|++....++.|+ ...|..++.-=..-|+...++++-+++.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 778888888888888877755544 3578888877777888888877766654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-05 Score=55.82 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+.+..|.-+|++|.++ .+|+..+.+....++...|++++|..++++....
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455555555555543 2345555555555555555555555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00013 Score=56.80 Aligned_cols=119 Identities=11% Similarity=0.047 Sum_probs=76.9
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 047518 81 FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (256)
+...|+++.|+..++.++.. .+.|+..+......+.+.++.++|.+.++.+....+. .....-.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~ 379 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---------------QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLN 379 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHH
Confidence 34556666666666665553 2344555566667777777777777777777766322 2445555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
+.+++.+.|++.+|..+++...... +-|...|..|..+|...|+..++.....+.
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6677777777777777777777653 446677777777777777766665555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-05 Score=59.48 Aligned_cols=188 Identities=11% Similarity=0.011 Sum_probs=126.8
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
....++..|+.+-++.++..+. +...+-.=...+...++.+.|.-.|+...... +-+...|.-|+.+|...|.+.+|
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r--~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPR--NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcc--cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHH
Confidence 3455667777777776665443 55555555566667777777777777766542 23556777777777777777777
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHH-HH-HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII-DG-LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
...-....+. .+.+..+.+.+. .. +.....-++|.++++.-....+. -....+.+...|...
T Consensus 388 ~~~An~~~~~---------------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 388 NALANWTIRL---------------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHHHHHHH---------------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhh
Confidence 6655554432 122333333321 11 11222346777777766654321 344567778888999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
|..+.+..++++.... .||....+.+.+.+...+.+++|...|......
T Consensus 452 g~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999998876 689999999999999999999999999988875
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-05 Score=59.07 Aligned_cols=175 Identities=11% Similarity=0.040 Sum_probs=109.9
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhh-HHHHHHHHHh
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-HSILINCFCK 83 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 83 (256)
..|+.++..|++.+|+..|....+.+|. +-.++-.-...|...|+...|+.-+....+. +||-.. -..-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 3466677889999999999998875543 4445555566777888888888888887775 566432 2223345678
Q ss_pred cCCcchHHHHHHHHHhcCCCCc--hhhHHh--------------------------------hhhhcCCCHHHHHHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPD--VVTFTS--------------------------------LIKVCKPDAITYNTIIDG 129 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~--------------------------------ll~~~~~~~~~~~~l~~~ 129 (256)
.|.++.|..-|+.+++..-... ...... ++...+-|...+..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 8888888888888887532111 111111 111334455666666777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
|...|++..|+.=+....+..-. +..++--+-..+...|+.+.++..+++..+.
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 88888888887766666554322 4444444555555666666666666666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-05 Score=64.01 Aligned_cols=229 Identities=17% Similarity=0.157 Sum_probs=141.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+.+.+..+++..|+.-..++.+..|..+-+.++..+ ...+.|+.++|..+++.....+.. |..|...+-.+|.+.++
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 345677889999999999999977663333333333 235789999999999988777644 88899999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
.++|..+|++..+. -|+......+..+|.+.+.+.+-.++--++-+. .+-+...+=.+++...
T Consensus 93 ~d~~~~~Ye~~~~~----------------~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 93 LDEAVHLYERANQK----------------YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLIL 155 (932)
T ss_pred hhHHHHHHHHHHhh----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHH
Confidence 99999999999885 244555566677888887776555554444432 1112222222222221
Q ss_pred c----cCC------HHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCCHHhHHHHHHH
Q 047518 167 Y----AND------WNEAKRLFIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 167 ~----~~~------~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~ 234 (256)
+ ... ..-|...++.+.+.+ .--+..-....+..+...|++++|..++ ....+.-..-+...-+.-+..
T Consensus 156 qs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dl 235 (932)
T KOG2053|consen 156 QSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDL 235 (932)
T ss_pred HhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 1 111 223555555555443 1122222333344556778888888888 344333222233333445556
Q ss_pred HHhcCChhHHHHHHHHHHhcC
Q 047518 235 FCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 235 ~~~~g~~~~a~~~~~~m~~~g 255 (256)
+...++|.+-.++..++..+|
T Consensus 236 lk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 236 LKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcChHHHHHHHHHHHHhC
Confidence 666777777777666666554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=46.44 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=27.3
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 70 (256)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.2e-05 Score=55.52 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 74 HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 74 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
...-...|...+++++|++....... ......=+..+.+..+.+.|.+.++.|.+..
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~--------------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--- 167 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGEN--------------------LEAAALNVQILLKMHRFDLAEKELKKMQQID--- 167 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccch--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence 33344567788888888887765211 1122222456778888999999999998863
Q ss_pred chHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 154 NVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 154 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
+..|.+.|..++.+ .+....|.-+|+++-+. ..|+..+.+..+.++...|++++|..+++...... .-++.+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHH
Confidence 66677777777643 35688999999999875 47888999999999999999999999999998764 44677777
Q ss_pred HHHHHHHhcCChhHHH-HHHHHHH
Q 047518 230 TLLDGFCLTGRVNHAK-ELFVSME 252 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~-~~~~~m~ 252 (256)
.++-+-...|...++. +.+.+++
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Confidence 7777766777765543 3444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=45.96 Aligned_cols=33 Identities=55% Similarity=1.009 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777765
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-07 Score=45.64 Aligned_cols=32 Identities=44% Similarity=0.663 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
+|+.++.+|.+.|+++.|..+|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 56666666666666666666666666666655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00019 Score=56.02 Aligned_cols=123 Identities=18% Similarity=0.074 Sum_probs=101.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhc
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKN 203 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 203 (256)
.....+...|++++|+..++.+....+ -|..........+...++..+|.+.++++... .|+ ......+..++.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 344566788999999999999887633 36666677778899999999999999999987 455 66778889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
|++.+|.++++..... .+-++..|..|.++|...|+..++.....+.
T Consensus 388 g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 388 GKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred CChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 9999999999998876 4678899999999999988877776655443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-05 Score=61.75 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=98.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (256)
....++..+...++++.|+.+++++.+.. | .....++..+...++-.+|.+++++......
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p----------------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p- 231 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--P----------------EVAVLLARVYLLMNEEVEAIRLLNEALKENP- 231 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--C----------------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-
Confidence 34455666677889999999999998852 2 2344577888888888999999998886643
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
-+..........+...++++.|+.+.+++.+.. +-+-.+|..|..+|...|+++.|+..++.+.
T Consensus 232 ~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 232 QDSELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 366677777778889999999999999999872 3345599999999999999999998888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-05 Score=58.95 Aligned_cols=196 Identities=13% Similarity=0.151 Sum_probs=137.2
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
-+...+..+.+..++++|++++..-.+.. +.+......+..+|....++..|...|+++... .|...-|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl------ 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL------ 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH------
Confidence 36677777888899999999999887774 237778889999999999999999999998874 333222211
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH--HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR--GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
| -...+.+.+.+..|+++...|.+. |+...-..-+. .....+++..+..++++....| +..+.+.
T Consensus 83 -----Y--~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in 149 (459)
T KOG4340|consen 83 -----Y--QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQIN 149 (459)
T ss_pred -----H--HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhcc
Confidence 1 245667788899999999888764 22222111222 2245677777877777665332 4445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
......+.|+++.|.+-|+...+-+---....|+..+..| +.|+.+.|+++..+++++|+
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 5555678899999999998887654333445676665544 56889999999999998885
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-07 Score=45.57 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP 69 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 69 (256)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888777766
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-05 Score=64.03 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=148.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCC
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 119 (256)
..+...+...|-...|..+|+++. .|..++.+|...|+..+|..+..+..+. +|++..|..+. .+..|
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG-Dv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG-DVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh-hhccC
Confidence 467778888899999999998764 4677888999999999999999888873 45555444432 22233
Q ss_pred HHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 120 AITYNTI---------------IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 120 ~~~~~~l---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...|... .....+.++++++.+.|+.-..... ....+|-..-.+..+.+++..|.+.|......
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 3322221 1112335677777777776555432 25566766777778889999999999998876
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
. +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+.
T Consensus 549 ~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 549 E-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred C-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 3 2346789999999999999999999999999877 445667777777888999999999999988753
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-07 Score=44.40 Aligned_cols=30 Identities=40% Similarity=0.795 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
+|+.++++|++.|++++|.+++++|.+.||
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888888775
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.9e-06 Score=64.93 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
.+......+++.+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 44555666777888888899999999988765 2222334557999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
+++.+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998877777777776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-05 Score=51.87 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..|..++..+ ..++...+...++.+.+.. |+. .| .....-.+...+...|++++|...|+.+.....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s-~y---------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSS-PY---------AALAALQLAKAAYEQGDYDEAKAALEKALANAP 79 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCC-hH---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 3455555555 4788888888888888752 111 00 122344566889999999999999999998763
Q ss_pred CCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 152 KPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 152 ~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
.|+ ......+...+...|++++|+..++..... ......+.....++.+.|++++|...|+..
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333 234455778889999999999999775443 344567778899999999999999999864
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.8e-05 Score=63.25 Aligned_cols=207 Identities=12% Similarity=0.080 Sum_probs=136.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC-CC-----------------C
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GL-----------------F 68 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-----------------~ 68 (256)
+..+...+++++|.++.+...+..|. ....|-.+...+.+.++..++..+ .+... .- .
T Consensus 38 i~~~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~ 113 (906)
T PRK14720 38 IDAYKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYG 113 (906)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhh
Confidence 34556889999999999988876665 444455555567777776666555 22211 10 1
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
-+...+..+..+|-+.|+.+++..+|+++++.. +.|+.+.|.+.-.|... ++++|..++.+...
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---------------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---------------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 122566778888889999999999999999863 34677888888899988 99999999988765
Q ss_pred CCCCCchHHHHHHHHH-----HhccCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047518 149 KNVKPNVVTYTSVIRG-----FCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (256)
.-+ +..-|+.+... .....+.+.-..+.+.+... |..--..++..+-..|....+|+++..+++.+.+.. +
T Consensus 178 ~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~ 254 (906)
T PRK14720 178 RFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-N 254 (906)
T ss_pred HHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-C
Confidence 411 11111111110 11223344444444444433 333345566667788888999999999999999864 4
Q ss_pred CCHHhHHHHHHHHH
Q 047518 223 PDAFTYNTLLDGFC 236 (256)
Q Consensus 223 ~~~~~~~~l~~~~~ 236 (256)
-|.....-++.+|.
T Consensus 255 ~n~~a~~~l~~~y~ 268 (906)
T PRK14720 255 KNNKAREELIRFYK 268 (906)
T ss_pred cchhhHHHHHHHHH
Confidence 46667777888776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.3e-07 Score=65.47 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=88.8
Q ss_pred CccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 047518 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80 (256)
Q Consensus 1 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (256)
|+|+-.|+...+.++|++|+..|.+.+...|. |++.|..-..+|.+.|.++.|++-.+..+... +-...+|..|..+
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A 158 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 45677788899999999999999999998775 88889999999999999999999999988763 2234699999999
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCchhhH
Q 047518 81 FCKMGRVSHGFVVLGRILRSCFTPDVVTF 109 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 109 (256)
|...|++++|++.|++.++. .|+..+|
T Consensus 159 ~~~~gk~~~A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHccCcHHHHHHHHHhhhcc--CCCcHHH
Confidence 99999999999999998873 5554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00021 Score=51.12 Aligned_cols=187 Identities=12% Similarity=0.122 Sum_probs=112.5
Q ss_pred cCChHHHHHHHHHHhhC---C-CCCCHh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHH
Q 047518 49 NKHYDTVLSLFKRLNST---G-LFPDLY-THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 123 (256)
..+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++..+- |. +..+-
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~-------------S~RV~ 89 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PG-------------SKRVG 89 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CC-------------ChhHH
Confidence 34556666666665332 2 344443 45555556666777777777777776641 11 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
-.-...+-..|++++|.++|+.+.+.++ .|..++-.-+...-..|+.-+|++-+.+..+. +..|...|..+...|...
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhH
Confidence 1112234556777788888887777653 35556665555666667777777777777665 456777788888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHh
Q 047518 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKELFVSMES 253 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~ 253 (256)
|++++|.-.++++.=.. |.++..+..+...+.-.| +.+-|.+++.+..+
T Consensus 168 ~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred hHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888887777776542 345555566666543333 34456666655544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.6e-05 Score=58.69 Aligned_cols=209 Identities=11% Similarity=0.097 Sum_probs=152.0
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHH-------HH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI-------LI 78 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~ 78 (256)
.|+...+..+++.|++.+....... . +..-++....+|...|.+.+....-+...+.|-. ...-|+. +.
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~-~--~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA-T--DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh-h--hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 3555667788999999999998866 4 6667888889999999999888888887776632 2233333 33
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh----------hcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------VCKPDA-ITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~----------~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
.+|.+.++++.++.+|.+.+..-..|+...-..... ...|.. .-...-...+.+.|++..|+..|.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 456667888999999999877655555443333222 112222 112223667889999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
...+ -|...|+...-+|.+.|.+..|+.-.+...+.. ++....|.-=..++....++++|.+.|.+.++.+
T Consensus 386 kr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 386 KRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8874 488999999999999999999999888888763 3344555555666667778999999999888763
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.3e-06 Score=50.34 Aligned_cols=77 Identities=16% Similarity=0.357 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYAN--------DWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
..|.-+...+++.....+|+.++..|+ .|+..+|+.++.+..+.. +....+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 777777777777655432 23345555666666666666666666
Q ss_pred HHHHHH
Q 047518 196 IMDELC 201 (256)
Q Consensus 196 ll~~~~ 201 (256)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-07 Score=55.25 Aligned_cols=82 Identities=16% Similarity=0.376 Sum_probs=63.7
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.|+++.|+.+|+++....+..++...+..+..++.+.|++++|..+++. .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 6899999999999999877423455666689999999999999999988 33321 233555566899999999999999
Q ss_pred HHHH
Q 047518 93 VLGR 96 (256)
Q Consensus 93 ~~~~ 96 (256)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9876
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-05 Score=49.74 Aligned_cols=79 Identities=19% Similarity=0.386 Sum_probs=67.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 159 TSVIRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTFNVIMDELCKNG--------KMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.++++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455556667999999999999999999 899999999999987654 3456788999999999999999999
Q ss_pred HHHHHHHh
Q 047518 230 TLLDGFCL 237 (256)
Q Consensus 230 ~l~~~~~~ 237 (256)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99998765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00015 Score=63.76 Aligned_cols=232 Identities=10% Similarity=0.047 Sum_probs=129.8
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCChHHHHHHHHHHhhCCC---CCC--HhhHHHHHHH
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPV----SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL---FPD--LYTHSILINC 80 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~ 80 (256)
+...|++++|...+++.....+. .+. ...+.+...+...|+++.|...+++.....- .+. ..++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 45688999999999998764332 221 2345666777889999999999988754311 111 2345566777
Q ss_pred HHhcCCcchHHHHHHHHHhcCC---CCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 047518 81 FCKMGRVSHGFVVLGRILRSCF---TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVKP 153 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 153 (256)
+...|+++.|...+++.....- .++. ......+..+...+...|++++|...+.+.... +...
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQL----------PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccc----------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 8899999999999988765310 0000 001223344555666778888888877766432 1111
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCcHH--HH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--VQPNVV--TF--NVIMDELCKNGKMDEASSLLDLMIQHGVRPD--- 224 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 224 (256)
....+..+...+...|+.++|...++...... ...... .. ...+..+...|+.+.|...+...........
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23334445556677788888887777764321 010000 00 0111233445666666666554432111100
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 225 AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 225 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
...+..+..++...|++++|...+++..
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0112334445556666666666665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00018 Score=63.27 Aligned_cols=234 Identities=12% Similarity=0.060 Sum_probs=151.4
Q ss_pred CCCcCChhhHHHHHHHHHHhCCC----CCCcccHHHHHHHHHccCChHHHHHHHHHHhhC----CCC--C-CHhhHHHHH
Q 047518 10 DITTITPNEALCIFDYMLRMHPS----PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLF--P-DLYTHSILI 78 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~ 78 (256)
+...|++++|...+++....... .....++..+...+...|+++.|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 45689999999999987654221 011234456677888999999999998876442 221 1 223445566
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVKPN 154 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 154 (256)
..+...|++++|...+++.......... ......+..+...+...|++++|...+...... +....
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQP----------QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCc----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 6777889999999999887663211000 011234555677888999999999999887542 11101
Q ss_pred hHHH--HHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-
Q 047518 155 VVTY--TSVIRGFCYANDWNEAKRLFIEMMDQGVQPN---VVTFNVIMDELCKNGKMDEASSLLDLMIQH----GVRPD- 224 (256)
Q Consensus 155 ~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~- 224 (256)
.... ...+..+...|+.+.|..++........... ...+..+..++...|++++|...+++.... |..++
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1010 1122444567899999998877654211111 112456777888999999999999987642 32222
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 225 AFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 225 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+...+..++.+.|+.++|...+.+..+
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566677788999999999999988765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00015 Score=54.52 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=34.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL 62 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 62 (256)
+..+...|++++|+..|..+..... ++...+..+.-++.-.|.+.+|..+-...
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 3345667788888888777765332 45666666666666667777776655543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=62.36 Aligned_cols=150 Identities=10% Similarity=0.119 Sum_probs=93.7
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh--
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-- 114 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-- 114 (256)
..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.|++-.+++....+..-.|...+-..+--
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 45777777777777777776665332 3677899999999999999999999988888777776553221110
Q ss_pred ----------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 115 ----------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 115 ----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...|+......+.+-|...+.++.|.-+|. +...|..+...+...|++..|...-++.
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 123455555555555666666666555554 3334566666777777777766554433
Q ss_pred CCCCcHHHHHHHHHHHHhcCChh
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
.+..+|..+-.+|...+.+.
T Consensus 1247 ---ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred ---cchhHHHHHHHHHhchhhhh
Confidence 23445555555555544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.5e-05 Score=48.75 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CcHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--PNVVTFNVIM 197 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 197 (256)
++..++..+.+.|++++|...|..+...... .....+..+..++...|+++.|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556777888999999999999998875321 12346667888899999999999999998875322 1245677888
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047518 198 DELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.++...|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 8889999999999999999876
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-05 Score=57.71 Aligned_cols=130 Identities=11% Similarity=0.177 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG-FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
.+|..++...-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688889999999999999999999986532 245555555544 33467788899999999977 46678889999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDA---FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999875 33333 4889999888899999999999988765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.9e-05 Score=48.31 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
+..+...+...|++++|...+....+.... +...+..+...+...+++++|...++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 334445555555555555555555544221 22344445555555555555555555555442 2222344445555555
Q ss_pred cCChhHHHHHHHHHH
Q 047518 203 NGKMDEASSLLDLMI 217 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~ 217 (256)
.|++++|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555555555555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-06 Score=57.82 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=82.2
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
..+..+...|++++|..+|+.+....|. +..-|-.|..++...|++++|+..|....... +.|+..+-.+..++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 3455667899999999999999998776 78889999999999999999999999998886 35778888899999999
Q ss_pred CCcchHHHHHHHHHhc
Q 047518 85 GRVSHGFVVLGRILRS 100 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~ 100 (256)
|+.+.|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988774
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.9e-06 Score=65.00 Aligned_cols=95 Identities=6% Similarity=-0.051 Sum_probs=83.5
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|...|......|++++|++.|++.++..+. +...|..+..++.+.|++++|+..++++.+.. +.+...|..+..+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 344567778899999999999999998875 77789999999999999999999999998874 336678889999999
Q ss_pred hcCCcchHHHHHHHHHhc
Q 047518 83 KMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~ 100 (256)
..|++++|+..|++.++.
T Consensus 82 ~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 82 KLEEYQTAKAALEKGASL 99 (356)
T ss_pred HhCCHHHHHHHHHHHHHh
Confidence 999999999999999885
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.2e-05 Score=52.54 Aligned_cols=106 Identities=10% Similarity=0.024 Sum_probs=75.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 22 IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
++..+....+.+.....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 21 LILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334433333334455678888899999999999999999986543322 46788899999999999999999999887
Q ss_pred cCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047518 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142 (256)
Q Consensus 100 ~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (256)
. . +.+...+..+..++...|+...+..-
T Consensus 101 ~--~-------------p~~~~~~~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 101 L--N-------------PKQPSALNNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred h--C-------------cccHHHHHHHHHHHHHcCChHhHhhC
Confidence 4 1 23455566677778777775554433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.001 Score=53.98 Aligned_cols=240 Identities=11% Similarity=0.106 Sum_probs=155.5
Q ss_pred CCcCChhhHHHHHHHHHHh-CCCC---CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHh
Q 047518 11 ITTITPNEALCIFDYMLRM-HPSP---PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTHSILINCFCK 83 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 83 (256)
+..|++.+-...|.+..+. +|.. .....|..+...|-..|+.+.|..+|++..+...+-- ..+|......-.+
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 4567788888888887764 2321 1123578888999999999999999999987654422 3466666666667
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhh---hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLI---KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (256)
..+++.|.++.+......-.|...-|.... ..+..+...|...++.--..|-++....+|+++.+..+. ++.....
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~N 516 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIIN 516 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 788888888887765432111101110000 011235667888888888889999999999999887665 3333233
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHhHHHH--HHH
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNV-VTFNVIMDELCK---NGKMDEASSLLDLMIQHGVRPDAFTYNTL--LDG 234 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~ 234 (256)
....+.....++++.+++++-+..-..|+. ..|+..+.-+.+ ....+.|..+|++.++ |.+|...-+--| ...
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 333345566788888888877665434553 467766665543 2368899999999998 566654422222 222
Q ss_pred HHhcCChhHHHHHHHHHH
Q 047518 235 FCLTGRVNHAKELFVSME 252 (256)
Q Consensus 235 ~~~~g~~~~a~~~~~~m~ 252 (256)
=.+.|....|+.++++..
T Consensus 596 EEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 234577778888887754
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-05 Score=54.44 Aligned_cols=96 Identities=10% Similarity=-0.012 Sum_probs=73.9
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC--CHhhHHHHHHHHH
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP--DLYTHSILINCFC 82 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 82 (256)
+....+.-...+..+...+..+.+..........|..+...+...|++++|+..|+........+ ...++..+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~ 83 (168)
T CHL00033 4 SQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT 83 (168)
T ss_pred ccccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 44556666667888888887775544432345667888889999999999999999997653222 2357888999999
Q ss_pred hcCCcchHHHHHHHHHhc
Q 047518 83 KMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~ 100 (256)
..|++++|+..+++..+.
T Consensus 84 ~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 84 SNGEHTKALEYYFQALER 101 (168)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998874
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.29 E-value=5e-05 Score=48.94 Aligned_cols=99 Identities=12% Similarity=0.042 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV--RPDAFTYNTL 231 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l 231 (256)
.++-.+...+...|++++|...++.+...... .....+..+..++.+.|++++|...|+.+..... +.....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566777888999999999999999876321 1135667789999999999999999999986421 1225668888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc
Q 047518 232 LDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 232 ~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..++.+.|+.++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 88999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-06 Score=51.43 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 168 ANDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ +.+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45667777777777665321 2344455566777777777777777766 2211 1122344445666777777777777
Q ss_pred HHHH
Q 047518 247 LFVS 250 (256)
Q Consensus 247 ~~~~ 250 (256)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-05 Score=46.79 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=79.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 158 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
+..+...+...|++++|...++...+.. +.+...+..+..++...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556777888999999999999998764 3345778888999999999999999999988764 4455688888999999
Q ss_pred cCChhHHHHHHHHHHhc
Q 047518 238 TGRVNHAKELFVSMESM 254 (256)
Q Consensus 238 ~g~~~~a~~~~~~m~~~ 254 (256)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999887654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.1e-05 Score=60.58 Aligned_cols=125 Identities=16% Similarity=0.089 Sum_probs=87.2
Q ss_pred CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 67 LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
.+.+......+++.+....+.+.+..++.+..... ... ..-..+..++++.|.+.|..+.++.++..=
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~---~~~---------~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSP---NCS---------YLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCc---ccc---------cccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 34455666777777777777777777777766541 111 011223457788888888888888888888
Q ss_pred HhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
...|+-||..+++.+++.+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888888888888887666555666665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00039 Score=50.95 Aligned_cols=58 Identities=7% Similarity=0.078 Sum_probs=35.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQH--GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++.+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455566677777777777766653 122233455566677777777777776665544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00014 Score=60.44 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=125.3
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
+..|.+++|+.+|.+-.+ |..|=..|...|.|++|.++-+.=.+-.+ ..||.....-+-..++.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 456778888888887755 44555667778889998888766444332 35677777777778889999
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhh---------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIK---------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
+++|++.... .-.++..+.. .-..|...|..-....-..|+.+.|+.+|...++ |-.+
T Consensus 878 leyyEK~~~h----afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 878 LEYYEKAGVH----AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHhcCCh----HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 9888764322 1111111111 1245677777778888889999999999987664 4567
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
++..|-+|+.++|.++-++- -|......+.+.|...|++.+|..+|.+...
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 77778889999998876653 2566777888999999999999988877653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00014 Score=60.43 Aligned_cols=211 Identities=15% Similarity=0.119 Sum_probs=134.7
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC-C--------CCCCHhhHHHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-G--------LFPDLYTHSILI 78 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~ 78 (256)
+-|+..|+.+.|.+-.+.+. +...|..|.++|.+.++.+-|.-.+-.|... | -.|+ .+=....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvA 807 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVA 807 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHH
Confidence 45788999999988887773 4467999999999999988877666555321 1 1122 2222233
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (256)
-.....|.+++|..+|++..+ |..|=..|...|.|++|.++-+.-....+ ..||
T Consensus 808 vLAieLgMlEeA~~lYr~ckR-----------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKR-----------------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHH-----------------------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 344677899999999988776 33444567777888888777654333222 2344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH----------HcC---------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 159 TSVIRGFCYANDWNEAKRLFIEMM----------DQG---------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
......+...++.+.|++.|++.. ... -.-|...|.-....+...|+.+.|+.+|....+.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 445555555566766666665421 110 1224455666666666777877777777766541
Q ss_pred ----------C----------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 220 ----------G----------VRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 220 ----------~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
| -.-|...-..+.+.|...|++.+|..+|-+..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1 01244455567888999999999998887654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-06 Score=40.94 Aligned_cols=29 Identities=17% Similarity=0.525 Sum_probs=22.8
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 66 (256)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67788888888888888888888887765
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00012 Score=54.93 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT-SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV-TFNVIMDEL 200 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~ 200 (256)
--.+..+++..|.+.+|+++|-.+....++ |..+|. .+.++|.+.+.++.|+.++-.+-. ..+.. ....+..-|
T Consensus 396 n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~C 471 (557)
T KOG3785|consen 396 NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDC 471 (557)
T ss_pred hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHH
Confidence 345788999999999999999888766665 555554 555788899999988776544422 22333 334455678
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
-+.+.+--|.+.|+.+... .|++..|
T Consensus 472 Yk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 472 YKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 8889988899999888765 4555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00048 Score=51.83 Aligned_cols=197 Identities=13% Similarity=0.148 Sum_probs=102.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhh----CCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNS----TGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
|......|...|++++|.+.|.+... .+-+.+ ...|.....+|.+. ++++|+..+++..+.-...+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-------- 108 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-------- 108 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--------
Confidence 45555666677777777777776522 121111 22445555554443 77777777777655200000
Q ss_pred hhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 114 KVCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDK----NVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.+..-...+..+...|... |++++|...|.+..+. +.+ .-...+..+...+.+.|++++|..+|++.......
T Consensus 109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 0011123455666677777 7888888888776432 211 11344566667777888888888888877754221
Q ss_pred -----CcHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh------HHHHHHHHHhcCChhHHHHHH
Q 047518 188 -----PNVV-TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT------YNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 188 -----~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~a~~~~ 248 (256)
++.. .+...+-++...||+-.|.+.+++.... .|+... ...|+.+| ..||.+...+.+
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~--~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av 257 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ--DPSFASSREYKFLEDLLEAY-EEGDVEAFTEAV 257 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT--STTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHC
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 1221 2233344566677888888888777653 454432 23344443 345555444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.4e-06 Score=48.53 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=51.7
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 78 (256)
+..|++++|++.|+++....|. +...+..+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4578999999999999998775 7778889999999999999999999999887 45645544443
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00027 Score=48.94 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677888889999999999999999887543332 4678888899999999999999999999863 2346667777
Q ss_pred HHHHHhcCC
Q 047518 197 MDELCKNGK 205 (256)
Q Consensus 197 l~~~~~~g~ 205 (256)
..++...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 778877776
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00028 Score=56.37 Aligned_cols=181 Identities=10% Similarity=0.013 Sum_probs=113.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHH
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 121 (256)
=++.+...+++++|.+...++...+ +.+...+..-+-+..+.+.+++|+.+.+.-... . .+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~--------------~~~~ 80 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--L--------------VINS 80 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--h--------------hcch
Confidence 3456677889999999999999876 556677777777899999999998655432210 0 0000
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV--TFNVIMDE 199 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~ 199 (256)
.+.--.-+..+.+..++|+..++..... +..+...-.+.+.+.|++++|+.+|+.+.+.+.. +.. .-..++.+
T Consensus 81 ~~fEKAYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 81 FFFEKAYCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAV 155 (652)
T ss_pred hhHHHHHHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 1111123456789999999999833322 3446666778889999999999999999887532 321 11111111
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRP--DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+-...+. +.+.. ...| +...+......+...|++.+|+++++...
T Consensus 156 ----~a~l~~~-~~q~v---~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 156 ----AAALQVQ-LLQSV---PEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred ----HHhhhHH-HHHhc---cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1111111 22222 1223 22233333456678899999999998874
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00016 Score=56.22 Aligned_cols=91 Identities=11% Similarity=0.004 Sum_probs=79.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
...+...|++++|+..|.+....... +...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 45677889999999999999987654 67788888999999999999999999999874 34677888899999999999
Q ss_pred hHHHHHHHHHHHC
Q 047518 207 DEASSLLDLMIQH 219 (256)
Q Consensus 207 ~~a~~~~~~~~~~ 219 (256)
++|...|+...+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00034 Score=59.56 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=108.6
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
.+..+-+++|..+|++.. .+..+.+.|+. .-++.++|.+.-++.. .+..|..+..+-.+.|...+
T Consensus 1058 ai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHH
Confidence 345556666666666541 24444555554 2345566655554432 34577888888778887777
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 169 (256)
|++-|-+ ..|+..|.-+++...+.|.|++-.+.+.-.++...+|... +.+|-+|++.+
T Consensus 1123 AieSyik--------------------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1123 AIESYIK--------------------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHh--------------------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhc
Confidence 7765522 2467788899999999999999999998888877777766 56888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (256)
+..+.++++ ..||......+.+-|...|.++.|.-+|.
T Consensus 1181 rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1181 RLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred hHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 988776654 24566666666666666666665555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00056 Score=43.93 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDEL 200 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~ 200 (256)
.+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..++++....... .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345678889999999999999999887644 345667778899999999999999999876311 1223334445577
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
...|+.++|...+-..... +..-|..-|..|..
T Consensus 86 ~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE----TLPRYRRAIRFYAD 118 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 8899999999998776643 34467666666653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0022 Score=53.04 Aligned_cols=182 Identities=10% Similarity=0.086 Sum_probs=97.0
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.+...|..+.-+....|+++.+-+.|++....-+ -....|+.+...|...|.-..|..+++......-.|+..+.-.+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 4677788888888888888888888888765432 245667777777777787777777777665542222211110000
Q ss_pred h---------------------------hcCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCch
Q 047518 114 K---------------------------VCKPDAITYNTIIDGLCKQ-----------GFVDKAKELFLKMKDKNVKPNV 155 (256)
Q Consensus 114 ~---------------------------~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 155 (256)
. .-...+..|..+.-+|... ....++++.+++..+.+.. |.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 0 0001112222222222211 1123444555555444332 22
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.+.--+.--|+..++.+.|.+..++..+.+...+...|..+...+...+++..|+.+.+...
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 22222223344556666666666666665445556666666666666666666666665544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00043 Score=58.72 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=109.9
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 93 (256)
.+...|+..|-+..+..+. =...|..|...|+...+..+|.+.|+...+.. .-+..........|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 3466777777777665554 45578888888888888888999998887764 23566778888888888888888887
Q ss_pred HHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHH
Q 047518 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173 (256)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 173 (256)
.-..-+. .|- . .-...|....-.|.+.++...|..-|+......++ |...|..+..+|...|++..
T Consensus 549 ~l~~~qk--a~a-~----------~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~ 614 (1238)
T KOG1127|consen 549 CLRAAQK--APA-F----------ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSH 614 (1238)
T ss_pred HHHHhhh--chH-H----------HHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceeh
Confidence 3332221 000 0 00111222333455566666666666666555443 55666666666666666666
Q ss_pred HHHHHHHHHHcCCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 174 AKRLFIEMMDQGVQPNV-VTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
|.++|.+.... .|+. ..--.....-+..|++.+|...+....
T Consensus 615 AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 615 ALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666665553 3321 111112223345566666666665544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00035 Score=52.38 Aligned_cols=208 Identities=11% Similarity=0.074 Sum_probs=145.1
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
+....+...|+...|+.....+++..| .|+..+..-..+|...|.+..|+.-+....+.. ..+..++..+-..+...
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhh
Confidence 344556778999999999999988666 488889999999999999999998888776654 33566677778888889
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch---HHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV---VTYTSV 161 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 161 (256)
|+.+.++...++.++. .|+.-..-.....++.-+.... -+......++|.+++...+...+..+.... ..+..+
T Consensus 237 gd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le-s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE-SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred hhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence 9999999988888874 4543221111110000000000 123455678888888888888776543222 234455
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
-.++...+++.+|++...+..+.. +.|..++..-..+|.-...++.|+.=|+...+.
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 566777888999999999988763 234777777778888788888888888777654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00026 Score=48.87 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 197 (256)
...|..+...+...|++++|...|.........+ ...++..+...+...|++++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456777788888999999999999987654332 23578888899999999999999999998763 33345566666
Q ss_pred HHHH-------hcCChhHHHHHHHHH
Q 047518 198 DELC-------KNGKMDEASSLLDLM 216 (256)
Q Consensus 198 ~~~~-------~~g~~~~a~~~~~~~ 216 (256)
..+. ..|+++.|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 778877665555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00029 Score=47.05 Aligned_cols=99 Identities=10% Similarity=-0.065 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+....-.+..-+...|++++|.++|+.+....+. +..-|-.|--++-..|++.+|+..|....... +-|...+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3344455566677788888888888888776544 56667777778888888888888888888775 346777778888
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 047518 199 ELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~ 219 (256)
++...|+.+.|.+.|+..+..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888877653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00033 Score=52.60 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK-MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
.+|..++....+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+..++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------------- 65 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------
Confidence 357888888888888999999999988553 2244555554444333 46666689999888874
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV---VTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
++.+...|...++.+.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 66 f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 66 FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567778888888888999999999999988765 33222 47888888778888999888888888765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00018 Score=50.47 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=63.5
Q ss_pred CCcccHHHHHHHHHcc-----CChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhh
Q 047518 34 PPVSSFNIMLGCLAKN-----KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 108 (256)
.+-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+. -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 4555666666666533 4455555556666666666666666666665543 2221 1111111111
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC
Q 047518 109 FTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170 (256)
Q Consensus 109 ~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 170 (256)
-.-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 114 ----------------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ----------------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1123456789999999999999999999999999955543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00019 Score=50.30 Aligned_cols=87 Identities=20% Similarity=0.288 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC----------------CHHHHH
Q 047518 117 KPDAITYNTIIDGLCK-----QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN----------------DWNEAK 175 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~ 175 (256)
..+..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4677788888887765 4677777777888888888888888888888764321 123344
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 176 RLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
+++++|...|+-||..++..++..+++.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 4444444444444444444444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00014 Score=59.89 Aligned_cols=52 Identities=6% Similarity=0.113 Sum_probs=25.2
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHH
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 95 (256)
-+.+....+.|.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|.
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHH
Confidence 3444445555555555555554432 122234445555555555555555553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0026 Score=46.71 Aligned_cols=63 Identities=11% Similarity=-0.054 Sum_probs=35.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
....+...|++++|+..|+++... .|.... -....-.++.+|.+.+++++|...+++..+..+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~----------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPY----------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChH----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 444455667777777777777664 111100 001123455667777777777777777766543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=52.27 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=85.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
+-..+.++|++|+..|.+..+..+. |.+-|..-..+|.+.|.++.|.+-.+..+... +-...+|..|..+|...|++.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4467889999999999999988654 78889999999999999999999888888764 224678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047518 208 EASSLLDLMIQHGVRPDAFTYNTLLDGF 235 (256)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (256)
+|++.|++.++ +.|+-.+|..=+...
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 99999998887 467777766555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00046 Score=51.92 Aligned_cols=209 Identities=10% Similarity=0.082 Sum_probs=111.8
Q ss_pred CCCcCChhhHHHHHHHHHHhCC----CCCCcccHHHHHHHHHccCChHHHHHHHHHHhh----CCCCCC--HhhHHHHHH
Q 047518 10 DITTITPNEALCIFDYMLRMHP----SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS----TGLFPD--LYTHSILIN 79 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~ 79 (256)
|...|++++|.+.|.+...... ...-...|.....+|.+. ++++|...+++... .| .|+ ...+..+..
T Consensus 45 fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 45 FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAE 122 (282)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Confidence 4445666666666665433211 101122344444444433 77777777776533 33 223 235666777
Q ss_pred HHHhc-CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----C
Q 047518 80 CFCKM-GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-----P 153 (256)
Q Consensus 80 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~ 153 (256)
.|-.. |+++.|++.|++..+.-...+.. ..-...+..+...+.+.|++++|..+|+++...... .
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~---------~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSP---------HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCCh---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 77777 78888888888876631100000 011235667888999999999999999998765332 2
Q ss_pred chH-HHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 154 NVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQG--VQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 154 ~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
+.. .|-..+-++...||+..|...+++..... +.. .......|+.++ +.|+.+.....+.+.... .+.|..--
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~-~~ld~w~~ 271 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSI-SRLDNWKT 271 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTS-S---HHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHccc-CccHHHHH
Confidence 222 23334446667899999999999988652 211 234455556654 455555554444444332 23444433
Q ss_pred HHH
Q 047518 229 NTL 231 (256)
Q Consensus 229 ~~l 231 (256)
..|
T Consensus 272 ~~l 274 (282)
T PF14938_consen 272 KML 274 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0055 Score=50.13 Aligned_cols=137 Identities=10% Similarity=0.055 Sum_probs=96.7
Q ss_pred hcCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC--------CHHHHHHHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCK--Q---GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN--------DWNEAKRLFIEM 181 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~ 181 (256)
..+.+...|...+.+... . +..+.|..+|++..+..+. ....|..+..++.... ++..+.+..+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 456788899988877544 2 2377999999999987543 3445554444332221 233444444443
Q ss_pred HHc-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 182 MDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 182 ~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
... ....+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 332 123355778777777778899999999999999864 68889999999999999999999999887643
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00041 Score=49.46 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=28.9
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHhhC
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPP-VSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 65 (256)
......|++.+|...|+.+....|.++- ..+.-.++.++.+.|+++.|...+++..+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344556666666666666555443111 123344555556666666666666665443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0029 Score=46.74 Aligned_cols=118 Identities=8% Similarity=0.025 Sum_probs=67.6
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CCcchHH
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM---GRVSHGF 91 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~ 91 (256)
.+++...-++.-.+.+|. |...|-.|...|...|++..|...|....+.. +++...+..+..++... ....++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 344444445555555554 66677777777777777777777777766553 23444554444444332 2233556
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
.+++++++. + +.++.+...|...+...|++.+|...|+.|.+..
T Consensus 214 ~ll~~al~~--D-------------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 214 ALLRQALAL--D-------------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHhc--C-------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666666653 1 2344455555666666677777777777666653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00046 Score=56.96 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=70.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
+.+-....+|.+|+.+++.+.+... -..-|..+.+.|+..|+++.|+++|.+. ..++..|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3455667788888888888877643 3345777888888889998888887543 2355667888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
.+|.++-.+... ...+...|..-..-+-++|++.+|.++
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 888877665532 223344444444444455555444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0032 Score=52.99 Aligned_cols=192 Identities=13% Similarity=0.140 Sum_probs=126.2
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
..+.|+.++|..+++.....++. |..+...+-.+|.+.++.++|..+|++.... -|+..-...+..+|.+.+.+.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 45789999999998888665554 8889999999999999999999999999876 5777777788889999887765
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCC-CCCchHHH
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ----------GFVDKAKELFLKMKDKN-VKPNVVTY 158 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~-~~~~~~~~ 158 (256)
-.++--++.+. ++.+...+ -.+++.+... --..-|.+.++.+.+.+ ..-+..-.
T Consensus 129 qQkaa~~LyK~-~pk~~yyf--------------WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 129 QQKAALQLYKN-FPKRAYYF--------------WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHh-CCcccchH--------------HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 44444344431 22222222 2222222221 01234566666666554 11122222
Q ss_pred HHHHHHHhccCCHHHHHHHHHH-HHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 159 TSVIRGFCYANDWNEAKRLFIE-MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
..-.......|.+++|++++.. ..+.-...+...-+.-+..+...++|.+..++-.++...|
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 2223344567889999999844 3343333455555667777888899999998888888775
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00059 Score=45.87 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
.++..+...|++++|..+...+....+ .+...|..+|.+|...|+...|.+.|+.+.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344445555555555555555555432 245555555555555555555555555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0026 Score=46.99 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=77.2
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCCCCcHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA---NDWNEAKRLFIEMMDQGVQPNVV 191 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~ 191 (256)
..+.|...|-.|..+|...|+.+.|...|....+... ++...+..+..++... ....++..+++++.... +-|..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ir 228 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIR 228 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHH
Confidence 4567788888888888888888888888888877633 3555666666555433 34677888888888765 34677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+...+...+...|++.+|...|+.|.+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 7777888888888888888888888876
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0079 Score=47.12 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 20 LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
+++-+++. .+| .|..+|-.|+.-+...+..+...+++++|... .+--..+|..-+.+-...+++...+.+|.+.+.
T Consensus 29 lrLRerIk-dNP--tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERIK-DNP--TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHhh-cCc--hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 34444443 233 47888899999888888888888888888754 222344566666555555666666666666555
Q ss_pred cC
Q 047518 100 SC 101 (256)
Q Consensus 100 ~~ 101 (256)
..
T Consensus 105 k~ 106 (660)
T COG5107 105 KS 106 (660)
T ss_pred hh
Confidence 43
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00018 Score=40.87 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
..+...|++++|...|+.+.+.... +...+..+..++...|++++|...++++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555555555422 4455555555555555555555555555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0026 Score=40.91 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++...
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555666666666666655554322 22444455555556666666666655554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00014 Score=41.28 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=28.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+...|++++|...++.+++.. +-+...+..+..++...|++++|...|+.+.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555543 22444555555555555555555555555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0053 Score=50.21 Aligned_cols=143 Identities=11% Similarity=0.029 Sum_probs=90.6
Q ss_pred CCCCHhhHHHHHHHHHhcC-----CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc--------
Q 047518 67 LFPDLYTHSILINCFCKMG-----RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ-------- 133 (256)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~-------- 133 (256)
.+.+...|...+++..... ....|..+|+++++. +|+ ....|..+..+|...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~-------------~a~a~A~la~~~~~~~~~~~~~~ 397 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPD-------------FTYAQAEKALADIVRHSQQPLDE 397 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCC-------------cHHHHHHHHHHHHHHHhcCCccH
Confidence 3456677877777754322 255778888888774 333 222333332222221
Q ss_pred CCHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 047518 134 GFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212 (256)
Q Consensus 134 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 212 (256)
.++..+.+........ ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|...
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1233444444443332 123345667777666667799999999999999874 6788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHhH
Q 047518 213 LDLMIQHGVRPDAFTY 228 (256)
Q Consensus 213 ~~~~~~~~~~~~~~~~ 228 (256)
+++.... .|...+|
T Consensus 476 ~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 476 YSTAFNL--RPGENTL 489 (517)
T ss_pred HHHHHhc--CCCCchH
Confidence 9888764 4444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0001 Score=42.22 Aligned_cols=51 Identities=24% Similarity=0.384 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.|++++|...++.+.... +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455555555555555442 224444445555555555555555555555543
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00025 Score=40.76 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAKRLFIEMMD 183 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 183 (256)
..+|..+...+...|++++|+..|.+..+.... +...|..+..++...| ++++|+..++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445666666666666666666666666665432 5556666666666666 56666666666554
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=41.39 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 047518 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG-RVNHAKELFVSMES 253 (256)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 253 (256)
...|..+...+...|++++|+..|++..+.+ +.+...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555556666666666666666655542 224445555556666666 46666666655544
|
... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00033 Score=59.39 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=111.9
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 87 (256)
-|..-.+..+|.+.|++..+.++. +..++......|++..+++.|..+.-..-+.. ...-..-|....-.|...++.
T Consensus 501 iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~ 578 (1238)
T KOG1127|consen 501 IYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccch
Confidence 344444677899999999887765 88899999999999999999999843332211 001112333355567778888
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH--HHH
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI--RGF 165 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~ 165 (256)
..++..|+...+. -+.|...|..++.+|..+|++..|.++|.+..... |+. +|...- -.-
T Consensus 579 h~aV~~fQsALR~---------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~e 640 (1238)
T KOG1127|consen 579 HGAVCEFQSALRT---------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVME 640 (1238)
T ss_pred hhHHHHHHHHhcC---------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHH
Confidence 8999988888774 24577889999999999999999999999887753 332 232222 223
Q ss_pred hccCCHHHHHHHHHHHHH
Q 047518 166 CYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~ 183 (256)
+..|.+.++...+.....
T Consensus 641 cd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 567899999998888764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0013 Score=48.76 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCcHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPNVVTFNVI 196 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 196 (256)
..|......+.+.|++++|...|+.+.+..+... ..++-.+...|...|++++|...|+.+.+... ......+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555566777777777777776532211 24555666777777777777777777775421 1123344445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 047518 197 MDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..++...|+.++|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666777777777777777664
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0013 Score=50.61 Aligned_cols=244 Identities=14% Similarity=0.058 Sum_probs=134.2
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCF 81 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (256)
+...+..+.+..++..|+..+.......|. ++..|..-+..+...+++++|.--.+.-.+.. |. ...+...-+++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCH 127 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhh
Confidence 345678889999999999999999998876 67778888888888888888887776654432 21 11333333344
Q ss_pred HhcCCcchHHHHHH---------------HHHhcCC-CCchhhHHhhhh------------------hcCCCH-HHHHHH
Q 047518 82 CKMGRVSHGFVVLG---------------RILRSCF-TPDVVTFTSLIK------------------VCKPDA-ITYNTI 126 (256)
Q Consensus 82 ~~~~~~~~a~~~~~---------------~~~~~~~-~~~~~~~~~ll~------------------~~~~~~-~~~~~l 126 (256)
...++..+|...++ .+..... .|...++..+-. ..+.|. ..+...
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~ 207 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY 207 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence 44444434433332 1111111 111111111100 000010 011111
Q ss_pred H--HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH-------------HHHHHhccCCHHHHHHHHHHHHHc---CCCC
Q 047518 127 I--DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS-------------VIRGFCYANDWNEAKRLFIEMMDQ---GVQP 188 (256)
Q Consensus 127 ~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------li~~~~~~~~~~~a~~~~~~~~~~---~~~~ 188 (256)
+ .++.-.++.+.|...|++....+ |+...-.. --.-..+.|++..|.+.+.+.+.. +..|
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 1 12222344455555555544432 22221111 112234668888888888887753 3456
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+...|........+.|+.++|+.--+...+.+ ..-...+..-..++...++|++|.+-+++..+
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777777788888888888777776542 11122333444556667888888888877654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0032 Score=42.25 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CC-CCc------------------hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 047518 130 LCKQGFVDKAKELFLKMKDK--NV-KPN------------------VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~--~~-~~~------------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 188 (256)
....++.+.+...+.++... |. -|+ ..+...++..+...|++++|..+.+.+.... +.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~ 94 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PY 94 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CC
Confidence 34567788888888777653 21 111 1223445556677888888888888888774 45
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHhH
Q 047518 189 NVVTFNVIMDELCKNGKMDEASSLLDLMI-----QHGVRPDAFTY 228 (256)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 228 (256)
|...|..++.+|...|+...|.+.|+.+. +.|+.|+..+-
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 77888888888888888888888888775 35788877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0024 Score=46.25 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=63.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCH
Q 047518 41 IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120 (256)
Q Consensus 41 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 120 (256)
.++.++.-.|.+.-...++.+.++...+.++.....+++.-.+.|+.+.|..+|++..+..-..+..+++ .
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~---------~ 252 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK---------I 252 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh---------H
Confidence 3444444455555555555555554434444555555555555666666666665554432211111111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
.+.......|.-.+++..|...|.++...+.. +....|.-.-+....|+...|.+.++.++..
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11222233444455555555555555544322 3333333333333445666666666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0032 Score=46.68 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHhH
Q 047518 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN----VVTFNVIMDELCKNGKMDEASSLLDLMIQHG--VRPDAFTY 228 (256)
Q Consensus 155 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~ 228 (256)
...|...+....+.|++++|...|+.+.+.. |+ ...+..+..+|...|++++|...|+.+.+.- .+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 4456666665566799999999999999873 33 3577788899999999999999999998641 12234566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 229 NTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+..++...|+.++|.++++++++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777888999999999999988764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.021 Score=45.77 Aligned_cols=176 Identities=10% Similarity=0.065 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHH
Q 047518 52 YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131 (256)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~ 131 (256)
.+.....++++...-...-..+|...|+.-.+..-++.|..+|.++.+.+..+ -++.+.++++..|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~-------------hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR-------------HHVFVAAALMEYYC 413 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc-------------chhhHHHHHHHHHh
Confidence 56667777777654333334578888988888889999999999999976554 24445677776665
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a 209 (256)
.++.+-|.++|+.-.+. ...+..-....++-+...++-..+..+|++....++.|+ ...|..++..=..-|+...+
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 57889999999975544 122344446677777888999999999999998866555 57899999999999999999
Q ss_pred HHHHHHHHHC---CCCCCHHhHHHHHHHHHhcCChh
Q 047518 210 SSLLDLMIQH---GVRPDAFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 210 ~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 242 (256)
.++-+++... ...+...+-..+++-|.-.+...
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 9888776542 01222233344555555444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=8.2e-05 Score=49.88 Aligned_cols=92 Identities=9% Similarity=-0.036 Sum_probs=76.3
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.+..+...|++++|..+|.-+.-.++. +..-|..|..++...++++.|+..|...-..+. -|+..+-....++...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 344567899999999999999887775 666788899999999999999999998766553 35555666888999999
Q ss_pred CcchHHHHHHHHHhc
Q 047518 86 RVSHGFVVLGRILRS 100 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~ 100 (256)
+.+.|...|......
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999988874
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0005 Score=39.96 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=43.5
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 66 (256)
.+.+.++++.|+++++.+...+|. +...|.....++.+.|+++.|...++...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456778888888888888887665 66677778888888888888888888887663
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.017 Score=42.80 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=92.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+......|++.+|..+|+......+. +...--.++.+|...|+.+.|..++..+...--.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 34567778888888888888776665 4556677888888888888888888877654211122222233444555555
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCchHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRG 164 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~ 164 (256)
..+...+-++.... +.|...-..+...+...|+.+.|...+-.+..+ |.. |...-..++..
T Consensus 219 ~~~~~~l~~~~aad----------------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~ 281 (304)
T COG3118 219 TPEIQDLQRRLAAD----------------PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLEL 281 (304)
T ss_pred CCCHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHH
Confidence 55555555444442 335556666777888888888888877776554 333 44555666666
Q ss_pred HhccCCHH
Q 047518 165 FCYANDWN 172 (256)
Q Consensus 165 ~~~~~~~~ 172 (256)
+.-.|..+
T Consensus 282 f~~~g~~D 289 (304)
T COG3118 282 FEAFGPAD 289 (304)
T ss_pred HHhcCCCC
Confidence 66555333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.017 Score=42.08 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=114.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhh--CCCC----CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNS--TGLF----PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 112 (256)
|+.+.+.+.-....++-+..++.-.. +.+. .-..+.+.++.++...+.+.-....+.++++..
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~----------- 207 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY----------- 207 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-----------
Confidence 66777666555444444444432211 0000 012344566677777888888888888888752
Q ss_pred hhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH-----HHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI-----RGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 113 l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.+.++.....|++.-.+.|+.+.|...|+...+..-+.+..+.+.++ ..|.-.+++..|...+.++.... .
T Consensus 208 ---~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~ 283 (366)
T KOG2796|consen 208 ---PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-P 283 (366)
T ss_pred ---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-C
Confidence 24566777888999999999999999999887654444444444433 44566678888888888888764 2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
-|....|.=.-+..-.|+..+|.+.++.|... .|...+.+
T Consensus 284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 34555555555666789999999999999876 45555444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0062 Score=39.57 Aligned_cols=98 Identities=19% Similarity=0.154 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
|..++..++.++++.|+.+....+++....-++ +... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666667777777777776666655432211 1100 0000 1112345677788888888
Q ss_pred HHHhcCChhHHHHHHHHHHH-CCCCCCHHhHHHHHHHHH
Q 047518 199 ELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 236 (256)
+|+..|++..|.++++.+.+ .+++.+..+|..|+.-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888877753 456666777777777543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.015 Score=40.14 Aligned_cols=128 Identities=13% Similarity=0.210 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCcHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPNVVTF 193 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 193 (256)
.|++..-..|..+....|++.+|...|.+...--..-|....-.+.++....+++..|...++.+.+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 466667778889999999999999999998876556677788888888889999999999999988753 2333 45
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
..+.+.+...|++.+|+..|+...+. .|+...-......+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 56778889999999999999999875 566665555555667778766655433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00078 Score=39.16 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=46.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..|.+.+++++|.++++.+...+ +.+...+.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778899999999999998875 346777888888889999999999999988875
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0097 Score=38.68 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=45.4
Q ss_pred CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcC
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g 204 (256)
....|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.-+...-
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999998753 67777888888887665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00098 Score=39.34 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQH----GV-RPD-AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+++.+...|...|++++|...|++..+. |- .|. ..++..+..+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554421 10 011 2345555555566666666666555543
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.02 Score=38.68 Aligned_cols=84 Identities=12% Similarity=-0.020 Sum_probs=39.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
..|++++|..+|+-+.-.+. -+..-|..|..++-..+++++|...|...-..+ .-|+..+.....+|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 44555555555555544321 233344444445555555555555554443322 1233334444455555555555555
Q ss_pred HHHHHH
Q 047518 247 LFVSME 252 (256)
Q Consensus 247 ~~~~m~ 252 (256)
.|...+
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 544433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.048 Score=42.16 Aligned_cols=230 Identities=13% Similarity=0.136 Sum_probs=144.7
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCccc--HHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcC
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSS--FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMG 85 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 85 (256)
.-.-.|++++|.+-|+.|... |.... ..-|.-...+.|..+.|.++-+..-.. -|. .-.+...+...+..|
T Consensus 129 aal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcC
Confidence 334568888888888888641 22211 122223334667778777777776554 233 346778888999999
Q ss_pred CcchHHHHHHHHHhcC-CCCchhh--HHhhhh----------------------hcCCCHHHH-HHHHHHHHhcCCHHHH
Q 047518 86 RVSHGFVVLGRILRSC-FTPDVVT--FTSLIK----------------------VCKPDAITY-NTIIDGLCKQGFVDKA 139 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~-~~~~~~~--~~~ll~----------------------~~~~~~~~~-~~l~~~~~~~~~~~~a 139 (256)
+|+.|+++++.-.... +.++..- -..++. ...||...- ..-..++.+.|+..++
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh
Confidence 9999999998766532 2222111 111111 233443322 2334788999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
-.+++.+.+....|+.. . +..+.+.|+ .+..-+++..+. .++| +......+..+-...|++..|..--+...
T Consensus 283 ~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 283 SKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 99999999986555432 2 222334454 344444443321 1234 45667777888889999998887777666
Q ss_pred HCCCCCCHHhHHHHHHHHH-hcCChhHHHHHHHHHH
Q 047518 218 QHGVRPDAFTYNTLLDGFC-LTGRVNHAKELFVSME 252 (256)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 252 (256)
.. .|....|..|.+.-. ..||-.++..++-+-.
T Consensus 357 r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 357 RE--APRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 53 788888888887654 4599999988876654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.032 Score=39.82 Aligned_cols=182 Identities=16% Similarity=0.185 Sum_probs=97.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
+-.....+.+.|++.+|...|+.+...-. +-.....-.++.++.+.|+++.|...++++++. -|+..
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~--------- 76 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSP--------- 76 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-T---------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCc---------
Confidence 34455566788889999999998876521 112345566778888889999998888888774 12110
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK---PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
...+...+.+.+......... ....... --...+..++.-|-......+|...+..+.+. .- ..-
T Consensus 77 ---~~~~A~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e 144 (203)
T PF13525_consen 77 ---KADYALYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHE 144 (203)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHH
T ss_pred ---chhhHHHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHH
Confidence 011111111111111010000 0000000 01123455555555555666666655555432 01 111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChhHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDA----FTYNTLLDGFCLTGRVNHAK 245 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~ 245 (256)
-.+...|.+.|.+..|..-++.+.+. -|+. .....++.+|.+.|..+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 23567788999999999999998875 2332 35567788888888887544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.04 Score=40.09 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=30.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCC-CCcccHHHHHHHHHccCChHHHHHHHHHHhhC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 65 (256)
|...++.|++++|.+.|+.+....|.. -...+.-.++-++.+.++++.|+..+++..+.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 334455566666666666665544431 12223344445555566666666666555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.062 Score=41.79 Aligned_cols=171 Identities=13% Similarity=0.067 Sum_probs=110.8
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK---QGFVDKAKELFLKMK 147 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 147 (256)
..+...++-+|....+++..+++++.+... |+.. +..+..+-....-++.+ .|+.++|+.++..+.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~---p~~~--------~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL---PTCD--------VANQHNIKFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc---Cccc--------hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 344456666799999999999999998874 1111 01122333345566777 899999999999976
Q ss_pred hCCCCCchHHHHHHHHHHh---------ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh----HHHHHH-
Q 047518 148 DKNVKPNVVTYTSVIRGFC---------YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD----EASSLL- 213 (256)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~----~a~~~~- 213 (256)
.....++..+|..+.+.|- .....++|...|.+..+. .||...--.++..+...|... +..++-
T Consensus 210 ~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 210 ESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred hccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 6666778889988877652 123477888888887765 355444333333344444322 222222
Q ss_pred --HHH-HHCC---CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 214 --DLM-IQHG---VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 214 --~~~-~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+ .+.| -..+-..+..++.++.-.|+.++|.+..++|.+.
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 221 1233 2345566778889999999999999999998753
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.002 Score=49.71 Aligned_cols=248 Identities=11% Similarity=0.053 Sum_probs=136.9
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCChHHHHHHHHHH----hhCCCCC-CHhh
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPV----SSFNIMLGCLAKNKHYDTVLSLFKRL----NSTGLFP-DLYT 73 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~-~~~~ 73 (256)
|...|.++++.|+......+|+...+.|.. |. .+|..|..+|.-.+++++|+++...= +..|-+. ....
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 345678899999999999999999998765 43 34667777888888899998865421 1111000 0111
Q ss_pred HHHHHHHHHhcCCcchHHHHH-----------HHHHhc-----------------CCC-C------chhhHHhhhh----
Q 047518 74 HSILINCFCKMGRVSHGFVVL-----------GRILRS-----------------CFT-P------DVVTFTSLIK---- 114 (256)
Q Consensus 74 ~~~l~~~~~~~~~~~~a~~~~-----------~~~~~~-----------------~~~-~------~~~~~~~ll~---- 114 (256)
...|...+--.|.+++|+-.- +++.+. |.. | +..+-..+-.
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 222333333334444443221 111110 000 0 0000000000
Q ss_pred ------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCC-CchHHHHHHHHHHhccCCHHHHHHH
Q 047518 115 ------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKM----KDKNVK-PNVVTYTSVIRGFCYANDWNEAKRL 177 (256)
Q Consensus 115 ------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 177 (256)
.-......|..|.+.|.-.|+++.|+...+.- .+-|-+ .....+..+-.++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 00011223444455555567777777655432 122211 1334667777788888888888888
Q ss_pred HHHHHH----cC-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CC-CCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 178 FIEMMD----QG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ----HG-VRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 178 ~~~~~~----~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
|+.... .| -.........|...|.-..++++|+..+.+-.. .+ ..-....+.+|..+|...|..++|+.+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 877542 22 122344556677777777788888887765432 11 122445777888888888888888877
Q ss_pred HHHHH
Q 047518 248 FVSME 252 (256)
Q Consensus 248 ~~~m~ 252 (256)
.+.-+
T Consensus 338 ae~hl 342 (639)
T KOG1130|consen 338 AELHL 342 (639)
T ss_pred HHHHH
Confidence 65543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0019 Score=38.07 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-Cc-hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK-PN-VVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
.+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566667777777777777777665432 111 11 3455566666666666666666666554
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.042 Score=39.68 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHHHHHh---CCC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCc-HHHHHHHHHHHH
Q 047518 132 KQGFVDKAKELFLKMKD---KNV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD----QGVQPN-VVTFNVIMDELC 201 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~ 201 (256)
...++++|+++|.+... .+- ..-...+...-+.+.+...+++|-..+.+-.. ..-.++ -..|...|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 34556666666665432 110 11123344455556666666666555444321 111122 234555556666
Q ss_pred hcCChhHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 202 KNGKMDEASSLLDLMIQ---HGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
...++..|.+.++.--. ..-.-+..+...|+.+| ..|+.+++.+++
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 77788888888877332 22233556777777776 457777766654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.036 Score=43.82 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV--VTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+.+...|+.+..+|.+.|++++|+..|++..+....... .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999999998887533111 45899999999999999999999999885
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.12 Score=42.04 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=105.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCC
Q 047518 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC----KQGFVDKAKELFLKMKDKNVK 152 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~ 152 (256)
++....-.|+-+.+++.+.+..+.+-...+..--.+ -.|...+..+. .....+.|.+++..+.+. -
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~L--------L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y 263 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVL--------LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y 263 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHH--------HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C
Confidence 444444567778888887776664322222221111 13444443333 356788999999999987 4
Q ss_pred CchHHHHHH-HHHHhccCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 047518 153 PNVVTYTSV-IRGFCYANDWNEAKRLFIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 153 ~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 228 (256)
|+...|... .+.+...|+.++|.+.++...... .......+--+..++.-.++|++|...|..+.+.. .-+...|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence 566555433 345678899999999999766321 12234455566777888999999999999998753 2234444
Q ss_pred HHHHH-HHHhcCCh-------hHHHHHHHHHHh
Q 047518 229 NTLLD-GFCLTGRV-------NHAKELFVSMES 253 (256)
Q Consensus 229 ~~l~~-~~~~~g~~-------~~a~~~~~~m~~ 253 (256)
.-+.. ++...|+. ++|.+++++...
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44433 44567777 888888877653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.11 Score=41.50 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=35.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+..++-+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555555667777777777666643211 2334556666666677777777666666543
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.035 Score=44.54 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=20.0
Q ss_pred HHHccCChHHHHHHHH--HHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHH
Q 047518 45 CLAKNKHYDTVLSLFK--RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVL 94 (256)
Q Consensus 45 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 94 (256)
...-.++++.+.++.+ .+.. . .| ....+.++..+-+.|..+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~-i~-~~~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-N-IP-KDQGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHS
T ss_pred HHHHcCChhhhhhhhhhhhhcc-c-CC-hhHHHHHHHHHHHCCCHHHHHhhc
Confidence 3444566666655554 1111 1 11 334566666666666666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.037 Score=42.80 Aligned_cols=124 Identities=14% Similarity=0.111 Sum_probs=92.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCC---------CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHH
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDK-----NVK---------PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 192 (256)
.+.|.+.|++..|..-|++.... +.. .-..++..+.-+|.+.+++..|+......+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45788999999999999886532 111 123557788888999999999999999999886 557777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCChhH-HHHHHHHHHh
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF-TYNTLLDGFCLTGRVNH-AKELFVSMES 253 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 253 (256)
.-.=..+|...|+++.|...|+.+.+. .|+-. .-..++.+-.+.....+ ..++|..|-.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777788999999999999999999985 45444 44555555445444443 4677777754
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=45.58 Aligned_cols=97 Identities=9% Similarity=0.014 Sum_probs=73.7
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCC----C---------CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPS----P---------PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP 69 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~----~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 69 (256)
.+..|+.+.+.|++..|...|++....-.. + .-..+++.+..++.+.+++..|+...+..+..+ ++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~ 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PN 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CC
Confidence 356788999999999999999986543211 0 112456677888888888888888888888775 45
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
|.....--..++...|+++.|...|+++++.
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 6677777788888888888888888888874
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.065 Score=37.08 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=99.9
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
-|+...-..|..+..+.|+..+|...|++...-- +..|....-.+.++....+++..|...++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~--------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI--------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc--------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 5777777788999999999999999999988742 23466667778889999999999999999987
Q ss_pred hCC---CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 148 DKN---VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 148 ~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
+.. -.||. --.+.+.+...|.+.+|+..|+..... .|+...-......+.+.|+.+++..-+..+.
T Consensus 152 e~~pa~r~pd~--~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 152 EYNPAFRSPDG--HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hcCCccCCCCc--hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 653 33444 355778889999999999999999987 4444444444455677887776655544443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.013 Score=37.81 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=75.9
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTHSILINCFC 82 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 82 (256)
.|.+....|+.+.|++.|.+.+..-|. ....||.-..++.-.|+.++|++-+++..+..-..+. ..|..-...|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 455667889999999999999887765 6778999999999999999999999998776433233 34444555677
Q ss_pred hcCCcchHHHHHHHHHhcCC
Q 047518 83 KMGRVSHGFVVLGRILRSCF 102 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~ 102 (256)
..|+.+.|..-|+...+.|.
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 88999999999999888764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.051 Score=35.22 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
..+...+......|.-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344555666666677777777776666432 55666666677777777777777777777766664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.046 Score=43.28 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+...++.+..+|...|++++|+..+++.++. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999987 4553 46999999999999999999999999875
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.16 Score=38.95 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
+.-+...|+...|.++-.+.. + |+..-|-..+.+++..++|++-..+... . -++.-|..++.+|.+.|..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCH
Confidence 334444555555555544442 1 3555555666666666666555544321 1 1224555566666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
.+|..++..+ + +..-+..|.+.|++.+|.+.
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 6655555441 1 13334444555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.027 Score=41.57 Aligned_cols=89 Identities=15% Similarity=0.180 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc----------------CCHHHHHH
Q 047518 118 PDAITYNTIIDGLCK-----QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA----------------NDWNEAKR 176 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~~ 176 (256)
.|..+|...+..|.. .+.++-....++.|.+-|+.-|..+|+.|+..+-+- .+-.-++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 455566666665543 466777788888999999999999999999775332 23345788
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
++++|...|+.||..+-..++.++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 899999999999999999999998887753
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.14 Score=37.72 Aligned_cols=97 Identities=22% Similarity=0.276 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-cHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-P-NVVTFNVIM 197 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll 197 (256)
.|+.-+. +.+.|++..|...|....+..+. -....+-.|..++...|+++.|..+|..+.+.-.. | -...+-.+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555443 34455577777777776665321 12334455667777777777777777776654111 1 134555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047518 198 DELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6667777777777777777664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0054 Score=40.39 Aligned_cols=79 Identities=8% Similarity=0.002 Sum_probs=57.1
Q ss_pred ccCCCCCCCcCChhhHHHHHHHHHHhCCCCC-CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 4 KSSGEGDITTITPNEALCIFDYMLRMHPSPP-PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 4 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
.+.|...++.|++++|.+.|+.+....|..+ ...+--.++.+|.+.++++.|...+++.++....-...-|...+.+++
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3456667889999999999999998776522 234566788999999999999999999988753322233444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.1 Score=43.18 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---------
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF--------- 226 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------- 226 (256)
.+...+..-+-+...+.-|.++|..|-+. ..++......++|.+|..+-+...+. .|++.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 33444444444555666666666665432 24566677888899888888776653 33332
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 227 --TYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 227 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
-|...-.+|.++|+-.+|.++++++..+
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2344456788888888998888887654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.22 Score=38.29 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (256)
.+.+..|.-+...|+...|.++-.+. -.|+...|-.-+.+++..++|++-.++-.. .-++.-|...+.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 34455556666677777766665444 246777777778888888888776665432 12345677777777
Q ss_pred HhcCChhHHHHHHHHH
Q 047518 236 CLTGRVNHAKELFVSM 251 (256)
Q Consensus 236 ~~~g~~~~a~~~~~~m 251 (256)
.+.|...+|..++.++
T Consensus 248 ~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI 263 (319)
T ss_pred HHCCCHHHHHHHHHhC
Confidence 7788877777776653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.1 Score=34.48 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=54.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 201 (256)
-.....+.|++++|.+.|+.+..+-+ +-...+--.++.+|.+.+++++|...+++.++.+..-...-|...+.+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34556788999999999999987632 12345567788899999999999999999998754433344544455444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.1 Score=33.86 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=75.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-C----------------CCCcHHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-G----------------VQPNVVT 192 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~----------------~~~~~~~ 192 (256)
..-.|..++..++..+..... +..-+|.+|.-....-+-+-..++++.+-+. . ...+...
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence 345678888888888776542 3333444443332223333333333332210 0 1224556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
+...+.++...|+-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++-+++++.-++|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 6778889999999999999999988643 78888899999999999999999999999999885
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.046 Score=40.39 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----------------ChhHHHHH
Q 047518 154 NVVTYTSVIRGFC-----YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG----------------KMDEASSL 212 (256)
Q Consensus 154 ~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------------~~~~a~~~ 212 (256)
|..+|-..+..+. +.+..+-....++.|.+.|+.-|..+|+.|+..+-+-. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 5666666666653 33567777778889999999999999999998765433 23457899
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
+++|...|+-||..+-..|+.++.+.+-.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 99999999999999999999999877654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.29 Score=38.36 Aligned_cols=177 Identities=15% Similarity=0.045 Sum_probs=118.5
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhh-------------HH
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-------------HS 75 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~ 75 (256)
-+.-.|++++|.+.--..++.... +......-..++...++.+.|...|++..+.+ |+... +.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDAT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 345567888888888888776654 44444444445667788899999999888764 44322 22
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 047518 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155 (256)
Q Consensus 76 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (256)
.-..-..+.|.+..|.+.|.+.+. +.|+. ..++...|.....+..+.|+..+|+.--+........ -.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~--idP~n---------~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yi 321 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALN--IDPSN---------KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YI 321 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhc--CCccc---------cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HH
Confidence 223334567899999999988876 35552 3567778888888999999999999988888765321 22
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP-NVVTFNVIMDELC 201 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~ 201 (256)
..|..-..++...++|++|.+-++...+....+ ...++.....++-
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 344555566777889999999998887653222 2334444433433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.25 Score=41.41 Aligned_cols=182 Identities=18% Similarity=0.119 Sum_probs=106.4
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
|++++|.++|-.+-+ -..-+..+.+.|+|-++.++++.--... -.--...|+.+...+.....|++|.+
T Consensus 748 g~feeaek~yld~dr----------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADR----------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccch----------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777665533 1235666777788877776664421110 00113477888888888888888888
Q ss_pred HHHHHHhcCCCCc-------hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 93 VLGRILRSCFTPD-------VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 93 ~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
+|..-....-..+ -.-...+....+.+....-.+..++.+.|.-++|...|-+-.. | ...+.+|
T Consensus 818 yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tC 888 (1189)
T KOG2041|consen 818 YYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTC 888 (1189)
T ss_pred HHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHH
Confidence 7765432100000 0011112224456666777788888888888888877754322 1 2345677
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHH--------------HHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVT--------------FNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
...++|.+|.++-++..- |...+ ....|..+.++|++-.|.+++.+|.+
T Consensus 889 v~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 888888888877665421 11111 12234556677888788888887764
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.044 Score=40.20 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=73.9
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCC-CCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCC-CC-CHhhHHHHHHHHHhc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FP-DLYTHSILINCFCKM 84 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~ 84 (256)
..+++.|++..|.+.|....+..|. +-....+-=|..++...|++++|..+|..+.+.-. .| -+..+--+..+..+.
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 3457789999999999999998775 12233455688999999999999999999977521 12 235777788888999
Q ss_pred CCcchHHHHHHHHHhc
Q 047518 85 GRVSHGFVVLGRILRS 100 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~ 100 (256)
|+.++|-.+|+++.+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999999986
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.3 Score=39.42 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=96.8
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
-+++++++.++.+.-.- -|. -+..-.+.++..+.+.|.++.|+++.++- . .-.....+.|+++.|.
T Consensus 273 ~~~d~~~v~~~i~~~~l-l~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNL-LPN-IPKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HTT-HHH-----HHHHT-GGG---HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HHHHH
T ss_pred HcCChhhhhhhhhhhhh-ccc-CChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHHHHH
Confidence 45667776666542111 111 22445888999999999999999876432 1 1344556778888887
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCH
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 171 (256)
++.++ ..+...|..|.+...+.|+++-|+..|.+..+ |..++-.|...|+.
T Consensus 339 ~~a~~--------------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 339 EIAKE--------------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDR 389 (443)
T ss_dssp HHCCC--------------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred HHHHh--------------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCH
Confidence 65422 23566888999999999999999999987653 45666777788888
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (256)
+...++.+.....| . ++....++.-.|+.++..+++.+-
T Consensus 390 ~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 390 EKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888887777765 2 333444455567888777776543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.15 Score=33.92 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
..++..+...+.+.....+++.+...+. .+....+.++..|++.+ ..+....++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4567777777888888998888887764 57778888888887653 3444444442 12333445566667777
Q ss_pred CChhHHHHHHHHH
Q 047518 204 GKMDEASSLLDLM 216 (256)
Q Consensus 204 g~~~~a~~~~~~~ 216 (256)
+.++++.-++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 7776666666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.021 Score=29.27 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
++..+..+|...|++++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.43 Score=37.34 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=100.9
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHh---cCCcchHHHHHHHHHhcCCCCchhhHHh
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTHSILINCFCK---MGRVSHGFVVLGRILRSCFTPDVVTFTS 111 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (256)
+...++-+|....+++..+++++.+.... +..+..+-....-++.+ .|+.++|+.++..++...-.+++.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d---- 218 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD---- 218 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH----
Confidence 34455667999999999999999998752 11122233344556667 899999999999966654444433
Q ss_pred hhhhcCCCHHHHHHHHHHHH----h-----cCCHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHhccC-CHHHHHHHH
Q 047518 112 LIKVCKPDAITYNTIIDGLC----K-----QGFVDKAKELFLKMKDKNVKPNVV---TYTSVIRGFCYAN-DWNEAKRLF 178 (256)
Q Consensus 112 ll~~~~~~~~~~~~l~~~~~----~-----~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~-~~~~a~~~~ 178 (256)
+|..+...|- . ...+++|+..|.+.-+.. |+.. -+..++....... .-.+..++-
T Consensus 219 ----------~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~ 286 (374)
T PF13281_consen 219 ----------TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIG 286 (374)
T ss_pred ----------HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHH
Confidence 4444443332 1 234778888888766543 3322 1222333322211 111222222
Q ss_pred ---HHH-HHcC---CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 179 ---IEM-MDQG---VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 179 ---~~~-~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..+ .+.| -..+-..+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 287 ~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 287 VKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 221 1232 2345666788999999999999999999999976
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.24 Score=41.55 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=39.5
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhC-CCCCC--------HhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPD--------LYTHSILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
|-+..|..+.......-.++.|+..|-+.... |++.- ...-..=+.+ --|++++|+++|-++-++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh
Confidence 56678999998888888888888888665432 22211 0111111112 247788888888776554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.23 Score=33.58 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=47.0
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
++.++.+++..+++.+.-..|..+...++...+ +...|+|.+|.++|+.+.+.+ |....-..|+..|..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 456788889999998887777655555555444 467889999999999987663 344444445544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.038 Score=28.33 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
++..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455556666666666666666666654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0076 Score=29.01 Aligned_cols=32 Identities=9% Similarity=0.402 Sum_probs=23.5
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHccCChHHHH
Q 047518 23 FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVL 56 (256)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 56 (256)
|++.++..|. +..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 4566666654 7777888888888888888775
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.21 Score=37.28 Aligned_cols=78 Identities=12% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCcHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-----QGVQPNVVTFNV 195 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 195 (256)
.++..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34556666777777777777777777666433 666677777777777777777777776654 366666655555
Q ss_pred HHHH
Q 047518 196 IMDE 199 (256)
Q Consensus 196 ll~~ 199 (256)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.4 Score=41.01 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=65.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL--YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 40 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
..-+..+.+..-++.|+.+.+.- +..++. ........-+.+.|++++|...|-+-... ++|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s------------ 401 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS------------ 401 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH------------
Confidence 34455555666666666655432 222221 23333344455678888888777665542 1111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 181 (256)
-++.-|........-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+..
T Consensus 402 -------~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 402 -------EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred -------HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 1344455555566666666777776665 4444566777777777766655554443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.52 Score=35.55 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=125.7
Q ss_pred CCCcCChhhHHHHHHHHHHhC-CCCCCc------ccHHHHHHHHHccC-ChHHHHHHHHHHhhC--------CCCCCH--
Q 047518 10 DITTITPNEALCIFDYMLRMH-PSPPPV------SSFNIMLGCLAKNK-HYDTVLSLFKRLNST--------GLFPDL-- 71 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~-- 71 (256)
..+.|+++.|..++.+..... ..+|+. ..|+. .......+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 357899999999999987755 322332 12333 33334455 888887777765332 122332
Q ss_pred ---hhHHHHHHHHHhcCCcch---HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047518 72 ---YTHSILINCFCKMGRVSH---GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145 (256)
Q Consensus 72 ---~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (256)
.++..++.+|...+..+. |..+++.+.... +..+.++..-+..+.+.++.+++.+++..
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---------------~~~~~~~~L~l~il~~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY---------------GNKPEVFLLKLEILLKSFDEEEYEEILMR 146 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---------------CCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence 467778888888776654 445555554331 11233444456677778999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHh--ccCCHHHHHHHHHHHHHcCCCCcHH-HHHHH----HHHHHhcCC------hhHHHHH
Q 047518 146 MKDKNVKPNVVTYTSVIRGFC--YANDWNEAKRLFIEMMDQGVQPNVV-TFNVI----MDELCKNGK------MDEASSL 212 (256)
Q Consensus 146 ~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l----l~~~~~~g~------~~~a~~~ 212 (256)
|...-. .....+..++..+. .......+...+..+....+.|... ....+ +....+.++ .+....+
T Consensus 147 mi~~~~-~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~ 225 (278)
T PF08631_consen 147 MIRSVD-HSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEEL 225 (278)
T ss_pred HHHhcc-cccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHH
Confidence 987622 13344555555442 2234456777777776554555443 11111 111222222 4444455
Q ss_pred HHHHHH-CCCCCCHHhHHHHH-------HHHHhcCChhHHHHHHHHH
Q 047518 213 LDLMIQ-HGVRPDAFTYNTLL-------DGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 213 ~~~~~~-~~~~~~~~~~~~l~-------~~~~~~g~~~~a~~~~~~m 251 (256)
++.+.+ .+.+.+..+-.++. ..+.+.+++++|.++++--
T Consensus 226 ~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 226 LSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 554332 23334444433322 3355789999999998743
|
It is also involved in sporulation []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.28 Score=34.18 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCcHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---GVQPNVVTFNV 195 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 195 (256)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+.... +-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3577889999999999999999999988754443 345677888888999999999998887643 22222222111
Q ss_pred HH--HHHHhcCChhHHHHHHHHHH
Q 047518 196 IM--DELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 196 ll--~~~~~~g~~~~a~~~~~~~~ 217 (256)
.. -.+...+++..|.+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 22346789999998887664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.6 Score=35.73 Aligned_cols=151 Identities=11% Similarity=0.025 Sum_probs=89.7
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK---NVKPNVVTYTS 160 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 160 (256)
.|++.+|-..++++++ ..+.|..++.-.=.+|...|+.+.-...++++... +++-....-..
T Consensus 116 ~g~~h~a~~~wdklL~---------------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gm 180 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD---------------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGM 180 (491)
T ss_pred cccccHHHHHHHHHHH---------------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHH
Confidence 4455555555555554 34555666666667777788888777777777654 22222222233
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHhHHHHHHHHHh
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH---GVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 237 (256)
..-++...|-+++|++.-++..+.+ +.|.-.-.+....+.-.|++.++.++..+-... +.-.-...|-...-.+..
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 3344566788888888888777664 456666667777777788888887776654321 111111223333444555
Q ss_pred cCChhHHHHHHHH
Q 047518 238 TGRVNHAKELFVS 250 (256)
Q Consensus 238 ~g~~~~a~~~~~~ 250 (256)
.+.++.|+++|++
T Consensus 260 ~aeye~aleIyD~ 272 (491)
T KOG2610|consen 260 GAEYEKALEIYDR 272 (491)
T ss_pred ccchhHHHHHHHH
Confidence 6777777777654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.02 Score=43.36 Aligned_cols=94 Identities=11% Similarity=-0.032 Sum_probs=69.7
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
+...|+.|++.|.+++|++.|.......|. |.+++..-..+|.+.+++..|+.-.+.....+ ..-...|..-+.+--
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~--NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH--NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC--CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 356789999999999999999998776654 88889999999999999998888777766542 112234555555555
Q ss_pred hcCCcchHHHHHHHHHh
Q 047518 83 KMGRVSHGFVVLGRILR 99 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~ 99 (256)
..|...+|.+-++.++.
T Consensus 177 ~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLA 193 (536)
T ss_pred HHhhHHHHHHhHHHHHh
Confidence 56677777777766665
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.15 Score=31.02 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555566666666666666666666666666666555
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.3 Score=36.51 Aligned_cols=79 Identities=9% Similarity=0.097 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHhHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-----HGVRPDAFTYNT 230 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 230 (256)
.++..++..+...|+.+.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456677788888899999999999999875 56889999999999999999999999998865 688898888777
Q ss_pred HHHHH
Q 047518 231 LLDGF 235 (256)
Q Consensus 231 l~~~~ 235 (256)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 76663
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.97 Score=36.97 Aligned_cols=163 Identities=13% Similarity=0.184 Sum_probs=108.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCC-CCCC-----HhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCchhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPD-----LYTHSILINCFCK----MGRVSHGFVVLGRILRSCFTPDVVT 108 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 108 (256)
+..+++...=.|+-+.+++.+....+.+ +.-. .-+|+..+..+.. ....+.|.++++.+.++
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-------- 262 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-------- 262 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------
Confidence 5667777778899999999998876643 2211 1234444444443 34556788888888775
Q ss_pred HHhhhhhcCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 109 FTSLIKVCKPDAITYNTI-IDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 109 ~~~ll~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
-|+...|... ...+...|++++|+..|+...... .+.....+--+.-.+....+|++|...+..+.+.
T Consensus 263 --------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 263 --------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred --------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 2444444433 467788999999999999765321 1123334444556677889999999999999986
Q ss_pred CCCCcHHHHHHHHHHH-HhcCCh-------hHHHHHHHHHHH
Q 047518 185 GVQPNVVTFNVIMDEL-CKNGKM-------DEASSLLDLMIQ 218 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~-~~~g~~-------~~a~~~~~~~~~ 218 (256)
. ..+..+|..+..+| ...|+. ++|.++|.+...
T Consensus 335 s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 335 S-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred c-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4 44555665554443 467777 888888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.092 Score=36.81 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=74.7
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCC---cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPP---VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 78 (256)
+|...|+.++.+|++++|..-|...+...|..+. ...|..-..++.+.+.++.|+.-....++.+. ........-.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRA 175 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRA 175 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHH
Confidence 5677789999999999999999999987665222 12355556678889999999999988887752 1223334445
Q ss_pred HHHHhcCCcchHHHHHHHHHhc
Q 047518 79 NCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
.+|.+...++.|+.-|.++.+.
T Consensus 176 eayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 6788889999999999999885
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.62 E-value=1.2 Score=37.80 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=34.0
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCC----CCHhhHHHHHHHHHhcCCcchHHHHHHHH
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF----PDLYTHSILINCFCKMGRVSHGFVVLGRI 97 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 97 (256)
+..+|..+.......|+.+.|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhl 572 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHL 572 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHH
Confidence 4457777888778888888888877643322210 11122333444444555555444444333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.91 Score=36.23 Aligned_cols=150 Identities=13% Similarity=0.047 Sum_probs=92.4
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCC----cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHH--HHh
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPP----VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC--FCK 83 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 83 (256)
.-+++++++|..+|.++.+.....|. ...-+.++++|... +.+.....+..+.+. .| ...|-.+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 45688999999999998775443122 12235677777654 556555555555544 22 2334444443 357
Q ss_pred cCCcchHHHHHHHHHhc--CCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCchHH
Q 047518 84 MGRVSHGFVVLGRILRS--CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN----VKPNVVT 157 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 157 (256)
.+.+.+|.+.+...... +..+.. .+.-+...-+|-..=++.+..+...|.+.++..++++|...= ..-+..+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~--Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPW--LDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccch--hhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 78899999988777665 333221 111111222333344667788899999999999999887543 3367788
Q ss_pred HHHHHHHH
Q 047518 158 YTSVIRGF 165 (256)
Q Consensus 158 ~~~li~~~ 165 (256)
|+.++-.+
T Consensus 170 yd~~vlml 177 (549)
T PF07079_consen 170 YDRAVLML 177 (549)
T ss_pred HHHHHHHH
Confidence 88755443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.04 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 047518 228 YNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
+..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566666666666666666666
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.57 Score=33.41 Aligned_cols=222 Identities=17% Similarity=0.089 Sum_probs=149.8
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
+....+...+.......+.......+......+...+.+..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444555555555543332112456777888888888899888888887652 223455667777777778888888888
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHhccC
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID-GLCKQGFVDKAKELFLKMKDKNV--KPNVVTYTSVIRGFCYAN 169 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~ 169 (256)
.+.........+ ......... .+...|+++.|...+........ ......+......+...+
T Consensus 117 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 117 LLEKALALDPDP---------------DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHcCCCCc---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 888887743222 111222223 78899999999999999855322 123344444444566788
Q ss_pred CHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
+.+.+...+....... .. ....+..+...+...++++.+...+...... .|+ ...+..+...+...+..+++...
T Consensus 182 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (291)
T COG0457 182 RYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEA 258 (291)
T ss_pred CHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHH
Confidence 9999999999998763 23 4677888888888899999999999988875 333 44555555555567778888887
Q ss_pred HHHHHh
Q 047518 248 FVSMES 253 (256)
Q Consensus 248 ~~~m~~ 253 (256)
+.+..+
T Consensus 259 ~~~~~~ 264 (291)
T COG0457 259 LEKALE 264 (291)
T ss_pred HHHHHH
Confidence 776654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.44 Score=42.34 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=66.5
Q ss_pred CCCHhhH----HHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 68 FPDLYTH----SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 68 ~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
.|+...+ .+....+.+...+++|.-.|+..-+. ...+.+|..+|+|.+|..+.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----------------------ekAl~a~~~~~dWr~~l~~a 988 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-----------------------EKALKAYKECGDWREALSLA 988 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-----------------------HHHHHHHHHhccHHHHHHHH
Confidence 4555444 34444455667777777777665442 23467788888888888887
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (256)
.++.....+ -..+-..|+.-+...++.-+|-++..+.... | .-.+..+++...|++|.++-.
T Consensus 989 ~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 989 AQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHH
Confidence 776532111 1112245667777788888888887776543 1 112233444455555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.052 Score=26.39 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
|..|...|.+.|++++|+.+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.45 Score=31.59 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=85.1
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
.....++..+.+.+.+..+..+++.+...+ ..+...++.++..|++.+. .+....+.. .
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---------------- 66 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---------------- 66 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c----------------
Confidence 345678888888888999999999988876 3677788999999887543 333444432 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
.+......++..|.+.+.++++.-++..+.. .......++. ..++.+.|.+++.+. .+...|..+
T Consensus 67 -~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~---~~~d~~~a~~~~~~~------~~~~lw~~~ 131 (140)
T smart00299 67 -SNHYDIEKVGKLCEKAKLYEEAVELYKKDGN-----FKDAIVTLIE---HLGNYEKAIEYFVKQ------NNPELWAEV 131 (140)
T ss_pred -cccCCHHHHHHHHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHH---cccCHHHHHHHHHhC------CCHHHHHHH
Confidence 1111223467778888888888888877643 2223333332 227888888877752 255678888
Q ss_pred HHHHHh
Q 047518 197 MDELCK 202 (256)
Q Consensus 197 l~~~~~ 202 (256)
+..+..
T Consensus 132 ~~~~l~ 137 (140)
T smart00299 132 LKALLD 137 (140)
T ss_pred HHHHHc
Confidence 777654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.13 Score=31.69 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.57 Score=35.84 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=91.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhcCC
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKNGK 205 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~ 205 (256)
..-.|...+|-..++++.+.- +-|..++...=++|...|+...-...++++... ..||. ..-..+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345678888888888888763 447778888888999999999999999998865 12333 333445556679999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
+++|++.-++..+.+ +.|.....++...+...|+..++.++..+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 999999999988764 55677778888888899999999988765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.2 Score=35.64 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=87.0
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
+|-..+....+..-.+.|..+|-++.+.| +.+++.+++.++..++ .|+...|..+|+--... .|
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~------------ 463 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FP------------ 463 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CC------------
Confidence 45566666667777778888888887777 4566777777776554 46677777777655443 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
.++.--+..+..+..-++-+.|..+|+....+ +..+ ...|..+|.-=..-|+...+..+=+.+... .|...+..
T Consensus 464 -d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~e 539 (660)
T COG5107 464 -DSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIE 539 (660)
T ss_pred -CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHH
Confidence 12222344566667777777788887744332 1112 345777776666777777777666666653 34443444
Q ss_pred HHHHHH
Q 047518 195 VIMDEL 200 (256)
Q Consensus 195 ~ll~~~ 200 (256)
.+.+-|
T Consensus 540 vF~Sry 545 (660)
T COG5107 540 VFTSRY 545 (660)
T ss_pred HHHHHH
Confidence 444333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.43 Score=36.08 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=55.9
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
|.+....+...++..-....+++.+...+-.+.... ..|+. +-..+++. +..-++++++.++..=...|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 344455555555555555566666666666555321 11111 11112222 22335556666666666667777777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+++.+++.+.+.+++.+|..+.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777666555543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.74 Score=34.87 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK---NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
..+.+...++..-....+++.++..+-+++.. ...|+... ...++.+.+ =++++++.++..-+..|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhhHH
Confidence 33344444555555567777777777776543 12222222 223333322 36668888888888888889999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+++.+.+.+++.+|.++.-.|..+
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999988888887776654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.7 Score=36.51 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH----------
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV---------- 190 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------- 190 (256)
.+...+...+.+...+..|-++|..|-+. ..+++.+...++|++|..+-+...+. .||.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 34444444455566667777777766432 45677888999999999998876653 3332
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 191 -VTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 191 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.-|...-.+|-++|+..+|.++++++-..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 22344556788889999999998887654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.1 Score=34.19 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc--cC----ChHHHHHHHHHHhhCCCC---CCHhhHHHHHHHHHhcCC
Q 047518 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK--NK----HYDTVLSLFKRLNSTGLF---PDLYTHSILINCFCKMGR 86 (256)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 86 (256)
+++.+.+++.+.+.|.. .+..+|-+....... .. ...+|..+|+.|++...- ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk-~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFK-RSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccC-ccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 44556677777777665 444444332222211 22 245778888888776422 333444444432 2222
Q ss_pred c----chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCchHHHHH
Q 047518 87 V----SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF--VDKAKELFLKMKDKNVKPNVVTYTS 160 (256)
Q Consensus 87 ~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (256)
. +.++.+|+.+.+.|+..+.. ....+.++........ ...+..+++.+.+.|+++....|..
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~------------LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGND------------LQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcH------------HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 2 34556666666666654322 1222333332222222 3366677777777777766665554
Q ss_pred H
Q 047518 161 V 161 (256)
Q Consensus 161 l 161 (256)
+
T Consensus 223 l 223 (297)
T PF13170_consen 223 L 223 (297)
T ss_pred H
Confidence 3
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.6 Score=35.06 Aligned_cols=64 Identities=13% Similarity=-0.042 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
|+.....+..+....++++.|...|++....++. ...+|......+...|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3444444444444445555555555555444321 222222222233334555555555555444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.5 Score=34.50 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=117.5
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHH--HHccCChHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCC
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGC--LAKNKHYDTVLSLFKRLNSTGLFPDLY--THSILINCFCKMGR 86 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 86 (256)
.-.|+-..|.++-.+..+.-. .|......++.+ ..-.|+++.|.+-|+.|... |... -...|.-..-+.|.
T Consensus 95 agAGda~lARkmt~~~~~lls--sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 95 AGAGDASLARKMTARASKLLS--SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hccCchHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhccc
Confidence 345677777777766544322 355555555543 34569999999999999863 2221 22233333446788
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchH--HHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVV--TYTSVIR 163 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~li~ 163 (256)
.+.|.++-+...... +.-.-.+...+...+..|+|+.|+++.+.-+... +.++.. .-..|+.
T Consensus 170 reaAr~yAe~Aa~~A---------------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 170 REAARHYAERAAEKA---------------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHHHHHHHHhhc---------------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 888888877776531 2234467788999999999999999998766542 233321 1122222
Q ss_pred HH---hccCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 164 GF---CYANDWNEAKRLFIEMMDQGVQPNVV-TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 164 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
+- .-..+...|...-.+..+. .||.. .-.....++.+.|+..++..+++.+-+. .|.+..+.
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~ 300 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIAL 300 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHH
Confidence 21 1123455566655555543 44432 2334456778888888888888888876 34444333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.87 Score=31.72 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHhHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQ---HGVRPDAFTYNT 230 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~ 230 (256)
..+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.++......+++..+...+.+... .|..++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5678889999999999999999999987644443 34567788888999999999999887764 222222221111
Q ss_pred HHH--HHHhcCChhHHHHHHHH
Q 047518 231 LLD--GFCLTGRVNHAKELFVS 250 (256)
Q Consensus 231 l~~--~~~~~g~~~~a~~~~~~ 250 (256)
... .+...+++.+|-+.|-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHc
Confidence 222 23456888888877643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.8 Score=35.07 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
..+-..+..++-+.|+.++|.+.+++|.+.. ..........|+.++...+.+.++..++.+-.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444567778889999999999999998642 12244578889999999999999999988754
|
The molecular function of this protein is uncertain. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.97 Score=31.13 Aligned_cols=124 Identities=19% Similarity=0.145 Sum_probs=81.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHH-H--HHHHHHHHHhcCC
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV-T--FNVIMDELCKNGK 205 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~~~ll~~~~~~g~ 205 (256)
..+.+..++|+..|..+.+.|...-+. ............|+...|...|+++-.....|-.. - -..-...+...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356778889999999998876542221 11222234567788899999999888664444322 1 1112234567888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+++...-.+.+-..+-+.....-..|.-+-.+.|++.+|.++|+.+.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888777776554444444556676677788999999988887653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.77 Score=29.97 Aligned_cols=93 Identities=18% Similarity=0.076 Sum_probs=72.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHhc
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV---VTFNVIMDELCKN 203 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~ 203 (256)
..+....|+++.|+..|.+....-++ ....||.-.+++.-.|+.++|++=+++..+..-.-.. ..|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34778899999999999988776433 7788999999999999999999999998875212122 2334444567788
Q ss_pred CChhHHHHHHHHHHHCC
Q 047518 204 GKMDEASSLLDLMIQHG 220 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~ 220 (256)
|+-+.|..=|+..-..|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999999888877
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.076 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=18.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
-+.+..+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3556777888888888888887775
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.2 Score=31.57 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=60.0
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHH
Q 047518 45 CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYN 124 (256)
Q Consensus 45 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 124 (256)
.+.+.|+ +.|.+.|-.+...+..-++.....+...| ...+.++++.++.+.++..- ++ ..+|+..+.
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~-~~----------~~~n~eil~ 182 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSN-PD----------DNFNPEILK 182 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcC-CC----------CCCCHHHHH
Confidence 3444444 67888888888877665666655555555 46788999999988887522 11 146788889
Q ss_pred HHHHHHHhcCCHHHHH
Q 047518 125 TIIDGLCKQGFVDKAK 140 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~ 140 (256)
.|++.|.+.|+++.|.
T Consensus 183 sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 183 SLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHhcchhhhh
Confidence 9999999999998874
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.96 Score=30.22 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=37.4
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 66 (256)
.++++++..+++.+.-..|..+...++...+ +...|+|.+|.++|+.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 6777888888888877666655555555444 457788888888888887764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.7 Score=32.66 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=97.5
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 047518 80 CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159 (256)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (256)
.....|++.+|...|....... +.+...--.+..+|...|+.+.|..++..+...--........
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~---------------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~ 207 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA---------------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQ 207 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC---------------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHH
Confidence 4556788888888888877642 2334455667889999999999999999876542222223333
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhc
Q 047518 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 238 (256)
.-|..+.+.....+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. .-+...-..++..+.-.
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 3445555555555555555555543 23666777888889999999999888877765321 22455677778877777
Q ss_pred CChhHHH
Q 047518 239 GRVNHAK 245 (256)
Q Consensus 239 g~~~~a~ 245 (256)
|.-+.+.
T Consensus 286 g~~Dp~~ 292 (304)
T COG3118 286 GPADPLV 292 (304)
T ss_pred CCCCHHH
Confidence 7444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.15 E-value=2.1 Score=33.28 Aligned_cols=234 Identities=13% Similarity=0.054 Sum_probs=135.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCC-CCCcccHHHHHHHHHccCChHHHHHHHH----HHhhCC-CCCCHhhHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFK----RLNSTG-LFPDLYTHSILINC 80 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~ 80 (256)
|..+.+..+.++|+..+.+.+.+-.. ..-..++..+..+.++.|.+++++..-- ...+.. -..-...|..+.++
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677788888887776543211 1223456667777888888777655322 222110 01112345556666
Q ss_pred HHhcCCcchHHHHHHHHHhc-CCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCc
Q 047518 81 FCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-----NVKPN 154 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~ 154 (256)
+-+..++.+++.+-..-... |..|.. ......-++..++.-.+.+++++..|+..... +....
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~-----------~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQ-----------LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCccc-----------ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 66656666666655443332 222211 01123344667788888899999888876542 12223
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-----cHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCC
Q 047518 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQP-----NVVTFNVIMDELCKNGKMDEASSLLDLMIQ----HGV 221 (256)
Q Consensus 155 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~ 221 (256)
..++..+-..|.+..|+++|.-+..+..+. ++.. .......+.-++...|..-.|.+.-++..+ .|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 467788888889999999988877765532 2111 112233445566777877777777766543 442
Q ss_pred CC-CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 222 RP-DAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 222 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
.+ .......+.+.|...|+.+.|+.-++..
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22 2234566777888889988887766543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.23 Score=38.93 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=96.5
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHH----hhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHh
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRL----NSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (256)
..|..|...|.-.|+++.|+...+.- .+.|-.. -...+..+..++.-.|+++.|.+.|.......+.....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---- 271 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---- 271 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch----
Confidence 46778888888889999998876653 3334322 23578889999999999999999998755421111111
Q ss_pred hhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-----NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 112 ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.....++-.|.+.|.-..++++|+.++.+-... ...-...++=.+-.+|...|..++|+.+.+..++
T Consensus 272 -----~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 272 -----TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred -----hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 123445677888898899999999988764321 1112445666788889999999999888776653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.88 Score=39.08 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=45.3
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
.-+.++|++++|.+-|-+... ...| ..++.-|....+....-.+++.+.+.|.. +...-..|+.+|.+.++.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~--~le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG--FLEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc--cCCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 334556666666666554432 1111 12455555566666666666667666643 444556677777777766
Q ss_pred chHHHHHHH
Q 047518 88 SHGFVVLGR 96 (256)
Q Consensus 88 ~~a~~~~~~ 96 (256)
++-.++.+.
T Consensus 448 ~kL~efI~~ 456 (933)
T KOG2114|consen 448 EKLTEFISK 456 (933)
T ss_pred HHHHHHHhc
Confidence 655544433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.95 E-value=2.1 Score=32.61 Aligned_cols=133 Identities=10% Similarity=0.193 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh--cC----CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHH
Q 047518 52 YDTVLSLFKRLNSTGLFPDLYTHSILINCFCK--MG----RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNT 125 (256)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 125 (256)
+++...+++.|.+.|..-+..+|-........ .. ....|..+|+.|.+.- |-. ..++...+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H--~fL---------Ts~~D~~~a~ 146 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH--PFL---------TSPEDYPFAA 146 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC--ccc---------cCccchhHHH
Confidence 34556677777777777666555443332222 11 2345667777777641 110 0123333344
Q ss_pred HHHHHHhcCC----HHHHHHHHHHHHhCCCCCchH--HHHHHHHHHhccCC--HHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 047518 126 IIDGLCKQGF----VDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYAND--WNEAKRLFIEMMDQGVQPNVVTFNVIM 197 (256)
Q Consensus 126 l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll 197 (256)
++.. ..++ .+.++.+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.|+++....|..+.
T Consensus 147 lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 147 LLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 3332 2222 345667777777766654332 22333332222222 346667777777777776666555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.4 Score=33.06 Aligned_cols=67 Identities=13% Similarity=0.042 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP---DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 187 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.....+|..++..+.+.|.++.|...+..+...+... .+.+...-+......|+..+|+..++...+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456688899999999999999999999888643211 344555556677788999999998887765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.8 Score=31.68 Aligned_cols=195 Identities=12% Similarity=0.102 Sum_probs=106.4
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCC----cccHHHHHHHHHccCChHHHHHHHHHH----hhCCCCCCHhh--HHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPP----VSSFNIMLGCLAKNKHYDTVLSLFKRL----NSTGLFPDLYT--HSIL 77 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~--~~~l 77 (256)
.+|....+++.|...+.+..+-.....+ ...|...+-...+...+.++..++++. .+.| .|+... ..-.
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtAAmaleKA 117 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTAAMALEKA 117 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchHHHHHHHH
Confidence 3455667888888877776542221011 123344444445556666666666654 3334 333321 1111
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 047518 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVKP 153 (256)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 153 (256)
.. ....-++++|+++|++....-...+. ...-...+..+...+.+...+++|-..+.+-... .-.+
T Consensus 118 ak-~lenv~Pd~AlqlYqralavve~~dr---------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~ 187 (308)
T KOG1585|consen 118 AK-ALENVKPDDALQLYQRALAVVEEDDR---------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN 187 (308)
T ss_pred HH-HhhcCCHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence 11 23445666777777665442100000 0112234555666777777887777666543211 1111
Q ss_pred c-hHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 047518 154 N-VVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASSLLD 214 (256)
Q Consensus 154 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (256)
+ ...|...|-.+....++..|..+++.-.+.+ -.-+..+...|+.+| ..|+.+++.+++.
T Consensus 188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 2 2345666667777889999999998854321 233567788888876 4678887776654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.8 Score=31.14 Aligned_cols=191 Identities=15% Similarity=0.071 Sum_probs=112.8
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
..|.-|-+.|-+.-|.--|.+.....|. -+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.--
T Consensus 70 ERGvlYDSlGL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~ 146 (297)
T COG4785 70 ERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYG 146 (297)
T ss_pred HhcchhhhhhHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeec
Confidence 4566677778888888888888776665 45569999999999999999999999998874332222333333 23345
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCchHHHHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL-KMKDKNVKPNVVTYTSVIR 163 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~ 163 (256)
|+++-|.+-+.+..+..-. | |=...|--+. -..-++.+|..-+. +.... |..-|...|-
T Consensus 147 gR~~LAq~d~~~fYQ~D~~-D------------PfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV 206 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPN-D------------PFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIV 206 (297)
T ss_pred CchHhhHHHHHHHHhcCCC-C------------hHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHH
Confidence 7888888777776664211 1 1111222111 22334555554433 22222 4344444443
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCC-------cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQP-------NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
.|. .|++. ...+++.+... .+. -..||-.+..-+...|+.++|..+|+-....++
T Consensus 207 ~~y-LgkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 207 EFY-LGKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHH-Hhhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 332 23321 12233333322 111 145677788888899999999999998887643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.22 Score=24.76 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.9 Score=31.42 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=72.6
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHh-hHHHHHHH
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-THSILINC 80 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 80 (256)
.+...|+.|....+++.|+..|-+.+..+|. .+.-|..-+.++.+.++++.+..--...++. .|+.. ....+..+
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~--~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPT--VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQW 87 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCC--cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHH
Confidence 4567789999999999999998888775553 4456777788888899999888777776665 45543 44556677
Q ss_pred HHhcCCcchHHHHHHHHHh
Q 047518 81 FCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~ 99 (256)
......++.|+..+++...
T Consensus 88 ~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHhhccccHHHHHHHHHHH
Confidence 7888999999999988854
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.037 Score=36.97 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=55.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..+....+++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5666777777777777787777665555677777788888877766777666651 112334556677777777
Q ss_pred hhHHHHHHHHHH
Q 047518 206 MDEASSLLDLMI 217 (256)
Q Consensus 206 ~~~a~~~~~~~~ 217 (256)
++++.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.32 Score=22.97 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 226 FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+|..+..+|...|++++|+..+++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666777777777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.3 Score=24.21 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45666666666666666666666554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=3.8 Score=33.30 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=78.0
Q ss_pred HHHHhcCCHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 128 DGLCKQGFVDKAKE-LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 128 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
.--...|++-.|.+ ++..+....-.|+....... .+...|+++.+.+.+...... +.....+...+++.....|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33445566665544 44444444334455444433 345778999988887776544 334556777888888888999
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+.|..+-..|....++ ++.......-.....|-++++...|+++.
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 9999888888876554 44444444444456677888888887764
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.21 Score=25.62 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=12.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 047518 231 LLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 231 l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.9 Score=29.64 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=20.0
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 56 LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
.++++.+.+.+++|+...+..+++.+.+.|++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 344445555666666666666666666666543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.04 E-value=4.8 Score=33.87 Aligned_cols=179 Identities=9% Similarity=0.010 Sum_probs=106.1
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHH----HH-HHccCChHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHH
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIML----GC-LAKNKHYDTVLSLFKRLNS-------TGLFPDLYTHSILINCFC 82 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 82 (256)
....|.+.++.....+.. .....+. .+ +...++.+.|+.+++.+.+ .| .......+..+|.
T Consensus 227 ~~~~a~~~~~~~a~~g~~----~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS----EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhhHHHHHHHHHHhhcch----HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 456788888888776643 2222222 22 4456789999999998876 44 3345666777777
Q ss_pred hcC-----CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCc
Q 047518 83 KMG-----RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK---QGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 83 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
+.. +.+.|..++.+..+.|.... . ..+...|.. ..+...|..+|...-+.|.. .
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g~~~a---------------~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~ 361 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELGNPDA---------------Q--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L 361 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcCCchH---------------H--HHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H
Confidence 754 44568888888887654322 1 122223322 24678999999998888753 2
Q ss_pred hHHHHHHHHHH--hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 155 VVTYTSVIRGF--CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 155 ~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
..-+..++-.. ....+...|..++++..+.| .|...--...+..+.. ++++.+.-.+..+...|
T Consensus 362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 22222222111 23347888888888888887 3332222233333444 66666666666655544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.41 Score=22.57 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.1 Score=30.30 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=55.6
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCCh
Q 047518 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ---HGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
..+.|+ +.|.+.|-.+...+.--+......+...|. ..+.+++..++....+ .+-.+|+..+..|+..|.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 355555 567777777776665545555555555554 6788888888887764 23367888899999999999988
Q ss_pred hHHH
Q 047518 242 NHAK 245 (256)
Q Consensus 242 ~~a~ 245 (256)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.95 E-value=5.9 Score=35.88 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=99.2
Q ss_pred HHHHHccCChHHHHHHHHHHhhCC-----CCCCH--hhHHHHHHHHHhcC--CcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTG-----LFPDL--YTHSILINCFCKMG--RVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~--~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
+-+-..+.++.+-+.+++++.+.. .+.|. .-|...+..+...| -+++...+.+ +.|+-+ -.+
T Consensus 858 ~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~---kh~Ly~------~aL 928 (1265)
T KOG1920|consen 858 LVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIK---KHGLYD------EAL 928 (1265)
T ss_pred HHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHH---hcccch------hhh
Confidence 334455677777777777776431 11111 12333444444444 3444443332 222211 112
Q ss_pred hhcCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 047518 114 KVCKPDAITYNT----IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189 (256)
Q Consensus 114 ~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 189 (256)
.-..++...+.. ....+.....+++|.-.|+..-+. ...+.+|...|+|.+|+.+..++.... .--
T Consensus 929 ~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~-de~ 998 (1265)
T KOG1920|consen 929 ALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK-DEL 998 (1265)
T ss_pred heeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH-HHH
Confidence 234555554444 444555677888888777765432 345677888899999999888775321 111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
..+-..|+.-+...+++-+|.++..+.... ....+..|++...|++|.++.
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHH
Confidence 222366778888999999999998887653 122233344445555555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.42 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+..+..++...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666667777777777777766554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=92.82 E-value=2.6 Score=31.48 Aligned_cols=88 Identities=10% Similarity=0.050 Sum_probs=51.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-----
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL----- 200 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----- 200 (256)
=|.+++..++|.+++...-+--+.--+........=|-.|.+.+++..+.++-.......-.-+...|..++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 367778888888777666554332212233334444555677888888777777776542222233355544443
Q ss_pred HhcCChhHHHHHH
Q 047518 201 CKNGKMDEASSLL 213 (256)
Q Consensus 201 ~~~g~~~~a~~~~ 213 (256)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 4567888887776
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.81 E-value=3.2 Score=31.23 Aligned_cols=86 Identities=10% Similarity=0.162 Sum_probs=56.2
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCC
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDL-----MIQHGVRP 223 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~ 223 (256)
+..++..+...++..++..++|.+-.++|+..... +..-|.+.|..+|..-...|+..-..++.++ +.+.++..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v 276 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV 276 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC
Confidence 34566667777777778888888888877777654 4556777788888888888877766666553 22344555
Q ss_pred CHHhHHHHHHHH
Q 047518 224 DAFTYNTLLDGF 235 (256)
Q Consensus 224 ~~~~~~~l~~~~ 235 (256)
+...-..+-..+
T Consensus 277 ~~~L~~~L~~LF 288 (292)
T PF13929_consen 277 TDELRSQLSELF 288 (292)
T ss_pred CHHHHHHHHHHH
Confidence 555444444333
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.72 E-value=2.9 Score=30.47 Aligned_cols=29 Identities=3% Similarity=0.085 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
+..+...-+..+++.+|+++|++.....+
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445566777777777777765443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.71 E-value=2.5 Score=36.08 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHH
Q 047518 53 DTVLSLFKRLNS-TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131 (256)
Q Consensus 53 ~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~ 131 (256)
.+-+++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+..- ||...|..-+.+++
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki------------------pdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI------------------PDKRLWWLKLTALA 726 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC------------------cchhhHHHHHHHHH
Confidence 334444444422 23222333444555566667777777777666542 55666666677777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
..++|++-+++-+..+ ++.-|.-+..+|.+.|+.++|...+.+.... . ....+|.+.|++.+|.+
T Consensus 727 ~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHH
Confidence 7787777666555443 2445666777788888888887777554221 1 44566777777777766
Q ss_pred HHHH
Q 047518 212 LLDL 215 (256)
Q Consensus 212 ~~~~ 215 (256)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 5543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.54 E-value=3.4 Score=30.84 Aligned_cols=189 Identities=12% Similarity=0.144 Sum_probs=109.7
Q ss_pred CCcCChhhHHHHHHHHHHhCCCC--CCcccHHHHHHHHHccCChHHHHHHHHHHhh---CCCC--CCHhhHHHHHHHHHh
Q 047518 11 ITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS---TGLF--PDLYTHSILINCFCK 83 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~ 83 (256)
.+...+++|+.-|++..+..+.+ ....+...++....+.+++++....+.+|.. +.+. -+..+.+.++..-+.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 34568999999999998876542 2234456788999999999999998888743 2222 234566777776665
Q ss_pred cCCcchHHHHHHHHHhcCC-CCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C------
Q 047518 84 MGRVSHGFVVLGRILRSCF-TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV----K------ 152 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~------ 152 (256)
..+.+.-..+|+.-++.-- ..+. ...-.+-+.|...|...+.+.+..+++.++.+.-- .
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNe----------RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKG 187 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNE----------RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKG 187 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcc----------eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhcc
Confidence 5555444444443222100 0000 00011223466677777888888888877764311 0
Q ss_pred -CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHH-----HhcCChhHHH
Q 047518 153 -PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTFNVIMDEL-----CKNGKMDEAS 210 (256)
Q Consensus 153 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~-----~~~g~~~~a~ 210 (256)
--...|..-|+.|....+-.....++++...-. .-|.+... .+|+-| .+.|++++|.
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHH
Confidence 013457777777877777777777777765321 22333332 333333 3556666654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.44 E-value=3.3 Score=30.51 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (256)
.|+.. ..-.+.|++++|...|+.+... .+-++ -...+.-.++-++.+.++++.|+...++....-+.
T Consensus 37 LY~~g-~~~L~~gn~~~A~~~fe~l~~~-~p~s~-----------~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 37 LYNEG-LTELQKGNYEEAIKYFEALDSR-HPFSP-----------YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHc-CCCCc-----------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 34433 3445678888888888877754 11111 12334455667778888888888888887765433
Q ss_pred CchHHHHHHHHHHhcc-------CCHH---HHHHHHHHHHHc----CCCCcHHHH------------HHHHHHHHhcCCh
Q 047518 153 PNVVTYTSVIRGFCYA-------NDWN---EAKRLFIEMMDQ----GVQPNVVTF------------NVIMDELCKNGKM 206 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~-------~~~~---~a~~~~~~~~~~----~~~~~~~~~------------~~ll~~~~~~g~~ 206 (256)
-....|...|.+.+.- .+.. .|..-+++++.. ...||...- ..+.+.|.+.|.+
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 3333444444444321 2233 334444444433 112222111 3455678889999
Q ss_pred hHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDA---FTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
-.|..-++.|.+. .+-+. ...-.+..+|...|-.++|.+.-+-+
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 9999889888876 33232 34556677888888888887765443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.32 Score=34.72 Aligned_cols=75 Identities=9% Similarity=0.096 Sum_probs=57.6
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC--CCCCHhhHHHHHHHH
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCF 81 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~ 81 (256)
..++.+++.+++++++...+.-.+..|. |...-..++..++-.|+|++|..-++-.-+.. ..+-...|..++.+-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt--da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT--DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc--cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3455678889999999999888886665 77788889999999999999998887765542 234456777777653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.7 Score=26.92 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
=+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++.. +.+....|..++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 366777777888888999999999999999999999999999998855 2333336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.63 Score=21.76 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.|..+...|...|++++|...|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666667777776666666543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.7 Score=26.59 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+.=++.+-++.+......|++....+.+++|.+.+++..|.++++-.+.. +..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44567778888888888999999999999999999999999999988744 2224456665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.3 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 229 NTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+..++.+.|++++|.+.|+++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566666777777777776654
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.95 E-value=4.2 Score=30.63 Aligned_cols=119 Identities=9% Similarity=0.097 Sum_probs=83.0
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHhc-cC-CHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChhH
Q 047518 133 QGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCY-AN-DWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDE 208 (256)
Q Consensus 133 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~ 208 (256)
...+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +..++..+...++..+++.++|.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445677777774322 2344477777888877655 22 333344444444432 457788899999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 209 ASSLLDLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 209 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
-.++++.-... +..-|...|..+|......|+..- +++++..|
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~----~~kiI~~G 264 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV----MRKIIDDG 264 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH----HHHHhhCC
Confidence 99999987754 456688899999999999999854 44555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.94 E-value=3.5 Score=29.71 Aligned_cols=135 Identities=17% Similarity=0.158 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc------------
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ------------ 184 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------ 184 (256)
+.-+.+||-|.-.+...|+++.|.+.|+...+.++.-+-...|.-|.. .--|++.-|.+-+...-..
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 344678999999999999999999999999887654333333333332 2345555555444333322
Q ss_pred ----CCCCcH--------------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------CHHhHHHHHHHHHhcC
Q 047518 185 ----GVQPNV--------------VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP-------DAFTYNTLLDGFCLTG 239 (256)
Q Consensus 185 ----~~~~~~--------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g 239 (256)
.+.|.. .-|...|-.+. .|++. ...+++.+... -.. -..||.-+...+...|
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY-LGKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccc
Confidence 222211 11211111111 01111 12223333221 111 1357888888899999
Q ss_pred ChhHHHHHHHHHHhcC
Q 047518 240 RVNHAKELFVSMESMG 255 (256)
Q Consensus 240 ~~~~a~~~~~~m~~~g 255 (256)
+.++|..+|+-.+.++
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999998776654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.93 E-value=4.9 Score=31.32 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=94.7
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC--------CCCCHhhHHHHHHHHH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--------LFPDLYTHSILINCFC 82 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 82 (256)
-+.|+++...+....... ..++...+..+... +.++++++...++.....- .......|..++...
T Consensus 9 Wrl~~Wd~l~~~~~~~~~---~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq- 82 (352)
T PF02259_consen 9 WRLGDWDLLEEYLSQSNE---DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ- 82 (352)
T ss_pred HhcCChhhHHHHHhhccC---CChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh-
Confidence 456777774444433321 11233344444433 7889999988888765431 111122333333221
Q ss_pred hcCCcchHHHHH--------------HHHHh--cCCCCchhhHHhhhh------h----cCCCHHHHHHHHHHHHhcCCH
Q 047518 83 KMGRVSHGFVVL--------------GRILR--SCFTPDVVTFTSLIK------V----CKPDAITYNTIIDGLCKQGFV 136 (256)
Q Consensus 83 ~~~~~~~a~~~~--------------~~~~~--~~~~~~~~~~~~ll~------~----~~~~~~~~~~l~~~~~~~~~~ 136 (256)
...+++++..+. +...+ .+..++..++..++. . ......+|..++..+.+.|.+
T Consensus 83 ~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~ 162 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNF 162 (352)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCc
Confidence 122223333322 11111 133555555555554 2 334556788889999999999
Q ss_pred HHHHHHHHHHHhCCCCC---chHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 137 DKAKELFLKMKDKNVKP---NVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 137 ~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
+.|...+..+...+... .......-+...-..|+..+|...++....
T Consensus 163 ~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 163 QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999988754221 233344455666778999999999888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=6.2 Score=31.95 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhC-CCCCc-hHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 047518 136 VDKAKELFLKMKDK-NVKPN-VVTYTSVIRGFCY---------ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 136 ~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 204 (256)
.+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.+..+...+.+ +-|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677777777621 12222 3344433333211 233455666666666665 346666666666667777
Q ss_pred ChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 205 KMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+++.|...|++.... .|+ ..+|........-+|+.++|.+.+++-.
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 788888888877764 343 3455555555666778888877777643
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.64 E-value=2.4 Score=27.50 Aligned_cols=45 Identities=9% Similarity=0.205 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+.+..+....+.|+.......+++|.+.+++..|.++|+-...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444555556666666666666666666666666655543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.75 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777776666543
|
... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.43 E-value=4.9 Score=30.36 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=93.3
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------h------------
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK-------D------------ 148 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~------------ 148 (256)
.+|.++|.-+++..- -..+-..++.++....+..+|...+.... .
T Consensus 150 ~KA~ELFayLv~hkg----------------k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d 213 (361)
T COG3947 150 RKALELFAYLVEHKG----------------KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQD 213 (361)
T ss_pred hHHHHHHHHHHHhcC----------------CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcC
Confidence 467888887776521 11222334555666666666655554321 1
Q ss_pred -------CCCCCchHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCCCC----------------cHHHHHHHHHHHHhcC
Q 047518 149 -------KNVKPNVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQGVQP----------------NVVTFNVIMDELCKNG 204 (256)
Q Consensus 149 -------~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~ll~~~~~~g 204 (256)
.+++-|..-|-..++..... ..++++.+++......-++- -..+++.....|..+|
T Consensus 214 ~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g 293 (361)
T COG3947 214 RKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAG 293 (361)
T ss_pred CceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12344556666666554322 33555555555543221110 1234566778899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+.+|.++.+.....+ +.+...+..++..+...||--.+.+-++++.+
T Consensus 294 ~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 294 KPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred ChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 9999999999998863 56777888999999999998888877776653
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.055 Score=36.11 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
..+....+.++..|++.+..++...+++.. +..-...++..|.+.|.++++.-++.++....-.
T Consensus 39 ~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~a--------- 102 (143)
T PF00637_consen 39 ENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEA--------- 102 (143)
T ss_dssp C-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTC---------
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchHHHHHHHHHHcccHHHH---------
Confidence 355777888888888887777777776611 1122345666667777777776665554322111
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
+..+...++++.|.++..+ .++...|..++..|...+.
T Consensus 103 l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 103 LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 1112334455555432222 2356677777777766554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.14 E-value=3.6 Score=28.30 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 20 LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
.+....+.+.+.. ++...+..++..+.+.|++.....+ ...++-+|.......+-.+. +....+.++--+|.+
T Consensus 14 lEYirSl~~~~i~-~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIP-VQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 4445555555655 6777888888888888886654444 44555556554444432222 233444444444444
Q ss_pred cCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHH
Q 047518 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179 (256)
Q Consensus 100 ~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 179 (256)
+ -...+..++..+...|++-+|.++.+..... +......++.+-.+.+|...-..+++
T Consensus 87 R------------------L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 87 R------------------LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred H------------------hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 0113445566777777777777777665332 11222445555555666555555555
Q ss_pred HHHH
Q 047518 180 EMMD 183 (256)
Q Consensus 180 ~~~~ 183 (256)
-...
T Consensus 145 ff~~ 148 (167)
T PF07035_consen 145 FFEE 148 (167)
T ss_pred HHHH
Confidence 5544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.37 Score=21.32 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 047518 229 NTLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~ 249 (256)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344455555555555555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.68 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=14.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
|....-.+|.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344445555555555555555555443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.81 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=14.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666666543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.63 E-value=7.5 Score=32.61 Aligned_cols=132 Identities=18% Similarity=0.159 Sum_probs=78.9
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
..+.++..+.++|-.++|+++- +|... -.....+.|+++.|.++..+.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~-------------------- 663 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEA-------------------- 663 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhh--------------------
Confidence 4566777777777777766542 22211 122334567777776655433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 197 (256)
.+..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.| ..|...
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~AF----- 728 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNLAF----- 728 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccchHH-----
Confidence 2345577788888888888888888776543 3456666666677666666666666655 333322
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 047518 198 DELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~ 216 (256)
.+|...|+++++.+++..-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 2344567777777766543
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.7 Score=28.16 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
+..+-++.+...++.|++......+++|.+.+|+..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666777778889999999999999999999999999999987653
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.19 E-value=1.1 Score=20.90 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666677777777777666544
|
... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.15 E-value=7.4 Score=30.19 Aligned_cols=138 Identities=8% Similarity=0.038 Sum_probs=89.3
Q ss_pred cCCCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQG------------FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.+.|+.+|-.++..--..- -.+.-+.++++..+.+. -+.......+..+.+..+.++..+-|+++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456666666664432221 14566677888777744 4777788888888888899999999999998
Q ss_pred cCCCCcHHHHHHHHHHHHh---cCChhHHHHHHHHHHH------CCC----CCCH-------HhHHHHHHHHHhcCChhH
Q 047518 184 QGVQPNVVTFNVIMDELCK---NGKMDEASSLLDLMIQ------HGV----RPDA-------FTYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 184 ~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~------~~~----~~~~-------~~~~~l~~~~~~~g~~~~ 243 (256)
.. +-+...|...+..... .-.++....+|.+... .+. .+.. .++..+......+|..+.
T Consensus 94 ~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 94 KN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred HC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 74 3367788888877654 2345566666655432 111 1111 123334444567899999
Q ss_pred HHHHHHHHHhcC
Q 047518 244 AKELFVSMESMG 255 (256)
Q Consensus 244 a~~~~~~m~~~g 255 (256)
|..+++-+.+.+
T Consensus 173 Ava~~Qa~lE~n 184 (321)
T PF08424_consen 173 AVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHH
Confidence 999999888754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.93 E-value=4.6 Score=27.52 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
+..-.+.++.+.+..++..+....+. |...++... .+...|+|.+|..+++++.... |....-..|+..|....+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC
Confidence 34456678999999999998876433 223333333 3467899999999999987663 443334444444443333
Q ss_pred hhHHHHHHHHHHHCC
Q 047518 206 MDEASSLLDLMIQHG 220 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~ 220 (256)
-..=...-+++.+.+
T Consensus 93 D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 93 DPSWRRYADEVLESG 107 (160)
T ss_pred ChHHHHHHHHHHhcC
Confidence 223333334455543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.76 E-value=22 Score=35.15 Aligned_cols=237 Identities=13% Similarity=0.032 Sum_probs=123.3
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCCcc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-THSILINCFCKMGRVS 88 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 88 (256)
....|++++|...|+.+.+.++. ....++-++......|.+..++-..+-....- .+... .++.-+.+-.+.++++
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~--~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPD--KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCc--cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 34578899999999999886654 56678878877778888888877666655442 22222 2333344556777777
Q ss_pred hHHHHHHHHHhcCCCCchh-hHHhhhhhcCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHh--------
Q 047518 89 HGFVVLGRILRSCFTPDVV-TFTSLIKVCKPDAITYNTII-----------DGLCKQGFVDKAKELFLKMKD-------- 148 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~-------- 148 (256)
....... ...+..-... +-..++...+.|......++ .++...|-+..+.++.-++..
T Consensus 1536 ~~e~~l~--~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1536 LLESYLS--DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hhhhhhh--cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 7666644 1111111111 11222222233332221111 122222222222222221110
Q ss_pred ---CCCCCch------HHHHHHHHHHhccCCHHHHHHHH-HHHHHcCCCC-----cHHHHHHHHHHHHhcCChhHHHHHH
Q 047518 149 ---KNVKPNV------VTYTSVIRGFCYANDWNEAKRLF-IEMMDQGVQP-----NVVTFNVIMDELCKNGKMDEASSLL 213 (256)
Q Consensus 149 ---~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~ 213 (256)
.++.++. .-|...+..-....+..+-.-.+ +.+......| -..+|-...+....+|+++.|...+
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1122221 11222222111111111111111 1122221122 2567888888888999999998887
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
-...+.+ -+..+-..+......|+...|+.++++..+.
T Consensus 1694 l~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1694 LNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred Hhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7766654 3345666677888999999999999987754
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.72 E-value=5.3 Score=28.88 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--VQPNVVTFNVIMDE 199 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~ 199 (256)
.-++.+.+.+.+.+++.....-.+..+. +..+-..+++.++-.|+|++|..-++-.-... ..+-..+|..++.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3456777888899999888877766433 66677778888999999999988777665532 23345667666665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.68 E-value=5.6 Score=28.11 Aligned_cols=190 Identities=17% Similarity=0.081 Sum_probs=135.0
Q ss_pred cCChHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHH
Q 047518 49 NKHYDTVLSLFKRLNSTGLF-PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~ 127 (256)
.+....+...+......... .....+......+...+.+..+...+....... ........+....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 102 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELE-------------LLPNLAEALLNLG 102 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhh-------------hccchHHHHHHHH
Confidence 45666666777666655322 135677778888888999998888888776530 1123455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcC
Q 047518 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR-GFCYANDWNEAKRLFIEMMDQGV--QPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g 204 (256)
..+...+.+..+...+.........+ ......... .+...|+++.+...+.+...... ......+......+...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 103 LLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 88888888999999999988765443 222222333 78899999999999999966321 123344444455567889
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 205 KMDEASSLLDLMIQHGVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+.+.+...+....... +. ....+..+...+...++++.|...+....+
T Consensus 182 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 182 RYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred CHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 9999999999998762 33 467788888899999999999998887665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.54 E-value=12 Score=31.59 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=66.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 209 (256)
..+.|+++.|.++..+.. +..-|..|-++....+++..|.+.+.+... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 456678887777665543 566788888888899999999888877654 44555566667776655
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
..+-....+.|. .|....+|...|++++..+++.+
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 555555555542 23334456667777777776643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=89.46 E-value=10 Score=30.75 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=119.5
Q ss_pred HHHHHHHHHhCCCCCCc-ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC----CHhhHHHHHHHHHhcCCcchHHHHH
Q 047518 20 LCIFDYMLRMHPSPPPV-SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP----DLYTHSILINCFCKMGRVSHGFVVL 94 (256)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 94 (256)
.++++...+.... |+- -....+...+.+ +.+++..+.+.+....+.+ -..++..++....+.++...|.+.+
T Consensus 245 mq~l~~We~~yv~-p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 245 MQILENWENFYVH-PNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHhhccC-CchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444443333 332 223334444433 6677777666665443221 2357788888888888888888888
Q ss_pred HHHHhcCCCCchhhHHhhhh-------hcCCCHHHHHH------------------------H---HHHHHhcCC-HHHH
Q 047518 95 GRILRSCFTPDVVTFTSLIK-------VCKPDAITYNT------------------------I---IDGLCKQGF-VDKA 139 (256)
Q Consensus 95 ~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~~~------------------------l---~~~~~~~~~-~~~a 139 (256)
.-+.- ++|+...-..++- .+..|...++. | ..-+.+.|. -++|
T Consensus 322 ~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 322 ALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHH
Confidence 76654 3444433333321 11111111111 1 122333444 6677
Q ss_pred HHHHHHHHhCCCCCchHHHHHHH----HHHh---ccCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHH--HHHhcCCh
Q 047518 140 KELFLKMKDKNVKPNVVTYTSVI----RGFC---YANDWNEAKRLFIEMMDQGVQPNV----VTFNVIMD--ELCKNGKM 206 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li----~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~--~~~~~g~~ 206 (256)
+.+++.+.+-..- |...-|.+. ..|. ....+..-..+-+-+.+.|++|-. ..-|.+.+ .+...|++
T Consensus 400 lnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 400 LNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 7777776654211 222222221 1221 123344444444455566766532 23333333 24567888
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
+++.-.-.-+.+ +.|++.+|..+.-+.....++++|..+++.+
T Consensus 479 ~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 479 HKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 877554444433 6889999999998888999999999988765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.35 E-value=12 Score=31.57 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhhCCCCCCHhhHHHHHH--H-HHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHH
Q 047518 52 YDTVLSLFKRLNSTGLFPDLYTHSILIN--C-FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128 (256)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~ 128 (256)
...|.++++.....|.. ........+. . +....+.+.|+.+++.+.+. +.+ . ....++.....+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~-~~~------~---a~~~~~~a~~~lg~ 296 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAES-FKK------A---ATKGLPPAQYGLGR 296 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHH-HHH------H---HhhcCCccccHHHH
Confidence 45788888888877632 1111111111 2 34567889999999988772 000 0 00012223455666
Q ss_pred HHHhcC-----CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-
Q 047518 129 GLCKQG-----FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY-ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC- 201 (256)
Q Consensus 129 ~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~- 201 (256)
+|.+.. +.+.|..+|...-+.|.+ +...+-..+.-... ..+...|.++|......|.. ....+..++....
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGL 374 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCC
Confidence 666643 677899999999888754 55443333332222 24678999999999998843 3323322222222
Q ss_pred -hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 202 -KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 202 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
...+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 3347889999999998887 3332222223333334 77777776666665544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.32 E-value=7.8 Score=29.31 Aligned_cols=171 Identities=10% Similarity=0.074 Sum_probs=101.5
Q ss_pred HHccCChHHHHHHHHHHhhCC--CCCCH------hhHHHHHHHHHhcC-CcchHHHHHHHHHhc----C-CCCchhhHHh
Q 047518 46 LAKNKHYDTVLSLFKRLNSTG--LFPDL------YTHSILINCFCKMG-RVSHGFVVLGRILRS----C-FTPDVVTFTS 111 (256)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 111 (256)
..+.|+.+.|..++.+..... ..|+. ..|+. .......+ +++.|..++++..+. + .......+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~- 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS- 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH-
Confidence 357899999999999986543 22332 12333 33344456 899999988887664 1 011100000
Q ss_pred hhhhcCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 047518 112 LIKVCKPDAITYNTIIDGLCKQGFVDK---AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188 (256)
Q Consensus 112 ll~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 188 (256)
..-..++..++.+|...+..+. |..+++.+...... ...++..-+..+.+.++.+.+.+.+.+|+..- ..
T Consensus 81 -----elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~ 153 (278)
T PF08631_consen 81 -----ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DH 153 (278)
T ss_pred -----HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-cc
Confidence 0122466778888988887664 55555556444222 34455566777777899999999999999762 22
Q ss_pred cHHHHHHHHHHH---HhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 189 NVVTFNVIMDEL---CKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 189 ~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
....+..++..+ ... ....+...+..+....+.|...
T Consensus 154 ~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred ccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 334555555544 332 3456667776666444455543
|
It is also involved in sporulation []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.89 E-value=6.7 Score=27.98 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPN----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
.+-+.+.|++++|..-|......-.... ...|..-..++.+++.++.|+.-....++.+.. .......-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 4568889999999999999887633222 244555556778889999999988888887532 23334444567888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH
Q 047518 203 NGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
...+++|+.=|..+.+. .|...
T Consensus 181 ~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHh--CcchH
Confidence 89999999999999875 45544
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.27 E-value=2.3 Score=24.93 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=19.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHH
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSL 212 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~ 212 (256)
..++.++|+..|+...+.-..+. -.++..++.+++..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554443322111 12334444444444444444433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.24 E-value=6.8 Score=27.24 Aligned_cols=139 Identities=9% Similarity=0.090 Sum_probs=95.9
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...|...++ +.+.+..++|+.-|..+.+.|...-+. -.-..........|+...|...|+++-...
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Ypv-------------LA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPV-------------LARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchH-------------HHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 345555554 356788899999999999887653221 122234456778999999999999997765
Q ss_pred CCCchH-HHHHHHH--HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 151 VKPNVV-TYTSVIR--GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 151 ~~~~~~-~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
..|-.. -...+-. .+...|.++....-++-+...+-+.....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 125 ~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 125 SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 444433 2222222 346778899888888877766544455566777778889999999999999987643333
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.10 E-value=4.5 Score=25.07 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (256)
..++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.. ..||...|.++.. .+.|-.+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 467888887777766432 2333334445677889999998887666 4788888877644 47787787777777
Q ss_pred HHHHCCCCCCHHhH
Q 047518 215 LMIQHGVRPDAFTY 228 (256)
Q Consensus 215 ~~~~~~~~~~~~~~ 228 (256)
.|...| .|....|
T Consensus 93 rla~sg-~p~lq~F 105 (115)
T TIGR02508 93 RLAASG-DPRLQTF 105 (115)
T ss_pred HHHhCC-CHHHHHH
Confidence 887776 4444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.97 E-value=14 Score=30.54 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=117.7
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.|....-+++..+.++-.+.-+..+..+|...| -+...|..++++|... ..++-..+++++.+..+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df----------- 129 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF----------- 129 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-----------
Confidence 455566778888888888888999999998875 3667888899988887 56677788888877532
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCC
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-----PNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-QGVQ 187 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~ 187 (256)
.|++.-.-|...|-+ ++.+.+...|.++..+=++ .-...|..+.... ..+.+..+.+...+.. .|..
T Consensus 130 ----nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~ 202 (711)
T COG1747 130 ----NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEG 202 (711)
T ss_pred ----hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccc
Confidence 233333444555555 7778888888877654221 1123455555421 3567777777777664 3434
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
.-...+..+-.-|....++.+|++++..+.+.+ ..|...-..++.-
T Consensus 203 ~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 203 RGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 445566666677888888999999988777653 3344444444443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.75 E-value=6.7 Score=27.34 Aligned_cols=78 Identities=9% Similarity=0.116 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC-----------hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH-----------YDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
.+++|+.-|++.+...|. ...++..+..++...+. +++|...|++.... .|+..+|+.-+....
T Consensus 50 miedAisK~eeAL~I~P~--~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~- 124 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPN--KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA- 124 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-
Confidence 467788888888887775 44556666666554432 45566666666554 789999998887763
Q ss_pred cCCcchHHHHHHHHHhcCC
Q 047518 84 MGRVSHGFVVLGRILRSCF 102 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~ 102 (256)
+|-.++.++.+.+.
T Consensus 125 -----kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 -----KAPELHMEIHKQGL 138 (186)
T ss_dssp -----THHHHHHHHHHSSS
T ss_pred -----hhHHHHHHHHHHHh
Confidence 46677777776644
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.34 E-value=4.2 Score=23.92 Aligned_cols=46 Identities=7% Similarity=0.029 Sum_probs=19.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHH
Q 047518 202 KNGKMDEASSLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
...+.++|+..|....+.-..+. ..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554443311111 12344445555555555554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.13 E-value=4.8 Score=30.41 Aligned_cols=60 Identities=8% Similarity=0.051 Sum_probs=49.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
++...+.|..+|.+.+|.++.+...... +.+...+-.++..+...|+--.+.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3456678889999999999999998875 56788899999999999998888888877654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.02 E-value=15 Score=28.92 Aligned_cols=170 Identities=12% Similarity=0.056 Sum_probs=103.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhC-CCCC---CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNST-GLFP---DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
|-.+.+++.+.-++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+.....+.
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-------- 157 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-------- 157 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC--------
Confidence 444555555555555555554443322 2222 1134455777888888999999999988764222111
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCchHHHHH-----HHHHHhccCCHHHHHHHHHHHHH--
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD----KNVKPNVVTYTS-----VIRGFCYANDWNEAKRLFIEMMD-- 183 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~-- 183 (256)
......+|..|...|.+..++++|.-+..+..+ .++..-..-|.. +.-++...|....|.+.-++..+
T Consensus 158 -~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 158 -AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred -ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 112345788899999999999999877665432 233311122332 23455677888888887777653
Q ss_pred --cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 184 --QGVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 184 --~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.|-.+ -......+.+.|...|+.+.|..-|++..
T Consensus 237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 33222 24456677888999999998888777654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.76 E-value=9.9 Score=26.56 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 047518 120 AITYNTIIDGLCKQG----F-------VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 186 (256)
..++..+..+|...+ + +++|...|+...+. .|+..+|+.-+... .+|-.+..++.+++.
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 345555666555432 2 45555555555554 67888888777765 345666666666543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.65 E-value=2.1 Score=34.42 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=70.8
Q ss_pred cccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHH
Q 047518 3 LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCF 81 (256)
Q Consensus 3 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (256)
+...+..++..+.++.|..++.++++..+. .+..|..-..++.+.+++..|+.=+..+++.. |+ ...|..-..++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpn--ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPN--CAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAV 82 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCc--ceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHH
Confidence 456678889999999999999999997764 66677766688999999999999888888764 33 23444445566
Q ss_pred HhcCCcchHHHHHHHHHh
Q 047518 82 CKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~ 99 (256)
...+.+.+|...|+....
T Consensus 83 m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKK 100 (476)
T ss_pred HhHHHHHHHHHHHHHhhh
Confidence 666777777777777665
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=85.65 E-value=6.5 Score=24.41 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (256)
..++|..+-+-+...+-. ....-.+=+..+...|++++|..+.+.+ ..||...|.+|.. .+.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 356666666655554321 2222233355678999999999988776 4789888888754 46777777777666
Q ss_pred HHHhcC
Q 047518 250 SMESMG 255 (256)
Q Consensus 250 ~m~~~g 255 (256)
+|-.+|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 666554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.14 E-value=24 Score=30.50 Aligned_cols=213 Identities=12% Similarity=0.047 Sum_probs=109.7
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHH---HhcC----------
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI---LRSC---------- 101 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~---------- 101 (256)
+...--....+....|+.+.|......+...|. ..+..++.++..+.+.|.+.... +.+++ ...|
T Consensus 128 ~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~ 205 (644)
T PRK11619 128 PVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAK 205 (644)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 444445566677778887778777777776663 34566677777776655554322 11111 1111
Q ss_pred -CCCchh----hHHhhh----------hhcCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCC-CCCch--HHHHHH
Q 047518 102 -FTPDVV----TFTSLI----------KVCKPDAITYNTIIDGL--CKQGFVDKAKELFLKMKDKN-VKPNV--VTYTSV 161 (256)
Q Consensus 102 -~~~~~~----~~~~ll----------~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l 161 (256)
+.++.. .+..+. ..++++...-..++-++ ....+.+.|...+....... ..+.. ..+..+
T Consensus 206 ~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 285 (644)
T PRK11619 206 QLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIV 285 (644)
T ss_pred hcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 111111 011111 11112221111111121 12445577777777664332 22111 122333
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
.......+...++...++...... .+......-+....+.++++.+...+..|.... .-...-...+..++...|+.
T Consensus 286 A~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~ 362 (644)
T PRK11619 286 AWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRK 362 (644)
T ss_pred HHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCH
Confidence 222223222445555555443321 234444555556668889988888888875432 33455667778887778999
Q ss_pred hHHHHHHHHHH
Q 047518 242 NHAKELFVSME 252 (256)
Q Consensus 242 ~~a~~~~~~m~ 252 (256)
++|...|++..
T Consensus 363 ~~A~~~~~~~a 373 (644)
T PRK11619 363 AEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHh
Confidence 99999888764
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.93 E-value=13 Score=27.28 Aligned_cols=26 Identities=4% Similarity=0.023 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 228 YNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+.-+...-+..+++.+|+++|+++..
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444667888899999887754
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.38 E-value=18 Score=28.31 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=55.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
.+-|.+.|.+++|+++|..-..... -+.+++..-..+|.+...+..|+.=....+..+ ...+.+|.+.+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHH
Confidence 4678999999999999998776532 288888889999999999988877666665432 2234555555544
Q ss_pred hHHHHHHH
Q 047518 207 DEASSLLD 214 (256)
Q Consensus 207 ~~a~~~~~ 214 (256)
..++..+.
T Consensus 175 R~~Lg~~~ 182 (536)
T KOG4648|consen 175 RESLGNNM 182 (536)
T ss_pred HHHHhhHH
Confidence 44433333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.15 E-value=28 Score=30.40 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=73.7
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC----------------------C
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG----------------------L 67 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------~ 67 (256)
+++.+.+++|+++-+.....-+.......+...|..+.-.|+++.|-...-.|.... +
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc
Confidence 356678888888876654322211133467788888888888888877666654321 1
Q ss_pred C------CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh-------hcCCCHHHHHHHHHHHHhcC
Q 047518 68 F------PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------VCKPDAITYNTIIDGLCKQG 134 (256)
Q Consensus 68 ~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~~~l~~~~~~~~ 134 (256)
. .+...|..++..+.. .+ ..-|.+.++. .++....-...+. ....+...-..|+..|...+
T Consensus 446 lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~-Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~ 519 (846)
T KOG2066|consen 446 LPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE-WPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDN 519 (846)
T ss_pred CCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh-CChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHcc
Confidence 1 134566666666655 11 1222222221 1111111111111 11223344555889999999
Q ss_pred CHHHHHHHHHHHHh
Q 047518 135 FVDKAKELFLKMKD 148 (256)
Q Consensus 135 ~~~~a~~~~~~~~~ 148 (256)
+++.|...+-..++
T Consensus 520 ~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 520 KYEKALPIYLKLQD 533 (846)
T ss_pred ChHHHHHHHHhccC
Confidence 99999988876654
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.12 E-value=9.1 Score=27.06 Aligned_cols=53 Identities=13% Similarity=0.000 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 167 YANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
...+.+......+...+. ...|+...|..++.++...|+.++|.+...++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444333333321 23678888888888888888888888888887764
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.52 E-value=18 Score=27.74 Aligned_cols=72 Identities=19% Similarity=0.390 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHH-HHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHH-HHHcCCCCcHHHHHHHHHHHHhcCChhHH
Q 047518 132 KQGFVDKAKELFL-KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE-MMDQGVQPNVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 132 ~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 209 (256)
+...+++...... +|++.++ |+......+-++......|.+-.++..+ ..+ ...+|..|+.+++..|+.+..
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHH
Confidence 3344455444443 4555544 4543333333333333444433332222 222 234688888888888876543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.41 E-value=11 Score=25.35 Aligned_cols=53 Identities=9% Similarity=0.202 Sum_probs=38.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 131 CKQGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
...++++.+..+++.|....+. +...++...+ +...|+|++|.++++++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 4488899999999988765332 2334444433 467899999999999998764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.83 E-value=0.82 Score=35.02 Aligned_cols=96 Identities=10% Similarity=0.017 Sum_probs=74.6
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRV 87 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 87 (256)
-....|.++.|++.|...+..++ +....|.--.+.+.+.+++..|++=+....+. .||. .-|-.--.+....|+|
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHhcCcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhch
Confidence 34567889999999999988665 47777888888999999999999999888776 3443 3444444555667999
Q ss_pred chHHHHHHHHHhcCCCCchhh
Q 047518 88 SHGFVVLGRILRSCFTPDVVT 108 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~ 108 (256)
++|...+....+.++.+....
T Consensus 199 e~aa~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHHHHHHhccccHHHHH
Confidence 999999999999887776543
|
|
| >COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.71 E-value=12 Score=25.13 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=28.0
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 204 (256)
..+.+.|.+++.. -..++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344445443332 22344444444444555555555555544444444444444444444
|
|
| >PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B | Back alignment and domain information |
|---|
Probab=82.47 E-value=6.5 Score=21.88 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 189 NVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
|-.-.-.++.++...|++++|.+.++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334445566666666666666665554
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=82.47 E-value=3.4 Score=18.69 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=17.4
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLG 44 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 44 (256)
|+++.|..+|+++....+. +...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~--~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK--SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC--ChHHHHHHHH
Confidence 4566777777777765543 4455555543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.40 E-value=12 Score=25.07 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
.+.+.+.+.|++++. .-..++..+.+.++.-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 344556666666543 34456677777777788888888888877666677666667777776643
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=82.21 E-value=8.9 Score=23.28 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=35.2
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHhccCCH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGFCYANDW 171 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 171 (256)
..+.|...-..+...+...|++++|++.+-.+.+..... +...-..++..+...|.-
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 345566677777888888888888888888887664332 344445566665555553
|
|
| >cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH | Back alignment and domain information |
|---|
Probab=82.15 E-value=15 Score=25.81 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhhCCCCCC--HhhH-----HHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 52 YDTVLSLFKRLNSTGLFPD--LYTH-----SILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
.+.|+.+|+.+.+.-..|. .... ...+..|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 5689999999877643331 1122 23345789999999999999998874
|
Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.04 E-value=3.9 Score=26.94 Aligned_cols=67 Identities=9% Similarity=0.019 Sum_probs=48.9
Q ss_pred CCcccHHHHHHHHHccCCh---HHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 34 PPVSSFNIMLGCLAKNKHY---DTVLSLFKRLNSTGLF-PDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
++..+--.+..++.+..+. .+-+.+++.+.+...+ -.......|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6777777788888887664 4567788888763222 22344455666788999999999999999885
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=81.70 E-value=17 Score=26.28 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=11.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047518 198 DELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
....+.|+.++|.+.|..+...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcC
Confidence 3334555555555555555543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.55 E-value=3.4 Score=18.04 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
|..+...+...++++.|...|....+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44555566666666666666655543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.49 E-value=21 Score=27.13 Aligned_cols=127 Identities=12% Similarity=0.135 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCch-------HHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCcHHHHH
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNV-------VTYTSVIRGFCYANDWNEAKRLFIEMMD----QGVQPNVVTFN 194 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 194 (256)
+.+-..+.+++++|+..|.++...|+..+. .+...+...|...|+....-+......+ ..-+-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 345567889999999999999999886664 3455677888888887766665544332 11112234455
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHCCCCC-----CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 195 VIMDELCKN-GKMDEASSLLDLMIQHGVRP-----DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 195 ~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+++..+... ..++....+.....+..... ....-.-++..+.+.|.+.+|+.+.+.+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 555555433 34555555555554321111 11223456778889999999998766543
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.44 E-value=15 Score=25.99 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=30.7
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 132 KQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...+.+......+...+. ...|+..+|..++..+...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444444333221 23566667777777777777777777777666654
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.33 E-value=29 Score=28.58 Aligned_cols=121 Identities=9% Similarity=-0.000 Sum_probs=67.0
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
..|+.-.|-+-....++..+..|+. .......+...|.++.+...+...... +.....+..++++.....|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 4566666544333444444432443 333334456678888887777655432 2234556777777777888888888
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
..-.-|+...++. +.........--..|-++++...|+++...+
T Consensus 378 s~a~~~l~~eie~---------------~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIED---------------EEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccCC---------------hhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 7777776543321 1111111222234466777777777776554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=80.73 E-value=26 Score=27.75 Aligned_cols=129 Identities=10% Similarity=0.058 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCC--------
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD-------KNV-------- 151 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~-------- 151 (256)
+.++...|...+... |+.....++...+-.+.++-.+...+...|+.+.|.+++++..- ...
T Consensus 10 Y~~~q~~F~~~v~~~---Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~ 86 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSH---DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLT 86 (360)
T ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 445555555555543 44445555566677788888888999999999888888776531 111
Q ss_pred ----------CCchHHHHH---HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-hcCChhHHHHHHHHHH
Q 047518 152 ----------KPNVVTYTS---VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC-KNGKMDEASSLLDLMI 217 (256)
Q Consensus 152 ----------~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~ 217 (256)
.-|...|.+ .|....+.|.+..|+++.+-+......-|......+|+.|+ ++++++-..++.+...
T Consensus 87 ~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 87 SGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 112333333 34667899999999999999999876557777777888775 7778887888887765
Q ss_pred H
Q 047518 218 Q 218 (256)
Q Consensus 218 ~ 218 (256)
.
T Consensus 167 ~ 167 (360)
T PF04910_consen 167 A 167 (360)
T ss_pred h
Confidence 4
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=80.64 E-value=17 Score=26.99 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 191 VTFNVIMDELCKNGKMDEASSLLDLMIQ----HGV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
.....+..-|...|++++|.++|+.+.. .|+ .+...+...+..++.+.|+.++.+.+.=+|.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445677788999999999999998852 332 3445567778888899999999888766554
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=80.47 E-value=29 Score=28.09 Aligned_cols=133 Identities=16% Similarity=0.052 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhC---CC-CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh----cCCCHHHHH
Q 047518 53 DTVLSLFKRLNST---GL-FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----CKPDAITYN 124 (256)
Q Consensus 53 ~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~ 124 (256)
++...+++..... |+ ..+......++..+ .|+...+..+++.+...+...+......++.. .......+.
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~ 231 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHY 231 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHH
Confidence 4555556554322 33 44555555555432 67777788777776544222233333222221 112223344
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCCC
Q 047518 125 TIIDGLCK---QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-----WNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 125 ~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~ 187 (256)
.+++++.+ .++++.|+.++..|.+.|..|....-..++.++...|. ..-|...++.....|.+
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 45555555 47899999999999998877776655555555444432 33444555555556644
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=80.46 E-value=12 Score=23.61 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=53.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
-....++|..+.+.+...+.. ...+--+.+..+.+.|++++| +..-.. ...||...|-++. -.+.|-.+++..
T Consensus 18 G~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~ 90 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALC--AWKLGLASALES 90 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHH--HHHCT-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHH--HHhhccHHHHHH
Confidence 345688999999999887653 333444455667889999999 222222 2468888777664 458898899988
Q ss_pred HHHHHHHCC
Q 047518 212 LLDLMIQHG 220 (256)
Q Consensus 212 ~~~~~~~~~ 220 (256)
.+.++..+|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 888887665
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=80.06 E-value=12 Score=23.54 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=51.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
....++|..+.+-+...+. -....-.+-+..+.+.|++++| ++.- . ....||...|.+|.. .+.|-.+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~-~-~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLP-Q-CHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHH-T-TS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhc-c-cCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 4567888888888887753 2333444455678899999999 2222 2 224678777777644 588888888888
Q ss_pred HHHHHhcC
Q 047518 248 FVSMESMG 255 (256)
Q Consensus 248 ~~~m~~~g 255 (256)
+.++-.+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 88776554
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 256 | |||
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 5e-21 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 1e-09 |
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.0 bits (224), Expect = 5e-21
Identities = 28/232 (12%), Positives = 68/232 (29%), Gaps = 16/232 (6%)
Query: 30 HPSPPPVSSFNIMLGCL----AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
P S + L L D + + + L C
Sbjct: 82 CTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTD 141
Query: 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
++ +L K YN ++ G +QG + +
Sbjct: 142 QLPLAHHLLVVHHGQ-----------RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEA-KRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
+KD + P++++Y + ++ + +R +M +G++ + V++ E +
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+ + P + LL +L + ++++ C
Sbjct: 251 VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 1e-09
Identities = 16/176 (9%), Positives = 50/176 (28%), Gaps = 15/176 (8%)
Query: 16 PNEALCIFDYMLRM--HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
A + + +N ++ A+ + ++ + + GL PDL +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 74 HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
++ + C + + + + C + K A+ ++ +
Sbjct: 203 YAAALQCMGRQDQDA-------GTIERCLE------QMSQEGLKLQALFTAVLLSEEDRA 249
Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
+ ++ P V + ++R + +L + +
Sbjct: 250 TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.94 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.9 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.87 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.83 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.81 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.79 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.79 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.78 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.78 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.77 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.77 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.77 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.76 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.76 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.74 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.74 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.69 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.67 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.67 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.59 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.58 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.58 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.57 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.57 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.55 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.55 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.55 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.54 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.48 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.45 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.44 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.43 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.43 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.41 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.37 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.37 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.36 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.36 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.35 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.34 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.34 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.33 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.33 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.33 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.33 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.32 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.31 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.31 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.3 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.29 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.28 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.28 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.27 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.27 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.25 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.25 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.24 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.24 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.22 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.22 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.14 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.14 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.13 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.12 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.11 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.11 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.11 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.11 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.08 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.06 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.04 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.03 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.03 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.02 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.02 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.02 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.01 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.0 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.0 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.0 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.99 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.99 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.98 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.94 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.93 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.93 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.93 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.92 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.88 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.88 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.87 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.87 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.84 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.84 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.84 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.84 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.83 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.82 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.81 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.81 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.8 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.79 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.79 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.78 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.77 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.77 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.77 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.76 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.76 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.74 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.73 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.73 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.69 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.69 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.66 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.66 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.64 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.58 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.57 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.54 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.54 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.5 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.47 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.46 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.46 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.45 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.44 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.44 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.42 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.41 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.41 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.34 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.31 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.29 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.28 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.25 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.2 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.13 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.1 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.09 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.9 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.84 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.65 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.61 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.59 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.56 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.46 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.32 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.3 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.29 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.26 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 97.22 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.21 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.16 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.09 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.91 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.87 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.81 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.67 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.65 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.42 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.34 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.21 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.2 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 96.08 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.04 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.93 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.8 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 95.54 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.18 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 94.24 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.6 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 93.16 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.09 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 92.97 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.69 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.51 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.5 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 92.24 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.44 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.02 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.88 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.85 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.72 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.65 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.53 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.46 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.36 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.25 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.94 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.76 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.75 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.87 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.04 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 87.52 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 87.32 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.86 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 86.81 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.51 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 85.96 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.25 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.54 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.29 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 80.42 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=244.95 Aligned_cols=207 Identities=14% Similarity=0.200 Sum_probs=179.4
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC---------cc
Q 047518 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR---------VS 88 (256)
Q Consensus 18 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 88 (256)
.+..+.+++.+.+....+...++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345566667666554233456889999999999999999999999999999999999999999998765 46
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
.|.++|++|.+.|+. ||..+|++||.+|++.|++++|..+|++|.+.|+.||..||+.+|.+|++.
T Consensus 88 ~A~~lf~~M~~~G~~--------------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 88 RGFDIFKQMIVDKVV--------------PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp HHHHHHHHHHHTTCC--------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 799999999998765 566778899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=229.61 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=162.4
Q ss_pred HHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHH
Q 047518 53 DTVLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~ 131 (256)
..+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+. ||..+|+.||.+|+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~--------------pd~~tyn~Li~~c~ 72 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ--------------LSQYHYNVLLYVCS 72 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC--------------CCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------------CCHhHHHHHHHHHH
Confidence 4456677778777766554 46889999999999999999999999998765 55667788888988
Q ss_pred hcCC---------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 132 KQGF---------VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 132 ~~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
+.+. +++|.++|++|...|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++
T Consensus 73 ~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~ 152 (501)
T 4g26_A 73 LAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152 (501)
T ss_dssp TCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH
Confidence 7654 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|++.|+
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=177.28 Aligned_cols=238 Identities=10% Similarity=-0.013 Sum_probs=136.7
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
+.+.|++++|+++|+++.+.++. +..+|+.++.++.+.|++++|..+++.+.+.. +.+..+|..++..|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY--NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 44455555555555555554432 44445555555555555555555555554332 3345566666666666666666
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhh--------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIK--------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~--------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
|.++|+++.+.. +.+..++..+.. ..+.+..+|+.++.+|.+.|++++|..+|+++.+.
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666665531 112223332221 22345566666666666666666666666666554
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
... +..+|+.++..|.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 FQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 322 5566666666666666666666666666554 44555 5566666666666666666666666666543 33
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..+|..+..+|.+.|++++|.++++++.+
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 566666666666666666666666666654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-24 Score=174.37 Aligned_cols=222 Identities=9% Similarity=-0.021 Sum_probs=171.7
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
.+.+.|++++|..+|+++.+..+ .+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRHP--EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT--TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34566777777777777776554 366677777777777777777777777776643 235667777777777777777
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhh--------------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIK--------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~--------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
+|+++|+++.+.+ +.+..++..+.. ..+.+..+|+.++..|.+.|++++|..+|+++.+
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777777642 223344433322 3356789999999999999999999999999987
Q ss_pred C----CCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047518 149 K----NVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222 (256)
Q Consensus 149 ~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (256)
. +..|+ ..+|..+..+|.+.|++++|...++++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+.. +
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p 581 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-P 581 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-C
Confidence 6 66777 7899999999999999999999999999875 4578999999999999999999999999999863 4
Q ss_pred CCHHhHHHHHHHHH
Q 047518 223 PDAFTYNTLLDGFC 236 (256)
Q Consensus 223 ~~~~~~~~l~~~~~ 236 (256)
.+...+..+..+|.
T Consensus 582 ~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 582 NEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHh
Confidence 45667777666553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-20 Score=145.37 Aligned_cols=240 Identities=11% Similarity=0.081 Sum_probs=194.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
+..+...|++++|++.|+++.+..|. +...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|+
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYNPD--LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTT--CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34466778888888888888887654 56667778888888888888888888887763 3346778888888888888
Q ss_pred cchHHHHHHHHHhcCCCCch-hhHH--------------------hhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDV-VTFT--------------------SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~-~~~~--------------------~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (256)
+++|...|+++.+.. |+. ..+. ..+...+.+..++..+..+|.+.|++++|...|++
T Consensus 185 ~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887742 321 1111 11123345678899999999999999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047518 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225 (256)
Q Consensus 146 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 225 (256)
+.+.+.. +..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+.
T Consensus 263 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~ 339 (388)
T 1w3b_A 263 AIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFA 339 (388)
T ss_dssp HHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCH
T ss_pred HHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcH
Confidence 9987543 67789999999999999999999999999874 567889999999999999999999999999876 25568
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 226 FTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.++..+..+|.+.|++++|.+.++++.+.
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 340 AAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-20 Score=144.13 Aligned_cols=237 Identities=11% Similarity=0.062 Sum_probs=138.1
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcch
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (256)
+...|++++|...++...+..|. +..+|..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 34456666666666666665543 55666666666666677777777666666542 2234456666666666666666
Q ss_pred HHHHHHHHHhcCCCCchhhHH---------------------hhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 90 GFVVLGRILRSCFTPDVVTFT---------------------SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~---------------------~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
|...|+++.+. .|+..... ..+...+.+..+|..+...+...|++++|...|+++.+
T Consensus 120 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 120 AVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666553 22221111 11112233455566666666666666666666665544
Q ss_pred CCCC---------------------------------CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 149 KNVK---------------------------------PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 149 ~~~~---------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
.++. .+..++..+...+...|++++|...++++.+.. +.+..+|..
T Consensus 198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 276 (388)
T 1w3b_A 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCN 276 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 3221 134455556666666666666666666666543 223455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..++.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666666666666666542 44566666666666666777777666666654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-20 Score=144.16 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=105.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+.+.|++++|+.+|+++.+..|. +..+|..+..++...|++++|...|+++.+.+ +.+..++..+..+|...|+
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 44566778888888888888876554 67778888888888888888888888887764 3356677888888888888
Q ss_pred cchHHHHHHHHHhcCCCCch----hhHHhh--------------------------------hhhcCCCHHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDV----VTFTSL--------------------------------IKVCKPDAITYNTIIDGL 130 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~----~~~~~l--------------------------------l~~~~~~~~~~~~l~~~~ 130 (256)
+++|..+|+++.+. .|+. ..+..+ +...+.+..++..+..+|
T Consensus 110 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (450)
T 2y4t_A 110 LDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECF 187 (450)
T ss_dssp HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 88888888888764 2322 222111 112233444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.+.|++++|...|+.+..... .+..++..+...|...|++++|...++++..
T Consensus 188 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 188 IKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555544321 2344444455555555555555555554443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=145.40 Aligned_cols=237 Identities=12% Similarity=0.079 Sum_probs=189.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+.+.|++++|+..|+++.+..|. +..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..+|...|+
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcccc
Confidence 45567889999999999999998775 78899999999999999999999999998864 3467899999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGF 165 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 165 (256)
+++|...++++.+.. |+...... ........+..+...+...|++++|...|+++...... ++..++..+...+
T Consensus 149 ~~~A~~~~~~al~~~--p~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 149 QQDACEALKNWIKQN--PKYKYLVK---NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHHHHHHHHHHHHHC--HHHHCC----------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--ccchHHHh---hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 999999999998742 22111000 00012334556788999999999999999999887533 2578899999999
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 245 (256)
...|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999874 4468899999999999999999999999998863 446889999999999999999999
Q ss_pred HHHHHHHh
Q 047518 246 ELFVSMES 253 (256)
Q Consensus 246 ~~~~~m~~ 253 (256)
..+++..+
T Consensus 302 ~~~~~al~ 309 (365)
T 4eqf_A 302 SNFLTALS 309 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-22 Score=164.65 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKD---KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
-..+|++||++|++.|++++|..+|.+|.+ .|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 196 IMDELCKNGKM-DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 196 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999985 78999999999999999999999888766554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=138.26 Aligned_cols=240 Identities=12% Similarity=0.065 Sum_probs=189.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH---hhHHHH------
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTHSIL------ 77 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------ 77 (256)
+..+...|++++|+..|+++.+.+|. +..++..+...+.+.|++++|...|+++.+.. +.+. ..+..+
T Consensus 67 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 67 ATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH
Confidence 44566788999999999999887765 67788889999999999999999999988764 2233 444444
Q ss_pred ------HHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhh--------------------hhhcCCCHHHHHHHHHHHH
Q 047518 78 ------INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL--------------------IKVCKPDAITYNTIIDGLC 131 (256)
Q Consensus 78 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------l~~~~~~~~~~~~l~~~~~ 131 (256)
...+...|++++|+.+++++.+.. +.+..++..+ +...+.+..+|..+..+|.
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444778888888888888887642 1122222222 2234567899999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHH------------HHHHhccCCHHHHHHHHHHHHHcCCCCc-----HHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSV------------IRGFCYANDWNEAKRLFIEMMDQGVQPN-----VVTFN 194 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~ 194 (256)
..|++++|...|+.+...... +...+..+ ...+...|++++|...++++.+.. |+ ...+.
T Consensus 223 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~ 299 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKE 299 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHH
Confidence 999999999999999876432 44444444 788999999999999999999863 44 45788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+..++.+.|++++|...++.+.+.. +.+...|..+..+|...|++++|...++++.+.
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 89999999999999999999998753 457889999999999999999999999998764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-19 Score=137.37 Aligned_cols=239 Identities=12% Similarity=0.047 Sum_probs=192.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|++++|+..|+++.+..|. +..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 147 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 147 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 44567789999999999999987664 77889999999999999999999999998875 4477899999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchh----------------------------------hHHhhhhhcCC--CHHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVV----------------------------------TFTSLIKVCKP--DAITYNTIIDGL 130 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~----------------------------------~~~~ll~~~~~--~~~~~~~l~~~~ 130 (256)
+++|...++++.+..-..... .+...+...+. +..++..+...|
T Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 227 (368)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence 999999999998853221111 11111122233 578889999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHH
Q 047518 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 210 (256)
...|++++|...|+++..... .+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.
T Consensus 228 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 305 (368)
T 1fch_A 228 NLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAV 305 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999887643 367788899999999999999999999998764 346778899999999999999999
Q ss_pred HHHHHHHHCCC----------CCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 211 SLLDLMIQHGV----------RPDAFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 211 ~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
..|+++.+... +....+|..+..+|...|++++|..++++
T Consensus 306 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 306 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99998875321 11267899999999999999999888753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-19 Score=133.82 Aligned_cols=241 Identities=13% Similarity=0.059 Sum_probs=160.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG- 85 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 85 (256)
+..+...|++++|+++|+++.+..|. +...+..++..+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhh
Confidence 34456679999999999999887765 56678788888899999999999999988764 345678888888899999
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhh--------------------hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (256)
++++|...++++.+..-. +...+..+. ...+.+...+..+...|...|++++|...+++
T Consensus 106 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 899999999998875311 111111111 12233445555566666666666666666666
Q ss_pred HHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 146 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
..+.... +..++..+...+...|++++|...+++..+.. .+.+..++..+..++...|++++|...+++..
T Consensus 185 al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6655332 45566666666666677777776666666431 02234566666666667777777777776666
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+.. +.+...+..+..+|.+.|++++|.+.+++..+
T Consensus 264 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 264 VLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred hhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 543 33555666666666667777777766665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-19 Score=134.27 Aligned_cols=240 Identities=12% Similarity=0.030 Sum_probs=195.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|++++|+.+|+++.+..|. +..++..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 44567789999999999999998765 77889999999999999999999999998874 4467889999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchh----------------------------------hHHhhhhhcCCCHHHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVV----------------------------------TFTSLIKVCKPDAITYNTIIDGLCK 132 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~----------------------------------~~~~ll~~~~~~~~~~~~l~~~~~~ 132 (256)
+++|...++++.+..-..... .+...+...+.+..++..+...|..
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 999999999998752111100 1112222345578889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 047518 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212 (256)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 212 (256)
.|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.
T Consensus 185 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999887643 367788899999999999999999999998864 34677889999999999999999999
Q ss_pred HHHHHHCCCCC-----------CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 213 LDLMIQHGVRP-----------DAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 213 ~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
++++.+..... +...+..+..++.+.|++++|..++++.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99887642111 4678889999999999999999887643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-18 Score=128.65 Aligned_cols=228 Identities=11% Similarity=0.029 Sum_probs=175.6
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC-ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
.+...|++++|...++++.+..|. +...|..+...+...| ++++|...|++..+.. +.+...|..+..++...|++
T Consensus 65 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 65 TLVELNKANELFYLSHKLVDLYPS--NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT--STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCH
Confidence 345678888888888888887664 6667888888888888 8888888888887764 33566788888888888888
Q ss_pred chHHHHHHHHHhcCCCCchhhH--------------------HhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 88 SHGFVVLGRILRSCFTPDVVTF--------------------TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~--------------------~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
++|...++++.+..-.. ...+ ...+...+.+..++..+...+...|++++|...+++..
T Consensus 142 ~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGC-HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHHTTTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88888888887753221 1111 11112345678899999999999999999999999987
Q ss_pred hCC--------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 148 DKN--------VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 148 ~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+.. .+....++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 642 13346788999999999999999999999999874 346788999999999999999999999998876
Q ss_pred CCCCCHHhHHHHHHHH-HhcCChh
Q 047518 220 GVRPDAFTYNTLLDGF-CLTGRVN 242 (256)
Q Consensus 220 ~~~~~~~~~~~l~~~~-~~~g~~~ 242 (256)
. +.+...+..+..++ ...|+.+
T Consensus 300 ~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 300 R-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp C-SCCHHHHHHHHHHHHTTTTC--
T ss_pred C-CCchHHHHHHHHHHHHHhCchh
Confidence 3 44677888888888 4556554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-21 Score=157.81 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=122.7
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
..||+++|++|++.|++++|..+|.+|.+.+ -.++.||+.+||+||.+|++.|++++|.++|++|.+.|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~-----------~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR-----------QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH-----------HHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----------hcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4589999999999999999999998886531 01456788899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----
Q 047518 151 VKPNVVTYTSVIRGFCYANDW-NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD----- 224 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----- 224 (256)
+.||..||+++|.++++.|+. ++|.+++++|.+.|+.||..+|+.++..+.+.+ +++..+++ ..+..|+
T Consensus 196 ~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~ 270 (1134)
T 3spa_A 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPP 270 (1134)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCC
T ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcc
Confidence 999999999999999999984 789999999999999999999999987665543 33333333 2233333
Q ss_pred -HHhHHHHHHHHHhcC
Q 047518 225 -AFTYNTLLDGFCLTG 239 (256)
Q Consensus 225 -~~~~~~l~~~~~~~g 239 (256)
..+...|.+.|.+.+
T Consensus 271 ~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 271 PVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCTTTHHHHCCCS
T ss_pred cccchHHHHHHHccCC
Confidence 334444555555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-18 Score=122.51 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=163.0
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++.++..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 69 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART------------ 69 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 677889999999999999999999999998874 4467889999999999999999999999998852
Q ss_pred hhcCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 114 KVCKPDAITYNTIIDGLCKQ-----------GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
+.+...+..+..++... |++++|+..|++..+..+. +...+..+...+...|++++|+..+++..
T Consensus 70 ---P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 70 ---PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34667888899999999 9999999999999887543 67788899999999999999999999999
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 183 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+.. .+...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++.-
T Consensus 146 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 146 ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 887 688899999999999999999999999998863 4577889999999999999999999988754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-17 Score=127.02 Aligned_cols=227 Identities=10% Similarity=0.019 Sum_probs=165.6
Q ss_pred CCCCcCChhhHHH-HHHHHHHhCCCCC--CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 9 GDITTITPNEALC-IFDYMLRMHPSPP--PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 9 ~~~~~g~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.+.-.|++++|++ .|++.....+..| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 5566788888888 8887665544323 46778899999999999999999999999875 446788999999999999
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-------------- 151 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 151 (256)
++++|...++++.+.. +.+..++..+...|...|++++|...++.+.....
T Consensus 113 ~~~~A~~~~~~al~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK---------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred CHHHHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh
Confidence 9999999999998852 23455666667777777777777777666554321
Q ss_pred ---------------------------------CC---chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 152 ---------------------------------KP---NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 152 ---------------------------------~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
.| +..++..+...+...|++++|...++++.+.. +.+..++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 256 (368)
T 1fch_A 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK 256 (368)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 11 35677777888888888888888888887763 335677888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..++...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...+++..+
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888887653 44677788888888888888888888887764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-18 Score=129.18 Aligned_cols=239 Identities=11% Similarity=0.040 Sum_probs=191.1
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|..+...|++++|+..|+++.+..|. +..++..+...+...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcC
Confidence 355667899999999999999998775 77889999999999999999999999998764 336688999999999999
Q ss_pred CcchHHHHHHHHHhcCCCC---c-hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTP---D-VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~---~-~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
++++|...++++.+. .| + ...+..+.. ......+..+...+...|++++|...++.+.+... .+...+..+
T Consensus 86 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 160 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK--ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELR 160 (359)
T ss_dssp CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred ChHHHHHHHHHHHhc--CCcccChHHHHHHHHH--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 999999999999885 23 1 111111100 00011223346889999999999999999988754 377889999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH------------
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN------------ 229 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------ 229 (256)
...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 4577899999999999999999999999998753 33444333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 230 TLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+...+.+.|++++|...+++..+.
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2366788999999999999987753
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=125.54 Aligned_cols=219 Identities=15% Similarity=0.113 Sum_probs=183.8
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCC--CCC----HhhHHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL--FPD----LYTHSILIN 79 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~~ 79 (256)
.|..+...|++++|+..|++..+.. . +..+|..+...+...|++++|...++...+... .++ ..++..+..
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~-~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH-K--DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-C--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh-c--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 4556778899999999999999877 4 678899999999999999999999999876531 112 578899999
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 047518 80 CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159 (256)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (256)
++...|++++|...++++.+.. |+ ...+.+.|++++|...++.+..... .+...+.
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~~----------------~~-------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 143 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTEH----------------RT-------ADILTKLRNAEKELKKAEAEAYVNP-EKAEEAR 143 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----------------CC-------HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC----------------ch-------hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHH
Confidence 9999999999999999998852 22 2346667889999999999888643 2567788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 047518 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (256)
.+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...++...+.. +.+...+..+..++.+.|
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999874 3467889999999999999999999999998763 456888999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 047518 240 RVNHAKELFVSMES 253 (256)
Q Consensus 240 ~~~~a~~~~~~m~~ 253 (256)
++++|.+.+++..+
T Consensus 222 ~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 222 EYASALETLDAART 235 (258)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=123.59 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=187.7
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHH
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTHSILINCFC 82 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 82 (256)
..|..+...|++++|+..|++..+..|. +...+..+...+...|++++|+..+++..+.+..|+ ...|..+..++.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN--SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC--CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3455677899999999999999997765 667899999999999999999999999988432222 234889999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
..|++++|+..++++.+.. +.+..++..+...|...|++++|...|++..+... .+..++..+.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~ 149 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD---------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELG 149 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS---------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC---------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHH
Confidence 9999999999999998842 34567889999999999999999999999988743 3666777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHhHHHHH
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK---MDEASSLLDLMIQHG-VRPD------AFTYNTLL 232 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~ 232 (256)
..+...+++++|...++++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 34445569999999999999874 3346778888888888888 888999998887531 1133 25788899
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 047518 233 DGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..|...|++++|.+.+++..+.
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-18 Score=131.64 Aligned_cols=225 Identities=9% Similarity=0.000 Sum_probs=180.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-H----------hhHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-L----------YTHS 75 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----------~~~~ 75 (256)
|..+...|++++|+..|+++.+..|. +..+|..+...+...|++++|...++++.+.. |+ . ..+.
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~ 181 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQPN--NLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTR 181 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHH
Confidence 44567789999999999999998765 78889999999999999999999999998753 32 1 2233
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 047518 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155 (256)
Q Consensus 76 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (256)
.+...+...|++++|..+++++.+.. |+ ..+..++..+...|...|++++|...|++..+... .+.
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~--p~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~ 247 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQN--GD-----------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDY 247 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHS--CS-----------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhC--cC-----------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 45788999999999999999998852 11 12577889999999999999999999999988754 368
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CC--------CC
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG---VR--------PD 224 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~--------~~ 224 (256)
.+|..+..+|...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+.. .. .+
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 326 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS 326 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhH
Confidence 899999999999999999999999999874 3458889999999999999999999999987531 01 13
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHH
Q 047518 225 AFTYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 225 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
...|..+..++...|+.+.+.++.++
T Consensus 327 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 327 GNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 56789999999999999998887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-17 Score=122.06 Aligned_cols=217 Identities=14% Similarity=0.112 Sum_probs=148.2
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCc
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTHSILINCFCKMGRV 87 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 87 (256)
.|+..|+++.|+..++.. .+|+..++..+...+...++.+.|++.++++...+..| +...+..+..++...|++
T Consensus 43 ~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 43 AYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 344455555555444321 12344455555555555555555555555555444323 233444444555555555
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH---HHHHHH
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY---TSVIRG 164 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~ 164 (256)
++|++.+++ +.+...+..++..|.+.|++++|...|+.+.+.. |+.... ...+..
T Consensus 118 ~~Al~~l~~--------------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 118 DAALRTLHQ--------------------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSL 175 (291)
T ss_dssp HHHHHHHTT--------------------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHH
Confidence 555555543 2466788888999999999999999999998874 343211 223344
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH-
Q 047518 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH- 243 (256)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~- 243 (256)
+...|++++|..+++++.+.. +.+...++.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+.++
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHH
Confidence 445689999999999999873 5678899999999999999999999999988763 4578889999999999999876
Q ss_pred HHHHHHHHHhc
Q 047518 244 AKELFVSMESM 254 (256)
Q Consensus 244 a~~~~~~m~~~ 254 (256)
+.++++++.+.
T Consensus 254 a~~~~~~~~~~ 264 (291)
T 3mkr_A 254 TNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 56888887653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-16 Score=120.63 Aligned_cols=242 Identities=11% Similarity=0.027 Sum_probs=178.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCC--CCHhhHHHH-------
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF--PDLYTHSIL------- 77 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------- 77 (256)
|..+...|++++|+..|+++.+..|. +...|..+...+...|++++|...++.+.+.... .+...+..+
T Consensus 44 a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 44 ATVFLAMGKSKAALPDLTKVIALKMD--FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH
Confidence 34456789999999999999998765 6788999999999999999999999999887420 244455544
Q ss_pred -----HHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhh--------------------hhhcCCCHHHHHHHHHHHHh
Q 047518 78 -----INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL--------------------IKVCKPDAITYNTIIDGLCK 132 (256)
Q Consensus 78 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------l~~~~~~~~~~~~l~~~~~~ 132 (256)
...+...|++++|...++++.+..- .+...+..+ +...+.+..++..+...+..
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5788899999999999999987531 122222111 11335567778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHH------------HHHHHHhccCCHHHHHHHHHHHHHcCCCCcH----HHHHHH
Q 047518 133 QGFVDKAKELFLKMKDKNVKPNVVTYT------------SVIRGFCYANDWNEAKRLFIEMMDQGVQPNV----VTFNVI 196 (256)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l 196 (256)
.|++++|...|+...+.... +...+. .+...+...|++++|...++++.+.... +. ..+..+
T Consensus 201 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l 278 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERI 278 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 88888888888887765432 333322 2255577888888888888888876322 22 234557
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..++...|++++|...++...+.. +.+..++..+..+|...|++++|.+.+++..+.
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 778888999999999998888752 447788888888899999999999998887764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-18 Score=136.61 Aligned_cols=94 Identities=9% Similarity=0.080 Sum_probs=81.7
Q ss_pred ccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 4 KSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 4 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
...|..+.+.|++++|+..|+++.... |+..+|..+..++.+.|++++|...++++.+.+ +.+..+|..+..++..
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 345666788999999999999999876 477889999999999999999999999998875 3466789999999999
Q ss_pred cCCcchHHHHHHHHHhcC
Q 047518 84 MGRVSHGFVVLGRILRSC 101 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~ 101 (256)
.|++++|...|+++.+.+
T Consensus 86 ~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS
T ss_pred HhhHHHHHHHHHHHHhcC
Confidence 999999999999987754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-16 Score=114.74 Aligned_cols=201 Identities=12% Similarity=0.014 Sum_probs=172.0
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 5668888899999999999999999998764 3467788999999999999999999999988752
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.+...+..+...|...|++++|...++++...+..| +...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 102 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 179 (252)
T 2ho1_A 102 -SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVAL 179 (252)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred -cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHH
Confidence 3356778888999999999999999999998732333 56778888899999999999999999998874 34678889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999998763 557778888999999999999999999988764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-17 Score=123.51 Aligned_cols=217 Identities=12% Similarity=0.082 Sum_probs=175.1
Q ss_pred CCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 047518 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 90 (256)
+-.|+++.|+..++.+....|. ........+..+|...|+++.|+..++. . -+|+..++..+...+...++.++|
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4579999999998876543332 1133556678999999999999987654 2 356778899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC
Q 047518 91 FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170 (256)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 170 (256)
++.++++...+..|+ +...+..+..++...|++++|+..+++ +.+...+..+...+.+.|+
T Consensus 85 ~~~l~~ll~~~~~P~-------------~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 85 VAELDREMSRSVDVT-------------NTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HHHHHHHHHSCCCCS-------------CHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcccCCC-------------CHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Confidence 999999988654443 455677788999999999999999987 4578889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047518 171 WNEAKRLFIEMMDQGVQPNVVTF---NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247 (256)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (256)
+++|...++++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.
T Consensus 146 ~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999874 443211 22334445568999999999999987 467889999999999999999999999
Q ss_pred HHHHHhc
Q 047518 248 FVSMESM 254 (256)
Q Consensus 248 ~~~m~~~ 254 (256)
+++..+.
T Consensus 223 l~~al~~ 229 (291)
T 3mkr_A 223 LQEALDK 229 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9997754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-17 Score=118.57 Aligned_cols=193 Identities=10% Similarity=0.003 Sum_probs=90.3
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|..+...|++++|+..|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp -------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhc
Confidence 344455555555555555555543332 44445555555555555555555555554432 223445555555555555
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 106 ~~~~A~~~~~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAG---------------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCL 169 (243)
T ss_dssp CHHHHHHHHHHHHHHT---------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 5555555555554421 12333444455555555555555555555544322 1344455555555
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555555555555442 22344555555555555555555555555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-17 Score=130.34 Aligned_cols=227 Identities=12% Similarity=0.026 Sum_probs=194.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|++++|...|+++.+..+. ..++..+...+...|++++|...++.+.+.. +.+..++..+..++...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR---VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 34566789999999999999987653 7789999999999999999999999998874 3467789999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+.+... .+..++..+...+.
T Consensus 320 ~~~A~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD---------------PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILT 383 (514)
T ss_dssp TTHHHHHHHHHHHTC---------------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHH
Confidence 999999999998752 23556788899999999999999999999987643 36678889999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 167 YANDWNEAKRLFIEMMDQGVQ-PN----VVTFNVIMDELCK---NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
..|++++|...++++.+.... ++ ...+..+..++.. .|++++|...++.+.+.. +.+..++..+..+|.+.
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 999999999999998865211 11 3488899999999 999999999999998763 45678899999999999
Q ss_pred CChhHHHHHHHHHHhc
Q 047518 239 GRVNHAKELFVSMESM 254 (256)
Q Consensus 239 g~~~~a~~~~~~m~~~ 254 (256)
|++++|...+++..+.
T Consensus 463 g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 463 EDIDEAITLFEESADL 478 (514)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999988764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-17 Score=132.21 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=151.2
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
..|..+.+.|++++|+..|+++.+..|. +..+|..+..++.+.|++++|++.++++.+.. +.+..++..+..++...
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 3456678899999999999999998875 78889999999999999999999999998875 44678899999999999
Q ss_pred CCcchHHHHHHHHHhcCC------------------------------------CCchh---------------------
Q 047518 85 GRVSHGFVVLGRILRSCF------------------------------------TPDVV--------------------- 107 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~------------------------------------~~~~~--------------------- 107 (256)
|++++|...|+.+....- .|+..
T Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 999999998853311100 00000
Q ss_pred -------------------------------------hHHhhhhhcCCC-------HHHHHHHHHHHHhcCCHHHHHHHH
Q 047518 108 -------------------------------------TFTSLIKVCKPD-------AITYNTIIDGLCKQGFVDKAKELF 143 (256)
Q Consensus 108 -------------------------------------~~~~ll~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~ 143 (256)
.+..++...+.+ ..++..+...+...|++++|...|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 000011111112 123444555666666666666666
Q ss_pred HHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047518 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (256)
+...... |+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.
T Consensus 267 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 342 (537)
T 3fp2_A 267 QESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PE 342 (537)
T ss_dssp HHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC
Confidence 6666543 234555556666666666666666666665543 2244555555555666666666666665555432 22
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+...+..+..+|...|++++|.++++++.+
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=115.58 Aligned_cols=202 Identities=11% Similarity=0.058 Sum_probs=158.5
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.....|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------ 87 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD------------ 87 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------
Confidence 456678888999999999999999999998864 3467889999999999999999999999998752
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
+.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+
T Consensus 88 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 162 (243)
T 2q7f_A 88 ---SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEAR 162 (243)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ---CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHH
Confidence 34567888899999999999999999999988754 367788899999999999999999999999874 3467889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|.+.+++..+.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999998763 456888999999999999999999999998764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-15 Score=111.69 Aligned_cols=216 Identities=13% Similarity=-0.034 Sum_probs=187.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|..+...|++++|+..|++..+ + .+..++..+...+.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~~--~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 13 GAKSYKEKDFTQAKKYFEKACD--L--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 3445677899999999999988 2 355778889999999 999999999999999875 6788889999999
Q ss_pred h----cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCc
Q 047518 83 K----MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK----QGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 83 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
. .+++++|+.+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~ 145 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDLK-----------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D 145 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCCCcccCHHHHHHHHHHHHHcC-----------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---c
Confidence 9 999999999999998852 45677888899999 999999999999999876 5
Q ss_pred hHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHH
Q 047518 155 VVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 155 ~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 5677778888877 899999999999999874 45778888899999 999999999999999874 367
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 047518 227 TYNTLLDGFCL----TGRVNHAKELFVSMESMG 255 (256)
Q Consensus 227 ~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 255 (256)
.+..+...|.. .+++++|.+++++..+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 78888899998 999999999999988765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-17 Score=119.36 Aligned_cols=229 Identities=11% Similarity=-0.053 Sum_probs=181.6
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCC--CCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
.+......|++++|+..|+++.+..+. +.+..+|..+...+...|++++|...|+++.+.. +.+..+|..+..++..
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH
Confidence 455667789999999999999886432 1246778899999999999999999999998874 3467899999999999
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (256)
.|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+.. |+.......+.
T Consensus 90 ~~~~~~A~~~~~~al~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 152 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELD---------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLY 152 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC---------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC---------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 999999999999998852 3356788899999999999999999999998864 34444444555
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCC
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR---PDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 240 (256)
.+...|++++|...++...... +++...+ .++..+...++.++|...+....+.... .+..++..+..+|.+.|+
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 153 LAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 5677799999999998888763 3344444 3666777888888899888887654211 014678888899999999
Q ss_pred hhHHHHHHHHHHhc
Q 047518 241 VNHAKELFVSMESM 254 (256)
Q Consensus 241 ~~~a~~~~~~m~~~ 254 (256)
+++|...+++..+.
T Consensus 231 ~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 231 LDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-17 Score=116.64 Aligned_cols=190 Identities=16% Similarity=0.054 Sum_probs=154.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc--
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM-- 84 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 84 (256)
|..+.+.|++++|+..|++..+..|. +...+..+...+.+.|++++|+..+++..+.. +.+...+..+..++...
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 88 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKENPQ--DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYR 88 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhh
Confidence 44567889999999999999997765 78889999999999999999999999998874 34677899999999999
Q ss_pred ---------CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 047518 85 ---------GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155 (256)
Q Consensus 85 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (256)
|++++|+..+++..+.. +.+...+..+..++...|++++|+..|++..+.. .+.
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~al~~~---------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 89 QAEDRERGKGYLEQALSVLKDAERVN---------------PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred hhhhhcccccCHHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 99999999999998851 3456788899999999999999999999998887 588
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
..+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 889999999999999999999999999874 3467888899999999999999999998764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-16 Score=110.20 Aligned_cols=202 Identities=8% Similarity=-0.047 Sum_probs=153.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|..+++++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 45667788888888888888888888887653 3356778888888888888888888888887641
Q ss_pred hcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 192 (256)
+.+..++..+...+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...
T Consensus 73 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 149 (225)
T 2vq2_A 73 --PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPA 149 (225)
T ss_dssp --TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred --CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchH
Confidence 23556777788888888 88888888888887732222 35677778888888888888888888888763 335677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..+..++...|++++|...++.+.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 150 FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888888888888888887653114667777777778888888888888887764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-16 Score=113.24 Aligned_cols=195 Identities=11% Similarity=0.032 Sum_probs=167.9
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|++++|+..|+++....+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEIDPS--SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhH
Confidence 34566789999999999999987764 77889999999999999999999999998764 3467889999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|..+++++.+.+..| .+...+..+...+...|++++|...+++..+.... +...+..+...+.
T Consensus 121 ~~~A~~~~~~~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 186 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYP-------------ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHHTTCTTCT-------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCc-------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHH
Confidence 999999999998732222 24557788899999999999999999999886533 6788899999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+.
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999998864 456778888999999999999999999999875
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-16 Score=120.55 Aligned_cols=222 Identities=11% Similarity=0.027 Sum_probs=188.6
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC-hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
+...|++++|+..|+++++..|. +..+|+.+...+...|+ +++|+..|+++.+.. +-+...|..+..++...|+++
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHH
Confidence 44568999999999999998875 88899999999999997 999999999999875 336789999999999999999
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc-
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY- 167 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 167 (256)
+|+..|+++++. -+.+..+|..+..++.+.|++++|+..|+++.+.... +...|+.+..++..
T Consensus 184 eAl~~~~kal~l---------------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 184 QELEFIADILNQ---------------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 247 (382)
T ss_dssp THHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---------------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 999999999985 2457788999999999999999999999999988654 77889999999988
Q ss_pred cCCHHHH-----HHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-
Q 047518 168 ANDWNEA-----KRLFIEMMDQGVQPNVVTFNVIMDELCKNG--KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG- 239 (256)
Q Consensus 168 ~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 239 (256)
.|..++| +..+++.+... +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhc
Confidence 5665777 58888888764 336778999888898888 689999999888 43 3557788899999998874
Q ss_pred --------ChhHHHHHHHHH-Hh
Q 047518 240 --------RVNHAKELFVSM-ES 253 (256)
Q Consensus 240 --------~~~~a~~~~~~m-~~ 253 (256)
..++|+++++++ .+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHH
Confidence 258999999998 54
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-15 Score=108.84 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=167.1
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-C
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM-G 85 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 85 (256)
|..+...|++++|+..|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+... |
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcC
Confidence 44567789999999999999997764 67789999999999999999999999998764 34677899999999999 9
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
++++|...++++.+.+..| .+...+..+..++...|++++|...+.++.+.... +...+..+...+
T Consensus 92 ~~~~A~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 157 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYP-------------TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTK 157 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCS-------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCcCCc-------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHH
Confidence 9999999999998832222 23567888899999999999999999999876533 578889999999
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
...|++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999988743256777888888889999999999999998764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=123.54 Aligned_cols=226 Identities=13% Similarity=0.035 Sum_probs=189.3
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (256)
..+...|++++|+..|++..+..| +..+|..+...+...|+++.|...++.+.+.. +.+..+|..+...+...|++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHP---TPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC---CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 445678999999999999998764 46788999999999999999999999998764 34678899999999999999
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (256)
++|...++++.+.. +.+...+..+..+|...|++++|...++.+.+... .+...+..+...+..
T Consensus 327 ~~A~~~~~~a~~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN---------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHHHHHHC---------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 99999999998852 23456788899999999999999999999988753 367788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047518 168 ANDWNEAKRLFIEMMDQGV-----QPNVVTFNVIMDELCKN----------GKMDEASSLLDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 232 (256)
.|++++|...++++.+... ......+.....++... |++++|...|+...+.. +.+...+..+.
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 469 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLA 469 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 9999999999999886421 11222344555677777 99999999999998763 45778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 047518 233 DGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+|.+.|++++|.+.+++..+.
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999988753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-14 Score=108.81 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=178.4
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-------cCCh-------HHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-------NKHY-------DTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
++|..+|++.....|. +...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 7899999999997765 77889888887763 5886 899999999988311335668999999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI-TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
+.|++++|..+|+++++. .| .+.. +|..++..+.+.|++++|..+|++..+... ++...|...
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~ 174 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--ED-------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTA 174 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SS-------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cc-------------cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 999999999999999984 22 2333 788899999999999999999999998753 345555544
Q ss_pred HHHH-hccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHhHHHHHHHHHh
Q 047518 162 IRGF-CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRP--DAFTYNTLLDGFCL 237 (256)
Q Consensus 162 i~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~ 237 (256)
.... ...|++++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4332 23799999999999998763 3467889999999999999999999999999863 454 46788899999999
Q ss_pred cCChhHHHHHHHHHHhc
Q 047518 238 TGRVNHAKELFVSMESM 254 (256)
Q Consensus 238 ~g~~~~a~~~~~~m~~~ 254 (256)
.|+.++|..+++++.+.
T Consensus 254 ~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 254 IGDLASILKVEKRRFTA 270 (308)
T ss_dssp HSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=125.36 Aligned_cols=207 Identities=9% Similarity=0.022 Sum_probs=85.2
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4566888888888871 224788888888888888888888854 246678888888888888888888
Q ss_pred HHHHHHHhcCCCCchhhHHhhhh--------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIK--------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (256)
.+++...+. .+++.+...++. .-.|+..+|..+...|...|.+++|...|..+ ..
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp -----------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 877766664 222333322222 12467779999999999999999999999977 37
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 158 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHH
Confidence 899999999999999999999988 2778999999999999999999665543 23344556678899999
Q ss_pred cCChhHHHHHHHHHHh
Q 047518 238 TGRVNHAKELFVSMES 253 (256)
Q Consensus 238 ~g~~~~a~~~~~~m~~ 253 (256)
.|++++|..+++....
T Consensus 220 ~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 220 RGYFEELITMLEAALG 235 (449)
T ss_dssp TTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999987653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-16 Score=122.75 Aligned_cols=216 Identities=9% Similarity=-0.054 Sum_probs=182.4
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCCh-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHY-DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 93 (256)
.+++++..++......+ .+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|...
T Consensus 83 ~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35667777776655443 4778899999999999999 99999999998874 33578999999999999999999999
Q ss_pred HHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 047518 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ---------GFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164 (256)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (256)
|+++.+. .|+...+..+..+|... |++++|...|++..+.... +...|..+..+
T Consensus 160 ~~~al~~----------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 222 (474)
T 4abn_A 160 FSGALTH----------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNA 222 (474)
T ss_dssp HHHHHTT----------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHhh----------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 9999985 24456788889999999 9999999999999887543 67889999999
Q ss_pred Hhcc--------CCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 165 FCYA--------NDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 165 ~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
|... |++++|...+++..+.... .+...|..+..+|...|++++|...|++..+.. +.+...+..+..+
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~ 301 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9988 9999999999999986321 378899999999999999999999999998763 4467788999999
Q ss_pred HHhcCChhHHHHHHHHH
Q 047518 235 FCLTGRVNHAKELFVSM 251 (256)
Q Consensus 235 ~~~~g~~~~a~~~~~~m 251 (256)
+...|++++|++.+.++
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999998765443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-14 Score=107.23 Aligned_cols=201 Identities=7% Similarity=-0.060 Sum_probs=151.2
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------------- 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------
Confidence 45667888999999999999999999998764 3467788999999999999999999999998852
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------------------------------------
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV------------------------------------------- 151 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------- 151 (256)
+.+..++..+...|...|++++|...++++.....
T Consensus 86 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 86 --PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 22344555555666666666666665555443211
Q ss_pred -----CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 152 -----KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 152 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..
T Consensus 164 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 241 (327)
T 3cv0_A 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVR 241 (327)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 1245667777777888888888888888887763 3456778888888888888888888888877653 44677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+..+..+|...|++++|.+.+++..+
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 788888888888888888888877654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-14 Score=98.51 Aligned_cols=167 Identities=10% Similarity=-0.008 Sum_probs=145.3
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+..+|..+..+|...|++++|+..|++.++.. +.+..++..+..+|.+.|++++|...+......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---------------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66789999999999999999999999998752 346778899999999999999999999998877
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
... +...+..+...+...++++.+...+.+..... +.+...+..+..++...|++++|.+.|++..+.. +.+..+|.
T Consensus 69 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 145 (184)
T 3vtx_A 69 DTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQ 145 (184)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred Cch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHH
Confidence 544 66777788888899999999999999998874 4467888999999999999999999999998763 55788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 230 TLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+..+|.+.|++++|++.|++..+.
T Consensus 146 ~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999988764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-13 Score=100.86 Aligned_cols=193 Identities=9% Similarity=-0.019 Sum_probs=168.6
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCchhhH
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----MGRVSHGFVVLGRILRSCFTPDVVTF 109 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 109 (256)
.+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|..+|++..+.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------- 72 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 72 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence 366778889999999999999999999998843 55788889999999 999999999999998863
Q ss_pred HhhhhhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHH
Q 047518 110 TSLIKVCKPDAITYNTIIDGLCK----QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEM 181 (256)
Q Consensus 110 ~~ll~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~ 181 (256)
+...+..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|...+++.
T Consensus 73 ---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 73 ---------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp ---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 45677888899999 999999999999998875 67788888899988 99999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 047518 182 MDQGVQPNVVTFNVIMDELCK----NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMES 253 (256)
Q Consensus 182 ~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 253 (256)
.+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+
T Consensus 141 ~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 141 CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 9875 56678888888888 999999999999999874 56788889999999 9999999999998876
Q ss_pred cC
Q 047518 254 MG 255 (256)
Q Consensus 254 ~g 255 (256)
.|
T Consensus 215 ~~ 216 (273)
T 1ouv_A 215 LE 216 (273)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=105.62 Aligned_cols=194 Identities=10% Similarity=0.031 Sum_probs=164.7
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
...|..+...+...|++++|...|++..+.. .+..++..+..++...|++++|...++++.+.. |+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~---------- 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--RE---------- 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cc----------
Confidence 4568889999999999999999999998887 678899999999999999999999999988741 10
Q ss_pred cCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHH
Q 047518 116 CKPD----AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191 (256)
Q Consensus 116 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 191 (256)
..++ ..++..+...|...|++++|...|++..... |+. ..+...|++++|...++.+.... +.+..
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 140 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAE 140 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHH
Confidence 0011 5678899999999999999999999998864 342 34566789999999999999863 33567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|.+.+++..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88899999999999999999999998763 457889999999999999999999999988754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=111.56 Aligned_cols=217 Identities=12% Similarity=-0.002 Sum_probs=167.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|++++|+..|+++....|. +..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~ 126 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGR 126 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhcc
Confidence 44567789999999999999998765 77889999999999999999999999998864 3367889999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|...++++.+.. |+.......+..+...|++++|...+........ ++...+. ++..+.
T Consensus 127 ~~~A~~~~~~a~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~~~~~~ 188 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDD----------------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGWN-IVEFYL 188 (275)
T ss_dssp HHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHHH-HHHHHT
T ss_pred HHHHHHHHHHHHHhC----------------CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHHH-HHHHHH
Confidence 999999999998852 2222233344455677999999999988776533 3444444 677778
Q ss_pred ccCCHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 047518 167 YANDWNEAKRLFIEMMDQGVQ---PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (256)
..++.++|...++........ .+...+..+..++...|++++|...|++..+.. |+. +.....++...|++++
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~ 264 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQ 264 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHh
Confidence 888899999999988754211 125788999999999999999999999999763 422 2333556778888888
Q ss_pred HHHHH
Q 047518 244 AKELF 248 (256)
Q Consensus 244 a~~~~ 248 (256)
|++.+
T Consensus 265 a~~~~ 269 (275)
T 1xnf_A 265 DQDDL 269 (275)
T ss_dssp C----
T ss_pred hHHHH
Confidence 88765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-14 Score=97.76 Aligned_cols=167 Identities=10% Similarity=0.054 Sum_probs=144.4
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
++.+|..+...+.+.|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+.......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------------- 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------------- 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------
Confidence 56789999999999999999999999998774 3467789999999999999999999999887742
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.+...+..+...+...++++.|...+......... +...+..+...+...|++++|+..+++..+.. +.+..+|.
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 145 (184)
T 3vtx_A 70 --TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQ 145 (184)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred --chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHH
Confidence 345667778888999999999999999998876543 67788889999999999999999999999874 34678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+..++.+.|++++|.+.|++..+.
T Consensus 146 ~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=109.45 Aligned_cols=211 Identities=14% Similarity=0.087 Sum_probs=164.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhC-------CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-------GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (256)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|..+++++.+...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----- 100 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE----- 100 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
Confidence 3566888999999999999999999998763 2233456788899999999999999999999876410
Q ss_pred hHHhhh-hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCchHHHHHHHHHHhccCCHHHHHHHHH
Q 047518 108 TFTSLI-KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------NV-KPNVVTYTSVIRGFCYANDWNEAKRLFI 179 (256)
Q Consensus 108 ~~~~ll-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~ 179 (256)
... ...+....++..+...|...|++++|...+++..+. +. +....++..+...+...|++++|...++
T Consensus 101 ---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 101 ---KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp ---HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ---HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000 001123457888999999999999999999988764 22 2245678888899999999999999999
Q ss_pred HHHHc------CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---------------------------------
Q 047518 180 EMMDQ------GVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMIQH--------------------------------- 219 (256)
Q Consensus 180 ~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------------------------- 219 (256)
++.+. +..| ...++..+..++...|++++|...++++.+.
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 98864 2123 3557888999999999999999999988752
Q ss_pred ---------------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 220 ---------------GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 220 ---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+....++..+..+|.+.|++++|.+++++..+
T Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122345788899999999999999999998765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-13 Score=100.83 Aligned_cols=203 Identities=12% Similarity=0.104 Sum_probs=164.4
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
|...+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.+.+ ++.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------- 70 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NAT-------- 70 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTT--------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--Cch--------
Confidence 34457778889999999999999999998874 2355688999999999999999999999999843 221
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
......|..+...|...|++++|...|+...+.... +..++..+...|...|++++|...+++..+.. +.+...+.
T Consensus 71 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~ 146 (272)
T 3u4t_A 71 --KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFY 146 (272)
T ss_dssp --TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHH
T ss_pred --hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHH
Confidence 123456888999999999999999999999887543 66789999999999999999999999998873 34567777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHh
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR---VNHAKELFVSMES 253 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~ 253 (256)
.+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...+++..+
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 77734555669999999999998863 4457788888888888888 8888888887664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-15 Score=115.01 Aligned_cols=239 Identities=11% Similarity=0.056 Sum_probs=165.0
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHhhC----CC-CCCHhhHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPP--VSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GL-FPDLYTHSILI 78 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 78 (256)
.|..+...|++++|+..|+++.+..+..+. ..+|..+...+...|++++|...+++..+. +. +....++..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 345567889999999999999998654111 146888999999999999999999987543 21 22346788899
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC-----------------HHHHHH
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF-----------------VDKAKE 141 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~ 141 (256)
..|...|++++|...++++.+...... ..+....++..+...|...|+ +++|..
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLG---------DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHT---------CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 999999999999999998876310000 011223466777778888888 888888
Q ss_pred HHHHHHhC----CC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHhcCChhHHHH
Q 047518 142 LFLKMKDK----NV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PN----VVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 142 ~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
.+.+.... +. .....++..+...+...|++++|...+++..+.... ++ ..++..+..++...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 77765432 11 112346677777788888888888888877643100 11 2366777778888888888888
Q ss_pred HHHHHHHCC----CC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 212 LLDLMIQHG----VR-PDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 212 ~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+++..+.. .. ....++..+...|...|++++|..++++..+
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887765421 00 1145667777778888888888887776653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-13 Score=104.54 Aligned_cols=197 Identities=9% Similarity=0.054 Sum_probs=169.4
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-cchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR-VSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
...|..+...+...|++++|+..+++..+.. +-+..+|..+..++...|+ +++|+..|+++++..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~------------- 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------------- 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------------
Confidence 4568888899999999999999999998874 3367889999999999997 999999999999852
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.+..+|..+..++...|++++|+..|+++.+.... +..+|..+..++...|++++|+..++++++.. +-+...|+
T Consensus 163 --P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~ 238 (382)
T 2h6f_A 163 --PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWN 238 (382)
T ss_dssp --TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHH
T ss_pred --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHH
Confidence 446778999999999999999999999999988654 78899999999999999999999999999875 34788999
Q ss_pred HHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHH
Q 047518 195 VIMDELCK-NGKMDEA-----SSLLDLMIQHGVRPDAFTYNTLLDGFCLTG--RVNHAKELFVSM 251 (256)
Q Consensus 195 ~ll~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m 251 (256)
.+..++.. .|..++| ...+++..... +-+...|..+...+...| ++++|++.++++
T Consensus 239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 99999999 6665887 48888888753 446778999988898888 689999988876
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=114.69 Aligned_cols=190 Identities=11% Similarity=0.008 Sum_probs=164.3
Q ss_pred CCCCCCCcCCh-hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 6 SGEGDITTITP-NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 6 ~~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
.|..+...|++ ++|+..|++..+..|. +...|..+...|.+.|++++|...|++..+. .|+...+..+..++...
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~ 183 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPE--LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQL 183 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHh
Confidence 34566788999 9999999999998775 7889999999999999999999999999987 46778999999999999
Q ss_pred ---------CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 047518 85 ---------GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ--------GFVDKAKELFLKMK 147 (256)
Q Consensus 85 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 147 (256)
|++++|+..++++.+.. +.+...|..+..+|... |++++|...|++..
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al 248 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMD---------------VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE 248 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 99999999999998852 34677888999999998 99999999999998
Q ss_pred hCCCC--CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047518 148 DKNVK--PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215 (256)
Q Consensus 148 ~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (256)
+.... -+...|..+..+|...|++++|...+++..+.. +.+...+..+..++...|++++|...+..
T Consensus 249 ~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 86431 377889999999999999999999999999874 33567888899999999999988876543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-14 Score=109.96 Aligned_cols=234 Identities=11% Similarity=-0.018 Sum_probs=175.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCC----CcccHHHHHHHHHccCChHHHHHHHHHHhhCC--C---C-CCHhhHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPP----PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--L---F-PDLYTHSI 76 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~~ 76 (256)
|..+...|++++|+..|++..+.....+ ...++..+...+...|+++.|...+++..+.- . . ....++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4456678999999999999987522112 34678899999999999999999999876531 1 1 12357888
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 047518 77 LINCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NV 151 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 151 (256)
+..+|...|++++|...+++..+..-. ++. .....++..+...|...|++++|...+++..+. +.
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQP----------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998764110 000 112347888999999999999999999988762 23
Q ss_pred -CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCC
Q 047518 152 -KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPNVVTFNVIMDELCKNGK---MDEASSLLDLMIQHGVRP 223 (256)
Q Consensus 152 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~ 223 (256)
+....++..+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 335677889999999999999999999998753 112223345678888888998 66666666654 3233
Q ss_pred -CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 224 -DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 224 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
....+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334677889999999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-13 Score=111.92 Aligned_cols=166 Identities=11% Similarity=0.040 Sum_probs=127.1
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+..+|+.+..++.+.|++++|++.|++.++. .+.+..+|..+..+|.+.|++++|+..|++..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---------------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888888888888888888888887774 1335667788888888888888888888888776
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (256)
... +..+|..+..++...|++++|++.+++..+.. +-+...|..+..++...|++++|+..|++..+.. +-+...+.
T Consensus 73 ~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~ 149 (723)
T 4gyw_A 73 SPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYC 149 (723)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHh
Confidence 433 56778888888888888888888888888764 2356778888888888888888888888887753 33567788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 047518 230 TLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+..++...|++++|.+.+++..+
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHH
Confidence 888888888888888887777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-13 Score=91.81 Aligned_cols=165 Identities=17% Similarity=0.107 Sum_probs=141.1
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 72 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---------------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3467778888899999999999998877641 3456778889999999999999999999988764
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (256)
. .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..
T Consensus 73 ~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 149 (186)
T 3as5_A 73 P-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRA 149 (186)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHH
Confidence 3 367788889999999999999999999998874 4567888999999999999999999999998763 456788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 047518 231 LLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 231 l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+...+...|++++|.+.+++..+
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-13 Score=112.11 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=146.1
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.++.+|+.+...+.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|+..|++.++..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------------ 73 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------------ 73 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 356789999999999999999999999998874 3356789999999999999999999999998852
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
+.+..+|..+..+|...|++++|+..|++..+.... +..+|..+..+|...|++++|+..+++..+.. +-+...+
T Consensus 74 ---P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~ 148 (723)
T 4gyw_A 74 ---PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAY 148 (723)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 345778999999999999999999999999887543 67889999999999999999999999999874 3357789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+..++...|++++|.+.++++.+
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999988764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-12 Score=103.14 Aligned_cols=218 Identities=11% Similarity=0.082 Sum_probs=172.9
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-------cCChH-------HHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-------NKHYD-------TVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
+++..+|++.....|. +...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.
T Consensus 255 ~~a~~~y~~al~~~p~--~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3677899998887664 77889988888875 68987 89999999986322345788999999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA-ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
+.|++++|..+|+++++. .| .+. ..|..++..+.+.|++++|..+|++..+... .+...|...
T Consensus 333 ~~g~~~~A~~~~~~al~~--~p-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~ 396 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAI--ED-------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTA 396 (530)
T ss_dssp HTTCHHHHHHHHHHHHHS--SS-------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHH
T ss_pred hcCCHHHHHHHHHHHhCc--cc-------------cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHH
Confidence 999999999999999984 22 122 4788888999999999999999999987632 233333332
Q ss_pred HHH-HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHhHHHHHHHHHh
Q 047518 162 IRG-FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRP--DAFTYNTLLDGFCL 237 (256)
Q Consensus 162 i~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~ 237 (256)
... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+.....
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 222 346899999999999998763 3467889999999999999999999999999863 223 24478888888888
Q ss_pred cCChhHHHHHHHHHHh
Q 047518 238 TGRVNHAKELFVSMES 253 (256)
Q Consensus 238 ~g~~~~a~~~~~~m~~ 253 (256)
.|+.+.+.++.+++.+
T Consensus 476 ~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 476 IGDLASILKVEKRRFT 491 (530)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-14 Score=108.02 Aligned_cols=205 Identities=12% Similarity=0.150 Sum_probs=91.5
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|.++.+.|++++|++.|.+. +|...|..++..+...|++++|+++++..++. .+++.+.+.++.+|.+.|
T Consensus 38 La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 38 LAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhC
Confidence 456666666677776666442 34446666666666666666666655554442 223344444444455444
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhc------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
++.++.++++ .|+..++..+...+ -.....|..++.++.+.|++++|.+.+.++ .
T Consensus 109 ~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA------~ 175 (449)
T 1b89_A 109 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------N 175 (449)
T ss_dssp CHHHHTTTTT-------CC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------T
T ss_pred CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc------C
Confidence 4444444332 12222222221100 001135889999999999999999999998 2
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
++.+|..++.+|...|+++.|......+. ..|+ -...++..|.+.|++++|..+++...... +-....|+.+..
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~i 249 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 249 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHH
Confidence 78899999999999999999966555422 2333 35578899999999999999999988654 446677888777
Q ss_pred HHHhc
Q 047518 234 GFCLT 238 (256)
Q Consensus 234 ~~~~~ 238 (256)
+|++-
T Consensus 250 l~~ky 254 (449)
T 1b89_A 250 LYSKF 254 (449)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 77764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-12 Score=90.36 Aligned_cols=166 Identities=16% Similarity=0.069 Sum_probs=142.4
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------- 72 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 3457778889999999999999999988764 3467788999999999999999999999988752
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
+.+...+..+...+...|++++|...++.+..... .+...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 73 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 149 (186)
T 3as5_A 73 -PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRA 149 (186)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHH
Confidence 34567788889999999999999999999887643 367788889999999999999999999999874 446788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 047518 196 IMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+...+...|++++|...++...+.
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999988753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=113.18 Aligned_cols=238 Identities=11% Similarity=0.061 Sum_probs=165.6
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHhhC----CCCC-CHhhHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPP--VSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFP-DLYTHSILI 78 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~ 78 (256)
.|..+...|++++|+..|++..+..+..+. ..+|..+...+...|+++.|...+++.... +..| ...++..+.
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 355667889999999999999998664221 356888999999999999999999986443 2222 245788889
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC--------------------HH
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF--------------------VD 137 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~--------------------~~ 137 (256)
..+...|++++|...+++..+..-. ++. .....++..+...|...|+ ++
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDK----------VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccc----------cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 9999999999999999988763100 000 0113466777788888888 88
Q ss_pred HHHHHHHHHHhC----CCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHHhcCChh
Q 047518 138 KAKELFLKMKDK----NVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV-QPN----VVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 138 ~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~ 207 (256)
+|...+...... +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888887765432 111 1234667777778888888888888887764310 111 236777777888888888
Q ss_pred HHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 208 EASSLLDLMIQH----GVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 208 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|...+++..+. +..+ ...++..+...|...|++++|.+.+++..+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 888888776532 1111 144667777788888888888888776653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-12 Score=97.54 Aligned_cols=184 Identities=12% Similarity=0.055 Sum_probs=151.2
Q ss_pred hhhHHHHHHHHHH-hCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-Hh-hHHHHHHHHHhcCCcchHHH
Q 047518 16 PNEALCIFDYMLR-MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LY-THSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 16 ~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~ 92 (256)
+++|..+|++..+ ..|. +...|..++..+.+.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|..
T Consensus 80 ~~~A~~~~~rAl~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 80 SDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHTTTTTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHH
Confidence 3999999999988 4553 6778999999999999999999999999985 444 33 89999999999999999999
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCH
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL-CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 171 (256)
+|++.++.. | .+...|....... ...|++++|..+|+...+... -+...|..++..+.+.|+.
T Consensus 156 ~~~~a~~~~--p-------------~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~ 219 (308)
T 2ond_A 156 IFKKAREDA--R-------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNED 219 (308)
T ss_dssp HHHHHHTST--T-------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhcC--C-------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCH
Confidence 999998852 2 2233444333332 237999999999999887643 3678899999999999999
Q ss_pred HHHHHHHHHHHHcC-CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 172 NEAKRLFIEMMDQG-VQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 172 ~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
++|..+|++..... ..| ....|..++....+.|+.+.|..+++++.+.
T Consensus 220 ~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 220 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999863 354 4678999999999999999999999999874
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=108.61 Aligned_cols=237 Identities=11% Similarity=0.070 Sum_probs=156.9
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHhhC----CCCC-CHhhHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPP--VSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFP-DLYTHSILI 78 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~ 78 (256)
.|..+...|++++|+..|+++.+..+..+. ...+..+...+...|+++.|...+++..+. +..| ...++..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 355667899999999999999998654111 357888999999999999999999987543 2122 245788889
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC--------------------HH
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF--------------------VD 137 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~--------------------~~ 137 (256)
..+...|++++|...+++..+.... ++. .....++..+...|...|+ ++
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDK----------VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCc----------hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 9999999999999999988763110 010 0113356666777777777 77
Q ss_pred HHHHHHHHHHhC----CC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHHhcCChh
Q 047518 138 KAKELFLKMKDK----NV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GV-QPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 138 ~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~ 207 (256)
+|...+.+.... +. .....++..+...+...|++++|...+++..+. +. .....++..+...+...|+++
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 777777665431 11 112345666667777777777777777776532 10 011235666677777777777
Q ss_pred HHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 208 EASSLLDLMIQH----GVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 208 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+|...+++..+. +..+ ...++..+...|...|++++|...+++..
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777777766532 1000 13456666677777777777777776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=102.65 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=157.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC------CC-CCCHh
Q 047518 7 GEGDITTITPNEALCIFDYMLRM-------HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST------GL-FPDLY 72 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~ 72 (256)
+..+...|++++|+..|+++.+. ... ....++..+...+...|++++|...+++..+. +. +....
T Consensus 34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 44567889999999999998874 221 35567889999999999999999999998654 22 22356
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh-hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-- 149 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 149 (256)
++..+...+...|++++|..+++++.+.... .. ...+.....+..+...+...|++++|..++++....
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREK--------VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH--------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999998874100 00 000123456788899999999999999999998764
Q ss_pred ----CCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHc----------------------------------------
Q 047518 150 ----NVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---------------------------------------- 184 (256)
Q Consensus 150 ----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------------------------- 184 (256)
+..| ...++..+...+...|++++|...++++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2122 3457888899999999999999999998853
Q ss_pred --------CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 185 --------GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 185 --------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122456788899999999999999999998875
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-11 Score=95.90 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=145.5
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK---- 83 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 83 (256)
..+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.| +...+..+...|..
T Consensus 55 ~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 3788889999998887753 45677888888888 888999999999888765 55667777778877
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhh-------------------hcCCCHHHHHHHHHHHHh----cCCHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------VCKPDAITYNTIIDGLCK----QGFVDKAK 140 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-------------------~~~~~~~~~~~l~~~~~~----~~~~~~a~ 140 (256)
.+++++|+.+|++..+.|........-.+.. .-..+...+..+...|.. .+++++|.
T Consensus 128 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 7788889999888877642110000000000 011345555566666665 56666666
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChhHHHHH
Q 047518 141 ELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASSL 212 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~ 212 (256)
..|.+..+.| +..++..+...|.. .+++++|..++++..+.+ +...+..+...+.. .+++++|...
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 6666666553 34445555555553 566666766666666543 33455555555655 6677777777
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhc-----CChhHHHHHHHHHHhcC
Q 047518 213 LDLMIQHGVRPDAFTYNTLLDGFCLT-----GRVNHAKELFVSMESMG 255 (256)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g 255 (256)
|+...+.| +...+..+...|... +++++|..++++..+.|
T Consensus 282 ~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 282 YRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 77766553 445566666666665 67777777777666544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-13 Score=100.07 Aligned_cols=197 Identities=14% Similarity=0.044 Sum_probs=143.4
Q ss_pred ccCChHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC---CCchhhHHhhhhhcC
Q 047518 48 KNKHYDTVLSLFKRLNS-------TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF---TPDVVTFTSLIKVCK 117 (256)
Q Consensus 48 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~ 117 (256)
..|+++.|+..+++..+ ...+....++..+...+...|++++|+..++++.+... .++ .+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~ 82 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD----------HP 82 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT----------CH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc----------ch
Confidence 34555555555554433 12122355777788888888888888888888776310 000 01
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc------
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------N-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ------ 184 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------ 184 (256)
....++..+...|...|++++|...+.+.... . .+....++..+...+...|++++|...+++..+.
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 23457888999999999999999999988754 1 1234677888999999999999999999998864
Q ss_pred CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--------------------------------------------
Q 047518 185 GVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMIQH-------------------------------------------- 219 (256)
Q Consensus 185 ~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------------------------------------- 219 (256)
+-.| ...++..+..++...|++++|...+++..+.
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 1122 3567888999999999999999999988752
Q ss_pred ----CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 220 ----GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 220 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+....++..+...|...|++++|.+++++..+.
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11223446888999999999999999999988753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=102.25 Aligned_cols=200 Identities=14% Similarity=0.101 Sum_probs=153.5
Q ss_pred CCCCcCChhhHHHHHHHHHHhC-----CC-CCCcccHHHHHHHHHccCChHHHHHHHHHHhhC------CCCC-CHhhHH
Q 047518 9 GDITTITPNEALCIFDYMLRMH-----PS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST------GLFP-DLYTHS 75 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~ 75 (256)
.....|++++|+..|++..+.- .. +....++..+...+...|++++|...+++..+. +-.| ...++.
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 4567889999999998877631 11 134667889999999999999999999998654 2222 356889
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCC---CCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 047518 76 ILINCFCKMGRVSHGFVVLGRILRSCF---TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--- 149 (256)
Q Consensus 76 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 149 (256)
.+..+|...|++++|..+++++.+... .++ .+....++..+...|...|++++|...+++..+.
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF----------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC----------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876410 000 0123557888999999999999999999988764
Q ss_pred ---C-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----------------------------------------
Q 047518 150 ---N-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----------------------------------------- 184 (256)
Q Consensus 150 ---~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------------------------- 184 (256)
+ .+....++..+...|...|++++|...+++..+.
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1 1224567888999999999999999999998753
Q ss_pred -------CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 185 -------GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 185 -------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+....++..+..+|...|++++|..++++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122345678899999999999999999998875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-12 Score=101.80 Aligned_cols=232 Identities=10% Similarity=0.006 Sum_probs=173.0
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCC----cccHHHHHHHHHccCChHHHHHHHHHHhhC----CC-CC-CHhhHHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPP----VSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GL-FP-DLYTHSIL 77 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l 77 (256)
..+...|++++|+..|++..+.....++ ..++..+...|...|+++.|...+++..+. +. .+ ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3456789999999999998875332122 456888999999999999999999987543 11 11 24578889
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC
Q 047518 78 INCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD-----KNV 151 (256)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~ 151 (256)
..+|...|++++|...+++..+..-. ++. .....++..+..+|...|++++|...+.+... ...
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQND----------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 99999999999999999998763100 010 11234678899999999999999999999876 432
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCC-
Q 047518 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV----QPNVVTFNVIMDELCKNGK---MDEASSLLDLMIQHGVRP- 223 (256)
Q Consensus 152 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~- 223 (256)
....++..+...+.+.|++++|...+++..+... +.....+..+...+...++ +.+|...++. .+..|
T Consensus 259 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~ 334 (378)
T 3q15_A 259 -LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAY 334 (378)
T ss_dssp -GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHH
T ss_pred -hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhH
Confidence 3467888899999999999999999999886421 2223455666666777788 6666666665 33223
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
....+..+...|...|++++|...+++..+
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234677888999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-12 Score=91.71 Aligned_cols=133 Identities=10% Similarity=-0.037 Sum_probs=63.2
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
+..+......+...|++++|+..|+...+...+++...+..+..++...|++++|+..+++..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------- 72 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-------------- 72 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------------
Confidence 344444555555555555555555555444322344444445555555555555555555554421
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch-------HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV-------VTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+.+...|..+..+|...|++++|...+++..+.... +. ..|..+-..+...|++++|...+++..+.
T Consensus 73 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 73 -YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp -CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred -cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 112334444555555555555555555555443221 22 23444444445555555555555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-14 Score=109.49 Aligned_cols=238 Identities=10% Similarity=0.000 Sum_probs=177.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhC----CCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC----CC-CCCHhhHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMH----PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GL-FPDLYTHSIL 77 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 77 (256)
|..+...|++++|+..|++..... ..+....++..+...+...|++++|...+++..+. +- +....++..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 445667899999999999987651 11134567888999999999999999999987654 11 1234578888
Q ss_pred HHHHHhcCC-----------------cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 047518 78 INCFCKMGR-----------------VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140 (256)
Q Consensus 78 ~~~~~~~~~-----------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (256)
...|...|+ +++|+.++++..+..... ........++..+...|...|++++|.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~ 243 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL---------GDRGAQGRACGNLGNTYYLLGDFQAAI 243 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999999999 888988888876531000 000122347788899999999999999
Q ss_pred HHHHHHHhCCCC-----CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--C---CcHHHHHHHHHHHHhcCChhHHH
Q 047518 141 ELFLKMKDKNVK-----PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--Q---PNVVTFNVIMDELCKNGKMDEAS 210 (256)
Q Consensus 141 ~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~ll~~~~~~g~~~~a~ 210 (256)
..+++..+.... ....++..+...|...|++++|...+++...... . ....++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (411)
T 4a1s_A 244 EHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI 323 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999987653111 1123788888999999999999999999875311 0 12567888999999999999999
Q ss_pred HHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 211 SLLDLMIQH----GV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 211 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+++..+. +. .....++..+..+|...|++++|.+.+++..+
T Consensus 324 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 324 EYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999988752 11 11234788889999999999999999998765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-11 Score=94.93 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=171.1
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----c
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----M 84 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 84 (256)
.+++++|+..|++....+ +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .
T Consensus 92 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 678888888888887643 44567777777777 778888888888887765 45667777777776 6
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhh----------------------hcCCCHHHHHHHHHHHHh----cCCHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLCK----QGFVDK 138 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~----------------------~~~~~~~~~~~l~~~~~~----~~~~~~ 138 (256)
+++++|+.+|++..+.|. ...+..+-. .-..+...+..+...|.. .+++++
T Consensus 165 ~d~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQGN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 778888888888777642 111111100 112466778888888886 899999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-----CChhHH
Q 047518 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-----GKMDEA 209 (256)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a 209 (256)
|...|++..+.| +...+..+...|.. .++.++|...++...+.| +...+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998875 45566677777777 899999999999998875 456777888888887 899999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhcC
Q 047518 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKELFVSMESMG 255 (256)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g 255 (256)
...|++..+.| +...+..+...|...| +.++|.+++++..+.|
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 99999999875 5677888888888767 8899999999987765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-13 Score=101.69 Aligned_cols=238 Identities=8% Similarity=-0.004 Sum_probs=175.1
Q ss_pred CCCCCCcCChhhHHHHHHHHHHh----CCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCC-CCC----HhhHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRM----HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPD----LYTHSIL 77 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 77 (256)
+..+...|++++|++.+++.... +..+....++..+...+...|++++|...+++..+... .++ ..++..+
T Consensus 50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 129 (338)
T 3ro2_A 50 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 44566789999999999987654 11212356788899999999999999999998754311 112 3478888
Q ss_pred HHHHHhcCC--------------------cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHH
Q 047518 78 INCFCKMGR--------------------VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137 (256)
Q Consensus 78 ~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~ 137 (256)
...+...|+ +++|...+++..+..... ........++..+...+...|+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL---------GDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHhCCHH
Confidence 899999999 888888888776521000 000112346788889999999999
Q ss_pred HHHHHHHHHHhCC----C-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CCC-cHHHHHHHHHHHHhcCChh
Q 047518 138 KAKELFLKMKDKN----V-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG----VQP-NVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 138 ~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~g~~~ 207 (256)
+|...+++..+.. . .....++..+...+...|++++|...+++..+.. ..+ ...++..+...+...|+++
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 280 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence 9999999876431 1 1123477888889999999999999999987531 111 1567788899999999999
Q ss_pred HHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 208 EASSLLDLMIQH----GV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 208 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|...+++..+. +. .....++..+...|.+.|++++|.+.+++..+
T Consensus 281 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 281 KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999987642 11 11244778899999999999999999998875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-13 Score=104.73 Aligned_cols=238 Identities=9% Similarity=-0.004 Sum_probs=176.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCC----CCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC----CCC-CHhhHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHP----SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG----LFP-DLYTHSIL 77 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l 77 (256)
|..+...|++++|...|++...... .+....++..+...+...|++++|...+++..+.. ..+ ...++..+
T Consensus 54 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 133 (406)
T 3sf4_A 54 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4456778999999999998765421 11235578889999999999999999999876531 111 13478888
Q ss_pred HHHHHhcCC--------------------cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHH
Q 047518 78 INCFCKMGR--------------------VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137 (256)
Q Consensus 78 ~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~ 137 (256)
...+...|+ +++|...+.+..+...... ..+....++..+...|...|+++
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~ 204 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG---------DRAAQGRAFGNLGNTHYLLGNFR 204 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTBHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHHHHccCHH
Confidence 999999999 8999998888765310000 00112446788899999999999
Q ss_pred HHHHHHHHHHhCC----CC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhcCChh
Q 047518 138 KAKELFLKMKDKN----VK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQP-NVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 138 ~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~ 207 (256)
+|...+++..+.. .. ....++..+...+...|++++|...+++.... +..+ ...++..+...+...|+++
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 9999999876431 11 11347888889999999999999999998753 1111 1567888999999999999
Q ss_pred HHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 208 EASSLLDLMIQH----GVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 208 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|...+++..+. +..+ ...++..+...|...|++++|.+.+++..+
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988652 1111 145788889999999999999999988654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-11 Score=88.12 Aligned_cols=168 Identities=12% Similarity=-0.003 Sum_probs=140.4
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
.|+..+......+...|++++|+..|++..+..- +++...+..+..++...|++++|+..|++...
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 70 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIK 70 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 4567888899999999999999999999988521 14566677789999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV-------VTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
.... +..++..+...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++..+.
T Consensus 71 ~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-- 146 (228)
T 4i17_A 71 KNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-- 146 (228)
T ss_dssp TTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--
T ss_pred hCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--
Confidence 7544 67789999999999999999999999999864 2234 45888888999999999999999999875
Q ss_pred CCC---HHhHHHHHHHHHhcCCh---------------------------hHHHHHHHHHHhc
Q 047518 222 RPD---AFTYNTLLDGFCLTGRV---------------------------NHAKELFVSMESM 254 (256)
Q Consensus 222 ~~~---~~~~~~l~~~~~~~g~~---------------------------~~a~~~~~~m~~~ 254 (256)
.|+ ...+..+..+|...|+. ++|+..+++..+.
T Consensus 147 ~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 147 TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 454 56788888888888877 8888888877653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-11 Score=102.10 Aligned_cols=190 Identities=9% Similarity=0.041 Sum_probs=144.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhh------
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT------ 108 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------ 108 (256)
+..+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|++++....+..-.+...+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 4567889999999999999999999664 3677888899999999999999999988776542221111
Q ss_pred --------HHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHH
Q 047518 109 --------FTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180 (256)
Q Consensus 109 --------~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 180 (256)
+..++ -.++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++
T Consensus 1178 AKl~rleele~fI--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HhhcCHHHHHHHH--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11111 2456667777889999999999999999874 3788899999999999999998887
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 181 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
. .+..+|..+..+|...|+++.|......+ ..++..+..++..|.+.|.+++|+.+++.-.
T Consensus 1247 A------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1247 A------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred h------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6 24577887778888888877777765532 3356667788888888888888888886653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-11 Score=79.04 Aligned_cols=130 Identities=15% Similarity=0.239 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 201 (256)
.|..+...+...|++++|..+++.+.+.+. .+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 567788899999999999999999987654 367788889999999999999999999999874 446778889999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998763 456788899999999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-12 Score=93.26 Aligned_cols=203 Identities=10% Similarity=-0.016 Sum_probs=146.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhC----CCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNST----GLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
|......|...|++++|...|++..+. |-+++ ..+|+.+..+|...|++++|+..+++.++.. +..
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--~~~------- 110 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF--THR------- 110 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHc-------
Confidence 333456778899999999999987543 32222 4689999999999999999999999988731 000
Q ss_pred hhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC---C-c-hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 114 KVCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVK---P-N-VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~---~-~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.....-..+++.+..+|... |++++|+..|++..+.... + . ..++..+...+...|++++|...+++..+....
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 00001134788899999996 9999999999988754211 1 1 356888899999999999999999999986433
Q ss_pred CcH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 047518 188 PNV------VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA------FTYNTLLDGFC--LTGRVNHAKELFVSME 252 (256)
Q Consensus 188 ~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~m~ 252 (256)
... ..+..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..+++++|++.|+++.
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 222 25677888899999999999999998763 3332 13445566664 4567888888876653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-11 Score=97.75 Aligned_cols=238 Identities=13% Similarity=0.012 Sum_probs=126.8
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHH---HHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cC
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGC---LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----MG 85 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 85 (256)
.+++++|+..|++..+..|. +...+..+... +...++.++|++.+++..+.. +.+..++..+...+.. .+
T Consensus 151 ~~~y~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPK--NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGE 227 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC----
T ss_pred cccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhh
Confidence 45788888888888777664 44444443333 334566666666666555442 2233334333333332 23
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHh--------------------hhhhcCCCHHHHHHHHHHHHh-------------
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTS--------------------LIKVCKPDAITYNTIIDGLCK------------- 132 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------ll~~~~~~~~~~~~l~~~~~~------------- 132 (256)
++++|.+++++..+... ....++.. .+...+.+..++..+..+|..
T Consensus 228 ~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44555555555544311 11111111 111223445556655555432
Q ss_pred ------cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHH-HHHhc
Q 047518 133 ------QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV--TFNVIMD-ELCKN 203 (256)
Q Consensus 133 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~-~~~~~ 203 (256)
.+.++.|...+......... +..++..+...+...|++++|...|++..+....+... .+..+.. .....
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC
Confidence 22356677777777665432 55667778888888899999999888888764433221 2222222 23467
Q ss_pred CChhHHHHHHHHHHHCC-----------------------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 204 GKMDEASSLLDLMIQHG-----------------------VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
|++++|+..|.+..+.. -+.+..+|..+...|...|++++|++.|++..+.|
T Consensus 386 ~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 88888888887765431 13456788999999999999999999999987654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-10 Score=90.03 Aligned_cols=236 Identities=11% Similarity=0.031 Sum_probs=159.9
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCChHHHHHHHHHHhhCCC-CCC----HhhHHHHHHH
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPV----SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPD----LYTHSILINC 80 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~ 80 (256)
+...|++++|...+++.....+. .+. .+++.+...+...|+++.|...+++..+... ..+ ..++..+...
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 45689999999999998886543 222 2466777888899999999999998754310 111 2346677888
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--chH
Q 047518 81 FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--P--NVV 156 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~ 156 (256)
+...|++++|...+++..+........ ..+.....+..+...+...|++++|...+.+....... + ...
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLE-------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCT-------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccc-------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 999999999999999887631000000 00012335566778888999999999999887654221 1 234
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHh
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFN-----VIMDELCKNGKMDEASSLLDLMIQHGVRP---DAFT 227 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~ 227 (256)
++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++........+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677777888889999999999988875311111 11121 23344778899999999988876543211 1234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 228 YNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..+...+...|++++|...+++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777888888999999888877643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-11 Score=93.22 Aligned_cols=236 Identities=11% Similarity=0.006 Sum_probs=167.9
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCChHHHHHHHHHHhhC----CCC--C-CHhhHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPV----SSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLF--P-DLYTHSI 76 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ 76 (256)
..+...|++++|...+++.....+...+. .++..+...+...|++++|...+++..+. +.. | ....+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 34556899999999999987654332222 23567788899999999999999987543 222 2 2346677
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--
Q 047518 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN-- 154 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 154 (256)
+...+...|++++|...+++..+..-.... ......+..+...+...|++++|...+++.......++
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQP----------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCG----------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCc----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 888999999999999999998875322111 11234677888999999999999999998865321111
Q ss_pred hHHHH----HHHHHHhccCCHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCC
Q 047518 155 VVTYT----SVIRGFCYANDWNEAKRLFIEMMDQGVQP---NVVTFNVIMDELCKNGKMDEASSLLDLMIQ----HGVRP 223 (256)
Q Consensus 155 ~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~ 223 (256)
..... ..+..+...|++++|...+++.......+ ....+..+...+...|++++|...++.... .|..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 290 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh
Confidence 11111 23344778999999999999887543221 133567788899999999999999998764 22222
Q ss_pred CH-HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 224 DA-FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 224 ~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+. ..+..+..++...|+.++|...+++...
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22 3666778889999999999999887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-10 Score=91.72 Aligned_cols=233 Identities=9% Similarity=-0.073 Sum_probs=156.6
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc--CChHHHHHHHHHHhhCCCCCCHhhHHHHHHH---HHhcCCcch
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN--KHYDTVLSLFKRLNSTGLFPDLYTHSILINC---FCKMGRVSH 89 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~ 89 (256)
.+++|+++.......... ....++..+..++... +++++|+..|++..+.. +.+...+..+..+ +...++.++
T Consensus 116 ~~~ka~~i~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 116 YVDKVKHVCEKFSSPYRI-ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp HHHHHHHHHHHSCCSSCC-CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHhHhcccccch-hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHH
Confidence 356777777765432222 2445677666666554 56999999999998764 2244455555444 445678889
Q ss_pred HHHHHHHHHhcCCCCch-hhHHh------------------------hhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 90 GFVVLGRILRSCFTPDV-VTFTS------------------------LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~-~~~~~------------------------ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
|++.+++.++.. |+. .++.. .+...+.+..++..+...|...|++++|...+.
T Consensus 194 al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 194 AIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp THHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 999999887752 322 11111 111345677788899999999999999999999
Q ss_pred HHHhCCCCCchHHHHHHHHHHhcc-------------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 145 KMKDKNVKPNVVTYTSVIRGFCYA-------------------NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
+..+..+. +..++..+..+|... +..+.|...++...+.. +.+..++..+...+...|+
T Consensus 272 ~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 272 KALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 98876433 555666665554321 33567777788777664 3456678889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHH--hHHHHHH-HHHhcCChhHHHHHHHHHHh
Q 047518 206 MDEASSLLDLMIQHGVRPDAF--TYNTLLD-GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~m~~ 253 (256)
+++|...|++..+....+... .+..+.. .....|+.++|+..+++..+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999998864333221 2333332 23567999999999988765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-11 Score=93.39 Aligned_cols=234 Identities=7% Similarity=-0.047 Sum_probs=161.7
Q ss_pred CCCcCChhhHHHHHHHHHHhCCC---CCCcccHHHHHHH--HHccCChHHHH-----------HHHHHHhhCCCCCCH--
Q 047518 10 DITTITPNEALCIFDYMLRMHPS---PPPVSSFNIMLGC--LAKNKHYDTVL-----------SLFKRLNSTGLFPDL-- 71 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~-- 71 (256)
.++.+++++|..+++++.+..+. .++...|..++.. ..-.+..+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 46789999999999998765322 1233333333322 11223344444 666666443111111
Q ss_pred --hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 72 --YTHSILINCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 72 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
..+......+...|++++|...+++..+.... ++.. ....++..+...|...|++++|...+.+..+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI----------EKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12223566778899999999999999874111 1111 1345788899999999999999999998765
Q ss_pred CC--C----CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 149 KN--V----KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 149 ~~--~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.- . .....+++.+...|...|++++|...+++..+. +-. ....++..+..+|...|++++|...+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 31 1 112457888889999999999999999998753 111 113478889999999999999999999887
Q ss_pred HC----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 218 QH----GV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 218 ~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+. +. +....++..+...|.+.|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 61 23 33466788999999999999999999988754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.3e-12 Score=104.10 Aligned_cols=174 Identities=9% Similarity=-0.076 Sum_probs=142.5
Q ss_pred CCcCChhhHHHHHHHHH--------HhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 11 ITTITPNEALCIFDYML--------RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
...|++++|++.|++.. +..+ .+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 57899999999999998 5444 477789999999999999999999999998764 346778999999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
..|++++|+..|+++++.. +.+...|..+..+|.+.|++++ ...|++..+.... +...|..+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~---------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg 541 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF---------------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLA 541 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS---------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHH
Confidence 9999999999999998852 3456778889999999999999 9999999887544 677889999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
.++...|++++|...+++..+.. +-+...+..+..++...++
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999999999999988763 2245677777777766554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.4e-11 Score=86.84 Aligned_cols=194 Identities=12% Similarity=0.003 Sum_probs=143.7
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHH
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT 110 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 110 (256)
.+...+..+...+.+.|++++|+..|+.+.+.. +.+ ...+..+..++...|++++|+..|+++++.. |+.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~---- 85 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QID---- 85 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCC----
Confidence 456677888889999999999999999998864 223 5688889999999999999999999999852 211
Q ss_pred hhhhhcCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCchHHH-----------------HHHHHHH
Q 047518 111 SLIKVCKPDAITYNTIIDGLCK--------QGFVDKAKELFLKMKDKNVKPNVVTY-----------------TSVIRGF 165 (256)
Q Consensus 111 ~ll~~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~ 165 (256)
+....++..+..++.. .|++++|...|+++....+. +.... ..+...|
T Consensus 86 ------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 86 ------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp ------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123467778888888 99999999999999876432 22223 4557788
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCH----HhHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQP--NVVTFNVIMDELCKN----------GKMDEASSLLDLMIQHGVRPDA----FTYN 229 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~----~~~~ 229 (256)
...|++++|...++++.+..... ....+..+..+|... |++++|...|+.+.+. .|+. ....
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~ 236 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEE 236 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHH
Confidence 99999999999999998763221 345677778888766 8889999999999875 3332 2344
Q ss_pred HHHHHHHhcCChhH
Q 047518 230 TLLDGFCLTGRVNH 243 (256)
Q Consensus 230 ~l~~~~~~~g~~~~ 243 (256)
.+...+...++.++
T Consensus 237 ~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 237 LYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhh
Confidence 44444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-12 Score=89.72 Aligned_cols=171 Identities=9% Similarity=0.031 Sum_probs=102.9
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHH----------------HHHHHHhcCCcchHHHHHHHHHhcCCCCc
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI----------------LINCFCKMGRVSHGFVVLGRILRSCFTPD 105 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 105 (256)
....+.+.|++++|+..|++..+.. +.+...|.. +..++.+.|++++|+..|++.++..
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---- 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----
Confidence 3344445555555555555554432 112233444 7777778888888888888777641
Q ss_pred hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC--HHHHHHHHHHHHH
Q 047518 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND--WNEAKRLFIEMMD 183 (256)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~ 183 (256)
+.+...+..+..+|...|++++|...|++..+..+. +..++..+...|...|+ ...+...++....
T Consensus 85 -----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 85 -----------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp -----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 345667777778888888888888888887776433 56667777666655543 3344445544432
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 184 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
..|....+.....++...|++++|...|++..+. .|+......+..
T Consensus 153 --~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 153 --PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 2333334444555666778888888888887764 566655444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-10 Score=75.65 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=61.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCC
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 118 (256)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------~~ 67 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------PR 67 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------TT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---------------CC
Confidence 4445555555555555555555554432 2234445555555555555555555555554421 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
+...+..+...+...|++++|...++.+..... .+..++..+...+...|++++|...++++..
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 233444444555555555555555555444322 1333444444444455555555555544443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-11 Score=100.34 Aligned_cols=173 Identities=9% Similarity=-0.044 Sum_probs=143.9
Q ss_pred HccCChHHHHHHHHHHh--------hCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCC
Q 047518 47 AKNKHYDTVLSLFKRLN--------STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118 (256)
Q Consensus 47 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 118 (256)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++.+. .+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~p~ 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER---------------VGW 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------HCC
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---------------Ccc
Confidence 78899999999999998 432 345678889999999999999999999999874 245
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++ ...+++..+.. +.+...|..+..
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~ 542 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLAR 542 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHH
Confidence 6778999999999999999999999999887543 67788899999999999999 99999999875 346778999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCC
Q 047518 199 ELCKNGKMDEASSLLDLMIQHGVRPD-AFTYNTLLDGFCLTGR 240 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 240 (256)
++.+.|++++|...|++..+. .|+ ...+..+..++...++
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999999999999998775 454 5677777777766554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-10 Score=92.21 Aligned_cols=187 Identities=12% Similarity=0.051 Sum_probs=149.7
Q ss_pred cCChh-------hHHHHHHHHHH-hCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-H-hhHHHHHHHHH
Q 047518 13 TITPN-------EALCIFDYMLR-MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-L-YTHSILINCFC 82 (256)
Q Consensus 13 ~g~~~-------~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~ 82 (256)
.|+++ +|..+|++..+ ..| .+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p--~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLK--KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 367 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHH
Confidence 57876 89999999986 444 47788999999999999999999999999986 444 2 58899999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID-GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
+.|++++|..+|++..+.. |. +...|...+. .+...|++++|..+|+...+... .+...|..+
T Consensus 368 ~~~~~~~A~~~~~~Al~~~--~~-------------~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~ 431 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKAREDA--RT-------------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAY 431 (530)
T ss_dssp HHHHHHHHHHHHHHHHTCT--TC-------------CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcc--CC-------------chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 9999999999999998752 21 1222222222 23468999999999999887643 367889999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCC-CCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGV-QPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..++.++.+.
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998642 232 458888888889999999999999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-10 Score=79.29 Aligned_cols=177 Identities=9% Similarity=-0.023 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----CcchHHH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG----RVSHGFV 92 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~ 92 (256)
.+|++.|++..+.+ ++.++..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|+.
T Consensus 3 ~eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 34666777766542 45667777777777777788887777777654 45566666666666 5 6777777
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHhc
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK----QGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGFCY 167 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 167 (256)
+|++..+. .++..+..|...|.. .+++++|...|.+..+.|.. .+..++..+-..|..
T Consensus 75 ~~~~A~~~-----------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 75 LAEKAVEA-----------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHHHHHHT-----------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-----------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 77777653 345566667777766 67777777777777766532 014556666666665
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHCC
Q 047518 168 ----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-G-----KMDEASSLLDLMIQHG 220 (256)
Q Consensus 168 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 220 (256)
.+++++|..++++..+.+ .+...+..+...|... | ++++|...|+...+.|
T Consensus 138 g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 138 GVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp TSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 667777777777776651 2333455555555432 2 6677777776666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-10 Score=81.91 Aligned_cols=177 Identities=9% Similarity=-0.000 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhh-HHh--hhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT-FTS--LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~--ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
..+......+...|++++|+..|++..+. .|+... +.. +-.........+..+..+|.+.|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445566778999999999999999885 343221 111 1111122234455688899999999999999999988
Q ss_pred CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHH
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK--MDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~ 226 (256)
..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..+|...|+ ...+...+..... ..|...
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 7544 77889999999999999999999999999874 3467788888888866654 4455566655542 233333
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
.+.....++...|++++|...|++..+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4555566777889999999999988754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-09 Score=77.40 Aligned_cols=144 Identities=13% Similarity=0.052 Sum_probs=109.6
Q ss_pred hhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...+..++....++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.+++|.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344444433345566667888999999999999999999877654 236778889999999999999999999999886
Q ss_pred CCCC-----cHHHHHHHHHHH--HhcC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 185 GVQP-----NVVTFNVIMDEL--CKNG--KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 185 ~~~~-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.| +..+...++.++ ...| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56 356666666563 3334 899999999999765 45534444455589999999999999987654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-09 Score=79.66 Aligned_cols=220 Identities=11% Similarity=0.029 Sum_probs=176.6
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC--ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHH----Hhc---
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK--HYDTVLSLFKRLNSTGLFPDLYTHSILINCF----CKM--- 84 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 84 (256)
...++|+.+++.++..+|. +..+|+.--..+...+ ++++++..++.+.... +-+..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3446899999999998876 7778998888888888 9999999999998875 23556676665555 555
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD--KAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
+++++++.+++++.+. .+.+-.+|+.-.-.+.+.|.++ +++..++.+.+..+. |..+|+...
T Consensus 124 ~~~~~EL~~~~~~l~~---------------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~ 187 (306)
T 3dra_A 124 FDPYREFDILEAMLSS---------------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRF 187 (306)
T ss_dssp CCTHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 7888999999999874 2457778888888888888888 999999999988765 777888777
Q ss_pred HHHhccCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHHhHHHHHH
Q 047518 163 RGFCYAND------WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE-ASSLLDLMIQHG--VRPDAFTYNTLLD 233 (256)
Q Consensus 163 ~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~ 233 (256)
......+. ++++++.+++++... +-|...|+..-..+.+.|+... +..+..++.+.+ -+.+...+..++.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 77777776 899999999999875 4588899999888988888544 555666655432 1447788999999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047518 234 GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~ 253 (256)
.|.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-10 Score=83.51 Aligned_cols=173 Identities=8% Similarity=-0.043 Sum_probs=133.9
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
.+...+..+...+.+.|++++|+..|+++.+.. |+. +....++..+..+|.+.|++++|...|+...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~----------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTH----------EWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCS----------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCC----------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 356677788889999999999999999999852 211 01156788889999999999999999999988
Q ss_pred CCCC--CchHHHHHHHHHHhc--------cCCHHHHHHHHHHHHHcCCCCcHHHH-----------------HHHHHHHH
Q 047518 149 KNVK--PNVVTYTSVIRGFCY--------ANDWNEAKRLFIEMMDQGVQPNVVTF-----------------NVIMDELC 201 (256)
Q Consensus 149 ~~~~--~~~~~~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~ 201 (256)
..+. ....++..+..++.. .|++++|...++++.+.... +.... ..+..+|.
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6331 234567777788888 99999999999999986322 22223 55678899
Q ss_pred hcCChhHHHHHHHHHHHCCCC-C-CHHhHHHHHHHHHhc----------CChhHHHHHHHHHHhc
Q 047518 202 KNGKMDEASSLLDLMIQHGVR-P-DAFTYNTLLDGFCLT----------GRVNHAKELFVSMESM 254 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 254 (256)
..|++++|...|+.+.+.... + ....+..+..+|... |++++|...++++.+.
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999875211 1 345778888888866 8899999999988753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=82.84 Aligned_cols=144 Identities=10% Similarity=-0.040 Sum_probs=75.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+.+.|++++|+..++......|. +...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 44555666666666666665443322 33445556666666666666666666665543 2245566666666666666
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCchHHHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL-FLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
+++|+..|++.++.. +.+..+|..+...|.+.|++++|... +++..+..+. +..+|......+
T Consensus 81 ~~~A~~~~~~al~~~---------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll 144 (150)
T 4ga2_A 81 TDKAVECYRRSVELN---------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHH
Confidence 666666666665531 22344555556666666665544433 3444443222 344444444444
Q ss_pred hccC
Q 047518 166 CYAN 169 (256)
Q Consensus 166 ~~~~ 169 (256)
...|
T Consensus 145 ~~~G 148 (150)
T 4ga2_A 145 DCEG 148 (150)
T ss_dssp HTCC
T ss_pred HHhC
Confidence 4333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.5e-11 Score=95.87 Aligned_cols=154 Identities=9% Similarity=-0.049 Sum_probs=118.8
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.|++++|+..|++..+..+. +...|..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 57899999999999887664 77889999999999999999999999998874 3467789999999999999999999
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc---C
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA---N 169 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~ 169 (256)
.+++..+.. +.+...+..+..+|.+.|++++|...|++..+.... +...+..+...+... |
T Consensus 79 ~~~~al~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 79 LLQQASDAA---------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp HHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHhcC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccc
Confidence 999998852 345678889999999999999999999999887543 677888899999999 9
Q ss_pred CHHHHHHHHHHHHHcC
Q 047518 170 DWNEAKRLFIEMMDQG 185 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~ 185 (256)
+.++|...+++..+.+
T Consensus 143 ~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQG 158 (568)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcC
Confidence 9999999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.5e-12 Score=85.95 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=95.4
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
..+......+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..++++.+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------- 70 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--------------- 70 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---------------
Confidence 345556666667777777777777665542 2245566667777777777777777776655431
Q ss_pred CCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-cHHHHH
Q 047518 117 KPDAITYNTIIDG-LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP-NVVTFN 194 (256)
Q Consensus 117 ~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 194 (256)
|+...+..+... +...+....|...+++..+..+. +...+..+...+...|++++|...++++.+....+ +...+.
T Consensus 71 -p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 71 -QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp -CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred -CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 122111111111 11222223456666666655332 45666667777777777777777777777654322 244666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.+..++...|+.++|...|++..
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHH
Confidence 77777777777777777776654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-10 Score=79.00 Aligned_cols=177 Identities=11% Similarity=-0.025 Sum_probs=144.8
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh
Q 047518 53 DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~ 132 (256)
.+|.+.|++..+.| +...+..+...|...+++++|+.+|++..+.| ++..+..|...|..
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----------------~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----------------DGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHc
Confidence 35778888888765 67788889999999999999999999998853 45667778888888
Q ss_pred cC----CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHh-
Q 047518 133 QG----FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCK- 202 (256)
Q Consensus 133 ~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~- 202 (256)
+ ++++|...|++..+.| +..++..+-..|.. .+++++|..++++..+.+.. .+...+..+...|..
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 7 9999999999998875 56677778888877 88999999999999987532 126788888888988
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcC
Q 047518 203 ---NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT-G-----RVNHAKELFVSMESMG 255 (256)
Q Consensus 203 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g 255 (256)
.+++++|...|++..+. ..+...+..|...|... | +.++|..++++..+.|
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88999999999999886 23455677777787653 3 8999999999988776
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.8e-11 Score=88.60 Aligned_cols=199 Identities=11% Similarity=0.007 Sum_probs=141.4
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCC---CC-CcccHHHHHHHHHccCChHHHHHHHHHHhhC----CCCC-CHhhHHHHHH
Q 047518 9 GDITTITPNEALCIFDYMLRMHPS---PP-PVSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFP-DLYTHSILIN 79 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 79 (256)
.|...|++++|+..|++.....+. ++ ...+|+.+...|.+.|++++|+..+++..+. |-.. -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455678999999999987765221 01 2467899999999999999999999987653 2111 1357888999
Q ss_pred HHHhc-CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch---
Q 047518 80 CFCKM-GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV--- 155 (256)
Q Consensus 80 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 155 (256)
+|... |++++|+..|++.++..-..+.. .....++..+...+.+.|++++|+..|++..........
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 99996 99999999999988741000000 001346788899999999999999999999886543222
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHH--hcCChhHHHHHHHHHHH
Q 047518 156 ---VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN------VVTFNVIMDELC--KNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 156 ---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 218 (256)
..|..+..++...|++++|...+++..+. .|+ ...+..++.++. ..+++++|...|+.+..
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 15677788899999999999999998764 232 123445566664 44567777777766543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-10 Score=98.07 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=148.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+...|.+++|..+|++.. . .....+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~----~--~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD----V--NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC----C--HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 455678899999999999962 1 2223344433 7788999999998652 46789999999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (256)
+++|+..|.+. .|...|..++.++.+.|++++|.+.|....+....|.. .+.++.+|+
T Consensus 1121 ~kEAIdsYiKA--------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I--dt~LafaYA 1178 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHhc--------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc--cHHHHHHHH
Confidence 99999999553 35667788999999999999999999987776433233 335888888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
+.+++++...++ + .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+
T Consensus 1179 Kl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1179 KTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 888888644442 2 346667777888888999999999988874 368888888888888888888
Q ss_pred HHHHHH
Q 047518 247 LFVSME 252 (256)
Q Consensus 247 ~~~~m~ 252 (256)
.+++..
T Consensus 1243 aarKA~ 1248 (1630)
T 1xi4_A 1243 GARKAN 1248 (1630)
T ss_pred HHHHhC
Confidence 877653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-10 Score=85.69 Aligned_cols=222 Identities=9% Similarity=-0.016 Sum_probs=155.2
Q ss_pred CCcCChhhHHHHHHHHHHhCCC-----CCCc----ccHHHHHHHHHccCChHHHHHHHHHHhhC----CCCC-CHhhHHH
Q 047518 11 ITTITPNEALCIFDYMLRMHPS-----PPPV----SSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFP-DLYTHSI 76 (256)
Q Consensus 11 ~~~g~~~~a~~~~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ 76 (256)
++.|++++|.+++++..+..+. .++. ..|+.....|...|++++|...|.+..+. +-.+ -..+|..
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567888999999887664321 1221 24667778888999999999999987543 2111 1357888
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 047518 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK 152 (256)
Q Consensus 77 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 152 (256)
+..+|...|++++|+..|++.++....... ......++..+...|.. |++++|+..|++.... +..
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGT---------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 999999999999999999998763111000 00123467788889988 9999999999987653 111
Q ss_pred C-chHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--
Q 047518 153 P-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-- 224 (256)
Q Consensus 153 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 224 (256)
+ ...++..+...|...|++++|...+++..+. +..+. ...+..+..++...|++++|...|++.. . .|+
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~ 228 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTST
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCC
Confidence 1 1467888899999999999999999998853 21122 2366777778888899999999999988 4 232
Q ss_pred ----HHhHHHHHHHHHhcCChhHHHH
Q 047518 225 ----AFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 225 ----~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
......++.++ ..|+.+.+.+
T Consensus 229 ~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 229 GSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 12344555555 5677766655
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-10 Score=84.15 Aligned_cols=168 Identities=8% Similarity=-0.004 Sum_probs=133.0
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (256)
+.+...+..+...+.+.|++++|...|+++.+. .+.+...+..+...+...|++++|...++++.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---------------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 445567778888899999999999999999874 23467788889999999999999999999987
Q ss_pred hCCCCCchH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCH
Q 047518 148 DKNVKPNVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR-PDA 225 (256)
Q Consensus 148 ~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~ 225 (256)
.... +.. ........+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+.... .+.
T Consensus 179 ~~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 LQDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp GGGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred hhhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 7643 333 22223334667788888999999988874 446788999999999999999999999999875311 125
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 226 FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..+..++..+...|+.++|...+++...
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 6789999999999999999998887653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-09 Score=77.86 Aligned_cols=169 Identities=10% Similarity=-0.035 Sum_probs=111.7
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+.+.|++++|+..|+++.+.. |+. +.....+..+..+|.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~----------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFG----------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTS----------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 3445556666777777777777777777641 110 0112455666777777788888888777776653
Q ss_pred CCCch--HHHHHHHHHHh------------------ccCCHHHHHHHHHHHHHcCCCCcH-HHH----------------
Q 047518 151 VKPNV--VTYTSVIRGFC------------------YANDWNEAKRLFIEMMDQGVQPNV-VTF---------------- 193 (256)
Q Consensus 151 ~~~~~--~~~~~li~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~-~~~---------------- 193 (256)
+.... .++..+..++. ..|++++|...++++.+.. |+. ..+
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHH
Confidence 32111 13333333333 2567888888888887752 321 111
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 194 -NVIMDELCKNGKMDEASSLLDLMIQHGVRPD----AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 194 -~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
..+...+.+.|++++|...|+.+.+. .|+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 34566788999999999999999875 233 2568888999999999999999999887764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-10 Score=78.95 Aligned_cols=164 Identities=11% Similarity=0.035 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..+......+.+.|++++|+..|+++.+. .+.+...+..+..++...|++++|...++.......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE---------------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH---------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 34566777889999999999999987763 245677899999999999999999999999876543
Q ss_pred CCchHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHhHH
Q 047518 152 KPNVVTYTSVIRG-FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP-DAFTYN 229 (256)
Q Consensus 152 ~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 229 (256)
+...+...... +...+....+...+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+.
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 72 --DNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp --CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred --ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 33333222211 122233345788899988764 3357889999999999999999999999999864222 356888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 047518 230 TLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+...+...|+.++|...+++...
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999988764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-10 Score=82.19 Aligned_cols=180 Identities=10% Similarity=0.064 Sum_probs=132.8
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcC
Q 047518 55 VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134 (256)
Q Consensus 55 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~ 134 (256)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+-.+ .+...+..++..+.+.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-------------~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE-------------GTTELLLLAIEVALLNN 150 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------------THHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------------CcHHHHHHHHHHHHHCC
Confidence 677777777665 4566666788899999999999999999987653211 24556777889999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-----chHHHHHHHHHH--hccC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 135 FVDKAKELFLKMKDKNVKP-----NVVTYTSVIRGF--CYAN--DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
+++.|.+.++.|.+. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|+
T Consensus 151 r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~ 226 (310)
T 3mv2_B 151 NVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN 226 (310)
T ss_dssp CHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC
Confidence 999999999999876 44 355566666663 3334 899999999999776 3553333444458999999
Q ss_pred hhHHHHHHHHHHHC-----C----CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 206 MDEASSLLDLMIQH-----G----VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 206 ~~~a~~~~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
+++|.+.++.+.+. + -+.++.+...+|......|+ +|.++++++.+.
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 99999999976642 1 13356677677766667787 788999888764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.9e-10 Score=91.36 Aligned_cols=154 Identities=11% Similarity=0.000 Sum_probs=118.6
Q ss_pred cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 047518 84 MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (256)
.|++++|+..++++.+. .+.+...|..+...|...|++++|...|++..+.... +...+..+..
T Consensus 2 ~g~~~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---------------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGR 65 (568)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46788899999888764 1345678889999999999999999999999987543 6788999999
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc---CC
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT---GR 240 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 240 (256)
+|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999874 3467889999999999999999999999998763 44678899999999999 99
Q ss_pred hhHHHHHHHHHHhcC
Q 047518 241 VNHAKELFVSMESMG 255 (256)
Q Consensus 241 ~~~a~~~~~~m~~~g 255 (256)
.++|.+.+++..+.+
T Consensus 144 ~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-09 Score=77.11 Aligned_cols=169 Identities=11% Similarity=0.071 Sum_probs=101.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCC-C-CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-P-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
+..+...+.+.|++++|+..|+.+.+.... | ....+..+..++.+.|++++|+..|+++.+.. |+...
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~-------- 76 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPN-------- 76 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTT--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCc--------
Confidence 344444555555555555555555543211 1 12344555555555555555555555555431 11000
Q ss_pred CCCHHHHHH------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH-----------------HHH
Q 047518 117 KPDAITYNT------------------IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY-----------------TSV 161 (256)
Q Consensus 117 ~~~~~~~~~------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l 161 (256)
-..++.. +...+...|++++|...|+++.+..+. +..++ ..+
T Consensus 77 --~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 77 --IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSV 153 (225)
T ss_dssp --HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001122 222334578899999999999886432 22222 234
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
...+.+.|++++|...++++.+...... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 5667889999999999999998732211 3568889999999999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-10 Score=89.61 Aligned_cols=127 Identities=14% Similarity=0.066 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCCCc
Q 047518 117 KPDAITYNTIIDGLCKQG---FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA----NDWNEAKRLFIEMMDQGVQPN 189 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~ 189 (256)
..++..+..|...|...| ++++|+..|....+.|.. +...+..+...|... +++++|..+++... .| +
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~ 247 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---Y 247 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---S
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---C
Confidence 344557777888888888 888888888888887753 454445566666544 68888888888877 33 3
Q ss_pred HHHHHHHHHH-H--HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-----ChhHHHHHHHHHH
Q 047518 190 VVTFNVIMDE-L--CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG-----RVNHAKELFVSME 252 (256)
Q Consensus 190 ~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~ 252 (256)
...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|.++|++..
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 4455555555 3 46788888888888888776 6667777777776 45 8888888887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-10 Score=77.72 Aligned_cols=132 Identities=12% Similarity=0.121 Sum_probs=107.4
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHH-
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC- 80 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 80 (256)
++.+.+..+...|++++|+..|++.....|. +...|..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l 88 (177)
T 2e2e_A 12 RQRDPLHQFASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVL 88 (177)
T ss_dssp CSSTTTCCCC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred HHhhhhhhhhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4667788899999999999999999987765 77889999999999999999999999998764 3366778888888
Q ss_pred HHhcCCc--chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 81 FCKMGRV--SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 81 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
+...|++ ++|...++++.+.. +.+...+..+...|...|++++|...|....+...
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALD---------------SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHhcCCcchHHHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 7788998 99999999988752 34566788889999999999999999999888743
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=77.88 Aligned_cols=121 Identities=6% Similarity=-0.050 Sum_probs=57.1
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHH
Q 047518 45 CLAKNKHYDTVLSLFKRLNSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123 (256)
Q Consensus 45 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 123 (256)
.+...|++++|+..++..... .| +...+..+...|.+.|++++|+..|++.++. .+.+..+|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---------------~p~~~~a~ 68 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---------------QERDPKAH 68 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHH
Confidence 344445555555555554433 12 2223444555555555555555555555542 12234445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHH-HHHHHH
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL-FIEMMD 183 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~ 183 (256)
..+..+|.+.|++++|...|++..+..+. +..++..+...|.+.|+++++... +++..+
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555555555555555555444322 344444455555555554443332 344444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-09 Score=82.51 Aligned_cols=189 Identities=9% Similarity=-0.015 Sum_probs=127.6
Q ss_pred ccHHHHHHHHHccC---ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc----CCcchHHHHHHHHHhcCCCCchhhH
Q 047518 37 SSFNIMLGCLAKNK---HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM----GRVSHGFVVLGRILRSCFTPDVVTF 109 (256)
Q Consensus 37 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~ 109 (256)
..+..+...|...| +.++|++.|+...+.| .++...+..+...|... +++++|+.+|++.. .
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~--------- 245 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P--------- 245 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---------
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---------
Confidence 36666777777777 6777777777777666 33444445555555443 56677777777765 2
Q ss_pred HhhhhhcCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-----CHHHHHHHHHHH
Q 047518 110 TSLIKVCKPDAITYNTIIDG-L--CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-----DWNEAKRLFIEM 181 (256)
Q Consensus 110 ~~ll~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~ 181 (256)
.++..+..|... | ...+++++|...|++..+.| +...+..+-..|. .| ++++|..+|++.
T Consensus 246 --------g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 246 --------GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp --------GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred --------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 234455566665 4 46788899999998888776 5556666666665 45 888888888887
Q ss_pred HHcCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 047518 182 MDQGVQPNVVTFNVIMDELCK----NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMES 253 (256)
Q Consensus 182 ~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 253 (256)
. .| +...+..+...|.. ..++++|...|+...+.|. ......|...|.. ..+.++|..+++...+
T Consensus 314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7 33 55666666666665 3488889999988887763 3445556666653 4578888888888776
Q ss_pred cC
Q 047518 254 MG 255 (256)
Q Consensus 254 ~g 255 (256)
.|
T Consensus 387 ~g 388 (452)
T 3e4b_A 387 QD 388 (452)
T ss_dssp TC
T ss_pred CC
Confidence 65
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-09 Score=83.67 Aligned_cols=201 Identities=10% Similarity=0.019 Sum_probs=148.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCC-CC----CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 41 IMLGCLAKNKHYDTVLSLFKRLNSTGL-FP----DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 41 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
.....+...|++++|+..|++..+... .+ ...++..+..+|...|+++.|...+++..+........
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-------- 177 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-------- 177 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------
Confidence 345566789999999999999875421 12 23578889999999999999999999987631110000
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cC
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-----QG 185 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~ 185 (256)
......+++.+...|...|++++|...|.+..+. +.. ....++..+...|...|++++|...+++..+ ..
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 0012456788999999999999999999987652 211 1235678888999999999999999999886 42
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHH
Q 047518 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH----GVRPDAFTYNTLLDGFCLTGR---VNHAKELFVS 250 (256)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 250 (256)
+....++..+...+.+.|++++|...+++..+. +.+.....+..+...|...++ ..+|+..+++
T Consensus 258 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 258 -DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp -GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 334678889999999999999999999998763 112223455666667777788 7777777665
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-09 Score=80.72 Aligned_cols=167 Identities=13% Similarity=0.019 Sum_probs=134.9
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++++... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~---------- 181 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--D---------- 181 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--G----------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--h----------
Confidence 456678888899999999999999999998774 336678999999999999999999999988764 1
Q ss_pred hhcCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-cHH
Q 047518 114 KVCKPDAIT-YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP-NVV 191 (256)
Q Consensus 114 ~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 191 (256)
|+... .......+...++.++|...+++.....+ .+...+..+...+...|++++|...++++.+..... +..
T Consensus 182 ----p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 182 ----QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ----CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ----cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 23222 22233446777888889999999888754 377888999999999999999999999999874322 267
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 192 TFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+..++..+...|+.++|...+++...
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 899999999999999999999887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-09 Score=73.16 Aligned_cols=127 Identities=13% Similarity=0.022 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 201 (256)
.+..+...+...|++++|...|.+.. .|+..++..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45567788899999999999999874 5578899999999999999999999999999874 446788999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC----------------HHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 202 KNGKMDEASSLLDLMIQHGVRPD----------------AFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..|++++|...|+...+.. +.+ ...+..+..+|.+.|++++|.+.+++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999998753 222 267888999999999999999999988764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-08 Score=71.82 Aligned_cols=129 Identities=11% Similarity=-0.009 Sum_probs=104.2
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
.+..+...+...|++++|...|++.. .|+...|..+..++...|++++|+..+++..+.. +
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------~ 68 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---------------K 68 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------T
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------c
Confidence 35566778888999999999998774 5577888999999999999999999999888742 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------chHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP---------------NVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
.+...|..+..+|...|++++|...|+...+..... ....+..+..++...|++++|...++...
T Consensus 69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 456678888899999999999999999888753221 22677888888899999999999999988
Q ss_pred HcC
Q 047518 183 DQG 185 (256)
Q Consensus 183 ~~~ 185 (256)
+..
T Consensus 149 ~~~ 151 (213)
T 1hh8_A 149 SMK 151 (213)
T ss_dssp TTC
T ss_pred HcC
Confidence 764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-07 Score=70.95 Aligned_cols=171 Identities=9% Similarity=-0.005 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 047518 74 HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK- 152 (256)
Q Consensus 74 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 152 (256)
+...+..+...|++++|...+++..+.... +.. .... ...+..+...+...+++++|+..|++.......
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~-~~~~-------~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPE-FQQF-------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCC-CHH-HHHH-------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccC-ChH-HHHH-------HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence 334467788999999999999999874211 110 0000 123445777888889999999999999874322
Q ss_pred Cc----hHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHH----
Q 047518 153 PN----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----GVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQ---- 218 (256)
Q Consensus 153 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---- 218 (256)
++ ..+++.+...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++..+
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22 236889999999999999999999998841 11222 34788999999999999999999998764
Q ss_pred CCCCCC-HHhHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 047518 219 HGVRPD-AFTYNTLLDGFCLTGR-VNHAKELFVSMES 253 (256)
Q Consensus 219 ~~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~ 253 (256)
.+..+. ..+|..+..+|.+.|+ +++|.+.+++..+
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 222233 5688999999999995 6999999887653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.6e-09 Score=69.43 Aligned_cols=130 Identities=10% Similarity=-0.010 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
...+..+...+...|++++|...|......... +..++..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 446777888999999999999999998876533 67888889999999999999999999999874 4467889999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCChhHHHHHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYN--TLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+...|++++|...+++..+.. +.+...+. ..+..+...|++++|++.+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999998753 33555553 34444778899999999988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.6e-09 Score=79.47 Aligned_cols=194 Identities=9% Similarity=-0.077 Sum_probs=138.7
Q ss_pred cCChHHHHHHHHHHhhC------CCCCCH----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCC
Q 047518 49 NKHYDTVLSLFKRLNST------GLFPDL----YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~------~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 118 (256)
.|++++|.+++++..+. +..++. ..|......|...|++++|...|.+..+...... ....
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~ 74 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR---------SLFH 74 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------CHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---------CHHH
Confidence 46677787777766431 112332 3577777888899999999999998876311000 0001
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CC--
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV---QP-- 188 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~-- 188 (256)
-..+|+.+...|...|++++|+..|++.... |-.. ...++..+...|.. |++++|+..+++..+... .+
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 2347888899999999999999999986543 2111 24577888888988 999999999999875311 11
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQH----GVRPD-AFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
...++..+...+...|++++|...|++..+. +..+. ...+..+..++...|++++|...+++..
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1467888999999999999999999988752 21111 2366677778888899999999998865
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-09 Score=76.28 Aligned_cols=197 Identities=10% Similarity=-0.035 Sum_probs=140.4
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHH-------HHHHHccCChHHHHHHHHHHhhCCCCCC--------------
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIM-------LGCLAKNKHYDTVLSLFKRLNSTGLFPD-------------- 70 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 70 (256)
..++++.|.+.|.++.+..|. ....|..+ ...+...++..+++..++.-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccc
Confidence 579999999999999998876 66678877 46666666666666666655441 221
Q ss_pred --------HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047518 71 --------LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142 (256)
Q Consensus 71 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (256)
...+-.....+...|++++|.+.|+.+...+ | +......+...+.+.++|++|+..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p--------------~~~~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--S--------------EHLVAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--C--------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C--------------chHHHHHHHHHHHHcCCHHHHHHH
Confidence 1233446677888999999999998877642 2 222445556688999999999999
Q ss_pred HHHHHhCCCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 143 FLKMKDKNVKPN--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 143 ~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
|....... .|. ...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 158 l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 158 VKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98655432 121 34667778889999999999999999885433243 34667777888999999999999999988
Q ss_pred CCCCCCHHhHHHH
Q 047518 219 HGVRPDAFTYNTL 231 (256)
Q Consensus 219 ~~~~~~~~~~~~l 231 (256)
. .|+...+..|
T Consensus 237 ~--~P~~~~~~aL 247 (282)
T 4f3v_A 237 T--HPEPKVAAAL 247 (282)
T ss_dssp H--SCCHHHHHHH
T ss_pred c--CCcHHHHHHH
Confidence 5 4554444444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-08 Score=81.54 Aligned_cols=230 Identities=10% Similarity=-0.005 Sum_probs=169.0
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHH-HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVL-SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 95 (256)
+++..+|++.+...+. ....|...+..+.+.|+.+.|. .++++.... .+.+...|-..+...-+.|+++.|..+|+
T Consensus 326 ~Rv~~~Ye~aL~~~p~--~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF--APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4566789888887665 7778999999999999999997 999999864 34456667778888889999999999999
Q ss_pred HHHhcCC---------CCchhhHHhhhhhcC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 96 RILRSCF---------TPDVVTFTSLIKVCK-PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 96 ~~~~~~~---------~~~~~~~~~ll~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
++++... .|+.. .-+..+. ....+|...+....+.|+.+.|..+|....+.-.......|...+..-
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~---~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNE---SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhccCcch---hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9887410 01000 0000000 123468888888889999999999999998761112334444333332
Q ss_pred hcc-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCChh
Q 047518 166 CYA-NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP--DAFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 166 ~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 242 (256)
.+. ++.+.|..+|+...+. .+-+...|...+......|+.+.|..+|+........+ ....|...+..=.+.|+.+
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 333 5589999999999986 34466778888888889999999999999998763221 3457888888888999999
Q ss_pred HHHHHHHHHHh
Q 047518 243 HAKELFVSMES 253 (256)
Q Consensus 243 ~a~~~~~~m~~ 253 (256)
.+.++.+++.+
T Consensus 559 ~~~~v~~R~~~ 569 (679)
T 4e6h_A 559 SVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.6e-08 Score=72.37 Aligned_cols=221 Identities=12% Similarity=0.067 Sum_probs=166.0
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC-ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-C-Ccch
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM-G-RVSH 89 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 89 (256)
.+..++|+++++.++..+|. +..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-..++... + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34557899999999998876 7788998888888888 5999999999999875 33677888887777776 6 8889
Q ss_pred HHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCchHHHHHH
Q 047518 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD--------KAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
++.+++++++.. +.+-.+|+.-.-.+.+.|.++ +++..++++.+..+. |..+|+..
T Consensus 144 EL~~~~k~L~~d---------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R 207 (349)
T 3q7a_A 144 EIEYIHGSLLPD---------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWR 207 (349)
T ss_dssp HHHHHHHHTSSC---------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 999999988752 345666666555555555555 899999999888665 77888888
Q ss_pred HHHHhccCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh--------------------hHHHHHHH
Q 047518 162 IRGFCYAND-------WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM--------------------DEASSLLD 214 (256)
Q Consensus 162 i~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~ 214 (256)
...+.+.+. ++++++.+++.+... +-|...|+.+-..+.+.|+. .....+..
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 888877776 688999999988875 44788888877777777764 22222222
Q ss_pred HHHHCC-----CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 215 LMIQHG-----VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 215 ~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
++...+ -.++......++..|...|+.++|.++++.+.+
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 332221 136778889999999999999999999999864
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.08 E-value=8.7e-09 Score=68.77 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
+.+...+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|...+++..+.. +.+...|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 345567888889999999999999999999987543 78889999999999999999999999999875 3367789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
..+|...|++++|...|+...+. .|+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999999999885 45554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-08 Score=65.14 Aligned_cols=111 Identities=9% Similarity=0.010 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
...+......|.+.|++++|+..|++..+..+. +..+|..+..++...|++++|+..+++.++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 346777889999999999999999999887543 78889999999999999999999999999875 3467889999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...|++++|.+.|++..+.. +-+...+..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 999999999999999998853 335555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-08 Score=63.13 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
...+..+...+...|++++|...+.++..... .+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 55778888999999999999999999987643 367788889999999999999999999999874 4467888999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (256)
+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999998753 34566666666665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-10 Score=84.78 Aligned_cols=143 Identities=13% Similarity=-0.002 Sum_probs=76.8
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC--------------HhhHHHHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD--------------LYTHSILIN 79 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 79 (256)
+++++|+..|+......+. +...|..+...+.+.|++++|+..|++..+...... ...|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444333222 455677777777777777777777777766531111 245555555
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 047518 80 CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159 (256)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (256)
+|.+.|++++|+..++++++.. +.+..+|..+..+|...|++++|...|++..+.... +...+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~ 268 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD---------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKT 268 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHH
Confidence 5555555555555555555431 223444555555555555555555555555544322 344455
Q ss_pred HHHHHHhccCCHHHH
Q 047518 160 SVIRGFCYANDWNEA 174 (256)
Q Consensus 160 ~li~~~~~~~~~~~a 174 (256)
.+..++...|+.+++
T Consensus 269 ~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-08 Score=65.22 Aligned_cols=120 Identities=8% Similarity=-0.006 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
+.+...+..+...+...|++++|...|++....... +...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 456678888999999999999999999999887533 67888999999999999999999999999874 3467889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (256)
..++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999988753 234556677777766655
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-08 Score=64.95 Aligned_cols=120 Identities=12% Similarity=0.000 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+...+..+...+...|++++|...|++...... .+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 455778888999999999999999999887643 367788889999999999999999999999874 345778899999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
++...|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998763 44677888888888887765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-08 Score=76.48 Aligned_cols=133 Identities=10% Similarity=-0.040 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--------------hHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--------------VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+...+..+...|.+.|++++|...|++......... ..+|..+..+|.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999999987654322 578999999999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA-KELFVSMES 253 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 253 (256)
. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++| ..++++|.+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4478899999999999999999999999998863 44678899999999999999998 456776653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-09 Score=77.40 Aligned_cols=166 Identities=13% Similarity=0.040 Sum_probs=117.6
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCChHHHHHHHHHHhhCCCC-CC----HhhHHHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPV----SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PD----LYTHSILI 78 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~ 78 (256)
..+...|++++|...+++.....+..++. ..+..+...+...++++.|+..+++....... ++ ..+++.+.
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 44567899999999999998755432332 12335777777888999999999999874322 22 23689999
Q ss_pred HHHHhcCCcchHHHHHHHHHhcC--CCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 047518 79 NCFCKMGRVSHGFVVLGRILRSC--FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK 152 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 152 (256)
.+|...|++++|+.+|+++.+.- ...+. .....++..+...|.+.|++++|...+++..+. +..
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNE----------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccch----------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999988520 00010 112346778888888999999999888876542 211
Q ss_pred C-chHHHHHHHHHHhccCC-HHHHHHHHHHHHH
Q 047518 153 P-NVVTYTSVIRGFCYAND-WNEAKRLFIEMMD 183 (256)
Q Consensus 153 ~-~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~ 183 (256)
+ -..+|..+..++...|+ +++|...+++...
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1 25677777788888884 5888887777653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-07 Score=69.60 Aligned_cols=172 Identities=8% Similarity=-0.049 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..+...+..+...|++++|...+.+..+..... .... .....+..+...+...|++++|...+.+......
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-PEFQ--------QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC-HHHH--------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC-hhHH--------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 345566778889999999999999888753221 1110 1122344567778889999999999998875422
Q ss_pred C---Cc--hHHHHHHHHHHhccCCHHHHHHHHHHHH---HcC-CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 047518 152 K---PN--VVTYTSVIRGFCYANDWNEAKRLFIEMM---DQG-VQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQH- 219 (256)
Q Consensus 152 ~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 219 (256)
. +. ..+|+.+...|...|++++|...+++.. +.. ..+ ...++..+..+|...|++++|...+++..+.
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 11 4578889999999999999999999987 321 111 1258889999999999999999999987642
Q ss_pred ---CCCC-CHHhHHHHHHHHHhcCChhHH-HHHHHHHH
Q 047518 220 ---GVRP-DAFTYNTLLDGFCLTGRVNHA-KELFVSME 252 (256)
Q Consensus 220 ---~~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 252 (256)
+... -..+|..+..+|.+.|+.++| ...+++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2111 256788999999999999999 77677654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=80.37 Aligned_cols=194 Identities=9% Similarity=-0.000 Sum_probs=108.8
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
+...+..+...+.+.|++++|+..|+...+.. +.+...|..+..++...|++++|+..++++.+. .
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~----------- 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--D----------- 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--C-----------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C-----------
Confidence 45567777777788888888888888777653 235667777777888888888888888777764 1
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
+.+...+..+..+|...|++++|...|....+.... +...+...+....+ ..++.. +..........+.....
T Consensus 69 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~ 141 (281)
T 2c2l_A 69 --GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHS 141 (281)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHH
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHH
Confidence 234566777777888888888888888776654210 00011111111111 111111 11122222333333333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAF-TYNTLLDGFCLT-GRVNHAKELFVSMES 253 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 253 (256)
.+.. + ..|+.++|.+.++...+. .|+.. ....+...+.+. +.+++|.++|++..+
T Consensus 142 ~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 142 YLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3322 2 257777777777766654 34433 333333333333 556777777766543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.5e-08 Score=65.65 Aligned_cols=130 Identities=8% Similarity=-0.032 Sum_probs=105.7
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...+.+.....
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 77 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN---------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 77 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3467778888999999999999999988742 3456788889999999999999999999998875
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHhcCChhHHHHHHHHHH
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF--NVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
. .+..++..+..++...|++++|...+++..+... .+...+ ...+..+...|++++|...+....
T Consensus 78 ~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 78 K-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 3 3677888999999999999999999999998642 244455 334444778899999999988765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-07 Score=69.16 Aligned_cols=170 Identities=12% Similarity=0.065 Sum_probs=125.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCC-----HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-----LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
+...+..+...|++++|.+.++...+...... ...+..+...+...|++++|+..+++..+........
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~------ 151 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV------ 151 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch------
Confidence 44567778899999999999998876532211 1234456667788899999999999988643221100
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD---K-NVKP--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-- 185 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-- 185 (256)
.....+++.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|...+++..+..
T Consensus 152 ---~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 152 ---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp ---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 00134788999999999999999999998862 2 1111 12588889999999999999999999987531
Q ss_pred --CCC-cHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 047518 186 --VQP-NVVTFNVIMDELCKNGKMDEA-SSLLDLMI 217 (256)
Q Consensus 186 --~~~-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~ 217 (256)
... -..+|..+..++...|++++| ...+++..
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111 167788999999999999999 77777665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-08 Score=71.04 Aligned_cols=161 Identities=11% Similarity=0.007 Sum_probs=86.4
Q ss_pred ccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHH
Q 047518 48 KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127 (256)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~ 127 (256)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+.....+. .+....++..+.
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~ 73 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVG 73 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHH
Confidence 345555555533333221 1123345555555556666666666666555442100000 011233455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCc--HHHHHHH
Q 047518 128 DGLCKQGFVDKAKELFLKMKDK----NVKP--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPN--VVTFNVI 196 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l 196 (256)
..|...|++++|...+.+.... +..| ....+..+...+...|++++|...+++..... ..+. ..++..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 6677777777777777665432 2111 23456666677777788888888777766321 1111 2345667
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 047518 197 MDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~ 218 (256)
...+...|++++|.+.+++..+
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHH
Confidence 7777888888888888776653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-08 Score=71.30 Aligned_cols=157 Identities=12% Similarity=0.053 Sum_probs=114.2
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CchH
Q 047518 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK-PNVV 156 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 156 (256)
...|++++|.+.++.+... | .....++..+...+...|++++|...+++.... +.. ....
T Consensus 3 ~~~g~~~~A~~~~~~~~~~---~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 67 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH---P------------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR 67 (203)
T ss_dssp ----CHHHHHHHHHHHHTS---T------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC---h------------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 4578889999865555331 1 123557888899999999999999999987652 222 2346
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCC-CH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQ----HGVRP-DA 225 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~ 225 (256)
++..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+ .+..+ ..
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 7788888999999999999999987753 2122 245678888999999999999999998763 22111 12
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 226 FTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.++..+...+...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3467888899999999999999887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-08 Score=64.07 Aligned_cols=96 Identities=11% Similarity=-0.020 Sum_probs=45.2
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
.+......+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.++.. +
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------------p 78 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---------------S 78 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---------------h
Confidence 34444445555555555555555544432 2234444445555555555555555555444421 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.+...|..+..+|...|++++|...|++..+.
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23334444445555555555555555544443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-08 Score=73.39 Aligned_cols=201 Identities=9% Similarity=-0.093 Sum_probs=141.7
Q ss_pred ccCChHHHHHHHHHHhhCCCCCCHhhHHHH-------HHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhh-------h
Q 047518 48 KNKHYDTVLSLFKRLNSTGLFPDLYTHSIL-------INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-------I 113 (256)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l 113 (256)
+.++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..++.... +.|+......- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 6899999999999998874 2345677777 4555555555566555544443 34433222111 0
Q ss_pred hhc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--H
Q 047518 114 KVC-KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--V 190 (256)
Q Consensus 114 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 190 (256)
... ..-...+..+...+...|++++|..+|..+...+ |+....-.+...+.+.+++++|+..++...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 001 1113345667788999999999999999988765 343355555667889999999999998665432 221 3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047518 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 254 (256)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4778889999999999999999999986433254 346777788999999999999999998764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-07 Score=67.35 Aligned_cols=199 Identities=8% Similarity=-0.006 Sum_probs=154.6
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHH----Hcc---CChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCL----AKN---KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
.++++++..++.+...+|. +..+|+.-...+ ... +++++++.+++.+.+.. +-+..+|+.-..++.+.+.
T Consensus 83 ~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~ 159 (306)
T 3dra_A 83 RNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDL 159 (306)
T ss_dssp SCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 4899999999999998876 777888766665 555 78999999999998875 4477889888888888899
Q ss_pred cc--hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCchHHH
Q 047518 87 VS--HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF------VDKAKELFLKMKDKNVKPNVVTY 158 (256)
Q Consensus 87 ~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~ 158 (256)
++ +++++++++++.. +.|-.+|+.......+.+. +++++..++.+....+. |...|
T Consensus 160 ~~~~~EL~~~~~~i~~d---------------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW 223 (306)
T 3dra_A 160 HNDAKELSFVDKVIDTD---------------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTW 223 (306)
T ss_dssp TTCHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHH
T ss_pred cChHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHH
Confidence 88 9999999998852 3566777777777777776 89999999999887655 78888
Q ss_pred HHHHHHHhccCCHHH-HHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 159 TSVIRGFCYANDWNE-AKRLFIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 159 ~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
+-+-..+.+.|+... +..+..++.+.+ -..+...+..++.++.+.|+.++|.++++.+.+.--+.....|...
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 888888878887444 555666665432 1346788999999999999999999999999863123344455443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-07 Score=60.72 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=93.1
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 4678888889999999999999999988742 2356678889999999999999999999998764
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
. .+..++..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 74 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 74 P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 3 367788899999999999999999999998864 2345555555555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.2e-08 Score=67.23 Aligned_cols=121 Identities=7% Similarity=0.075 Sum_probs=98.1
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
...|++++|+..+++..+. .+.+...|..+...|...|++++|...|++....... +...+..+
T Consensus 21 ~~~~~~~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 84 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---------------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAAL 84 (177)
T ss_dssp C-----CCCCHHHHHHHHH---------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 4567888899998888774 2346678899999999999999999999998876533 66777788
Q ss_pred HHH-HhccCCH--HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 162 IRG-FCYANDW--NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 162 i~~-~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..+ +...|++ ++|...+++..+.. +.+...+..+..++...|++++|...|+.+.+.
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888 7788998 99999999999874 335778889999999999999999999999886
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-07 Score=61.13 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=99.8
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+......
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN---------------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 45677888889999999999999999988741 345677888999999999999999999999876
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
.. .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 DP-AYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred Cc-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 43 357788889999999999999999999999874 33667788888888877764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-08 Score=65.78 Aligned_cols=99 Identities=15% Similarity=-0.019 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|++..+.. +.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44567778888999999999999999999875 4478899999999999999999999999999863 446788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 047518 234 GFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~~ 254 (256)
+|.+.|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-07 Score=61.55 Aligned_cols=119 Identities=10% Similarity=-0.035 Sum_probs=85.6
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047518 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148 (256)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (256)
.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---------------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---------------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345677777888888888888888888877641 23456677778888888888888888888777
Q ss_pred CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 204 (256)
.... +...+..+..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 79 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 79 LEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred hCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 6432 56777778888888888888888888887753 223455566665555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=67.90 Aligned_cols=110 Identities=12% Similarity=0.001 Sum_probs=92.1
Q ss_pred hHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 108 ~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
++...+...+.+...+..+...+...|++++|...|+........ +...|..+..+|...|++++|...+++..... +
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 344555444556677888899999999999999999999887543 77888889999999999999999999999874 3
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.+...+..+..++...|++++|...|+...+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36678888999999999999999999998864
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-07 Score=66.39 Aligned_cols=133 Identities=11% Similarity=0.002 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---------------hHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN---------------VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...+..+...+...|++++|...|.+......... ...+..+..+|...|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34567788899999999999999999987533211 278888899999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH-HHHHHHHhc
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK-ELFVSMESM 254 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 254 (256)
. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++. ..++.|...
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 4467889999999999999999999999998763 446778888888888888777776 555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-07 Score=57.83 Aligned_cols=111 Identities=13% Similarity=0.065 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
...+..+...+...|++++|...|+....... .+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45677788899999999999999999987643 367788888899999999999999999999874 3467788899999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...|++++|...++...+.+ +.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 999999999999999998763 334555544443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.3e-08 Score=64.44 Aligned_cols=109 Identities=8% Similarity=-0.023 Sum_probs=89.7
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047518 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 221 (256)
.|+.+.... +.+...+..+...+...|++++|...++...... +.+...|..+..++...|++++|...|++.....
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344444432 1245667778888999999999999999999874 4478889999999999999999999999998763
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 222 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+.+...+..+..+|...|++++|.+.|++..+
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44677889999999999999999999998765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-08 Score=80.82 Aligned_cols=125 Identities=11% Similarity=0.049 Sum_probs=101.8
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (256)
.+...|..+.+.|++++|++.|++..+..+. +..+|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 84 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4567889999999999999999999998765 78899999999999999999999999999874 34677899999999
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 047518 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDG--LCKQGFVDKAKELFL 144 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 144 (256)
...|++++|++.++++.+.. | .+...+..+..+ +.+.|++++|+..++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~--p-------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK--P-------------HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS--T-------------TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC--C-------------CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998852 2 233345555555 888899999999998
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-07 Score=59.78 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
...|..+...+.+.|++++|...|.+..+.... +...|..+..++...|++++|...+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 446777888999999999999999999887543 67889999999999999999999999999874 3467788999999
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 047518 200 LCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~ 219 (256)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-07 Score=72.42 Aligned_cols=202 Identities=7% Similarity=-0.071 Sum_probs=142.2
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcc---------------cHHHHHHHHHccCChHHHHHHHHHHhhCC-CCCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVS---------------SFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPD 70 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 70 (256)
+..+.+.|++++|++.|..+.+..+...+.. ++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455778999999999999998766533321 26788999999999999999999875431 1122
Q ss_pred H----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047518 71 L----YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146 (256)
Q Consensus 71 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (256)
. .+.+.+...+...|+++.+..++........... ....-..++..+...|...|++++|..++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK---------RVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS---------CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 2 2333344445567889999999988765310000 00112346778899999999999999999987
Q ss_pred HhC----C-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 047518 147 KDK----N-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPN--VVTFNVIMDELCKNGKMDEASSLLDL 215 (256)
Q Consensus 147 ~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (256)
... + .+....++..++..|...|++++|..+++..... +..+. ...+..+...+...|++++|...|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 642 1 1123467888999999999999999999987642 21111 34566677777889999999888876
Q ss_pred HH
Q 047518 216 MI 217 (256)
Q Consensus 216 ~~ 217 (256)
..
T Consensus 242 a~ 243 (434)
T 4b4t_Q 242 SF 243 (434)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=7.4e-09 Score=72.49 Aligned_cols=96 Identities=15% Similarity=-0.047 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
..|..+..+|.+.|++++|+..++....... .+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 3455666677777777777777777666532 255666667777777777777777777776653 23455666666666
Q ss_pred HhcCChhHHH-HHHHHHHH
Q 047518 201 CKNGKMDEAS-SLLDLMIQ 218 (256)
Q Consensus 201 ~~~g~~~~a~-~~~~~~~~ 218 (256)
...++..++. ..+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666555 44444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-07 Score=60.70 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCc----HHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPN----VVTF 193 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 193 (256)
...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+++.++... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 346778899999999999999999999887543 678899999999999999999999999886421 111 2467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
..+..++...|++++|.+.|++.... .|++.+...+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 77888899999999999999998874 5676655443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.2e-07 Score=75.83 Aligned_cols=205 Identities=10% Similarity=0.036 Sum_probs=151.1
Q ss_pred CcCChhhHH-HHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCC---------CCCC-----------
Q 047518 12 TTITPNEAL-CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---------LFPD----------- 70 (256)
Q Consensus 12 ~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~----------- 70 (256)
..|+.++|. .+|++.....|. +...|...+....+.|++++|.++|+.+.... ..|+
T Consensus 355 ~~~~~~~a~r~il~rAi~~~P~--s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQCIPN--SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 456778896 999999886653 66678888888999999999999999987631 0132
Q ss_pred -HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 047518 71 -LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKD 148 (256)
Q Consensus 71 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 148 (256)
..+|...+....+.|..+.|..+|.++.+.. | ......|...+..-.+. ++++.|..+|+...+
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~--~------------~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK--K------------LVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG--G------------GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--C------------CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2468888888888899999999999998750 1 11223343333333344 559999999999887
Q ss_pred CCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
. .+-+...+...+......|+.+.|..+|+........+ ....|...+..-.+.|+.+.+.++.+++.+. .|+..
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~ 575 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVN 575 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCC
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCc
Confidence 6 33356667788888888899999999999999874321 4568888898889999999999999999875 34433
Q ss_pred hHHHHHHHH
Q 047518 227 TYNTLLDGF 235 (256)
Q Consensus 227 ~~~~l~~~~ 235 (256)
....++.-|
T Consensus 576 ~~~~f~~ry 584 (679)
T 4e6h_A 576 KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=7.7e-08 Score=63.46 Aligned_cols=99 Identities=9% Similarity=-0.112 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+...+..+...+.+.|++++|...|+......+. +...|..+..++...|++++|...++...... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 4456677788999999999999999999887543 77888889999999999999999999999875 346678888999
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 047518 199 ELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~ 219 (256)
++...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=75.54 Aligned_cols=187 Identities=11% Similarity=0.059 Sum_probs=125.3
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|..+...|++++|+..|++.....|. +...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 455677899999999999999998765 77889999999999999999999999998874 346778999999999999
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
++++|...|++..+.. |+.. .......+..+ ...+. . -+........+.+......+ ..+
T Consensus 87 ~~~~A~~~~~~al~l~--p~~~--------~~~~~~~~~~~--~~~~~------~-~~~~~~~~~~~~~~~i~~~l-~~l 146 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLA--KEQR--------LNFGDDIPSAL--RIAKK------K-RWNSIEERRIHQESELHSYL-TRL 146 (281)
T ss_dssp CHHHHHHHHHHHHHHH--HHTT--------CCCCSHHHHHH--HHHHH------H-HHHHHHHTCCCCCCHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHhC--ccch--------hhHHHHHHHHH--HHHHH------H-HHHHHHHHHHhhhHHHHHHH-HHH
Confidence 9999999999988741 1110 00011111111 11111 1 12222233333344433333 222
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 047518 166 CYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKN-GKMDEASSLLDLMIQ 218 (256)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~ 218 (256)
..|+.++|.+.++...+. .|+ ......+...+.+. +.+++|.++|..+.+
T Consensus 147 -~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 368889998888887765 444 33344444444444 668889999987764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=59.05 Aligned_cols=102 Identities=10% Similarity=0.027 Sum_probs=66.2
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 114 (256)
+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. |+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~--------- 72 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--ED--------- 72 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CC---------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cc---------
Confidence 45566677777777777777777777776653 2345566667777777777777777777766641 11
Q ss_pred hcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCC
Q 047518 115 VCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKN 150 (256)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 150 (256)
..+...+..+..++... |++++|...+.......
T Consensus 73 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 73 --EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp --TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred --cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 01345566666677777 77777777777666553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-06 Score=68.50 Aligned_cols=201 Identities=9% Similarity=-0.063 Sum_probs=143.3
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCC----------------HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-C
Q 047518 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPD----------------LYTHSILINCFCKMGRVSHGFVVLGRILRSCFT-P 104 (256)
Q Consensus 42 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 104 (256)
-...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+++.++.+.--. +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35667889999999999999877532211 124778899999999999999999887763101 1
Q ss_pred chhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-chHHHHHHHHHHhccCCHHHHHHHHH
Q 047518 105 DVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD----KNVKP-NVVTYTSVIRGFCYANDWNEAKRLFI 179 (256)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 179 (256)
+.. ....+.+.+...+...|++++|..++..... .+..+ -..++..+...+...|++++|..+++
T Consensus 90 ~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 90 KSK----------TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HHH----------HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chH----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 100 0112344455566678999999999987653 22222 35677889999999999999999999
Q ss_pred HHHHc--CC---CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHhHHHHHHHHHhcCChhHHHHHH
Q 047518 180 EMMDQ--GV---QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ----HGVRPD--AFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 180 ~~~~~--~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
++... +. .....++..++..|...|++++|..+++.... .+.++. ...+..+...+...|++++|...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 98743 11 11256788899999999999999999988764 221222 235666677788889999999887
Q ss_pred HHHH
Q 047518 249 VSME 252 (256)
Q Consensus 249 ~~m~ 252 (256)
.+..
T Consensus 240 ~~a~ 243 (434)
T 4b4t_Q 240 FESF 243 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-07 Score=59.50 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34567778888999999999999999999874 4468899999999999999999999999998863 446888999999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047518 234 GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~ 253 (256)
++...|++++|...+++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-07 Score=58.08 Aligned_cols=96 Identities=15% Similarity=0.012 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP--NVVTFNVIMD 198 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~ 198 (256)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34444555555555555555555555443221 33444445555555555555555555555432 11 2444445555
Q ss_pred HHHhc-CChhHHHHHHHHHHH
Q 047518 199 ELCKN-GKMDEASSLLDLMIQ 218 (256)
Q Consensus 199 ~~~~~-g~~~~a~~~~~~~~~ 218 (256)
++... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 55555 555555555555444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-05 Score=60.74 Aligned_cols=221 Identities=8% Similarity=-0.015 Sum_probs=159.0
Q ss_pred CcCChh-hHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC----------hHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 047518 12 TTITPN-EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH----------YDTVLSLFKRLNSTGLFPDLYTHSILINC 80 (256)
Q Consensus 12 ~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (256)
+.|.++ +|+.+++.+...+|. +..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-..+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345554 799999999997775 66778765444444333 678999999988764 3477788888888
Q ss_pred HHhcCC--cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCchHH
Q 047518 81 FCKMGR--VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF-VDKAKELFLKMKDKNVKPNVVT 157 (256)
Q Consensus 81 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 157 (256)
+...+. +++++.+++++.+. .+.|-.+|+.-.-.....|. +++++..++.+.+..+. |..+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~---------------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA 181 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA---------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS 181 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred HhccCcccHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence 888774 78999999999885 24567788877777788888 69999999999988665 7777
Q ss_pred HHHHHHHHhcc--------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-----------CChhHHHHH
Q 047518 158 YTSVIRGFCYA--------------NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-----------GKMDEASSL 212 (256)
Q Consensus 158 ~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~ 212 (256)
|+.....+... +.++++++.+....... +-|...|+.+-..+.+. +.++++++.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 77666655544 45788999999998774 44777887665555555 457889999
Q ss_pred HHHHHHCCCCCCH-HhHHHHHH---HHHhcCChhHHHHHHHHHHhc
Q 047518 213 LDLMIQHGVRPDA-FTYNTLLD---GFCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 213 ~~~~~~~~~~~~~-~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~ 254 (256)
++++.+. .|+. .++..++. .....|..+++..++.++++-
T Consensus 261 ~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 261 CKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 9998875 4443 33322222 222457778888888888753
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-07 Score=61.13 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...+..+...+...|++++|...++...... +.+...|..+..++...|++++|...|+.....+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34556667788899999999999999999874 3477889999999999999999999999998864 456778889999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047518 234 GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|...|++++|.+.+++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-07 Score=59.95 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCc----HHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPN----VVTF 193 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 193 (256)
...+..+...+...|++++|...|........ .+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34677788999999999999999999987653 3677888899999999999999999999886531 122 6788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
..+..++...|++++|.+.|+...+. .|+......+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 88999999999999999999999885 457666666555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.4e-07 Score=58.70 Aligned_cols=101 Identities=14% Similarity=0.005 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
+.+...+..+...+...|++++|...|......... +...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 356778889999999999999999999998887543 67888999999999999999999999999875 3467889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 047518 197 MDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..++...|++++|...|+...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999988753
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=5.6e-07 Score=56.65 Aligned_cols=96 Identities=9% Similarity=-0.048 Sum_probs=51.3
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
.+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------~ 69 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---------------P 69 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------T
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---------------c
Confidence 44555555556666666666666655442 2244455555555555566666665555555431 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.+...+..+..++...|++++|...++...+.
T Consensus 70 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 70 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 23344555555555555555555555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.8e-07 Score=58.92 Aligned_cols=99 Identities=9% Similarity=-0.071 Sum_probs=87.8
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 232 (256)
.+...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788889999999999999999999999874 3467889999999999999999999999998864 44788999999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 047518 233 DGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+|...|++++|...+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-06 Score=57.77 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN---VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
+.+...+..+...+...|++++|...|++..+.... + ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 356778888999999999999999999999886432 2 6788888899999999999999999998874 3367788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
..+..++...|++++|...|++..+.. +.+...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 899999999999999999999998753 3345555544443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-07 Score=62.93 Aligned_cols=134 Identities=7% Similarity=0.020 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C--chHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-c
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK---P--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQP-N 189 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 189 (256)
..++..+...|...|++++|...+.+..+.... + ...++..+...+...|++++|...+++..+. +..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346778888999999999999999987653111 1 1246788888999999999999999998753 1111 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQH----GVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
...+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788888999999999999999887642 2111 234677888899999999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.2e-07 Score=58.25 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=66.8
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhH
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD----LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF 109 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 109 (256)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|+..+++..+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 95 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-------- 95 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------
Confidence 34556677777777788888888888877765 344 4566667777777777777777777766531
Q ss_pred HhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 110 TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 110 ~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+.+...+..+..++...|++++|...|++....
T Consensus 96 -------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 96 -------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 234455666666777777777777777766654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-07 Score=61.34 Aligned_cols=101 Identities=8% Similarity=-0.015 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
..+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..+++..+.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345667888999999999999999999999887543 77889999999999999999999999999875 3468889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 047518 197 MDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
..++...|++++|...|++..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999998864
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.3e-07 Score=60.90 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...+..+...+...|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55677788888889999999999999998874 3367888889999999999999999999988763 446788888999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047518 234 GFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 234 ~~~~~g~~~~a~~~~~~m~~ 253 (256)
+|...|++++|.+.|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 99999999999999988765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=6e-07 Score=57.95 Aligned_cols=106 Identities=11% Similarity=0.058 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..+..+...+.+.|++++|+..|++.++. .+.+...|..+..+|.+.|++++|+..+++..+...
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 46778899999999999999999999874 234677899999999999999999999998876421
Q ss_pred --CCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 152 --KPN----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 152 --~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
.++ ..+|..+..++...|++++|+..+++.... .||.....
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 111 246777888899999999999999998875 45554443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-08 Score=79.23 Aligned_cols=144 Identities=13% Similarity=0.013 Sum_probs=77.3
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC--------------HhhHHHHHH
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD--------------LYTHSILIN 79 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 79 (256)
+++++|+..|+......+. ....|..+...+.+.|+++.|+..|++..+...... ...|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLE--QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444333222 445677777788888888888888887766421111 345555555
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 047518 80 CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159 (256)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (256)
+|.+.|++++|+..++++++.. +.+..+|..+..+|...|++++|...|++..+.... +...+.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~ 389 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD---------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARL 389 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 5556666666666665555531 223445555555555566666666666555554322 334445
Q ss_pred HHHHHHhccCCHHHHH
Q 047518 160 SVIRGFCYANDWNEAK 175 (256)
Q Consensus 160 ~li~~~~~~~~~~~a~ 175 (256)
.+..++...++.+++.
T Consensus 390 ~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 390 QISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-07 Score=71.62 Aligned_cols=132 Identities=8% Similarity=-0.028 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--------------hHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN--------------VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
....|..+...|.+.|++++|...|.+..+...... ...|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345778889999999999999999999887533221 578889999999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH-HHHHHH
Q 047518 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE-LFVSME 252 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 252 (256)
. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+ .+++|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 3468889999999999999999999999999863 3355678888888988888887764 445443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=5.2e-07 Score=57.70 Aligned_cols=95 Identities=8% Similarity=-0.093 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
+..+...+.+.|++++|...|+...+.... +...|..+..++...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 445566677777777777777777765432 56666777777777777777777777777663 2245666777777777
Q ss_pred cCChhHHHHHHHHHHHC
Q 047518 203 NGKMDEASSLLDLMIQH 219 (256)
Q Consensus 203 ~g~~~~a~~~~~~~~~~ 219 (256)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5.6e-07 Score=57.82 Aligned_cols=113 Identities=9% Similarity=0.052 Sum_probs=90.1
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++......
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD---------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4567788889999999999999999998752 3456778889999999999999999999987653
Q ss_pred CC--Cc----hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 151 VK--PN----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 151 ~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
.. ++ ..++..+..++...|++++|...++...+.. |+......+..+.
T Consensus 69 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 21 12 6778888999999999999999999999863 4655555544443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-05 Score=60.94 Aligned_cols=199 Identities=9% Similarity=-0.012 Sum_probs=143.3
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc-C-ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc----
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN-K-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS---- 88 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 88 (256)
.+++++..++.+....|. +..+|+.-...+.+. + ++++++.+++.+.+.. +-+..+|+.-.-++.+.+.++
T Consensus 104 ~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~ 180 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLK--SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISE 180 (349)
T ss_dssp CHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCH
T ss_pred hHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccch
Confidence 599999999999998775 888899888877776 7 8999999999999875 347778887777776666666
Q ss_pred ----hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCchHH
Q 047518 89 ----HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF-------VDKAKELFLKMKDKNVKPNVVT 157 (256)
Q Consensus 89 ----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 157 (256)
++++.++++++. .+.|..+|+.....+.+.+. +++++..+++.....+. |...
T Consensus 181 ~~~~eELe~~~k~I~~---------------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~Sa 244 (349)
T 3q7a_A 181 AQWGSELDWCNEMLRV---------------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSA 244 (349)
T ss_dssp HHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hhHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHH
Confidence 788888888875 24577788888888877776 78999999988877554 7777
Q ss_pred HHHHHHHHhccCCH--------------------HHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHhcCChhHHHHH
Q 047518 158 YTSVIRGFCYANDW--------------------NEAKRLFIEMMDQG-----VQPNVVTFNVIMDELCKNGKMDEASSL 212 (256)
Q Consensus 158 ~~~li~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~ 212 (256)
|+-+-..+.+.|.. .....+..++...+ -.++...+..+++.|...|+.++|.++
T Consensus 245 W~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~ 324 (349)
T 3q7a_A 245 WNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKV 324 (349)
T ss_dssp HHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHH
Confidence 76665555555543 22333333333221 135788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHH
Q 047518 213 LDLMIQHGVRPDAFTYNTLL 232 (256)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~ 232 (256)
++.+.+.--+....-|...+
T Consensus 325 ~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 325 FEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhhhChHHHHHHHHHH
Confidence 99997652233333444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=7.5e-07 Score=56.93 Aligned_cols=96 Identities=11% Similarity=-0.083 Sum_probs=82.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (256)
.+..+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556677889999999999999999874 3478889999999999999999999999998863 446788999999999
Q ss_pred hcCChhHHHHHHHHHHhc
Q 047518 237 LTGRVNHAKELFVSMESM 254 (256)
Q Consensus 237 ~~g~~~~a~~~~~~m~~~ 254 (256)
..|++++|+..+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.58 E-value=4.5e-05 Score=61.05 Aligned_cols=125 Identities=10% Similarity=0.095 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY-ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
..|...+....+.++++.|..+|+.. .. ...+...|......-.. .++.+.|..+++...+.. +-+...|...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 56777777777888999999999999 32 12244444432222222 336999999999998763 2234556777888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
....|+.+.|..+|+.+. .....|...+..=...|+.+.+.+++++..+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999872 2567788888777788999999998887763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-07 Score=73.35 Aligned_cols=121 Identities=9% Similarity=-0.009 Sum_probs=96.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
+...+.+.|++++|...|++..+.... +..+|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 345677889999999999999887433 67889999999999999999999999999874 3467889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 047518 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDG--FCLTGRVNHAKELFV 249 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 249 (256)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998753 2234455555555 888899999999877
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-06 Score=66.70 Aligned_cols=124 Identities=12% Similarity=-0.003 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDK---------------NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
..+..+...+.+.|++++|+..|++..+. -.+.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777889999999999999999988761 112245778889999999999999999999999874
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999998763 3467778888888888888877765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.1e-07 Score=59.92 Aligned_cols=137 Identities=10% Similarity=-0.031 Sum_probs=70.3
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCC-CC----HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHh
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PD----LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (256)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.....+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 35666777777778888888877776543100 11 135666666777777777777777766542100000
Q ss_pred hhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NVK-PNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 112 ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
.......+..+...+...|++++|...+++.... +.. ....++..+...+...|++++|...+++..
T Consensus 85 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 85 ----RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 0001234455555666666666666666554321 100 012233444444444455555544444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-05 Score=51.54 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---HHHHHHHH
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV---VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN---VVTFNVIM 197 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll 197 (256)
..+...+...|++++|...|+...+.... +. ..+..+..++...|++++|...++...+.... + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 44567888999999999999999876432 23 57778888999999999999999999986422 2 56788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047518 198 DELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
.++...|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.2e-06 Score=52.90 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=58.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
+..+...+...|++++|...|+...+... .+. ..+..+..++...|++++|...++++.+.. |+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~--------- 72 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTH--------- 72 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTS---------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCC---------
Confidence 44455666677777777777777665421 122 356666666777777777777777766531 110
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.....++..+..++...|++++|...|+.+...
T Consensus 73 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 73 -DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp -TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 000344555666666777777777777766654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-06 Score=56.20 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDK--------N---------VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
...+......+.+.|++++|+..|...... . .+.+...|..+..+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677788999999999999999988764 1 01134678888999999999999999999999
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047518 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 183 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (256)
+.. +.+...|..+..++...|++++|...|+...+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 874 446788999999999999999999999999875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=69.06 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=96.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-----C--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CCc-HHHHH
Q 047518 129 GLCKQGFVDKAKELFLKMKDK-----N--VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----GV-QPN-VVTFN 194 (256)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~ 194 (256)
.+...|++++|+.++++..+. | .+....+++.+...|...|++++|+.++++.... |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887642 2 1123467899999999999999999999987742 21 222 56789
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-----CCC-CC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQ-----HGV-RP-DAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.|...|...|++++|+.++++..+ .|- .| ...+...+..++...+.+++|..+++++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 231 12 234566777788889999999999999876
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.2e-07 Score=57.24 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHH
Q 047518 132 KQGFVDKAKELFLKMKDKN--VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 209 (256)
..|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...+++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998874 22356778888899999999999999999999875 33577888899999999999999
Q ss_pred HHHHHHHHHC
Q 047518 210 SSLLDLMIQH 219 (256)
Q Consensus 210 ~~~~~~~~~~ 219 (256)
...+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.1e-06 Score=54.85 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=85.3
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHhc------CCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047518 71 LYTHSILINCFCKMGRVSHGFVVLGRILRS------CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144 (256)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (256)
...+......+.+.|++++|+..|.+.++. ...|+...+. ...+.+...|..+..+|.+.|++++|+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWV---ELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHH---HHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHH---HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345667777888888888888888887763 0011111100 0012345678899999999999999999999
Q ss_pred HHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH
Q 047518 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 190 (256)
........ +...|..+..+|...|++++|...++...+. .|+.
T Consensus 88 ~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 88 EVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 99887543 7788999999999999999999999999987 4543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.45 E-value=5.2e-06 Score=63.91 Aligned_cols=138 Identities=10% Similarity=-0.037 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFT-PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
..+..+...+.+.|++++|+..|+++++.--. +............+.+...|..+..+|.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34677788888999999999999888762000 00000000000112345678899999999999999999999999875
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
.. +...|..+..+|...|++++|...+++..+.. +.+...+..+..++...++.+++.+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67888999999999999999999999999874 2356677777777777777766654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=66.53 Aligned_cols=131 Identities=11% Similarity=-0.022 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH------------------HHHHHHHHHhccCCHHHHHHHHHHH
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV------------------TYTSVIRGFCYANDWNEAKRLFIEM 181 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~~ 181 (256)
...+..+...+.+.|++++|...|.+..... |+.. .|..+..+|.+.|++++|...+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4467778889999999999999999987653 3332 7888899999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHhcCChhHHHHHHHHHHhc
Q 047518 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG-FCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 182 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 254 (256)
++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+++.++|++|.+.
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9874 3467889999999999999999999999987642 2234455555544 23456677788888877653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-05 Score=64.46 Aligned_cols=172 Identities=9% Similarity=-0.031 Sum_probs=124.9
Q ss_pred hhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC----------hHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH----------YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.++|++.++++...+|. +..+|+.--..+...|+ +++++..++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 35678888888887775 67778877777766666 888888888888765 336678888777888888
Q ss_pred --CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 047518 86 --RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG-FVDKAKELFLKMKDKNVKPNVVTYTSVI 162 (256)
Q Consensus 86 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (256)
+++++++.++++.+.. +.+..+|+.-.-++.+.| .++++++.++++.+..+. +..+|+...
T Consensus 122 ~~~~~~el~~~~k~l~~d---------------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~ 185 (567)
T 1dce_A 122 EPNWARELELCARFLEAD---------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRS 185 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhc---------------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHH
Confidence 5588888888888742 346667777777777777 788888888888877654 666776666
Q ss_pred HHHhcc--------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 163 RGFCYA--------------NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 163 ~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
..+.+. +.++++++.+++..... +-|...|...-..+.+.++.+
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 665543 45677888887777664 336677777776666666533
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.8e-07 Score=56.17 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
..++..+..+|...|++++|...|++..+..+. +..++..+..++...|++++|...+++....
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555555555555555555555554322 3444555555555555555555555555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-05 Score=50.85 Aligned_cols=111 Identities=10% Similarity=-0.065 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChhHH
Q 047518 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEA 209 (256)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a 209 (256)
+++++|...|.+..+.|.. +.. +-..|...+..++|..++++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 5688999999999988732 332 6677777788899999999999875 56778888888888 8899999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 047518 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMESMG 255 (256)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 255 (256)
.+.|++..+.| ++..+..|...|.. .++.++|.+++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999999876 67778888888988 899999999999988776
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00022 Score=53.60 Aligned_cols=189 Identities=10% Similarity=-0.038 Sum_probs=135.6
Q ss_pred HccCCh-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----------cchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 47 AKNKHY-DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR----------VSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 47 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
.+.|.+ ++|+.+++.+.... +-+..+|+.--..+...+. +++++.+++.+...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---------------
Confidence 455665 48999999999874 2244566655444443333 45666777766653
Q ss_pred cCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCcHHH
Q 047518 116 CKPDAITYNTIIDGLCKQG--FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEAKRLFIEMMDQGVQPNVVT 192 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 192 (256)
.+.+..+|+.-.-.+.+.+ .+++++.+++.+.+..+. |..+|+--.-.+...|. ++++++.++.+.+..+ -|...
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SA 181 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSS 181 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHH
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHH
Confidence 3567778888777777777 489999999999988765 77788877777778888 6899999999998763 47778
Q ss_pred HHHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-----------CChhHHHHH
Q 047518 193 FNVIMDELCKN--------------GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT-----------GRVNHAKEL 247 (256)
Q Consensus 193 ~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~ 247 (256)
|+.....+... +.++++.+.+....... +-|...|+-+-..+.+. +..+++++.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 87777666655 45788899998888753 55777777555555444 346788888
Q ss_pred HHHHHhc
Q 047518 248 FVSMESM 254 (256)
Q Consensus 248 ~~~m~~~ 254 (256)
++++.+.
T Consensus 261 ~~elle~ 267 (331)
T 3dss_A 261 CKELQEL 267 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=65.51 Aligned_cols=147 Identities=9% Similarity=-0.010 Sum_probs=66.5
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhc
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (256)
..+..+...+.+.|+++.|...|++.... .|+... +...++..++...+ .
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~------------------ 229 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K------------------ 229 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H------------------
Confidence 34666777788888888888888887664 233321 11111111111111 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (256)
...|..+..+|.+.|++++|+..++....... .+...|..+..+|...|++++|...|++..+.. +-+...+..+
T Consensus 230 ---~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L 304 (338)
T 2if4_A 230 ---NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRREL 304 (338)
T ss_dssp ---THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 11455566666777777777777776665532 255666666677777777777777777666542 1123333333
Q ss_pred HHH-HHhcCChhHHHHHHHHHHH
Q 047518 197 MDE-LCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 197 l~~-~~~~g~~~~a~~~~~~~~~ 218 (256)
... ....+..+++..+|..+..
T Consensus 305 ~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 305 RALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 333 2234455666666666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00013 Score=58.40 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=79.5
Q ss_pred hHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH-----------------------------
Q 047518 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY----------------------------- 158 (256)
Q Consensus 108 ~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------- 158 (256)
+|...+..++.+...|...+..+.+.|++++|..+|++.... +.+...+
T Consensus 201 ~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 201 IHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 444455556667788888888888899999999999887766 2222211
Q ss_pred -----------HHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHH
Q 047518 159 -----------TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK-NGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 159 -----------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
...+....+.++.+.|..+|+.. ... ..+...|...+..-.. .++.+.|..+|+...+.- +-++.
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~ 355 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTL 355 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHH
Confidence 11122222345566677777766 221 1233334322222222 225777777777766542 22344
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
.+...++...+.|+.+.|..+|++.
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555566566677777777776653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.9e-06 Score=66.83 Aligned_cols=131 Identities=8% Similarity=0.003 Sum_probs=91.0
Q ss_pred HHHccCChHHHHHHHHHHhhC---CCCC----CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcC
Q 047518 45 CLAKNKHYDTVLSLFKRLNST---GLFP----DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117 (256)
Q Consensus 45 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (256)
.+...|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++.++. +...+....
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i--------~~~~lG~~H 389 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG--------YMKLYHHNN 389 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHSCTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------HHHHcCCCC
Confidence 456889999999999887543 1112 2458999999999999999999999988763 111111111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 118 P-DAITYNTIIDGLCKQGFVDKAKELFLKMKD-----KNV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 118 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
| ...+++.|...|...|++++|+.++++..+ .|. +....+.+.+-.++...+.+.+|+.++..+.+
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 245688888999999999999998887653 232 11233455566666777778888888877764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-05 Score=52.33 Aligned_cols=98 Identities=9% Similarity=-0.024 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------c-----hHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP------N-----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----- 184 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 184 (256)
..+......+.+.|++++|+..|++..+..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345666788889999999999999987754321 2 237888888889999999999999988875
Q ss_pred CCCC-cHHHH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 185 GVQP-NVVTF----NVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 185 ~~~~-~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+.| +...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1133 45577 7888888899999999999988764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-05 Score=52.32 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC------c-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP------N-----VVTFNVIMDELCKNGKMDEASSLLDLMIQH----- 219 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 219 (256)
..+......+...|++++|+..|++.++..... + ...|.....++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345556677788999999999999999763221 2 238999999999999999999999999874
Q ss_pred CCCCC-HHhH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 220 GVRPD-AFTY----NTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 220 ~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
.+.|+ ...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11454 4577 8889999999999999999998765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.9e-05 Score=60.67 Aligned_cols=175 Identities=10% Similarity=-0.051 Sum_probs=135.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----------cchHHHHHHHHHhcCCCCchhhHHhhhhhcCC
Q 047518 49 NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR----------VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 118 (256)
....++|++.++.+.... +-+..+|+.--.++...++ ++++++.++++.+. .+.
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---------------~pK 105 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---------------NPK 105 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------------CTT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------------CCC
Confidence 334578899999998874 2355677777777766666 78888888888874 245
Q ss_pred CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 119 DAITYNTIIDGLCKQG--FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
+..+|+.-.-++.+.+ ++++++..++++.+.... +..+|+.....+.+.| .++++++.++++.+..+ -|...|+.
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~ 183 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHY 183 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHH
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHH
Confidence 6778888888888899 779999999999998765 7888888888888888 89999999999998753 47788888
Q ss_pred HHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 047518 196 IMDELCKN--------------GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 196 ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 242 (256)
....+... +.++++.+.++...... +-+...|..+-..+.+.++.+
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 77777663 45788999998888753 446778887777777766643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.3e-06 Score=52.25 Aligned_cols=81 Identities=10% Similarity=-0.037 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHH
Q 047518 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96 (256)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 96 (256)
+.|+..|++..+..|. +...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688899999887664 77889999999999999999999999998864 34567899999999999999999999999
Q ss_pred HHhc
Q 047518 97 ILRS 100 (256)
Q Consensus 97 ~~~~ 100 (256)
..+.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8763
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.9e-05 Score=50.10 Aligned_cols=113 Identities=5% Similarity=-0.109 Sum_probs=73.0
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCc
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----MGRV 87 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 87 (256)
..+++++|++.|++..+.+.. +. . +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~--~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEM--FG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT--TH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CccCHHHHHHHHHHHHcCCCH--hh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 345677777777777765532 32 2 5566666666777777777777654 45566666666666 6677
Q ss_pred chHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 047518 88 SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK----QGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 150 (256)
++|+.+|++..+.| ++..+..|...|.. .+++++|...|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g-----------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN-----------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-----------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777776643 34455566666666 667777777777666655
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-06 Score=53.87 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
..+..+...+...|++++|...|++....... +...+..+..++...|++++|...+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444445555555555555555554443221 334444444444555555555555555444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.7e-06 Score=56.40 Aligned_cols=89 Identities=6% Similarity=-0.019 Sum_probs=75.1
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCCh----------HHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHY----------DTVLSLFKRLNSTGLFPDLYTHSILI 78 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~ 78 (256)
..-+.+.+++|++.++...+..|. +...|..+..++.+.+++ ++|+..|++..+.. +.+..+|..+.
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG 87 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIG 87 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 445667899999999999998886 888899899899888775 59999999998874 23567899999
Q ss_pred HHHHhcC-----------CcchHHHHHHHHHhc
Q 047518 79 NCFCKMG-----------RVSHGFVVLGRILRS 100 (256)
Q Consensus 79 ~~~~~~~-----------~~~~a~~~~~~~~~~ 100 (256)
.+|...| ++++|++.|++.++.
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 9998774 899999999999985
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=49.14 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-------AF 226 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~ 226 (256)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 56678888899999999999999999999874 346788999999999999999999999999975 343 66
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 047518 227 TYNTLLDGFCLTGRVNHAKELFVS 250 (256)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~ 250 (256)
.+..+..++...|+.+.|...+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 778888888888888777665443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.8e-05 Score=48.19 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.|+..|+...+... .+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...|+...
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57778888877654 367788889999999999999999999999874 3457788899999999999999999999887
Q ss_pred HC
Q 047518 218 QH 219 (256)
Q Consensus 218 ~~ 219 (256)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.10 E-value=6.8e-05 Score=44.56 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
.+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4444455555555555555555555443221 3344444445555555555555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.09 E-value=8.8e-05 Score=44.03 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45677788888999999999999999999874 3467788899999999999999999999998753 346667777776
Q ss_pred HHHhcC
Q 047518 234 GFCLTG 239 (256)
Q Consensus 234 ~~~~~g 239 (256)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=44.91 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.+...+..+..+|...|++++|+..|++..+.... +...|..+..+|...|++++|...+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566777777777888888888888777766433 555677777777777888877777777664
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0001 Score=45.01 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHH
Q 047518 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLL 232 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~ 232 (256)
+...+..+..+|...|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 56778888899999999999999999999875 3356788899999999999999999999877531 123555555555
Q ss_pred HHHHhcCC
Q 047518 233 DGFCLTGR 240 (256)
Q Consensus 233 ~~~~~~g~ 240 (256)
..+.+.+.
T Consensus 85 ~~l~~~~~ 92 (100)
T 3ma5_A 85 DAKLKAEG 92 (100)
T ss_dssp HHHHHHHT
T ss_pred HHHHHccc
Confidence 55544433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=7.5e-05 Score=49.50 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=78.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCH----------HHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW----------NEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
.+.+.+++|...++...+.... +...|..+-.++...+++ ++|+..|++.++.. +-+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4556789999999998887644 777888787788777664 59999999999874 23567888899998
Q ss_pred HhcC-----------ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047518 201 CKNG-----------KMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235 (256)
Q Consensus 201 ~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (256)
...| ++++|.+.|++..+. .|+...|...+...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 8764 899999999999885 67766666655543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00032 Score=55.01 Aligned_cols=87 Identities=7% Similarity=-0.109 Sum_probs=66.2
Q ss_pred ccCCHHHHHHHHHHHHHc---CCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CC-CCCC-HHhHHHHH
Q 047518 167 YANDWNEAKRLFIEMMDQ---GVQPN----VVTFNVIMDELCKNGKMDEASSLLDLMIQ-----HG-VRPD-AFTYNTLL 232 (256)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~-~~~~-~~~~~~l~ 232 (256)
..|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.++++..+ .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887742 12222 46788999999999999999999988764 22 1222 34688899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 047518 233 DGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~m~~ 253 (256)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999887654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00071 Score=53.08 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=57.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHc---CCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CC-CCC-CHHh
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQ---GVQPN----VVTFNVIMDELCKNGKMDEASSLLDLMIQ-----HG-VRP-DAFT 227 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~-~~~-~~~~ 227 (256)
+..+...|++++|+..+++..+. -+.|+ ..+++.+...|...|++++|+.++++..+ .| ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667777777777777642 11122 45667777777777777777777776653 11 112 2335
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 228 YNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6777777777777777777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0043 Score=47.15 Aligned_cols=138 Identities=9% Similarity=0.036 Sum_probs=67.8
Q ss_pred CCcccHHHHHHHHHc--cC---ChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHh---cCCcch-HHHHHHHHHhcCCC
Q 047518 34 PPVSSFNIMLGCLAK--NK---HYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCK---MGRVSH-GFVVLGRILRSCFT 103 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~-a~~~~~~~~~~~~~ 103 (256)
.+...|...+++... .+ +..+|..+|++..+. .|+ ...|..+..+|.. .+.+.. ...-+....+.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a--- 266 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN--- 266 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH---
Confidence 466778777765543 22 347888888888876 344 3455544444431 111110 00000100000
Q ss_pred CchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 104 PDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 104 ~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
...+...+.++.+|.++...+...|++++|...+++....+ |+...|..+-..+...|++++|.+.+++...
T Consensus 267 ------~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 267 ------IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp ------HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00001123444555555555555566666666666665553 4555555555555556666666666666555
Q ss_pred c
Q 047518 184 Q 184 (256)
Q Consensus 184 ~ 184 (256)
.
T Consensus 339 L 339 (372)
T 3ly7_A 339 L 339 (372)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00047 Score=54.07 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=68.8
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCC----chHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C-CCCc-HHHHHHHH
Q 047518 132 KQGFVDKAKELFLKMKDK---NVKP----NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----G-VQPN-VVTFNVIM 197 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~ll 197 (256)
..|++++|+.++++..+. -+.| ...+++.+..+|...|++++|+.++++.... | -.|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999887542 1222 2467899999999999999999999998742 2 1233 55789999
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 047518 198 DELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00069 Score=53.15 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=72.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----chHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C-CCCc-HHH
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKN---VKP----NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----G-VQPN-VVT 192 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 192 (256)
+..+.+.|++++|+..+++..+.. ..| ...+++.+...|...|++++|+.++++.... | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455677899999999999887531 122 3467899999999999999999999988742 2 1222 557
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
++.+...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999999999998764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0028 Score=53.80 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+...|..+...+.+.++++.|.++|..+.+ |..+...+...|+.+....+.+.....|. ++....
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~ 744 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFN 744 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHH
Confidence 455667777777777777777777776543 23344444456666665555555554431 233344
Q ss_pred HHHhcCChhHHHHHHHHH
Q 047518 199 ELCKNGKMDEASSLLDLM 216 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~ 216 (256)
++.+.|++++|.+++.++
T Consensus 745 ~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHc
Confidence 455667777777776554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.005 Score=52.28 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=30.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 182 (256)
....|++++|.++.+.+ .+...|..+...+.+.++++.|++.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 45567777776665433 255667777777777777777777776653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0045 Score=47.06 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=86.0
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc---C--C---hHHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhc
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN---K--H---YDTVLSLFKRLNS-TGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 84 (256)
.+..+|+.+|++..+..|. ....|..+..++... + . .......++.... ...+.+..+|..+...+...
T Consensus 213 ~~~~~A~~l~e~Al~lDP~--~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPE--FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 4468899999999998875 555565544444311 1 1 1111112222111 11245677888887777778
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (256)
|++++|...+++++..+ |+...|..+...+.-.|++++|...|.+....+ |...+|.
T Consensus 291 gd~d~A~~~l~rAl~Ln----------------~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~ 347 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLE----------------MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHH
T ss_pred CCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHH
Confidence 99999999999999863 455567778889999999999999999988864 4555654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00095 Score=40.24 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=48.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 66 (256)
|..+...|++++|+..|++..+..|. +.. .|..+..++...|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44566789999999999999887765 666 88888999999999999999999988764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0042 Score=37.23 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=55.1
Q ss_pred CCchHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 152 KPNVVTYTSVIRGFCYAND---WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 152 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
+.+...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3466777777777765555 799999999999875 3467888888899999999999999999999863
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.003 Score=37.98 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=37.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...+.+.|++++|...|+...+.... +.. .+..+..++...|++++|...+++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44566677777777777776665332 445 6666666777777777777777777665
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.021 Score=38.46 Aligned_cols=130 Identities=19% Similarity=0.161 Sum_probs=81.8
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHH
Q 047518 43 LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122 (256)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 122 (256)
.....+.|+++.|.++.+.+ .+...|..|.......|+++-|+..|++...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------------- 62 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------------------- 62 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------------------
Confidence 44556778888888887765 2567888888888888888888888877654
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 202 (256)
+..+.-.|.-.|+.+.-.++-+.....|- ++.....+...|+++++.+++.+.-+ -|.. ......
T Consensus 63 ~~~L~~Ly~~tg~~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t 127 (177)
T 3mkq_B 63 FDKLSFLYLVTGDVNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKA 127 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHH
Confidence 34455566667777766666555554432 34444555667888888877744322 1211 111223
Q ss_pred cCChhHHHHHHHHH
Q 047518 203 NGKMDEASSLLDLM 216 (256)
Q Consensus 203 ~g~~~~a~~~~~~~ 216 (256)
.|-.+.|.++.+.+
T Consensus 128 ~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 128 NGDEAAASAFLEQA 141 (177)
T ss_dssp TTCHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHh
Confidence 55566666666654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0013 Score=43.23 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=74.8
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC---ChHHHHHHHHHHhhCCCCC--CHhhHHHHHHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK---HYDTVLSLFKRLNSTGLFP--DLYTHSILINC 80 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 80 (256)
.....+..+....+.+-|.+....++ ++..+...+..++++.+ +.++++.+++...+.. .| ....+..+.-+
T Consensus 4 ~l~~~l~~~~l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 4 VLNELVSVEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG 80 (152)
T ss_dssp CCSCSCCHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHH
Confidence 34566677778888888988877665 58888888999999988 5669999999998874 24 35666777788
Q ss_pred HHhcCCcchHHHHHHHHHhc
Q 047518 81 FCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~ 100 (256)
|.+.+++++|.++++.+++.
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhc
Confidence 99999999999999999985
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0057 Score=36.60 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 117 KPDAITYNTIIDGLCKQGF---VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
+.++..+..+..++...++ .++|..++++..+.... +..+...+...+...|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567778888888765555 79999999999987654 77788888889999999999999999999874
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.022 Score=36.35 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
.+|++......+-.+-. +...+...++.....|..++-.+++.++... .+|+......+..+|.+.|+..+|.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHH
Confidence 45666666665554432 4445667777778888888888888886443 36777788888888888888888888
Q ss_pred HHHHHHHCCCC
Q 047518 212 LLDLMIQHGVR 222 (256)
Q Consensus 212 ~~~~~~~~~~~ 222 (256)
++.+..+.|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 88888887754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.027 Score=34.33 Aligned_cols=66 Identities=8% Similarity=-0.064 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKN------VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+..-+..+...+.+.++++.|...|+...+.- ..+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556677778888888888888887765431 1234566777777777777777777777777765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.023 Score=37.28 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCChhHH
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN---DWNEAKRLFIEMMDQGVQP--NVVTFNVIMDELCKNGKMDEA 209 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a 209 (256)
....+.+-|.+..+.+. ++..+...+..++++.+ +.+++..+++...+.. .| +...+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34566777777766665 57777777777888877 6668999999988874 34 356667777788999999999
Q ss_pred HHHHHHHHHCCCCCC
Q 047518 210 SSLLDLMIQHGVRPD 224 (256)
Q Consensus 210 ~~~~~~~~~~~~~~~ 224 (256)
.+.++.+.+. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 9999999885 554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.013 Score=35.77 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=57.8
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047518 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 225 (256)
.+...+..+...+...+++..|...++...+.. -.+....+..+..++.+.|+++.|...++++.+. .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 355566778888999999999999999988641 1345778899999999999999999999999986 4543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.056 Score=34.58 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=87.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-C----------------CCCcHHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-G----------------VQPNVVT 192 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~----------------~~~~~~~ 192 (256)
+.-.|..++..++..+..... +..-||.+|.-....-+-+-..++++.+-+. . ...+...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~ 93 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 93 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHH
Confidence 455788888888888876642 3334455554433333444444444433211 0 1234566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
++..++.+...|+-++-.+++..+... -+|++.....+..+|.+.|+..+|.+++++.-++|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 788889999999999999999996553 478999999999999999999999999999999885
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.051 Score=35.41 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCchH-HHHHHHH------HHhccCCHHHHHHHHHHHHH
Q 047518 117 KPDAITYNTIIDGLCKQGFV------DKAKELFLKMKDKNVKPNVV-TYTSVIR------GFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~~~~~~a~~~~~~~~~ 183 (256)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...|. .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888998 8888999988764 445421 1111111 12344899999999999987
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 184 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
.+-.. ...|......-.+.|+...|.+++......+..| .......++-
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 64343 7788888888889999999999999999876444 4445544443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.076 Score=35.77 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 047518 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181 (256)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 181 (256)
...|+++.|.++.+.+ .+...|..+.......|+++-|...|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 13444555555555555555555554443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.067 Score=39.22 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCCC--CcHH
Q 047518 120 AITYNTIIDGLCK-----QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQGVQ--PNVV 191 (256)
Q Consensus 120 ~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~ 191 (256)
...|..+...|.+ .|+.++|...|++..+.+..-+..++......++.. |+.+.+.+.+++....... |+..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 5678888999988 499999999999998875432466777788888774 9999999999999987655 6654
Q ss_pred HHHH
Q 047518 192 TFNV 195 (256)
Q Consensus 192 ~~~~ 195 (256)
..+.
T Consensus 279 lan~ 282 (301)
T 3u64_A 279 LLVI 282 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.058 Score=45.29 Aligned_cols=129 Identities=12% Similarity=0.052 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHHc------CCCCc----
Q 047518 122 TYNTIIDGLCKQGF-VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAKRLFIEMMDQ------GVQPN---- 189 (256)
Q Consensus 122 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~------~~~~~---- 189 (256)
.-..++..+...++ ++.|..+|+++.......+......++..+.+.+ +--+|.+++.+..+. ...+.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34556666666766 5889999999988743322222333444433333 233455555554421 11111
Q ss_pred -------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 190 -------VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 190 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
......-...|...|+++-|+++-++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112333345577899999999999999875 2456889999999999999999999888765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.055 Score=34.18 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=64.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHH---HHHHHHHHHHcCCCC--cHHHHHHHHHHH
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE---AKRLFIEMMDQGVQP--NVVTFNVIMDEL 200 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~ll~~~ 200 (256)
++...........+.+-|......|. ++..+--.+..++.+..+... ++.+++.+.+.+ .| .......+.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 33444445556667777776666554 566666667777777777666 888888887764 23 345566677788
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 047518 201 CKNGKMDEASSLLDLMIQH 219 (256)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~ 219 (256)
.+.|++++|.+.++.+.+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 8999999999999998875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.021 Score=41.81 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=73.4
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-----cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
.-.-+....|...+++..+..|.-.+-..|..+...|.+ -|+.++|.+.|++..+.+..-+..++......+++.
T Consensus 173 ~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 173 SALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred hHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Confidence 334456678899999999977653345689999999998 499999999999999874322467788888888884
Q ss_pred -CCcchHHHHHHHHHhcC
Q 047518 85 -GRVSHGFVVLGRILRSC 101 (256)
Q Consensus 85 -~~~~~a~~~~~~~~~~~ 101 (256)
|+.+.+.+.+++.+...
T Consensus 253 ~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 253 LNNRAGFDEALDRALAID 270 (301)
T ss_dssp TTCHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHcCC
Confidence 99999999999999864
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=96.08 E-value=0.1 Score=31.29 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+.-+..+.++.+....+.|+.....+.+++|.+.+++..|.++|+.+..+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45556666666666666677777777777777777777777777666543 2223334555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.067 Score=33.80 Aligned_cols=82 Identities=15% Similarity=0.020 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCChhHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE---ASSLLDLMIQHGVRP--DAFTYNTLLDGFCLTGRVNHA 244 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 244 (256)
....+.+-+.+....|. ++..+--.+..++.++..... ++.+++++.+.+ .| .......+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444544444332 455555555556665555444 556666655542 12 223344445566666666666
Q ss_pred HHHHHHHHh
Q 047518 245 KELFVSMES 253 (256)
Q Consensus 245 ~~~~~~m~~ 253 (256)
.+.++.+.+
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.18 Score=32.89 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHhccCCH------HHHHHHHHHHHHcCCCCcHH-HHHHHHH------HHHhcCChhHHHHHHHHHHHCC
Q 047518 154 NVVTYTSVIRGFCYANDW------NEAKRLFIEMMDQGVQPNVV-TFNVIMD------ELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 154 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~------~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
|..+|-..+....+.|++ +...++|++.... ++|+.. .|...+. .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666666666666777 7777888888765 455421 1111111 1234589999999999998753
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047518 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 255 (256)
-.. ...|....+.=.+.|+...|.+++.+.+..|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 333 6677777777789999999999998877654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.51 Score=42.08 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=126.7
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCch------hhHHh
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV------VTFTS 111 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ 111 (256)
....++..+...+.++.+.++...... +...--.+..++...|++++|...|++... |+..+. .....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccc
Confidence 344566777778888877765544332 334445677889999999999999987643 222211 11111
Q ss_pred hhh---hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 112 LIK---VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 112 ll~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
+.. ....-..-|..++..+.+.+.++.+.++-....+...+-+ ...|..+.+++...|++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 111 1122345688899999999999999988876654322111 235788999999999999999999888765
Q ss_pred CCCCcHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHH-C-CCCCCHHhHHHHHHHHHhcCChhHHHHH-HH
Q 047518 185 GVQPNVVTFNVIMDELCKNGK------------MDEASSLLDLMIQ-H-GVRPDAFTYNTLLDGFCLTGRVNHAKEL-FV 249 (256)
Q Consensus 185 ~~~~~~~~~~~ll~~~~~~g~------------~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~ 249 (256)
.. -......++..++..|. .++..+++..-.+ . .+...+.-|..|=.-+...|++.+|-.+ |+
T Consensus 968 ~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B 968 PL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp SS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHH
Confidence 43 34567777777776654 3444555543221 1 1111223345554555667777766553 44
Q ss_pred HH
Q 047518 250 SM 251 (256)
Q Consensus 250 ~m 251 (256)
..
T Consensus 1046 ~~ 1047 (1139)
T 4fhn_B 1046 KL 1047 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.24 Score=31.49 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
|.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+-...+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45556666666666777777777888888888888888888887777643 2333445666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.19 Score=38.89 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=53.8
Q ss_pred cCCcchHHHHHHHHHhcCCC---Cchhh--H----HhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 047518 84 MGRVSHGFVVLGRILRSCFT---PDVVT--F----TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~---~~~~~--~----~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
.|+.+.+...+.++....-- ++... | ..-+. ..-..+...++.++...|++++|...+..+.... +.+
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~--~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~ 204 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALV--EDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PYR 204 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 47777888888887764211 11100 0 00000 0001122334455556666666666666555443 235
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCcHHH
Q 047518 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMD-----QGVQPNVVT 192 (256)
Q Consensus 155 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 192 (256)
...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 205 E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 205 EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 55666666666666666666666665542 355665444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=94.24 E-value=0.48 Score=28.47 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=53.5
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 129 GLCKQG-FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 129 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
.|.+.. +.=+..+.++.+....+.|++....+.+++|.+.+++..|.++++-++.. +.+...+|..++.
T Consensus 18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 344444 55678888888888888999999999999999999999999999998855 2334455766654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.00042 Score=54.29 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|.+.+..+++.+|++.|=+. .|+..|..++..+.+.|.+++-++.+...++..- ++.+=+.|+-+|++.++
T Consensus 61 gkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 61 AKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNR 131 (624)
T ss_dssp HHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCS
T ss_pred HHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCc
Confidence 55556666666666655322 4666788999999999999999988887766533 33444578888998888
Q ss_pred cchHH
Q 047518 87 VSHGF 91 (256)
Q Consensus 87 ~~~a~ 91 (256)
+.+-.
T Consensus 132 L~elE 136 (624)
T 3lvg_A 132 LAELE 136 (624)
T ss_dssp SSTTT
T ss_pred HHHHH
Confidence 76543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=93.16 E-value=1 Score=28.71 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+.-+..+-++.+...++.|++......+++|.+.+++..|.++++-++.+ +.+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45567777888888888899999999999999999999999999988865 3344556766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.09 E-value=1 Score=28.62 Aligned_cols=73 Identities=10% Similarity=0.138 Sum_probs=50.3
Q ss_pred CCCCchHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047518 150 NVKPNVVTYTSVIRGFCYAND---WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 224 (256)
+..|+..+--.+.-++.+..+ ...++.+++++.+.+..-....+-.+.-++.+.|++++|.+..+.+.+. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 344566555555555555554 4568888888887652224566777788889999999999999998875 454
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=92.97 E-value=1.9 Score=31.24 Aligned_cols=121 Identities=10% Similarity=0.069 Sum_probs=79.6
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcC
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTHSILINCFCKMG 85 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 85 (256)
...++.|++++|+.....-.+..|. |...-..++..+|-.|+|++|.+-++...+... .|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 4467899999999999999887775 888889999999999999999999988876531 1223345555543
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL--CKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 149 (256)
+..=.++..-+-.|... .....-...++.+. ...|+.++|..+-....+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~---------g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVL---------GENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECC---------CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCC---------CCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22223333433333321 12222333444443 3468899998888877553
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.69 E-value=2.3 Score=31.62 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCCCCcHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA---NDWNEAKRLFIEMMDQGVQPNVVTFN 194 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (256)
.++..+..+...|.+.+++.+|...|-.-. .-+...+..++--+... |...++ +...-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHH
Confidence 477788888889999999988888775111 11344454444444333 333322 112122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
.++ .|.-.|+...|..+++...
T Consensus 194 aVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHH
Confidence 222 3445677777877777654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.51 E-value=5.6 Score=35.60 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=90.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC------------------CCchHHHHHHHHHHhccCCHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NV------------------KPNVVTYTSVIRGFCYANDWNE 173 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~------------------~~~~~~~~~li~~~~~~~~~~~ 173 (256)
++.++..--.+..+|...|++++|...|.+.... .. ..-..-|..++..+.+.+.++.
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~ 917 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 917 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence 4456555566778899999999999999875311 00 0011236778888889999999
Q ss_pred HHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHH
Q 047518 174 AKRLFIEMMDQGVQPN----VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 244 (256)
+.++-+...+....-+ ...|..+..++...|++++|-..+-.+..... -......++...+..|..+.-
T Consensus 918 vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 918 ALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 9988888775422212 23688889999999999999999988876533 456777787777777665544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=2.9 Score=32.25 Aligned_cols=113 Identities=6% Similarity=-0.036 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhC--CCC-Cch------------------HHHHHHHHHHhccCCHHH
Q 047518 118 PDAITYNTIIDGL---CKQGFVDKAKELFLKMKDK--NVK-PNV------------------VTYTSVIRGFCYANDWNE 173 (256)
Q Consensus 118 ~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~--~~~-~~~------------------~~~~~li~~~~~~~~~~~ 173 (256)
-|...|..++... ...|+.+.|...+.+.... |.. ++. .+...++..+...|++.+
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3555666665443 2468898998888887653 211 111 112344566778899999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHhHHHH
Q 047518 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-----HGVRPDAFTYNTL 231 (256)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 231 (256)
+...+..+.... +.+...|..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-...
T Consensus 190 a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 190 VIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 999999988764 55888999999999999999999999988754 5899998764443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.24 E-value=2.4 Score=33.24 Aligned_cols=97 Identities=14% Similarity=0.016 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCcHHH--HH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD---QGVQPNVVT--FN 194 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~ 194 (256)
+...+...|.+.|+++.|.+.|.++... +..--...+-.+++.+...+++..+...+.++.. .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4567889999999999999999999864 3333456778888999999999999999998763 232333221 11
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 047518 195 VIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.-...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 122234467889999988877654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=5.3 Score=33.01 Aligned_cols=213 Identities=10% Similarity=0.007 Sum_probs=119.7
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH--HHHHHHHhcC-----------
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF--VVLGRILRSC----------- 101 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~~~~~~~~~----------- 101 (256)
+...--....+....|+...|......+...| ......+..++..+.+.|.+.... .=++.+...|
T Consensus 101 ~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~ 179 (618)
T 1qsa_A 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (618)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333445666777888888888888887776 334566777777777666654422 1122222221
Q ss_pred CCCch----hhHHhhhh----------hcCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH----HHH
Q 047518 102 FTPDV----VTFTSLIK----------VCKPDAIT---YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT----YTS 160 (256)
Q Consensus 102 ~~~~~----~~~~~ll~----------~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 160 (256)
+.++. ..+..+.. ...++... +...+.-+.+ .+.+.|...+......... +... +..
T Consensus 180 l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 257 (618)
T 1qsa_A 180 MPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL-NEDQIQELRDI 257 (618)
T ss_dssp CCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC-CHHHHHHHHHH
Confidence 12222 11111111 11222221 1112222333 3789999999888654322 3222 223
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
+.......+...++...+....... ++.....-.+....+.|+++.|...|+.|.... .........+..++...|+
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~ 334 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGR 334 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCC
Confidence 3333344453456666666655442 344344445555567899999999999886532 2245556777788889999
Q ss_pred hhHHHHHHHHHHh
Q 047518 241 VNHAKELFVSMES 253 (256)
Q Consensus 241 ~~~a~~~~~~m~~ 253 (256)
.++|..+|+++.+
T Consensus 335 ~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 335 EAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.02 E-value=8.6e-05 Score=58.01 Aligned_cols=67 Identities=6% Similarity=-0.032 Sum_probs=50.9
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchh
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (256)
....|..+..+....+...+|++.| ++. -|+..|..++.+..+.|.+++-++++....+..-.|...
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID 119 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE 119 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH
Confidence 3456889999999888888877665 222 266778899999999999999999998877764444433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.88 E-value=4.9 Score=31.65 Aligned_cols=197 Identities=11% Similarity=0.119 Sum_probs=119.7
Q ss_pred CcCChhhHHHHHHHHHHhCC----CCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHH----
Q 047518 12 TTITPNEALCIFDYMLRMHP----SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFC---- 82 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~---- 82 (256)
..|+++.|++.+-.+.+... .+.+......++..|...|+++...+.+..+... |..+ .....+++.+.
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLK 105 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHh
Confidence 35789999888877665321 1134455778999999999999998888776543 3222 22233333222
Q ss_pred hcCCcchHHHHHHHHHhc--CCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCc---h
Q 047518 83 KMGRVSHGFVVLGRILRS--CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPN---V 155 (256)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~ 155 (256)
.....+... ....... ..... .+|.. .........|...|...|++.+|..++..+... |..+. .
T Consensus 106 ~~~~~d~~~--~~~~i~~l~~vte~-kiflE-----~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kv 177 (445)
T 4b4t_P 106 SSKSLDLNT--RISVIETIRVVTEN-KIFVE-----VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKI 177 (445)
T ss_dssp HHCTTHHHH--HHHHHHCCSSSSSC-CCCCC-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred cCCchhHHH--HHHHHHHHHHHhcc-chHHH-----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 222221111 1111110 00000 00000 001223456889999999999999999998642 22111 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 156 VTYTSVIRGFCYANDWNEAKRLFIEMMD----QGVQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
..+...++.|...+++..|..+++.+.. ....|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5677788899999999999999998752 222333 34567777888889999999888877753
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.85 E-value=2.5 Score=28.12 Aligned_cols=112 Identities=6% Similarity=0.053 Sum_probs=56.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCch-------HHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCc-HHHHHHH
Q 047518 127 IDGLCKQGFVDKAKELFLKMKDKN-VKPNV-------VTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPN-VVTFNVI 196 (256)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~l 196 (256)
+..+...+.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++.+... .-+. ..+...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 556667777777777776654321 11221 244555666777777777777777754321 0011 0011000
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 251 (256)
. .....+. ......+...-..+..||.+.|++++|+.+++.+
T Consensus 107 ~---~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 107 G---NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred c---ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0 0000000 0012223445555778888889999998887754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.72 E-value=5.1 Score=31.56 Aligned_cols=191 Identities=9% Similarity=0.033 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHhhC-----CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhc-CCCCchhhHHhhhhhcCCCHHHH
Q 047518 50 KHYDTVLSLFKRLNST-----GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLIKVCKPDAITY 123 (256)
Q Consensus 50 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~ 123 (256)
|+++.|++.+-.+.+. ...........++..|...++++...+.+.-+.+. |..+... . ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~----------~~V 97 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--Q----------YMI 97 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--H----------HHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--H----------HHH
Confidence 6778888777655432 23445667888999999999999988877766553 2221111 1 111
Q ss_pred HHHHHHHHhcCCHHHH--HHHHHHHHh--CC-CCC---chHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCc---H
Q 047518 124 NTIIDGLCKQGFVDKA--KELFLKMKD--KN-VKP---NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQPN---V 190 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~ 190 (256)
..++.........+.. ..+.+.+.. .| +.. .......|...+...|++.+|..++..+... +..+. .
T Consensus 98 ~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kv 177 (445)
T 4b4t_P 98 QKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKI 177 (445)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 2223333333333322 222222211 11 111 2233456778899999999999999998742 22221 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 191 VTFNVIMDELCKNGKMDEASSLLDLMIQ----HGVRPDA--FTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
..+...++.|...+++.+|..++.++.. ...+|+. ..+...+..+...+++.+|.+.|.+..
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5677788899999999999999988742 2222222 245666777778899998888776654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.65 E-value=1.7 Score=26.00 Aligned_cols=88 Identities=10% Similarity=0.013 Sum_probs=61.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
-....++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.. ..||...|.++.. .+.|-.+++..
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 34568899999988888754 3333333445667889999998876544 4788888877643 48888888888
Q ss_pred HHHHHHHCCCCCCHHhH
Q 047518 212 LLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 212 ~~~~~~~~~~~~~~~~~ 228 (256)
-+.++...| .|....|
T Consensus 90 rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTCS-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 888888776 3443333
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.53 E-value=1.8 Score=25.98 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=61.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 047518 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211 (256)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 211 (256)
-....++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.. ..||...|.++.. .+.|-.+++..
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 34568899999888888754 3333333445667889999998876554 4788888877644 47888888888
Q ss_pred HHHHHHHCCCCCCHHhH
Q 047518 212 LLDLMIQHGVRPDAFTY 228 (256)
Q Consensus 212 ~~~~~~~~~~~~~~~~~ 228 (256)
-+.++...| .|....|
T Consensus 91 rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCC-CHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 887887765 3443333
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.46 E-value=1.8 Score=25.92 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (256)
..++|..+-+-+...+. ....-.+=+..+...|++++|..+.+.+ ..||...|.+|.. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554432 2112222234455666666666655443 2456555555533 35555555555555
Q ss_pred HHHhc
Q 047518 250 SMESM 254 (256)
Q Consensus 250 ~m~~~ 254 (256)
++-.+
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 54443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.36 E-value=3.9 Score=29.63 Aligned_cols=113 Identities=14% Similarity=0.207 Sum_probs=73.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhc
Q 047518 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKN 203 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~ 203 (256)
....+.|.+++|+.....-.+..+. |...-..+++.+|-.|+|+.|.+-++...+. .|+. .+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 3456789999999999888777544 7777788899999999999999999888876 3442 234444433
Q ss_pred CChhHHHHHHHHHHHCCC-----CCCHHhHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 047518 204 GKMDEASSLLDLMIQHGV-----RPDAFTYNTLLDGFC--LTGRVNHAKELFVSMES 253 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 253 (256)
+..=.++..-+- .....-...++.+.. ..|+.++|.++-.+..+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 111222222111 122334455555543 45898888888776643
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.25 E-value=1.9 Score=25.86 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047518 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248 (256)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (256)
...++|..+-+-+...+. ....-.+=+..+...|++++|..+.+.+. .||...|.+|.. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345566666555555432 22222222344566777777766665442 566666665543 3556666665555
Q ss_pred HHHHhcC
Q 047518 249 VSMESMG 255 (256)
Q Consensus 249 ~~m~~~g 255 (256)
.++-.+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5554433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.94 E-value=5.9 Score=31.03 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD--- 148 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 148 (256)
.++..+...|.+.|+++.|.+.|.++......+. .-...+-..+..+...+++..+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~------------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~ 199 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG------------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE 199 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC------------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 3677889999999999999999999987533222 2245677788999999999999999998754
Q ss_pred CCCCCchHH--HHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 149 KNVKPNVVT--YTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 149 ~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
.+..|+... ...-...+...+++..|...|-+....
T Consensus 200 ~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 200 KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 232233221 111112235678899998888777644
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.76 E-value=2.8 Score=27.06 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047518 152 KPNVVTYTSVIRGFCYAND---WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224 (256)
Q Consensus 152 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 224 (256)
.|+..+--.+.-++.+..+ ..+++.+++.+.+.+..-.......+.-++.+.|++++|.+..+.+.+. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 4566665556666666554 4578888888887643334556667778899999999999999999985 554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.75 E-value=3.1 Score=27.62 Aligned_cols=120 Identities=11% Similarity=0.024 Sum_probs=64.4
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhh---hcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIK---VCKPDA-------ITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKP 153 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 153 (256)
|..-.-++-.+.+.+.+.-.+......++. ...++. .++..+.+++...+++..|...|++..+.. .-+
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 333444556666777766666555555433 223332 266778899999999999999999864321 111
Q ss_pred -chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 154 -NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217 (256)
Q Consensus 154 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (256)
+..++..+- ....... ......+...--.+..+|.+.+++++|+.+++.+.
T Consensus 98 k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 98 KTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111111110 0000000 01122344555557788888999999988887654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.87 E-value=11 Score=32.83 Aligned_cols=55 Identities=11% Similarity=-0.121 Sum_probs=27.8
Q ss_pred CCCcCChhhHHHHHHHHHHhC-CCCCCcccHHHHHHHHHccCChHHHHHHHHHHhh
Q 047518 10 DITTITPNEALCIFDYMLRMH-PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS 64 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 64 (256)
.+..|+.++++.+++.....+ ...+....-..+.-+....|..+++..++.....
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~ 439 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV 439 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Confidence 345677777777766654321 1101112223344455566666667766665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.04 E-value=3.6 Score=26.17 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 118 PDAITYNTIIDGLCKQGFV---DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
++..+-..+.-++.++.+. .+++.++..+...+..-....+--+.-++.+.|+++.|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3334333344444444332 244444444444331112223333444455555555555555555543
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=87.52 E-value=1.7 Score=28.45 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchh
Q 047518 53 DTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (256)
+++..+|..|...|+... ...|......+-..|++++|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 458999999999987644 4578888888899999999999999999988888654
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.32 E-value=2.3 Score=29.26 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=47.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchh
Q 047518 49 NKHYDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107 (256)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (256)
.+....+..+|..|...|+.-. ...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4457789999999988876544 4577888888888999999999999999888777654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.86 E-value=14 Score=31.47 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=25.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 047518 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181 (256)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 181 (256)
.+...|+++.|+.+-++....-+ -+-.+|-.|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445555555555555544321 13345555555555555555555544443
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=86.81 E-value=8.3 Score=29.36 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK--MDEASSLLDLMIQHGVRPDAFTYNTLLDG 234 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (256)
....++.-|...++.++|.+.++++..-... .......+..++-+.++ .+...+++..+.+.|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4577888888999999999999988632211 23344455555554433 45677888888877765444443333333
Q ss_pred HHhcC----ChhHHHHHHHHHH
Q 047518 235 FCLTG----RVNHAKELFVSME 252 (256)
Q Consensus 235 ~~~~g----~~~~a~~~~~~m~ 252 (256)
+.... +...|..++.++.
T Consensus 298 l~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHhccHhhcccccHHHHHHHHH
Confidence 33222 3444555544443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.51 E-value=8.7 Score=28.91 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHh
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF----LKMKD 148 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~ 148 (256)
+|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++- +...+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------------------------~ll~~~Q~~sg~DL~~llvevy~~ 87 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-----------------------------TLLRSGQGGSGGDLAVLLVDTFRQ 87 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-----------------------------HHHHCCCcchHHHHHHHHHHHHHH
Confidence 445555556667777777766544322 233344444333333 33344
Q ss_pred CCCCCchHHHHHHHHHHhccCCHH-HHHHHHHHHH----HcC--CCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 047518 149 KNVKPNVVTYTSVIRGFCYANDWN-EAKRLFIEMM----DQG--VQPNVVTFNVIMDELCKNGKMDEASSLL 213 (256)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 213 (256)
.+++++......++..+......+ .=..++++++ +.| ..-|......+...|.+.+++.+|+.-|
T Consensus 88 ~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 88 AGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 455556555555555554443211 1122222222 111 1224445555566666666655554443
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=85.96 E-value=2.3 Score=28.27 Aligned_cols=56 Identities=7% Similarity=-0.002 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhh
Q 047518 53 DTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108 (256)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 108 (256)
+.+..+|..|...|+... ...|......+-..|++.+|.++|+.-++.+-.|....
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 457889999999887654 45788888888899999999999999999988887553
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.25 E-value=8.1 Score=26.60 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=53.9
Q ss_pred CCCHhhHHHHHHHHHh--cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047518 68 FPDLYTHSILINCFCK--MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145 (256)
Q Consensus 68 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (256)
.-|..-....+..--. .+....+..+|..|...|+... ....|......+...|++.+|..+|..
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~-------------~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTK-------------LSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTT-------------BHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHH-------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455444433332222 3446689999999999877644 344688888899999999999999999
Q ss_pred HHhCCCCCch
Q 047518 146 MKDKNVKPNV 155 (256)
Q Consensus 146 ~~~~~~~~~~ 155 (256)
-.+.+-.|-.
T Consensus 141 GI~~~A~P~~ 150 (202)
T 3esl_A 141 GAENNCRPYN 150 (202)
T ss_dssp HHHTTCBSHH
T ss_pred HHHcCCccHH
Confidence 9998777754
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.54 E-value=7.7 Score=25.04 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 118 PDAITYNTIIDGLCKQGFV---DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
++..+-..+.-++.++... .+++.+++.+...+..-.....--+.-++.+.|+++.|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555555555543 355566666555432222333334445666667777777666666664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.29 E-value=27 Score=30.56 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=39.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHH---HHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYT---SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 206 (256)
+...|+.+.+..+.+.+.... .|. .-|. .+..+|+..|+.....+++..+.+.. ..+.+....+.-++...|+.
T Consensus 534 ll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 534 LINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred hhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 345566666666666655431 111 1122 22334556666655555666655431 22333333333333345555
Q ss_pred hHHHHHHHHHHH
Q 047518 207 DEASSLLDLMIQ 218 (256)
Q Consensus 207 ~~a~~~~~~~~~ 218 (256)
+.+.++++.+.+
T Consensus 611 e~v~rlv~~L~~ 622 (963)
T 4ady_A 611 TTVPRIVQLLSK 622 (963)
T ss_dssp SSHHHHTTTGGG
T ss_pred HHHHHHHHHHHh
Confidence 555555554443
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=80.42 E-value=3.6 Score=28.84 Aligned_cols=56 Identities=18% Similarity=0.051 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchh
Q 047518 52 YDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107 (256)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 107 (256)
.+.+..+|..|...|+.-. ...|......+-..|++.+|..+|+.-++.+-.|-..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3578899999999987654 4578888888899999999999999999988888654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.81 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.76 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.53 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.49 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.39 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.39 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.33 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.32 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.29 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.16 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.08 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.05 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.05 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.01 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.98 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.91 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.91 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.88 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.75 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.68 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.66 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.58 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.58 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.55 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.42 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.4 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.38 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.34 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.32 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.31 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.29 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.24 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.09 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.08 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.94 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.8 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.57 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.48 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.39 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.33 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.91 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.9 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.77 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 96.05 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.24 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.16 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 94.67 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.89 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4e-19 Score=135.50 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=81.3
Q ss_pred ccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047518 4 KSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83 (256)
Q Consensus 4 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (256)
...|..+.+.|++++|++.|+++.+..|. +..++..+...+.+.|++++|...|++..+.. +-+..+|..+..+|.+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhh
Confidence 34455677889999999999999998765 77889999999999999999999999998764 3356789999999999
Q ss_pred cCCcchHHHHHHHHHhc
Q 047518 84 MGRVSHGFVVLGRILRS 100 (256)
Q Consensus 84 ~~~~~~a~~~~~~~~~~ 100 (256)
.|++++|+..+....+.
T Consensus 80 ~g~~~~A~~~~~~~~~~ 96 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccc
Confidence 99999999999888765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4.3e-18 Score=127.29 Aligned_cols=240 Identities=14% Similarity=0.107 Sum_probs=183.9
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+.+.|++++|+..|+++.+..|. +..+|..+..++...|+++.|...|++..+.. +-+...|..+..+|...|+
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 45678899999999999999997775 78889999999999999999999999998764 3356788889999999999
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHhhhh--hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHHH
Q 047518 87 VSHGFVVLGRILRSCFTPDVVTFTSLIK--VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIR 163 (256)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~ 163 (256)
+++|.+.++++.... |+......... ....+.......+..+...+.+.+|...|........ .++..++..+..
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999988742 22111100000 0001111122233344556778888888888765432 235667788888
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (256)
.+...|++++|...+++..... +-+...|..+..++...|++++|.+.|++..+.. +-+..++..+..+|.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999999998764 3357788899999999999999999999988753 3467788999999999999999
Q ss_pred HHHHHHHHHh
Q 047518 244 AKELFVSMES 253 (256)
Q Consensus 244 a~~~~~~m~~ 253 (256)
|++.|++.++
T Consensus 259 A~~~~~~al~ 268 (323)
T d1fcha_ 259 AVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=6.5e-16 Score=117.47 Aligned_cols=220 Identities=12% Similarity=0.055 Sum_probs=143.4
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 92 (256)
.+....+...+.......+. +...+..+...+...|+++.|...++...+.. +.+...|..+...+...|++++|+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 224 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred cchhhhhHHHHHHhhccCcc--hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHH
Confidence 44555666666666655543 55566666777777777777777777766543 2245566667777777777777777
Q ss_pred HHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHH
Q 047518 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 172 (256)
.+++..... +.+...+..+...+.+.|++++|...|++..+.... +..++..+...+...|+++
T Consensus 225 ~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~ 288 (388)
T d1w3ba_ 225 AYLRALSLS---------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHH
T ss_pred HHHHhHHHh---------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 777666532 234455666667777777777777777776665432 4556666777777777777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+|...++...... +.+...+..+...+...|++++|...|++..+.. +-+..++..+..+|.+.|++++|.+.+++..
T Consensus 289 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 289 EAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777766653 4455666677777777777777777777766542 3345566667777777777777777777665
Q ss_pred h
Q 047518 253 S 253 (256)
Q Consensus 253 ~ 253 (256)
+
T Consensus 367 ~ 367 (388)
T d1w3ba_ 367 R 367 (388)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=8.8e-13 Score=97.97 Aligned_cols=221 Identities=10% Similarity=0.043 Sum_probs=167.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHh--------------
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-------------- 72 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------- 72 (256)
|..+...|++++|+..|++..+..|. +...|..+...+...|++++|.+.++...... |+..
T Consensus 60 g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 135 (323)
T d1fcha_ 60 GTTQAENEQELLAISALRRCLELKPD--NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAG 135 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------
T ss_pred HHHHHHcCChHHHHHHHHhhhccccc--cccccccccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcc
Confidence 44567789999999999999998775 77889999999999999999999999987653 2211
Q ss_pred --hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047518 73 --THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150 (256)
Q Consensus 73 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (256)
.....+..+...+.+.++...+.+..+. .|+ ..+..++..+...+...|++++|...|++.....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 202 (323)
T d1fcha_ 136 LGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPT-----------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202 (323)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHH--STT-----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHhhHHHHHHHHHHHHHHH--hhc-----------ccccccchhhHHHHHHHHHHhhhhcccccccccc
Confidence 0111222333445566777777776653 121 2456678888999999999999999999988765
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----------C
Q 047518 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH----------G 220 (256)
Q Consensus 151 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~ 220 (256)
.. +..+|..+...+...|++++|...+++..+.. +-+..+|..+..+|.+.|++++|...|++..+. .
T Consensus 203 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 280 (323)
T d1fcha_ 203 PN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280 (323)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred cc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhh
Confidence 43 67788999999999999999999999999864 335778999999999999999999999988752 1
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHH
Q 047518 221 VRPDAFTYNTLLDGFCLTGRVNHAKE 246 (256)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (256)
.......|..+-.++...|+.+.+..
T Consensus 281 ~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 281 GAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 12223456666677777777765543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=1.1e-11 Score=91.46 Aligned_cols=221 Identities=10% Similarity=0.070 Sum_probs=170.8
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc--------------CChHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN--------------KHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (256)
..+++..+|+++....+. +...|...+..+.+. +..+.|..+|++..+...+.+...|...+..
T Consensus 31 ~~~Rv~~vyerAl~~~~~--~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 31 ITKRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 356688899999887665 566777766654332 3357888999998876545566788888889
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 047518 81 FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160 (256)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (256)
..+.|+++.|..+|+++++.. | .....+|...+....+.|+++.|..+|..+.+.+.. +...|..
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~--~------------~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~ 173 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIE--D------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVT 173 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSS--S------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHh--c------------CChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 999999999999999998741 1 112346888899999999999999999999887543 4444444
Q ss_pred HHHH-HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--HHhHHHHHHHHH
Q 047518 161 VIRG-FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPD--AFTYNTLLDGFC 236 (256)
Q Consensus 161 li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~ 236 (256)
.... +...|+.+.|..+++.+.+.. +.+...|...+..+...|+++.|..+|++..+.. ..|. ...|...+..-.
T Consensus 174 ~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~ 252 (308)
T d2onda1 174 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 4332 345689999999999999873 4567899999999999999999999999988753 3332 457888888778
Q ss_pred hcCChhHHHHHHHHHHh
Q 047518 237 LTGRVNHAKELFVSMES 253 (256)
Q Consensus 237 ~~g~~~~a~~~~~~m~~ 253 (256)
..|+.+.+.++.+++.+
T Consensus 253 ~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 253 NIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 89999999999998764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.6e-11 Score=89.67 Aligned_cols=207 Identities=8% Similarity=0.032 Sum_probs=163.8
Q ss_pred CCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC-ChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcc
Q 047518 10 DITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88 (256)
Q Consensus 10 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (256)
+.+.+.+++|+++++++++..|. +..+|+....++...| ++++|+..++...+.. +-+..+|..+..++.+.|+++
T Consensus 53 ~~~~e~~~~Al~~~~~ai~lnP~--~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~ 129 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPS 129 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCT
T ss_pred HHhCCchHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHH
Confidence 34678899999999999998886 8888999999988876 5899999999998774 346789999999999999999
Q ss_pred hHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 047518 89 HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168 (256)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (256)
+|+..+.++.+. .+.+..+|..+...+...|++++|+..++.+.+.++. +...|+.+...+.+.
T Consensus 130 eAl~~~~kal~~---------------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 130 QELEFIADILNQ---------------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 193 (315)
T ss_dssp THHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhh---------------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHc
Confidence 999999999984 2456788999999999999999999999999988654 667787776666555
Q ss_pred CC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHh
Q 047518 169 ND------WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTLLDGFCL 237 (256)
Q Consensus 169 ~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 237 (256)
+. +++|+..+....+.. +.+...|..+...+.. ...+++.+.++...+... ..+...+..++..|..
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred cccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 54 678999999888874 3467777777665544 456788888887765322 2245566667777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.8e-11 Score=87.34 Aligned_cols=197 Identities=7% Similarity=0.031 Sum_probs=158.4
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-CcchHHHHHHHHHhcCCCCchhhHHhhhhh
Q 047518 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG-RVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115 (256)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 115 (256)
..|+.+...+.+.+.+++|+.+++++++.. +-+...|+....++...| ++++|+..++++++.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--------------- 107 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------------- 107 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---------------
Confidence 456677778889999999999999999874 335678898888888876 489999999999875
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 047518 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195 (256)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (256)
.+.+..+|..+...+.+.|++++|+..+..+.+.... +..+|..+...+...|++++|+..++.+++.+ +-+...|+.
T Consensus 108 ~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~ 185 (315)
T d2h6fa1 108 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQ 185 (315)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHH
Confidence 2456788999999999999999999999999987654 78899999999999999999999999999875 336778888
Q ss_pred HHHHHHhcCC------hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 196 IMDELCKNGK------MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 196 ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+...+.+.+. +++|...+....+.. +.+...|..+...+... ..+++.+.++...+
T Consensus 186 r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 186 RYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHH
T ss_pred HHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 7777777665 567888888887753 44677777776665544 45667776666543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.6e-11 Score=88.10 Aligned_cols=226 Identities=9% Similarity=-0.073 Sum_probs=148.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCC--CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
+..+....+.+.++.-+++........ -...+|..+...|.+.|++++|+..|++..+.. +-+..+|..+..++.+.
T Consensus 6 ~~~~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~ 84 (259)
T d1xnfa_ 6 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 84 (259)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred hhcccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHH
Confidence 445556667778888888887644321 123467778889999999999999999998764 34677899999999999
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (256)
|++++|+..|+++.+.. +.+..++..+..+|...|++++|...|+...+..+. +......+..+
T Consensus 85 g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 148 (259)
T d1xnfa_ 85 GNFDAAYEAFDSVLELD---------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLA 148 (259)
T ss_dssp TCHHHHHHHHHHHHHHC---------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHH---------------hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHH
Confidence 99999999999998852 234567888889999999999999999998876532 44444444445
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcC
Q 047518 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK----MDEASSLLDLMIQHGVRP-DAFTYNTLLDGFCLTG 239 (256)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 239 (256)
+.+.+..+....+........ ++...+.. +..+..... .+.+...+...... .| ...+|..+...|...|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g 223 (259)
T d1xnfa_ 149 EQKLDEKQAKEVLKQHFEKSD--KEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLG 223 (259)
T ss_dssp HHHHCHHHHHHHHHHHHHHSC--CCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhHHHHHHHHHHhhccc--hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCC
Confidence 555566555555555555432 22222221 222211111 11111111111110 11 2245667788888889
Q ss_pred ChhHHHHHHHHHHhc
Q 047518 240 RVNHAKELFVSMESM 254 (256)
Q Consensus 240 ~~~~a~~~~~~m~~~ 254 (256)
++++|.+.|++.++.
T Consensus 224 ~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 224 DLDSATALFKLAVAN 238 (259)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999888887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=4.2e-10 Score=82.82 Aligned_cols=190 Identities=12% Similarity=0.073 Sum_probs=150.7
Q ss_pred CcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 047518 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91 (256)
Q Consensus 12 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 91 (256)
..+..++|..+|++..+..++ .+...|...+....+.|+++.|..+|+.+.+........+|...+..+.+.|+++.|.
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p-~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar 154 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHH
Confidence 344568899999998875433 4667788899999999999999999999987643333457899999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC
Q 047518 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDG-LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 170 (256)
++|+++.+.+ +.+...|...... +...|+.+.|..+|+.+.... +.+...|...++.....|+
T Consensus 155 ~i~~~al~~~---------------~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~ 218 (308)
T d2onda1 155 MIFKKAREDA---------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNE 218 (308)
T ss_dssp HHHHHHHTST---------------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhC---------------CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCC
Confidence 9999998753 2233344433333 445689999999999998863 3367889999999999999
Q ss_pred HHHHHHHHHHHHHcC-CCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 171 WNEAKRLFIEMMDQG-VQPN--VVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 171 ~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+.|..+|++..+.. ..|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 219 ~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 219 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999998763 3333 45788888888899999999999998865
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=2.9e-11 Score=86.69 Aligned_cols=192 Identities=14% Similarity=0.013 Sum_probs=133.9
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|..|.+.|++++|+..|++..+..|. ++.+|+.+..++.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 119 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGG 119 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHhhccCCC--CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHh
Confidence 355677899999999999999998876 78889999999999999999999999998864 235668888999999999
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (256)
++++|...+++..+.. | .+......+...+.+.+..+.+..+.......... ...++ ++..+
T Consensus 120 ~~~~A~~~~~~al~~~--p-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~ 181 (259)
T d1xnfa_ 120 RDKLAQDDLLAFYQDD--P-------------NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE--QWGWN-IVEFY 181 (259)
T ss_dssp CHHHHHHHHHHHHHHC--T-------------TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC--STHHH-HHHHH
T ss_pred hHHHHHHHHHHHHhhc--c-------------ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh--hhhhh-HHHHH
Confidence 9999999999998752 2 23333344445556666666666666665554322 22222 22222
Q ss_pred hccCC----HHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047518 166 CYAND----WNEAKRLFIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220 (256)
Q Consensus 166 ~~~~~----~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (256)
..... .+.+...+...... .| ...+|..+...+...|++++|.+.|+......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 182 LGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp TTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22111 22222222221111 12 23467778899999999999999999998763
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=4.3e-10 Score=83.79 Aligned_cols=246 Identities=11% Similarity=0.084 Sum_probs=159.2
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCC---cccHHHHHHHHHccCChHHHHHHHHHHhhCC----CCC-CHhhHHHHHH
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPP---VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG----LFP-DLYTHSILIN 79 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~ 79 (256)
..+...|++++|+++|++.....|..++ ..++..+...+...|++++|...+++..+.. ..+ ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 3456789999999999999887654221 2356778889999999999999999876531 111 1235666777
Q ss_pred HHHhcCCcchHHHHHHHHHhc----CCCCchhh--HHhhhh--------------------------hcCCCHHHHHHHH
Q 047518 80 CFCKMGRVSHGFVVLGRILRS----CFTPDVVT--FTSLIK--------------------------VCKPDAITYNTII 127 (256)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~--~~~ll~--------------------------~~~~~~~~~~~l~ 127 (256)
.+...|++..+...+.+.... +....... ....+. ........+..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 888899999999888876542 11111110 000000 1111223444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---cHHHHHHHHH
Q 047518 128 DGLCKQGFVDKAKELFLKMKDK----NVKP--NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP---NVVTFNVIMD 198 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~ 198 (256)
..+...+++..+...+...... +..+ ....+..+...+...|++++|...++......... ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 5556666666666666554321 1111 12234555566778888888888888776542222 2345666788
Q ss_pred HHHhcCChhHHHHHHHHHHH----CCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 199 ELCKNGKMDEASSLLDLMIQ----HGVRPD-AFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
++...|++++|...++.... .+..|+ ...+..+..+|.+.|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999988763 333333 34677888899999999999999887653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=8.1e-12 Score=93.25 Aligned_cols=220 Identities=6% Similarity=-0.017 Sum_probs=124.6
Q ss_pred CCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC--hHHHHHHHHHHhhCCCCCCHhhH-HHHHHHHHhc
Q 047518 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH--YDTVLSLFKRLNSTGLFPDLYTH-SILINCFCKM 84 (256)
Q Consensus 8 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 84 (256)
..+...|++++|+..|+...+..|. +...|..+..++...++ +++|...++.+.+.. +++...+ ......+...
T Consensus 81 ~~~~~~~~~~~al~~~~~~l~~~pk--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~ 157 (334)
T d1dcea1 81 SPEESAALVKAELGFLESCLRVNPK--SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAA 157 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCC--cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhc
Confidence 3344566788999999999998775 77788888877777664 789999999998764 3345554 4455677788
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (256)
+.+++|+..++.+++.. +.+..+|+.+..++.+.|++++|...+....... |.. ......
T Consensus 158 ~~~~~Al~~~~~~i~~~---------------p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~---~~~~~~ 217 (334)
T d1dcea1 158 VAPAEELAFTDSLITRN---------------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LKE---LELVQN 217 (334)
T ss_dssp CCHHHHHHHHHTTTTTT---------------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HHH---HHHHHH
T ss_pred cccHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HHH---HHHHHH
Confidence 99999999998887752 2355667777777777777665544443322210 010 111112
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHH
Q 047518 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244 (256)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 244 (256)
+...+..+++...+....... +++...+..+...+...|+..+|...+.+..+.. +.+...+..+..+|...|+.++|
T Consensus 218 ~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA 295 (334)
T d1dcea1 218 AFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKET 295 (334)
T ss_dssp HHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHH
T ss_pred HHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHH
Confidence 223334444444444444332 1222333333444444444444444444443321 11233444444444455555555
Q ss_pred HHHHHHHH
Q 047518 245 KELFVSME 252 (256)
Q Consensus 245 ~~~~~~m~ 252 (256)
.+.+++..
T Consensus 296 ~~~~~~ai 303 (334)
T d1dcea1 296 LQYFSTLK 303 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.3e-10 Score=71.52 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=87.1
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (256)
.|...|..++..|++++|+..|++.++..|. +...|..+..++...|++++|+..++...+.. +.+...|..+..++
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHH
Confidence 3556778889999999999999999998876 88899999999999999999999999998875 45778999999999
Q ss_pred HhcCCcchHHHHHHHHHhc
Q 047518 82 CKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~ 100 (256)
...|++++|+..|++..+.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999999975
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=5.1e-10 Score=76.37 Aligned_cols=142 Identities=13% Similarity=-0.047 Sum_probs=104.7
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (256)
.|..+...|+++.|++.|+++ .+++..+|..+..++...|+++.|++.|++..+.. +.+...|..+..++.+.|
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhc
Confidence 455567889999999999864 22677889999999999999999999999998875 346779999999999999
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHhhhhhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047518 86 RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP-DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153 (256)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (256)
++++|+..|++.+..........+..+-..... ...++..+..++.+.|++++|...+.........+
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999998764211111111111000111 13456667778888899999988888877765544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.5e-08 Score=67.76 Aligned_cols=130 Identities=12% Similarity=0.031 Sum_probs=96.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCC
Q 047518 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118 (256)
Q Consensus 39 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 118 (256)
|+. ...+...|+++.|++.|+.+. +|+..+|..+..+|...|++++|+..|++.++.. +.
T Consensus 9 ~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld---------------p~ 68 (192)
T d1hh8a_ 9 WNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---------------KH 68 (192)
T ss_dssp HHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TT
T ss_pred HHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---------------hh
Confidence 443 556678899999999998653 4677788889999999999999999999998742 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------------C-chHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--------------P-NVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
+...|..+..+|.+.|++++|...|++....... + ...++..+..++.+.|++++|.+.+....+
T Consensus 69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6778888999999999999999999887643111 0 123445566677777888888877777776
Q ss_pred cCCCC
Q 047518 184 QGVQP 188 (256)
Q Consensus 184 ~~~~~ 188 (256)
....+
T Consensus 149 ~~~~~ 153 (192)
T d1hh8a_ 149 MKSEP 153 (192)
T ss_dssp TCCSG
T ss_pred cCCCc
Confidence 54443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=1.4e-08 Score=73.88 Aligned_cols=205 Identities=10% Similarity=-0.023 Sum_probs=140.7
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhC----CCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhh
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 112 (256)
.|......|...|++++|.+.|++..+. +-+++ ..+|..+..+|.+.|++++|+..+++..+......
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~------- 111 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG------- 111 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc-------
Confidence 4667788899999999999999987543 22222 35889999999999999999999998776311110
Q ss_pred hhhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhC----CCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 047518 113 IKVCKPDAITYNTIIDGLCK-QGFVDKAKELFLKMKDK----NVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186 (256)
Q Consensus 113 l~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 186 (256)
.......++..+...|.. .|++++|+..|.+..+. +.++ ...++..+...+...|++++|...++++.....
T Consensus 112 --~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~ 189 (290)
T d1qqea_ 112 --QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (290)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred --cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence 001123456667777754 69999999999987532 2211 235678889999999999999999999886532
Q ss_pred CCc------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC---HHhHHHHHHHHHh--cCChhHHHHHHHHH
Q 047518 187 QPN------VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR-PD---AFTYNTLLDGFCL--TGRVNHAKELFVSM 251 (256)
Q Consensus 187 ~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g~~~~a~~~~~~m 251 (256)
... ...+...+.++...|+++.|...++...+.... ++ ......++.++.. .+.+++|+..|+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred cchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 211 122345556677899999999999998765211 11 2345666677655 24577777766543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1e-09 Score=72.49 Aligned_cols=96 Identities=9% Similarity=0.070 Sum_probs=85.0
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (256)
+|...|..+.+.|++++|+..|++..+..|. +...|..+..++...|+++.|+..|+...+.. +-+..+|..+..++
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchh--hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHH
Confidence 4556677889999999999999999998875 88889999999999999999999999998874 34667999999999
Q ss_pred HhcCCcchHHHHHHHHHhc
Q 047518 82 CKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~ 100 (256)
...|++++|...+++..+.
T Consensus 89 ~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999885
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=6.2e-08 Score=70.32 Aligned_cols=208 Identities=8% Similarity=-0.056 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHH
Q 047518 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97 (256)
Q Consensus 18 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 97 (256)
++.+++++..+.+.. ....+. ++.. ...+++++|.++|.+ ....|...+++++|...|.++
T Consensus 3 ~~~~~l~~aek~~~~--~~~~~~-~~~~-~~~~~~~~Aa~~y~~---------------aa~~y~~~~~~~~A~~~y~kA 63 (290)
T d1qqea_ 3 DPVELLKRAEKKGVP--SSGFMK-LFSG-SDSYKFEEAADLCVQ---------------AATIYRLRKELNLAGDSFLKA 63 (290)
T ss_dssp CHHHHHHHHHHHSSC--CCTHHH-HHSC-CSHHHHHHHHHHHHH---------------HHHHHHHTTCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCc--chhHHH-HhcC-CccccHHHHHHHHHH---------------HHHHHHHCcCHHHHHHHHHHH
Confidence 566777776665543 332222 2211 223346777776655 466788999999999999998
Q ss_pred HhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCchHHHHHHHHHHh-ccCCH
Q 047518 98 LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK----NV-KPNVVTYTSVIRGFC-YANDW 171 (256)
Q Consensus 98 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~-~~~~~ 171 (256)
.+...... .......+|..+..+|.+.|++++|...++..... |. .....++..+...|. ..|++
T Consensus 64 ~~~~~~~~---------~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 134 (290)
T d1qqea_ 64 ADYQKKAG---------NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY 134 (290)
T ss_dssp HHHHHHTT---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHcC---------CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHH
Confidence 76311000 00112357888999999999999999999976542 21 112345566666664 46999
Q ss_pred HHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----H-HhHHHHHHHHHhcCC
Q 047518 172 NEAKRLFIEMMDQ----GVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD-----A-FTYNTLLDGFCLTGR 240 (256)
Q Consensus 172 ~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~ 240 (256)
++|...+++..+. +..+ ...++..+...+...|++++|...|+++........ . ..+...+.++...|+
T Consensus 135 ~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 214 (290)
T d1qqea_ 135 AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD 214 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc
Confidence 9999999987642 2111 145678889999999999999999999886431111 1 234455667778899
Q ss_pred hhHHHHHHHHHHh
Q 047518 241 VNHAKELFVSMES 253 (256)
Q Consensus 241 ~~~a~~~~~~m~~ 253 (256)
++.|...+++..+
T Consensus 215 ~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 215 AVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=8.5e-10 Score=75.76 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=85.6
Q ss_pred ccccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 047518 2 RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81 (256)
Q Consensus 2 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (256)
.|...|..+.+.|++++|+..|++.+...|. +...|..+..+|.+.|+++.|+..|+...+.. +-+..+|..+..+|
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~--~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 4566788899999999999999999998875 88899999999999999999999999998763 23567899999999
Q ss_pred HhcCCcchHHHHHHHHHhc
Q 047518 82 CKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~ 100 (256)
...|++++|+..|+++.+.
T Consensus 83 ~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh
Confidence 9999999999999998763
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=4.9e-07 Score=66.74 Aligned_cols=215 Identities=11% Similarity=-0.003 Sum_probs=138.1
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-Cch-hhHHh
Q 047518 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD----LYTHSILINCFCKMGRVSHGFVVLGRILRSCFT-PDV-VTFTS 111 (256)
Q Consensus 38 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~~~~ 111 (256)
........+...|++++|++++++..+.....+ ...+..+..++...|++++|...+++..+.... ++. .....
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344556778899999999999999877532111 236777888999999999999999988763111 111 00000
Q ss_pred hhh----------------------------hcC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCchH
Q 047518 112 LIK----------------------------VCK--P-DAITYNTIIDGLCKQGFVDKAKELFLKMKDKN----VKPNVV 156 (256)
Q Consensus 112 ll~----------------------------~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 156 (256)
... ... + ....+..+...+...|+++.+...+....... ......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 000 000 1 11244556667777888888887777765432 222334
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHh
Q 047518 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQP--NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP---DAFT 227 (256)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~ 227 (256)
++......+...++...+...+.+.... +..+ ....+......+...|++++|...+....+..... ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 4555556667777777777777665532 1111 12345666677888999999999988776542222 2345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047518 228 YNTLLDGFCLTGRVNHAKELFVSME 252 (256)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~m~ 252 (256)
+..+..++...|++++|...+++..
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al 278 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELN 278 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6667888999999999999998875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.9e-07 Score=57.80 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=86.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 047518 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205 (256)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 205 (256)
-...+.+.|++++|+..|.+..+..+. +...|..+..+|...|++++|+..+....+.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 466788999999999999999887544 77889999999999999999999999999875 4578889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 206 MDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
+++|...|+...+.. +-+...+..+
T Consensus 87 ~~~A~~~~~~a~~~~-p~~~~~~~~l 111 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE-ANNPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999763 2344444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.4e-07 Score=62.00 Aligned_cols=121 Identities=10% Similarity=0.017 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 203 (256)
......|.+.|++++|+..|.+..+.... +...|..+..+|...|++++|...++..++.. +-+...|..+..++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 34567889999999999999999988654 78889999999999999999999999999875 44678999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHH--HHhcCChhHHHHH
Q 047518 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDG--FCLTGRVNHAKEL 247 (256)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~ 247 (256)
|++++|...+++..... +-+...+..+..+ ....+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999998863 3345555444433 2334445555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=2.5e-08 Score=73.91 Aligned_cols=215 Identities=7% Similarity=-0.050 Sum_probs=146.6
Q ss_pred ChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHH----------ccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047518 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLA----------KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84 (256)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (256)
..++|+++++++.+..|. +...|+..-..+. ..|++++|+.+++...+.. +.+...|..+..++...
T Consensus 44 ~~~~al~~~~~~l~~~P~--~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 44 LDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 347899999999887765 5555654333322 2344778888888887764 33566777777777766
Q ss_pred CC--cchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 047518 85 GR--VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYN-TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161 (256)
Q Consensus 85 ~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (256)
++ +++|...+.++.+.. +++...+. .....+...+.+++|+..++......+. +...|..+
T Consensus 121 ~~~~~~~a~~~~~~al~~~---------------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l 184 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD---------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYR 184 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhC---------------chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 54 678888888887741 23444443 3446777789999999999988887654 77788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 047518 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241 (256)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (256)
...+...|++++|...++...+. .|+. ..+...+...+..+++...+....... +++...+..+...+...|+.
T Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~ 258 (334)
T d1dcea1 185 SCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSE 258 (334)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhH
Confidence 88888888888776665554433 1211 223344566677788888888877653 44555666677777788888
Q ss_pred hHHHHHHHHHHhc
Q 047518 242 NHAKELFVSMESM 254 (256)
Q Consensus 242 ~~a~~~~~~m~~~ 254 (256)
++|...+.+..+.
T Consensus 259 ~~a~~~~~~~~~~ 271 (334)
T d1dcea1 259 LESCKELQELEPE 271 (334)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhh
Confidence 8888888776543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=8.8e-08 Score=65.34 Aligned_cols=99 Identities=14% Similarity=0.012 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 047518 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197 (256)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 197 (256)
|+...+......|.+.|++++|+..|.+.....+. +...|..+..+|.+.|++++|+..++..++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 67777888899999999999999999998887543 78889999999999999999999999998763 23577899999
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 047518 198 DELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~ 218 (256)
.+|...|++++|...|+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.75 E-value=1.5e-08 Score=62.51 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=79.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (256)
|..+.+.|++++|+..|++.....|. +..+|..+..++.+.|++++|+..|++..+.. +.+...|..+..+|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc--cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 44567899999999999999998876 78899999999999999999999999998874 4467899999999999999
Q ss_pred cchHHHHHHHHH
Q 047518 87 VSHGFVVLGRIL 98 (256)
Q Consensus 87 ~~~a~~~~~~~~ 98 (256)
+++|++.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.68 E-value=2.4e-07 Score=56.84 Aligned_cols=86 Identities=13% Similarity=-0.024 Sum_probs=43.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 047518 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243 (256)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (256)
.+.+.|++++|...+++.+... +-+...|..+..++.+.|++++|+..|++..+.. +.+...+..+..+|...|++++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence 3444555555555555555442 1134455555555555555555555555555432 2344455555555555555555
Q ss_pred HHHHHHHH
Q 047518 244 AKELFVSM 251 (256)
Q Consensus 244 a~~~~~~m 251 (256)
|.+.+++.
T Consensus 103 A~~~l~~~ 110 (112)
T d1hxia_ 103 ALASLRAW 110 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.66 E-value=1.8e-05 Score=56.06 Aligned_cols=216 Identities=13% Similarity=-0.024 Sum_probs=148.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (256)
|..+...+++++|++.|++..+.+ +..++..|...|.. ..+...|...++.....+ +......+...+.
T Consensus 9 G~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~ 81 (265)
T d1ouva_ 9 GAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYY 81 (265)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccccc
Confidence 344556789999999999987754 44566667777765 567888888888887765 3344444544444
Q ss_pred h----cCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCc
Q 047518 83 K----MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK----QGFVDKAKELFLKMKDKNVKPN 154 (256)
Q Consensus 83 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 154 (256)
. ..+.+.|...++...+.| .......+...+.. ......+...+......+ +
T Consensus 82 ~~~~~~~~~~~a~~~~~~a~~~g-----------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~ 141 (265)
T d1ouva_ 82 SGQGVSQNTNKALQYYSKACDLK-----------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D 141 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred cccccchhhHHHHHHHhhhhhhh-----------------hhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---c
Confidence 3 345567777787777653 22333344444432 455677777777766653 5
Q ss_pred hHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHH
Q 047518 155 VVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 155 ~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
...+..+...+.. ..+...+...++...+.| +......+...+.. ..++++|...|....+.| ++.
T Consensus 142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~ 215 (265)
T d1ouva_ 142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 215 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred cchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHH
Confidence 5666667776654 456778888888888765 45555566666655 568999999999999886 566
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 047518 227 TYNTLLDGFCL----TGRVNHAKELFVSMESMG 255 (256)
Q Consensus 227 ~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 255 (256)
.+..|...|.+ ..+.++|.++|++..+.|
T Consensus 216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 67777777765 448999999999987766
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.5e-06 Score=55.66 Aligned_cols=117 Identities=9% Similarity=-0.073 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CC---------chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNV-----KP---------NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.+......+.+.|++++|+..|.+...... .. -..+|+.+..+|.+.|++++|+..++..+... +
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p 93 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 93 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-c
Confidence 344556789999999999999998765311 10 12456778888999999999999999999875 3
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (256)
.+..++..+..++...|++++|...|+...+.. +-+......+..+..+.+.
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999998853 2356666555555444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2e-07 Score=58.04 Aligned_cols=100 Identities=11% Similarity=0.049 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCc-HHHHHHHHHH
Q 047518 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND---WNEAKRLFIEMMDQGVQPN-VVTFNVIMDE 199 (256)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~ 199 (256)
..+++.+...+++++|.+.|+.....++. +..++..+..++.+.++ .++|+.+++++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 46788889999999999999999887654 77888888888876554 5569999999887654444 2477888999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047518 200 LCKNGKMDEASSLLDLMIQHGVRPDAF 226 (256)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (256)
|.+.|++++|.+.|+++.+. .|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 99999999999999999985 45533
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=6.3e-07 Score=55.72 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=74.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHhHHHHHHH
Q 047518 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK---MDEASSLLDLMIQHGVRPD-AFTYNTLLDG 234 (256)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 234 (256)
..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++ +++|+.+|+++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777888899999999999999875 4577888888888877554 4568999998887543333 2367788899
Q ss_pred HHhcCChhHHHHHHHHHHhc
Q 047518 235 FCLTGRVNHAKELFVSMESM 254 (256)
Q Consensus 235 ~~~~g~~~~a~~~~~~m~~~ 254 (256)
|.+.|++++|++.|++..+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999988764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.1e-06 Score=56.75 Aligned_cols=78 Identities=13% Similarity=-0.052 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 200 (256)
.+|+.+..+|.+.|++++|+..++......+. +..+|..+..+|...|++++|...|+...+..+ -+......+..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 35777889999999999999999999987543 788899999999999999999999999998742 2444444444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.6e-06 Score=53.40 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-Cc-----HHHHHHH
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PN-----VVTFNVI 196 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l 196 (256)
+..+...|.+.|++++|+..|.+..+.++. +..++..+..+|.+.|++++|...++++++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 456778899999999999999999987654 7889999999999999999999999998864211 11 2467778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 047518 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230 (256)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (256)
...+...+++++|...|+..... .++......
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 117 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKK 117 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 88889999999999999988764 345544433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=6e-05 Score=53.25 Aligned_cols=179 Identities=7% Similarity=-0.030 Sum_probs=116.5
Q ss_pred cCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----c
Q 047518 13 TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----M 84 (256)
Q Consensus 13 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 84 (256)
..++..|...+......+ +......+...+.. ..+.+.|...++...+.|.. .....+...+.. .
T Consensus 51 ~~d~~~a~~~~~~a~~~~----~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 51 EKNLKKAASFYAKACDLN----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVT 123 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSC
T ss_pred chhHHHHHHhhccccccc----ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCccc
Confidence 457777888887776644 23344455444443 45678889999888877632 222333333332 2
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 047518 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK----QGFVDKAKELFLKMKDKNVKPNVVTYTS 160 (256)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (256)
.....+...+...... .+...+..|...|.. ..+...+...+....+.| +..+...
T Consensus 124 ~~~~~a~~~~~~~~~~-----------------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~ 183 (265)
T d1ouva_ 124 RDFKKAVEYFTKACDL-----------------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFN 183 (265)
T ss_dssp CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred chhHHHHHHhhhhhcc-----------------cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccc
Confidence 2334455555554442 456667777777775 567788888888887765 4445555
Q ss_pred HHHHHhc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 047518 161 VIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASSLLDLMIQHGV 221 (256)
Q Consensus 161 li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~ 221 (256)
+-..|.. ..+.++|...|+...+.| +...+..|...|.+ ..+.++|.+.|++..+.|.
T Consensus 184 lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 184 AGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 5555543 578999999999999886 34566667777764 3478999999999988774
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1e-07 Score=60.18 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=78.0
Q ss_pred cCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCC-CC-----HhhHHHHH
Q 047518 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PD-----LYTHSILI 78 (256)
Q Consensus 5 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l~ 78 (256)
..|..+...|++++|+..|++.++.+|. +..+|..+..+|.+.|+++.|+..++++++.... +. ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3566788899999999999999998875 7889999999999999999999999998764211 11 23677788
Q ss_pred HHHHhcCCcchHHHHHHHHHhc
Q 047518 79 NCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
..+...+++++|+..|.+....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 8888899999999999888764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.42 E-value=9.1e-06 Score=53.48 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhc---CCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 73 THSILINCFCKMGRVSHGFVVLGRILRS---CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 73 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
.+......+.+.|++++|+..|.+.+.. ....+....... .......|+.+..+|.+.|++++|+..++.....
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~---~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS---ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhc---chhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 3444555666677777777777665542 000000000000 0001223445556666666666666666666655
Q ss_pred CCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
.+ .+..+|..+..++...|++++|...++++...
T Consensus 94 ~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 94 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred cc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 25556666666666666666666666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.41 E-value=4.6e-06 Score=55.49 Aligned_cols=70 Identities=9% Similarity=0.096 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCcHHH
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-----QGVQPNVVT 192 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 192 (256)
.+..+..++.+.|++++|+..++.+...... +...|..++.++...|+..+|++.|+++.+ .|+.|+..+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 4555666777777777777777777665432 666677777777777777777777766542 466666544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.40 E-value=9.8e-06 Score=53.32 Aligned_cols=129 Identities=7% Similarity=-0.024 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC-----------chHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 122 TYNTIIDGLCKQGFVDKAKELFLKMKDK---NVKP-----------NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
.+.-....+.+.|++++|...|...... ...+ ....|+.+..+|.+.|++++|+..++..++.. +
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p 95 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 95 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-c
Confidence 3445677899999999999999886532 1111 12346667788899999999999999999875 4
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh-HHHHHHHHHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN-HAKELFVSME 252 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~m~ 252 (256)
.+...|.....++...|++++|...|..+.+.. +.+......+-.+..+.+... ...+++.+|-
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 578899999999999999999999999999863 445555555555544444333 3344444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.38 E-value=1.5e-05 Score=51.50 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCc-----------hHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNV----KPN-----------VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
+..-...+.+.|++.+|+..|......-. .++ ..+|..+..+|.+.|++++|+..++..++.. +
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p 98 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 98 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-c
Confidence 44456788899999999999998775311 111 2456778888899999999999999998875 4
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (256)
.+..+|..+..++...|++++|...|+...+.. +-+..+...+
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l 141 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 141 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 477899999999999999999999999988753 2244444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=8.4e-07 Score=69.23 Aligned_cols=114 Identities=10% Similarity=-0.111 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
+...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...+++..+.. +-+...|+.+..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 34445555566666666666666655544321 22445556666666777777777777776653 234566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
.+...|+..+|...|.+..... +|...++..|...+.+
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 7777777777777776666542 4455555555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.34 E-value=1.1e-05 Score=53.06 Aligned_cols=113 Identities=13% Similarity=0.027 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 047518 123 YNTIIDGLCKQGFVDKAKELFLKMKDK--------------NV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187 (256)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (256)
+......+.+.|++++|+..|.+..+. .. +.....|..+..++.+.|++++|+..++..++.. +
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p 108 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 108 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence 344566788999999999999876431 01 1234456777888899999999999999999875 4
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 047518 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237 (256)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (256)
.+...|..+..++...|++++|...|+...+.. +.+......+..+..+
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQK 157 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 477889999999999999999999999998863 3455566665555433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.32 E-value=5.1e-06 Score=54.77 Aligned_cols=80 Identities=9% Similarity=-0.031 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
....|..+..+|.+.|++++|+..+....+.... +..+|..+..++...|++++|...|+...+.. +.+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4456778889999999999999999999987643 77889999999999999999999999999874 234555555444
Q ss_pred HH
Q 047518 199 EL 200 (256)
Q Consensus 199 ~~ 200 (256)
+.
T Consensus 154 ~~ 155 (169)
T d1ihga1 154 VK 155 (169)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.31 E-value=1.7e-05 Score=51.28 Aligned_cols=64 Identities=16% Similarity=-0.030 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 047518 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185 (256)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (256)
.+|+.+..+|.+.|++++|+..+.......+ .+..+|..+..++...|++++|...|+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4677889999999999999999999988754 378899999999999999999999999999874
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.29 E-value=2.8e-05 Score=51.61 Aligned_cols=104 Identities=8% Similarity=-0.016 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCC-Cc------------------hHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 047518 125 TIIDGLCKQGFVDKAKELFLKMKDK--NVK-PN------------------VVTYTSVIRGFCYANDWNEAKRLFIEMMD 183 (256)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~~------------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 183 (256)
.........|++++|...|...... |.. ++ ...+..+..++...|++++|+..++.+..
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 95 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 95 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3446778899999999999998764 211 11 13467778888999999999999999998
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHhHH
Q 047518 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-----HGVRPDAFTYN 229 (256)
Q Consensus 184 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 229 (256)
.. +-+...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-.
T Consensus 96 ~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 96 EH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred hC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 75 45788999999999999999999999998753 68899876533
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.24 E-value=2.7e-06 Score=54.63 Aligned_cols=78 Identities=6% Similarity=-0.059 Sum_probs=61.2
Q ss_pred CCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc----------CChHHHHHHHHHHhhCCCCCCHhhHH
Q 047518 6 SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN----------KHYDTVLSLFKRLNSTGLFPDLYTHS 75 (256)
Q Consensus 6 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~ 75 (256)
.+..+-+.+.+++|++.|+...+..|. ++.++..+..++... +.+++|+..|++..+.. +.+..+|.
T Consensus 3 ~~~~~~r~~~fe~A~~~~e~al~~~P~--~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~ 79 (145)
T d1zu2a1 3 TETEFDRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVW 79 (145)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhHHHHHHccHHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHh
Confidence 455667788899999999999998876 888888888888754 44578999999988764 34667888
Q ss_pred HHHHHHHhcCC
Q 047518 76 ILINCFCKMGR 86 (256)
Q Consensus 76 ~l~~~~~~~~~ 86 (256)
.+..+|...|+
T Consensus 80 ~lG~~y~~~g~ 90 (145)
T d1zu2a1 80 CIGNAYTSFAF 90 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHccc
Confidence 88888876553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.4e-05 Score=62.25 Aligned_cols=114 Identities=11% Similarity=-0.113 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047518 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151 (256)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (256)
..+..+...+.+.|+.+.|...+....+. .....+..+...+...|++++|...|.+..+..+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------------~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P 183 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY-----------------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP 183 (497)
T ss_dssp ----------------------CCHHHHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 34444555555555555555554444331 0124567788999999999999999999988754
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 047518 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204 (256)
Q Consensus 152 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 204 (256)
. +..+|+.+...+...|+..+|...|.+..... .|...++..|...+.+..
T Consensus 184 ~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 184 S-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp T-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred C-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 3 77899999999999999999999999999875 567788888888776544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.09 E-value=4e-06 Score=59.46 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=81.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChhH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDE 208 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~ 208 (256)
..+.|++++|+..+++..+..+. +...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 35679999999999999988654 8889999999999999999999999999987 344 3444444444333332222
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047518 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253 (256)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 253 (256)
+..-.......+-+++...+......+...|+.++|.+++++..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 211111100111122233444556677888999999999988765
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.08 E-value=2.1e-05 Score=50.32 Aligned_cols=117 Identities=14% Similarity=0.035 Sum_probs=86.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA----------NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 199 (256)
|-+.+.+++|...|+...+..+. +..++..+-.++... +.+++|+..+++.++.. +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 45667799999999999887643 677777777777643 45678999999999875 3467788888888
Q ss_pred HHhcCC-----------hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 200 LCKNGK-----------MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 200 ~~~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
|...|+ +++|.+.|+...+. .|+...|..-+..+ .+|.+++.+..+.|+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 876553 68899999988874 56666665555443 467778888777774
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.04 E-value=9.1e-06 Score=57.58 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=44.6
Q ss_pred CCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhC
Q 047518 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65 (256)
Q Consensus 9 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 65 (256)
..++.|++++|+..+++..+..|. +...+..+...++..|++++|...++...+.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~--d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 346778888888888888887765 7778888888888888888888888888775
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.94 E-value=1.2e-05 Score=52.21 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=73.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHhCCCCCC----------cccHHHHHHHHHccCChHHHHHHHHHHhhC-----CCCCC-
Q 047518 7 GEGDITTITPNEALCIFDYMLRMHPSPPP----------VSSFNIMLGCLAKNKHYDTVLSLFKRLNST-----GLFPD- 70 (256)
Q Consensus 7 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~- 70 (256)
|..+.+.|++++|+..|++.++..+..|+ ..+|+.+..+|...|+++.|...+++..+. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44566789999999999999887655343 246888999999999999999999987642 11121
Q ss_pred ----HhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047518 71 ----LYTHSILINCFCKMGRVSHGFVVLGRILR 99 (256)
Q Consensus 71 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 99 (256)
...|..+..+|...|++++|+..|++.++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23577788999999999999999999876
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.0026 Score=46.20 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=44.1
Q ss_pred ccCCCCCCCcCChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHh-------------h------
Q 047518 4 KSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLN-------------S------ 64 (256)
Q Consensus 4 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------------~------ 64 (256)
...|..+.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp -----------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHH
Confidence 456777889999999999998651 26667777777777777666554321 0
Q ss_pred -----CCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047518 65 -----TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98 (256)
Q Consensus 65 -----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 98 (256)
.....+......++..|-..|.+++...+++...
T Consensus 88 a~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~ 126 (336)
T d1b89a_ 88 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL 126 (336)
T ss_dssp HHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1112233344455566666666666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.80 E-value=0.00046 Score=44.33 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=72.3
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCC-C----------chHHHHHHHHHHhccCCHHHHHHHHHHHHHc---
Q 047518 121 ITYNTI--IDGLCKQGFVDKAKELFLKMKDKNVK-P----------NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--- 184 (256)
Q Consensus 121 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~-~----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 184 (256)
.+|..+ ...+...|++++|+..|.+..+.... | ....|+.+..+|...|++++|...+++..+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345555 55677889999999999988753211 1 1357888899999999999999999887742
Q ss_pred --CCCCc-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047518 185 --GVQPN-----VVTFNVIMDELCKNGKMDEASSLLDLMIQ 218 (256)
Q Consensus 185 --~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (256)
...++ ...+..+..+|...|++++|...|++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121 23567778899999999999999988764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.0065 Score=44.05 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=76.8
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhh
Q 047518 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 113 (256)
||..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|..+..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~---------------- 66 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA---------------- 66 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH----------------
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc----------------
Confidence 5555566788888899999999999986542 556777888888888887776543
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 047518 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193 (256)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (256)
.+..+|..+..++........|. +.......+......++..|...|.+++...+++...... .++...+
T Consensus 67 ----~~~~~~k~~~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~ 136 (336)
T d1b89a_ 67 ----NSTRTWKEVCFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 136 (336)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHH
T ss_pred ----CCHHHHHHHHHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHH
Confidence 23445666666666665554431 1222233345555667777777777777777777765432 4456667
Q ss_pred HHHHHHHHhcC
Q 047518 194 NVIMDELCKNG 204 (256)
Q Consensus 194 ~~ll~~~~~~g 204 (256)
+.++..|++.+
T Consensus 137 ~~L~~lyak~~ 147 (336)
T d1b89a_ 137 TELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 77777777653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00081 Score=39.09 Aligned_cols=82 Identities=13% Similarity=0.018 Sum_probs=57.2
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047518 70 DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149 (256)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (256)
+...+-.+...+.+.|++++|+.+|++.++..-.... .......+++.+..+|.+.|++++|+..+++..+.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~--------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI--------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc--------cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4445567888999999999999999998764110000 00112457888999999999999999999998887
Q ss_pred CCCCchHHHHH
Q 047518 150 NVKPNVVTYTS 160 (256)
Q Consensus 150 ~~~~~~~~~~~ 160 (256)
.+. +..+++.
T Consensus 76 ~P~-~~~a~~N 85 (95)
T d1tjca_ 76 DPE-HQRANGN 85 (95)
T ss_dssp CTT-CHHHHHH
T ss_pred CcC-CHHHHHH
Confidence 533 3444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.002 Score=37.34 Aligned_cols=65 Identities=8% Similarity=-0.076 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047518 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKN-----VKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184 (256)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 184 (256)
...+..+...+.+.|++++|...|++..+.. ..+ ...++..+..++.+.|++++|...++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445566777778888888888777665421 111 2345666777777777777777777777765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.33 E-value=0.0056 Score=37.82 Aligned_cols=111 Identities=11% Similarity=-0.017 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChhHH
Q 047518 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEA 209 (256)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a 209 (256)
.++++|...|.+..+.|.. .....+. .....+.++|..++++..+.| +......+...|.. ..+.++|
T Consensus 7 kd~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 3678999999998887743 2223332 345678899999999998876 34455556666654 4578999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 047518 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMESMG 255 (256)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 255 (256)
.++|+...+.| ++.....|...|.. ..+.++|.+++++..+.|
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 99999999876 45556666666665 468999999999988776
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.91 E-value=0.015 Score=35.07 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=89.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHc-C----------------CCCcHHH
Q 047518 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-G----------------VQPNVVT 192 (256)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~----------------~~~~~~~ 192 (256)
+...|..++..++..+..... +..-||.+|.-....-+-+...++++.+-+. . ...+...
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~ 88 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 88 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence 456788888888888876642 4445566665544445555555555554321 0 1124456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047518 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256 (256)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 256 (256)
++..++.+..+|+-++-.++++.+.+.+ +|++...-.+..+|.+.|...++-+++++.-++|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 6778899999999999999999987754 78889999999999999999999999999998885
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.90 E-value=0.017 Score=35.54 Aligned_cols=78 Identities=3% Similarity=-0.039 Sum_probs=41.6
Q ss_pred CChhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCcch
Q 047518 14 ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK----MGRVSH 89 (256)
Q Consensus 14 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 89 (256)
.++++|+..|++..+.+.. ..+..+.. ....+.++|.+++++..+.| +......|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM----FGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT----THHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCCh----hhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHH
Confidence 3667777777777665432 22333332 23445667777776666655 33344444444433 234455
Q ss_pred HHHHHHHHHhc
Q 047518 90 GFVVLGRILRS 100 (256)
Q Consensus 90 a~~~~~~~~~~ 100 (256)
|.++|++..+.
T Consensus 78 A~~~~~~aa~~ 88 (133)
T d1klxa_ 78 AAQYYSKACGL 88 (133)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHhhhhcc
Confidence 66666665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.77 E-value=0.02 Score=34.51 Aligned_cols=139 Identities=13% Similarity=0.068 Sum_probs=89.1
Q ss_pred ccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCchhhHHhhhhhcCCCHHHHHHHH
Q 047518 48 KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127 (256)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~l~ 127 (256)
-.|..++..+++.+..... +..-|+.++.-....-+-+...++++..-+. -|
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD---------------------- 65 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD---------------------- 65 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------------------
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cC----------------------
Confidence 4566677777776665542 3444555554444444444444444444331 11
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChh
Q 047518 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207 (256)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 207 (256)
...++++......+-.+-. +...+...++.....|.-++-.++++++.+.+ .|++.....+..+|.+.|...
T Consensus 66 --ls~C~Nlk~vv~C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~r 137 (161)
T d1wy6a1 66 --LDKCQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDER 137 (161)
T ss_dssp --GGGCSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHH
T ss_pred --chhhhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchh
Confidence 1244555555555544422 44456777788888899999999988877754 778888888899999999999
Q ss_pred HHHHHHHHHHHCCCC
Q 047518 208 EASSLLDLMIQHGVR 222 (256)
Q Consensus 208 ~a~~~~~~~~~~~~~ 222 (256)
++.+++.+..+.|++
T Consensus 138 e~nell~~ACe~G~K 152 (161)
T d1wy6a1 138 DATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHhHH
Confidence 999999998888764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.05 E-value=0.048 Score=31.01 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047518 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233 (256)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 233 (256)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+....+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 44555555666666666666666666666666666666666666666533 1223334444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.074 Score=31.97 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=51.1
Q ss_pred CCcccHHHHHHHHHccCC---hHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047518 34 PPVSSFNIMLGCLAKNKH---YDTVLSLFKRLNSTGLFPD-LYTHSILINCFCKMGRVSHGFVVLGRILRS 100 (256)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 100 (256)
+++.+--....++.+..+ .++++.+++...+.+ +.+ ...+..+.-+|.+.|++++|.++++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 566676667777776654 568999999988753 223 356677888999999999999999999985
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.15 Score=30.59 Aligned_cols=70 Identities=11% Similarity=0.186 Sum_probs=45.9
Q ss_pred CchHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047518 153 PNVVTYTSVIRGFCYA---NDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225 (256)
Q Consensus 153 ~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 225 (256)
|+..|--...-++.+. .+.++++.+++++.+.+ +.+ ...+..+.-+|.+.|++++|.+.++.+.+. .|+-
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCc
Confidence 4444433344444433 45678888888888753 223 346667777888899999999999888875 4543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.67 E-value=0.17 Score=28.75 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=53.6
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 047518 129 GLCKQG-FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198 (256)
Q Consensus 129 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 198 (256)
.+.+.. +.=++.+-++.+......|++....+.+++|.+.+++..|.++++-.+.. +.++...|..++.
T Consensus 14 ~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 14 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 333443 55677888888888888999999999999999999999999999998855 3345556766654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.89 E-value=2.8 Score=31.08 Aligned_cols=215 Identities=9% Similarity=-0.008 Sum_probs=116.7
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCcchHH--HHHHHHHhcC-----------
Q 047518 35 PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF--VVLGRILRSC----------- 101 (256)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~~~~~~~~~----------- 101 (256)
+...-.....+....|+...|...+..+...|. ..+..+..+...+...|.+.... +-+..+...|
T Consensus 101 ~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~ 179 (450)
T d1qsaa1 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (450)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh
Confidence 333334566667777888888887777766652 23334444555444444433221 1111111111
Q ss_pred CCCch--------------hhHHhhhhhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCchHH---HHHHH
Q 047518 102 FTPDV--------------VTFTSLIKVCKPDAITYNTIIDGLCK--QGFVDKAKELFLKMKDKNVKPNVVT---YTSVI 162 (256)
Q Consensus 102 ~~~~~--------------~~~~~ll~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li 162 (256)
+.++. ............+......+..++.+ ..+.+.|...+.............. ...+.
T Consensus 180 l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a 259 (450)
T d1qsaa1 180 MPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVA 259 (450)
T ss_dssp CCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHH
Confidence 11111 00111111233344443444444333 3577888888887765432222211 11122
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 047518 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242 (256)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 242 (256)
......+..+.+...+......+ .+.......+......+++..+...+..|... ......-...+..++...|+.+
T Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~ 336 (450)
T d1qsaa1 260 WRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREA 336 (450)
T ss_dssp HTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChh
Confidence 22334566777877777776654 34444444555667788999999998877542 2234555677889999999999
Q ss_pred HHHHHHHHHHh
Q 047518 243 HAKELFVSMES 253 (256)
Q Consensus 243 ~a~~~~~~m~~ 253 (256)
+|..+|.....
T Consensus 337 ~A~~~~~~~a~ 347 (450)
T d1qsaa1 337 EAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHHhc
Confidence 99999987653
|