Citrus Sinensis ID: 047530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
INASSSQSSPSFAAPQSPPPPVVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHcHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHHHc
Coil and Loop (DISEMBL)
inasssqsspsfaapqsppppvvlspcaacKILRRRCVEkcvlapyfpptepqkfVIAHRVFGASNIIKFLQ
Flexible Loop (DISEMBL)
inasssqsspsfaapqsppppvVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ
Low Complexity Region (SEG)
INasssqsspsfaapqsppppvvlspcaacKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ
Disordered region (IsUnstruct)
*********************VVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKF**
Disordered Region (DISOPRED)
****************************ACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ
Disordered Region (DISEMBL)
********************PVVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ
Disordered Region (DISPRO)
***********************LSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
INASSSQSSPSFAAPQSPPPPVVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q9SK08	232	LOB domain-containing pro	yes	no	0.708	0.219	0.901	2e-22
Q9LQR0	190	LOB domain-containing pro	no	no	0.708	0.268	0.901	3e-22
O64836	311	LOB domain-containing pro	no	no	0.652	0.151	0.702	2e-15
Q8LBW3	193	LOB domain-containing pro	no	no	0.666	0.248	0.666	3e-15
Q9SHE9	172	LOB domain-containing pro	no	no	0.666	0.279	0.708	3e-15
Q9FKZ3	313	LOB domain-containing pro	no	no	0.652	0.150	0.680	5e-15
Q32SG3	260	LOB domain-containing pro	N/A	no	0.666	0.184	0.708	1e-14
Q8LQH4	269	LOB domain-containing pro	no	no	0.666	0.178	0.708	1e-14
A2WXT0	269	LOB domain-containing pro	N/A	no	0.666	0.178	0.708	1e-14
A1YKY7	269	Protein IAL1 OS=Zea mays	N/A	no	0.666	0.178	0.687	2e-14

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 48/51 (94%)

Query: 22  VVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
           VVLSPCAACKILRRRC +KCVLAPYFPPT+P KF IAHRVFGASNIIKFLQ
Sbjct: 51  VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 101

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 48/51 (94%)

Query: 22 VVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          VVLSPCAACKILRRRC E+CVLAPYFPPT+P KF IAHRVFGASNIIKFLQ
Sbjct: 29 VVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 40/47 (85%)

Query: 25 SPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFL 71
          +PCAACK+LRR+C ++CV APYFPPT PQKF+  HRVFGASN+ K L
Sbjct: 4  TPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKIL 50

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 39/48 (81%)

Query: 25 SPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          SPCA+CK+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQ
Sbjct: 7  SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQ 54

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 38/48 (79%)

Query: 25 SPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          SPCAACK+LRRRC + CV +PYFP  EPQKF   HRVFGASN+ K LQ
Sbjct: 12 SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 59

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 38/47 (80%)

Query: 25 SPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFL 71
          SPCAACK LRR+C ++CV APYFPP +PQKF   H+VFGASN+ K L
Sbjct: 6  SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLL 52

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 36/48 (75%)

Query: 25 SPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          SPCAACK LRR+C   CV APYFPP  PQKFV  HRVFGASN+ K L 
Sbjct: 32 SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLN 79

Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes.

Zea mays (taxid: 4577)

>sp|Q8LQH4|LBD6_ORYSJ LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 36/48 (75%)

Query: 25 SPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          SPCAACK LRR+C   CV APYFPP  PQKFV  HRVFGASN+ K L 
Sbjct: 37 SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLN 84

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WXT0|LBD6_ORYSI LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 36/48 (75%)

Query: 25 SPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          SPCAACK LRR+C   CV APYFPP  PQKFV  HRVFGASN+ K L 
Sbjct: 37 SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLN 84

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A1YKY7|IAL1_MAIZE Protein IAL1 OS=Zea mays PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 36/48 (75%)

Query: 25 SPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          SPCAACK LRR+C   CV APYFPP  PQKFV  HRVFGASN+ K + 
Sbjct: 32 SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMN 79

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
224100841	178	predicted protein [Populus trichocarpa]	0.944	0.382	0.746	5e-23
359486539	260	PREDICTED: LOB domain-containing protein	0.902	0.25	0.8	4e-22
147819143	197	hypothetical protein VITISV_021299 [Viti	0.902	0.329	0.8	5e-22
296086071	197	unnamed protein product [Vitis vinifera]	0.902	0.329	0.8	5e-22
356557485	210	PREDICTED: LOB domain-containing protein	0.958	0.328	0.718	4e-21
357453757	198	LOB domain protein [Medicago truncatula]	0.736	0.267	0.886	5e-21
79565313	232	LOB domain-containing protein 11 [Arabid	0.708	0.219	0.901	9e-21
4510398	229	hypothetical protein [Arabidopsis thalia	0.708	0.222	0.901	9e-21
255642173	202	unknown [Glycine max]	0.708	0.252	0.921	1e-20
449451890	203	PREDICTED: LOB domain-containing protein	0.708	0.251	0.941	1e-20

>gi|224100841|ref|XP_002312035.1| predicted protein [Populus trichocarpa] gi|222851855|gb|EEE89402.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 60/71 (84%), Gaps = 3/71 (4%)

Query: 5  SSQSSPSFAAPQS---PPPPVVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRV 61
          S  +SP   +P +   PPPPVV++PCAACKILRRRCV+KCVLAPYFPP+EP KF IAHRV
Sbjct: 1  SKSNSPGLTSPSAATLPPPPVVITPCAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHRV 60

Query: 62 FGASNIIKFLQ 72
          FGASNIIKFLQ
Sbjct: 61 FGASNIIKFLQ 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486539|ref|XP_002275402.2| PREDICTED: LOB domain-containing protein 1-like [Vitis vinifera]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 55/65 (84%)

Query: 8   SSPSFAAPQSPPPPVVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNI 67
           SS +   P+SPP  VVLSPCAACKILRRRC +KCVLAPYFPPTEP KF IAHRVFGASNI
Sbjct: 87  SSSNSGLPRSPPALVVLSPCAACKILRRRCADKCVLAPYFPPTEPLKFTIAHRVFGASNI 146

Query: 68  IKFLQ 72
           IK LQ
Sbjct: 147 IKLLQ 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819143|emb|CAN78080.1| hypothetical protein VITISV_021299 [Vitis vinifera]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 55/65 (84%)

Query: 8  SSPSFAAPQSPPPPVVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNI 67
          SS +   P+SPP  VVLSPCAACKILRRRC +KCVLAPYFPPTEP KF IAHRVFGASNI
Sbjct: 24 SSSNSGLPRSPPALVVLSPCAACKILRRRCADKCVLAPYFPPTEPLKFTIAHRVFGASNI 83

Query: 68 IKFLQ 72
          IK LQ
Sbjct: 84 IKLLQ 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086071|emb|CBI31512.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 55/65 (84%)

Query: 8  SSPSFAAPQSPPPPVVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNI 67
          SS +   P+SPP  VVLSPCAACKILRRRC +KCVLAPYFPPTEP KF IAHRVFGASNI
Sbjct: 24 SSSNSGLPRSPPALVVLSPCAACKILRRRCADKCVLAPYFPPTEPLKFTIAHRVFGASNI 83

Query: 68 IKFLQ 72
          IK LQ
Sbjct: 84 IKLLQ 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557485|ref|XP_003547046.1| PREDICTED: LOB domain-containing protein 11-like [Glycine max]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 2  NASSSQSSPSFAAPQSPPPPVVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRV 61
          N + S SS + ++P  P   VV+SPCAACKILRRRC EKCVLAPYFP TEP KF  AHRV
Sbjct: 19 NTTFSHSSNTLSSP--PQVQVVMSPCAACKILRRRCAEKCVLAPYFPLTEPSKFTTAHRV 76

Query: 62 FGASNIIKFLQ 72
          FGASNIIKFLQ
Sbjct: 77 FGASNIIKFLQ 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453757|ref|XP_003597159.1| LOB domain protein [Medicago truncatula] gi|355486207|gb|AES67410.1| LOB domain protein [Medicago truncatula]

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 48/53 (90%)

Query: 20 PPVVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          P VV+SPCAACKILRRRC EKCVLAPYFPPTEP KF  AHRVFGASNIIKFLQ
Sbjct: 27 PQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPSKFTTAHRVFGASNIIKFLQ 79

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79565313|ref|NP_180417.2| LOB domain-containing protein 11 [Arabidopsis thaliana] gi|334302828|sp|Q9SK08.2|LBD11_ARATH RecName: Full=LOB domain-containing protein 11; AltName: Full=ASYMMETRIC LEAVES 2-like protein 7; Short=AS2-like protein 7 gi|330253037|gb|AEC08131.1| LOB domain-containing protein 11 [Arabidopsis thaliana]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 48/51 (94%)

Query: 22  VVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
           VVLSPCAACKILRRRC +KCVLAPYFPPT+P KF IAHRVFGASNIIKFLQ
Sbjct: 51  VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 101

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4510398|gb|AAD21485.1| hypothetical protein [Arabidopsis thaliana] gi|219807090|dbj|BAH10551.1| ASYMMETRIC LEAVES2-like 7 protein [Arabidopsis thaliana]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 48/51 (94%)

Query: 22 VVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          VVLSPCAACKILRRRC +KCVLAPYFPPT+P KF IAHRVFGASNIIKFLQ
Sbjct: 48 VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 98

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642173|gb|ACU21351.1| unknown [Glycine max]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/51 (92%), Positives = 48/51 (94%)

Query: 22 VVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          VV+SPCAACKILRRRC EKCVLAPYFPPTEP KF IAHRVFGASNIIKFLQ
Sbjct: 31 VVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQ 81

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451890|ref|XP_004143693.1| PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus] gi|449530814|ref|XP_004172387.1| PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 49/51 (96%)

Query: 22 VVLSPCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          VVLSPCAACKILRRRCVEKCVLAPYFPPT+P KF IAHRVFGASNIIKFLQ
Sbjct: 48 VVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQ 98

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.583	0.221	0.880	2.9e-16
TAIR|locus:2056578	232	LBD11 "LOB domain-containing p	0.583	0.181	0.880	2.9e-16
TAIR|locus:2046817	311	LBD10 "LOB domain-containing p	0.569	0.131	0.682	1.3e-12
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.583	0.217	0.642	3.9e-12
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.583	0.244	0.666	1.7e-11
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.569	0.130	0.634	3e-11
UNIPROTKB|Q32SG3	260	LBD6 "LOB domain-containing pr	0.569	0.157	0.682	5.4e-11
TAIR|locus:2090852	121	LBD23 "LOB domain-containing p	0.583	0.347	0.595	5.8e-11
TAIR|locus:2090812	121	LBD24 "LOB domain-containing p	0.583	0.347	0.595	5.8e-11
TAIR|locus:2034163	199	AS2 "ASYMMETRIC LEAVES 2" [Ara	0.569	0.206	0.634	7.4e-11

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 37/42 (88%), Positives = 39/42 (92%)

Query:    31 KILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
             KILRRRC E+CVLAPYFPPT+P KF IAHRVFGASNIIKFLQ
Sbjct:    38 KILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2056578 LBD11 "LOB domain-containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 37/42 (88%), Positives = 39/42 (92%)

Query:    31 KILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
             KILRRRC +KCVLAPYFPPT+P KF IAHRVFGASNIIKFLQ
Sbjct:    60 KILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 101

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046817 LBD10 "LOB domain-containing protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query:    31 KILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFL 71
             K+LRR+C ++CV APYFPPT PQKF+  HRVFGASN+ K L
Sbjct:    10 KLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKIL 50

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query:    31 KILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
             K+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQ
Sbjct:    13 KLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQ 54

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 28/42 (66%), Positives = 32/42 (76%)

Query:    31 KILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
             K+LRRRC + CV +PYFP  EPQKF   HRVFGASN+ K LQ
Sbjct:    18 KLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 59

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query:    31 KILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFL 71
             K LRR+C ++CV APYFPP +PQKF   H+VFGASN+ K L
Sbjct:    12 KFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLL 52

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

UNIPROTKB|Q32SG3 LBD6 "LOB domain-containing protein 6" [Zea mays (taxid:4577)]

 Score = 154 (59.3 bits), Expect = 5.4e-11, P = 5.4e-11
 Identities = 28/41 (68%), Positives = 30/41 (73%)

Query:    31 KILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFL 71
             K LRR+C   CV APYFPP  PQKFV  HRVFGASN+ K L
Sbjct:    38 KFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLL 78

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2090852 LBD23 "LOB domain-containing protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query:    31 KILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
             K LRRRC + CV +PYFPP +PQKF   HR++GA N+ K LQ
Sbjct:    10 KYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQ 51

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090812 LBD24 "LOB domain-containing protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query:    31 KILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
             K LRRRC + CV +PYFPP +PQKF   HR++GA N+ K LQ
Sbjct:    10 KYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQ 51

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2034163 AS2 "ASYMMETRIC LEAVES 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query:    31 KILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFL 71
             K LRR+C  +CV APYFPP +PQKF   H+VFGASN+ K L
Sbjct:    14 KFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLL 54

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SK08	LBD11_ARATH	No assigned EC number	0.9019	0.7083	0.2198	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.948.1 hypothetical protein (178 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	72
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	4e-23

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score = 83.8 bits (208), Expect = 4e-23
 Identities = 28/47 (59%), Positives = 35/47 (74%)

Query: 26 PCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ 72
          PCAACK LRR+C   CVLAPYFP  +P +F   H++FGASN+ K L+
Sbjct: 1  PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLK 47

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	99.95

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=99.95  E-value=1.2e-29  Score=167.18  Aligned_cols=47  Identities=68%  Similarity=1.283  Sum_probs=46.1

Q ss_pred             CchhhhhhhhcCCCCCccccCCCCCCchHHHHHHHhhChhhHHHhhC
Q 047530           26 PCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQ   72 (72)
Q Consensus        26 pCAACK~lRRrC~~~C~fAPYFPa~~~~~F~~vHrvFG~sNv~KmLq   72 (72)
                      +|||||+|||||++||+||||||++++++|++||||||++||+||||
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~   47 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQ   47 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHH
Confidence            69999999999999999999999999999999999999999999996

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00