Citrus Sinensis ID: 047614

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQV
Secondary Structure (PSIPRED)
cEEEEEEEEEEEEcccEEcccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEcccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEcccccccccEEEEcccccEEEEEEEcHHcHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MIVTVCVFFvgatkgvgfhgkgrlfnlngiptaLSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIEnrlpanykdcksASILIRMSLLVSTVVLAAVfpsfqsvtsLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQV
Flexible Loop (DISEMBL)
MIVTVCVFFVgatkgvgfhgkGRLFNLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSiaqtvkqv
Low Complexity Region (SEG)
MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMsllvstvvlaavFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYEligiliimllvvfvgvlgTYSSIAQTVKQV
Disordered region (IsUnstruct)
*IVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIA******
Disordered Region (DISOPRED)
MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVELIS*************NQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQV
Disordered Region (DISEMBL)
MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQV
Disordered Region (DISPRO)
MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q9FKS8	446	Lysine histidine transpor	no	no	0.662	0.343	0.202	4e-06
P47082	602	Vacuolar amino acid trans	yes	no	0.705	0.270	0.241	2e-05
O22719	451	Lysine histidine transpor	no	no	0.709	0.363	0.213	3e-05
Q8K4D3	475	Proton-coupled amino acid	yes	no	0.696	0.338	0.272	8e-05
Q9C733	453	Lysine histidine transpor	no	no	0.601	0.306	0.229	0.0001
Q924A5	475	Proton-coupled amino acid	yes	no	0.696	0.338	0.277	0.0005

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 61  LLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALT 120
           +++++ +  + Y  +A++GY I+G  V+  + ++L             ++   I  Y + 
Sbjct: 268 VIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAWLIATANIFVVIHVIGSYQIY 327

Query: 121 VMPIATAIENRL--PANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVA 178
            MP+   +E  L    N++   +    +R   + +T+ +   FP F  + +  G F    
Sbjct: 328 AMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAP 387

Query: 179 VSFLLPCVCYLKIFQVHR---NWGYELIGILIIMLLVV 213
            ++ LPCV +L I++  +   +W    + I+  + L+V
Sbjct: 388 TTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMV 425

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.
Arabidopsis thaliana (taxid: 3702)

>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 19/182 (10%)

Query: 59  QVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAG-----P 113
             L  ++ I ++T    AV+G+L++G  V+ ++T N+   +   K V Y +++      P
Sbjct: 422 DCLKTTYKITSVTDIGTAVIGFLMFGNLVKDEITKNVLLTEGYPKFV-YGLISALMTIIP 480

Query: 114 IAKYALTVMPIATAIENRLPANYKD----------CKSASILIRMSLLVSTVVLAAVFPS 163
           IAK  L   PI + ++  +   + D           K   +  R+ + V  V++A  FP 
Sbjct: 481 IAKTPLNARPIVSVLDVLMNVQHIDEAASAIKRRAAKGLQVFNRIFINVVFVLIAINFPE 540

Query: 164 FQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVH-RNWGYELIGILIIMLLVVFVGVLGTYS 222
           F  + +  GA L   +  +LPC  YL++ +   + W  E +   + + + V +  LG  +
Sbjct: 541 FDKIIAFLGAGLCFTICLILPCWFYLRLCKTTIKPW--ERVACHVTICISVVLSTLGVGA 598

Query: 223 SI 224
           +I
Sbjct: 599 AI 600

Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 85/178 (47%), Gaps = 14/178 (7%)

Query: 62  LISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQ----VSSKVVIYTILAGPIAKY 117
           ++++ I    Y  +A++G+  +G NV+  +   L   +    V++  VI  ++      Y
Sbjct: 271 IVAYIIVAFCYFPVALVGFWTFGNNVEENILKTLRGPKGLIIVANIFVIIHLMG----SY 326

Query: 118 ALTVMPIATAIENRL--PANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFL 175
            +  MP+   IE+ +    ++   +     IR + + +T+ +A   P F ++ S  G F+
Sbjct: 327 QVYAMPVFDMIESVMIKKWHFSPTRVLRFTIRWTFVAATMGIAVALPHFSALLSFFGGFI 386

Query: 176 IVAVSFLLPCVCYLKIFQVHR---NWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQ 230
               ++ +PC+ +L + +  R   +W    I I I+ +LV+ +  +G  + +   +KQ
Sbjct: 387 FAPTTYFIPCIIWLILKKPKRFSLSWCINWICI-ILGVLVMIIAPIGGLAKLMNALKQ 443

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 93/180 (51%), Gaps = 19/180 (10%)

Query: 60  VLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKV-VIYTILAGPIAKYA 118
           +L +  AI T+ Y ++  LGYL +G N++  +TLNL    +   V ++Y+I  G    YA
Sbjct: 290 ILYLGMAIITVLYISLGSLGYLQFGANIKGSITLNLPNCWLYQSVKLLYSI--GIFFTYA 347

Query: 119 LTVMPIAT----AIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAF 174
           L     A     AI +R+P +++      + +R +++  T VLA + P    V SL G+ 
Sbjct: 348 LQFYVAAEIIIPAIVSRVPEHFE--LMVDLCVRTAMVCVTCVLAILIPRLDLVISLVGSV 405

Query: 175 LIVAVSFLLPCVCYLKIFQVHRNWGYELIGILI----IMLLVVFVG-VLGTYSSIAQTVK 229
              A++ ++P      + +V   +G  +  + +    ++ ++ FVG V+GTY S+ + ++
Sbjct: 406 SSSALALIIP-----PLLEVVTYYGEGISPLTVTKDALISILGFVGFVVGTYESLCELIQ 460

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Mus musculus (taxid: 10090)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 9/148 (6%)

Query: 72  YPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENR 131
           Y  +A++GY ++G  V   V ++L T   +       ++   I  Y +  MP+   +E  
Sbjct: 286 YFPVALVGYGVFGNAVLDNVLMSLETPVWAIATANLFVVMHVIGSYQIFAMPVFDMVETF 345

Query: 132 L--PANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYL 189
           L    N+K       ++R   +  T+ +  + P F  + +  G F     S+ LPC+ +L
Sbjct: 346 LVKKLNFKPSTVLRFIVRNVYVALTMFIGIMIPFFGGLLAFFGGFAFAPTSYFLPCIMWL 405

Query: 190 KIFQVHR-------NWGYELIGILIIML 210
            I++  R       NW   ++G+++++L
Sbjct: 406 LIYKPKRFSLSWWTNWVCIVLGVVLMIL 433

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 19/180 (10%)

Query: 60  VLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKV-VIYTILAGPIAKYA 118
           +L +  AI T+ Y ++  LGYL +G +++  +TLNL    +   V ++Y+I  G    YA
Sbjct: 290 ILYLGMAIITVLYISLGSLGYLQFGADIKGSITLNLPNCWLYQSVKLLYSI--GIFFTYA 347

Query: 119 LTVMPIAT----AIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAF 174
           L     A     AI +R+P  ++     S   R +++  T VLA + P    V SL G+ 
Sbjct: 348 LQFYVAAEIIIPAIVSRVPERFELVVDLS--ARTAMVCVTCVLAVLIPRLDLVISLVGSV 405

Query: 175 LIVAVSFLLPCVCYLKIFQVHRNWGYELIGILI----IMLLVVFVG-VLGTYSSIAQTVK 229
              A++ ++P      + +V   +G  +  + I    ++ ++ FVG V+GTY S+ + ++
Sbjct: 406 SSSALALIIP-----PLLEVTTYYGEGISPLTITKDALISILGFVGFVVGTYESLWELIQ 460

Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
224143853	395	amino acid transporter [Populus trichoca	0.926	0.541	0.662	4e-74
359494481	407	PREDICTED: vacuolar amino acid transport	0.987	0.560	0.444	5e-48
225465052	404	PREDICTED: vacuolar amino acid transport	0.956	0.547	0.448	2e-47
225452805	428	PREDICTED: vacuolar amino acid transport	0.974	0.525	0.447	1e-46
147833561	405	hypothetical protein VITISV_015128 [Viti	0.987	0.562	0.444	6e-46
359488998	417	PREDICTED: vacuolar amino acid transport	0.974	0.539	0.443	7e-46
359494485	407	PREDICTED: vacuolar amino acid transport	0.987	0.560	0.444	8e-46
359488992	428	PREDICTED: vacuolar amino acid transport	0.974	0.525	0.451	8e-46
225465048	406	PREDICTED: vacuolar amino acid transport	0.969	0.551	0.440	7e-45
296082908	383	unnamed protein product [Vitis vinifera]	0.969	0.584	0.449	9e-45

>gi|224143853|ref|XP_002325097.1| amino acid transporter [Populus trichocarpa] gi|222866531|gb|EEF03662.1| amino acid transporter [Populus trichocarpa]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 149/225 (66%), Positives = 175/225 (77%), Gaps = 11/225 (4%)

Query: 13  TKGVGFHGKGRLFNLNGIPTALSFYS-------LVELISKSTKKQVIVACSGNQVLLISF 65
           TKGVGFHGKG L NL G+PTALS Y+       L   I  S +K+   +    +V+ +SF
Sbjct: 174 TKGVGFHGKGSLINLQGVPTALSLYAFCYGAHALFPSIYNSMRKKNQFS----KVMFVSF 229

Query: 66  AICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIA 125
            ICTIT  +MAVLGYLIYGQNVQSQVTLNL T+++SSK+ IY+ILAGPIAKYALT+ PIA
Sbjct: 230 VICTITNLSMAVLGYLIYGQNVQSQVTLNLPTQKLSSKIAIYSILAGPIAKYALTITPIA 289

Query: 126 TAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPC 185
           TAIE+ LP  Y+D KS  IL+RMSLL+STVV+A VFPSFQS+TSLSGA LIV VSF LPC
Sbjct: 290 TAIESVLPDRYQDSKSIGILVRMSLLISTVVMAMVFPSFQSLTSLSGAALIVIVSFFLPC 349

Query: 186 VCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQ 230
            CYLKIF+V++ WG EL GIL IML+ V VG +GTYSSIAQTVK 
Sbjct: 350 ACYLKIFKVYQKWGIELAGILTIMLMSVVVGAVGTYSSIAQTVKH 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494481|ref|XP_003634786.1| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082671|emb|CBI21676.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 156/234 (66%), Gaps = 6/234 (2%)

Query: 1   MIVTVCVFFVGATKGVGFHGKGR-LFNLNGIPTALSFYSLVELISKSTKKQVIVACSG-- 57
           +++ V +F VGA  GVGFH KG  L N++ +P  +S Y +V          + V+     
Sbjct: 175 LVILVSIFCVGAFNGVGFHAKGSILLNVDRLPITVSLY-IVSFGGHPVIPPIYVSMRDRY 233

Query: 58  --NQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIA 115
             ++VLL SF + T+TY +MA++GYL+YG  V+S++TLNL T +VS+++ IYT L  PIA
Sbjct: 234 QFSKVLLFSFVLATLTYMSMAIVGYLMYGDRVESEITLNLPTSKVSARIAIYTTLVIPIA 293

Query: 116 KYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFL 175
           +YAL + PIATAIE  +  NYK+ ++  + IR++LL ST ++A  FP ++S+ ++ G+  
Sbjct: 294 RYALVLTPIATAIEGGISENYKNKRAVRLFIRVALLFSTAIVAYYFPYYESLMAIVGSIF 353

Query: 176 IVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVK 229
           +V+ SFLLPC+CYLKI  ++  W  E IGI  I+L   F GVLGTYSSI++ V+
Sbjct: 354 VVSGSFLLPCLCYLKISDLNWGWNCEQIGIRGIILFGTFAGVLGTYSSISELVR 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465052|ref|XP_002265265.1| PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera] gi|147833562|emb|CAN75006.1| hypothetical protein VITISV_015129 [Vitis vinifera]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/234 (44%), Positives = 157/234 (67%), Gaps = 13/234 (5%)

Query: 1   MIVTVCVFFVGATKGVGFHGKGR-LFNLNGIPTALSFY-------SLVELISKSTKKQVI 52
           +++ V +F VGA  GVGFH KG  L NL+ +PTA+  Y        ++  I  S +    
Sbjct: 173 LVIVVSIFCVGAFDGVGFHAKGSVLLNLDTLPTAVGLYIVSFGGHPVIPSIYMSMRD--- 229

Query: 53  VACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAG 112
            +C  ++VL+ SF + T+ Y T+A+LGYL+YG  ++S++TLNL T +VS +V IYT L  
Sbjct: 230 -SCQFSKVLVFSFILATLNYMTIAILGYLMYGDGIESEITLNLPT-KVSGRVAIYTTLLI 287

Query: 113 PIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSG 172
           P+ +Y+L V PIATAIE  L   YK+ K   +LIR++LL+STV++A VFP ++S+ ++ G
Sbjct: 288 PVTRYSLLVAPIATAIEGGLSEKYKNQKPVRLLIRVALLISTVIVACVFPYYESLMAIVG 347

Query: 173 AFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQ 226
           +  +V+ SFLLPC+CYLKI  ++ NW  E +GI+ I++  +  GVLGTYSSI +
Sbjct: 348 SVFVVSASFLLPCLCYLKISDLNWNWNCEQMGIVGIIVFGILAGVLGTYSSIFE 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452805|ref|XP_002283468.1| PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera] gi|296082904|emb|CBI22205.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 150/239 (62%), Gaps = 14/239 (5%)

Query: 1   MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLV--------ELISKSTKKQVI 52
           +I+   + + GA  GVGF  KG   N  GIPTA+S Y+           L +   KK   
Sbjct: 196 IIILGSILWTGAFDGVGFDEKGTSLNWQGIPTAVSLYAFCYCAHPVFPTLYTSMRKKHQF 255

Query: 53  VACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAG 112
                + VLL+ F  CTITY  MA+LGYL++G NVQSQ+TLNL  E++SS++ IYT L  
Sbjct: 256 -----SNVLLVCFIFCTITYAAMAILGYLMFGSNVQSQITLNLPIEKLSSRIAIYTTLVN 310

Query: 113 PIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSG 172
           PI+KYAL V PI  A EN LP  YK  +  S++IR +L+ ST+++A   P F S+ SL G
Sbjct: 311 PISKYALMVTPIVDATENWLPYYYKK-RPFSLIIRSTLVFSTIIVALTVPFFGSLMSLVG 369

Query: 173 AFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQV 231
           AFL V  S LLPC+CYLKI  ++  +G EL+ I+ ++L+ +  G++GTY+SI + + Q+
Sbjct: 370 AFLSVTASILLPCLCYLKISGIYHKFGVELVIIIGVVLMGISAGIMGTYTSIVEIIGQL 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833561|emb|CAN75005.1| hypothetical protein VITISV_015128 [Vitis vinifera]

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 156/234 (66%), Gaps = 6/234 (2%)

Query: 1   MIVTVCVFFVGATKGVGFHGKGR-LFNLNGIPTALSFYSLVELISKSTKKQVIVACSG-- 57
           +++ V +F VGA  GVGFH KG  L N++ +P  +S Y +V          + V+     
Sbjct: 173 LVILVSIFCVGAFNGVGFHAKGSILLNVDRLPITVSLY-IVSFGGHPVIPPIYVSMRDRY 231

Query: 58  --NQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIA 115
             ++VLL SF + T+TY +MA++GYL+YG  V+S++TLNL T +VS+++ IYT L  PIA
Sbjct: 232 QFSKVLLFSFVLATLTYMSMAIVGYLMYGDRVESEITLNLPTSKVSARITIYTTLVIPIA 291

Query: 116 KYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFL 175
           +YAL + PIATAIE  +  NYK+ ++  + IR++LL ST ++A  FP ++S+ ++ G+  
Sbjct: 292 RYALVLTPIATAIEGGISENYKNKRAVRLFIRVALLFSTAIVAYYFPYYESLMAIVGSIF 351

Query: 176 IVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVK 229
           +V+ SFLLPC+CYLKI  ++  W  E IGI  I+L   F GVLGTYSSI++ V+
Sbjct: 352 VVSGSFLLPCLCYLKISDLNWGWNCEQIGIXGIILFGTFAGVLGTYSSISELVR 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488998|ref|XP_003633855.1| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082909|emb|CBI22210.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 106/239 (44%), Positives = 149/239 (62%), Gaps = 14/239 (5%)

Query: 1   MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLV--------ELISKSTKKQVI 52
           +I+   + + GA  GVGF  KG   N  GIPTA+S Y+           L +   KK   
Sbjct: 185 IIILGSILWTGAFDGVGFDEKGTSLNWQGIPTAVSLYAFCYCAHPVFPTLYTSMRKKHQF 244

Query: 53  VACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAG 112
                + VLL+ F  CTITY  MA+LGYL++G NVQSQ+TLNL  E++SS++ IYT L  
Sbjct: 245 -----SNVLLVCFIFCTITYAAMAILGYLMFGSNVQSQITLNLPIEKLSSRIAIYTTLVN 299

Query: 113 PIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSG 172
           PI+KYAL V PI  A EN LP  YK  +  S++IR +L+ ST+++A   P F S+ SL G
Sbjct: 300 PISKYALMVTPIVNATENWLPYYYKK-RPFSLIIRSTLVFSTIIVALTVPFFGSLMSLVG 358

Query: 173 AFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQV 231
           A L V  S LLPC+CYLKI  ++  +G EL+ I+ ++L+ +  G++GTY+SI + + Q+
Sbjct: 359 ALLSVPASILLPCLCYLKISGIYHKFGVELVIIIGVVLMGISAGIMGTYTSIVEIIGQL 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494485|ref|XP_002265224.2| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082672|emb|CBI21677.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 156/234 (66%), Gaps = 6/234 (2%)

Query: 1   MIVTVCVFFVGATKGVGFHGKGR-LFNLNGIPTALSFYSLVELISKSTKKQVIVACSG-- 57
           +++ V +F VGA  GVGFH KG  L N++ +P  +S Y +V          + V+     
Sbjct: 175 LVILVSIFCVGAFNGVGFHAKGSILLNVDRLPITVSLY-IVSFGGHPVIPPIYVSMRDRY 233

Query: 58  --NQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIA 115
             ++VLL SF + T+TY +MA++GYL+YG  V+S++TLNL T +VS+++ IYT L  PIA
Sbjct: 234 QFSKVLLFSFVLATLTYMSMAIVGYLMYGDRVESEITLNLPTSKVSARITIYTTLVIPIA 293

Query: 116 KYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFL 175
           +YAL + PIATAIE  +  NYK+ ++  + IR++LL ST ++A  FP ++S+ ++ G+  
Sbjct: 294 RYALVLTPIATAIEGGISENYKNKRAVRLFIRVALLFSTAIVAYYFPYYESLMAIVGSIF 353

Query: 176 IVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVK 229
           +V+ SFLLPC+CYLKI  ++  W  E IGI  I+L   F GVLGTYSSI++ V+
Sbjct: 354 VVSGSFLLPCLCYLKISDLNWGWNCEQIGIGGIILFGTFAGVLGTYSSISELVR 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488992|ref|XP_002283458.2| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082903|emb|CBI22204.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 147/239 (61%), Gaps = 14/239 (5%)

Query: 1   MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLV--------ELISKSTKKQVI 52
           +I+   + + G   GVGFHGKG   N  GIPTA S Y+           L +   KK   
Sbjct: 196 IIILGSILWTGVFDGVGFHGKGTTLNWKGIPTAFSLYAFCYCAHPVFPTLYTSMRKKNQF 255

Query: 53  VACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAG 112
                + VLL+ F  CTITY  MAVLGYL++G  VQSQ+TLNL  E++SS+V IYT L  
Sbjct: 256 -----STVLLVGFVFCTITYAAMAVLGYLMFGSEVQSQITLNLPIEKLSSRVAIYTTLVN 310

Query: 113 PIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSG 172
           PI+KYAL V+PI  A EN  P      +  S+LIR +L+ ST+++A   P F S+ SL G
Sbjct: 311 PISKYALIVVPIVNATENWFPYCCNR-RLFSLLIRTALVFSTIIVALTVPFFGSLMSLVG 369

Query: 173 AFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQV 231
           AFL V  S LLPC+CYLKI  ++  +G EL+ I+ +ML+ +  G++GTY+SI + + Q+
Sbjct: 370 AFLSVTGSILLPCLCYLKISGIYHKFGIELVIIIGVMLMGISAGIVGTYTSIVEIIGQL 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465048|ref|XP_002265140.1| PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera] gi|147833560|emb|CAN75004.1| hypothetical protein VITISV_015127 [Vitis vinifera]

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 151/236 (63%), Gaps = 12/236 (5%)

Query: 1   MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFY-------SLVELISKSTKKQVIV 53
           +I+ V +F VG   GVGFH KG L N+  +PT +S Y        ++  I  S +     
Sbjct: 174 LIILVSIFCVGLFNGVGFHEKGTLLNVKSLPTGVSLYIVCFAGHPVIPSIYTSMRNTY-- 231

Query: 54  ACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGP 113
               ++VLL SF + T TY  MA++GYL+YG +V+SQ+TL+L T +V ++V IYT L  P
Sbjct: 232 --QFSKVLLFSFVLTTFTYLAMAMVGYLMYGDSVESQITLSLPTSKVCAEVAIYTTLLIP 289

Query: 114 IAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGA 173
           I +YAL V P+ATAIE  L  NYK+ ++  +LIR+ LL+STV++A VFP ++S+ ++ G+
Sbjct: 290 ITRYALMVTPVATAIEGGLSENYKNQRTVRLLIRVGLLISTVIVAYVFPYYESLMAIVGS 349

Query: 174 FLIVAVSFLLPCVCYLKIFQVHR-NWGYELIGILIIMLLVVFVGVLGTYSSIAQTV 228
             +V+ SFLLPC+CYL+I    R  W  E +GI+ I++     GVLGTYSS+   V
Sbjct: 350 IFVVSASFLLPCLCYLRINSDLRWGWNCEQMGIVGILVFGTLAGVLGTYSSVYDLV 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082908|emb|CBI22209.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 103/229 (44%), Positives = 140/229 (61%), Gaps = 5/229 (2%)

Query: 7   VFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVELISKSTKKQVIVACSGNQ----VLL 62
           + + G   GVGFHGKG   N  GIPTA S Y+                   NQ    +LL
Sbjct: 156 ILWTGVFDGVGFHGKGTTLNWKGIPTAFSLYAFCYCAHPVFPTLYTSMRKKNQFSTVILL 215

Query: 63  ISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVM 122
           + F  CTI Y  MAVLGYL++G  VQSQ+TLNL  E++SS+V IYT L  PI+KYAL V 
Sbjct: 216 VCFIFCTIAYAAMAVLGYLMFGSEVQSQITLNLPIEKLSSRVAIYTTLVNPISKYALMVA 275

Query: 123 PIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFL 182
           PI  A EN  P NY + +S S+LIR +L+ ST+++A   P F S+ S+  AF  V  S L
Sbjct: 276 PIVNATENCFP-NYCNRRSFSLLIRTALVFSTIIVALTVPFFGSLMSMVVAFSTVTGSIL 334

Query: 183 LPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQV 231
           LPC+CYLKI  ++  +G EL+ ++ +ML+    G++GTY+SI + + Q+
Sbjct: 335 LPCLCYLKISGIYHKFGIELVIMIGVMLMGTSAGIMGTYTSIVEIIGQL 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2087012	405	AT3G28960 "AT3G28960" [Arabido	0.844	0.481	0.429	4.4e-36
TAIR|locus:2150911	423	AT5G15240 [Arabidopsis thalian	0.965	0.527	0.343	1.4e-32
TAIR|locus:2185158	550	AT5G02180 [Arabidopsis thalian	0.831	0.349	0.329	1.5e-28
TAIR|locus:2185143	526	AT5G02170 [Arabidopsis thalian	0.991	0.435	0.291	4.2e-28
TAIR|locus:2083549	528	AT3G09340 "AT3G09340" [Arabido	0.835	0.365	0.319	9.4e-27
TAIR|locus:2083529	524	AT3G09330 "AT3G09330" [Arabido	0.835	0.368	0.319	1.5e-26
TAIR|locus:2063255	536	AT2G41190 [Arabidopsis thalian	0.982	0.423	0.281	3.6e-26
TAIR|locus:2056118	550	AT2G39130 [Arabidopsis thalian	0.826	0.347	0.319	4e-26
TAIR|locus:2082652	546	AT3G54830 "AT3G54830" [Arabido	0.783	0.331	0.312	8.9e-21
TAIR|locus:2149045	426	AT5G16740 [Arabidopsis thalian	0.822	0.446	0.276	5.8e-14

TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 85/198 (42%), Positives = 110/198 (55%)

Query:     7 VFFVGATKGVGFHGKGRLFNLNGIPTALSFYSL---VELISKSTKKQVIVACSGNQVLLI 63
             + ++GA  G+GFH KG+L N +GIPTALS Y+       +  +    +      N VLLI
Sbjct:   178 ISWIGAFDGIGFHQKGKLINWSGIPTALSLYAFCYGAHPVLPTLYSSMKSKHQFNNVLLI 237

Query:    64 SFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMP 123
              F +CTI Y +MAVLGYL+YG    SQ+TLNL   + SSKV IYT L  P+AKYAL + P
Sbjct:   238 CFILCTIGYTSMAVLGYLMYGSQTLSQITLNLPIHKTSSKVAIYTTLVNPVAKYALMITP 297

Query:   124 IATAIENRLPANYKDCKSASILIRMXXXXXXXXXXXXFPSFQSVTSLSGAFLIVAVSFLL 183
                 I++  P+ Y       +LI               P F  + SL GA L V VS LL
Sbjct:   298 TVNTIKDWFPSRYSKKAYLHLLISTFFIISSVVIAETLPFFGYMMSLVGALLSVTVSILL 357

Query:   184 PCVCYLKIFQVHRNWGYE 201
             PC+CYLKIF  ++  G E
Sbjct:   358 PCLCYLKIFGNYKKIGCE 375

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 78/227 (34%), Positives = 121/227 (53%)

Query:     2 IVTVCVFFVGATKGVGF-HGKGRLFNLNGIPTALSFYSL---VELISKSTKKQVIVACSG 57
             ++   +F VGA +GVGF +    +F LNG+ T++S Y+       +  +    +      
Sbjct:   190 VILASIFSVGAFEGVGFKNNDSEVFRLNGVATSVSLYAFCYCAHPVFPTLYTSMKNKRQF 249

Query:    58 NQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKY 117
             + V++I F ICT  Y ++AVLGYL+YG +V+SQ+TLNL T+++SSKV I+T L  PIAK+
Sbjct:   250 SNVMIICFTICTFIYASVAVLGYLMYGSDVESQITLNLPTDKLSSKVAIWTTLVNPIAKF 309

Query:   118 ALTVMPIATAIENRLPANYKDCKSASILIRMXXXXXXXXXXXXFPSFQSVTSLSGAFLIV 177
             AL V PI  A+ +R      + +++  L+               P F  + SL GAFL  
Sbjct:   310 ALMVTPIIDAMRSRFSRVLPNKRASGFLLSTILVTSNVIVALLLPFFGDLMSLVGAFLSA 369

Query:   178 AVSFLLPCVCYLKIFQVHRNWGYEXXXXXXXXXXXXXXXXXXTYSSI 224
             + S +LPC+CYLKI   ++  G+E                  TY ++
Sbjct:   370 SASVILPCLCYLKISGKYQRLGFETLVLIGITLTGIVVVITGTYQAV 416

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 65/197 (32%), Positives = 105/197 (53%)

Query:     1 MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVELISKSTKKQVIVACSGNQ- 59
             +++ +C+F+VGA  G+GFH  GR+F+L+ +P  +  +        S    +  +      
Sbjct:   316 ILLGICLFWVGAVDGIGFHATGRVFDLSNLPVTIGIFGF-GYSGHSVFPNIYSSMKDPSR 374

Query:    60 ---VLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAK 116
                VL+I F+ CT+ Y  +AV GY ++G+ V+SQ TLN+      SKV ++T +  P+ K
Sbjct:   375 FPLVLVICFSFCTVLYIAVAVCGYTMFGEAVESQFTLNMPKHFFPSKVAVWTAVITPMTK 434

Query:   117 YALTVMPIATAIENRLPANYKDCKSASILIRMXXXXXXXXXXXXFPSFQSVTSLSGAFLI 176
             YALT+ PI  ++E  +P      +  SIL R              P F  V +L G+FL 
Sbjct:   435 YALTITPIVMSLEELIPTAKMRSRGVSILFRTMLVTSTLVVALSVPFFAIVAALIGSFLA 494

Query:   177 VAVSFLLPCVCYLKIFQ 193
             + V+ + PC+CYL I +
Sbjct:   495 MLVALIFPCLCYLSILK 511

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 4.2e-28, P = 4.2e-28
 Identities = 69/237 (29%), Positives = 122/237 (51%)

Query:     1 MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVELISKSTKKQVIVACSGNQ- 59
             +++ +C+F+ G+  GVGFH  G+  ++  IP A+  Y      S S    +  +      
Sbjct:   291 ILLALCLFWAGSVDGVGFHISGQALDITNIPVAIGIYGF-GFGSHSVFPNIYSSMKEPSK 349

Query:    60 ---VLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAK 116
                VLLISFA CT+ Y  +AV G+ ++G  +QSQ TLN+     SSK+ ++T +  P+ K
Sbjct:   350 FPTVLLISFAFCTLFYIAVAVCGFTMFGDAIQSQFTLNMPPHFTSSKIAVWTAVVTPMTK 409

Query:   117 YALTVMPIATAIENRLPANYKDCKS--ASILIRMXXXXXXXXXXXXFPSFQSVTSLSGAF 174
             YALT+ P+  ++E  +P++ +  +S   S+L R              P F +V +L G+F
Sbjct:   410 YALTITPVMLSLEELIPSSSRKMRSKGVSMLFRTILVLSTLVVALTVPFFATVAALIGSF 469

Query:   175 LIVAVSFLLPCVCYLKIFQVHRNWGYEXXXXXXXXXXXXXXXXXXTYSSIAQTVKQV 231
             + + ++ + PC+CY+ I +  R   ++                  TYS+IA+ + ++
Sbjct:   470 IAMLIALIFPCLCYISIMK-GRLTNFQIGICILIVIIGIVSGCCGTYSAIARLIGEM 525

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 63/197 (31%), Positives = 102/197 (51%)

Query:     1 MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLV---ELISKSTKKQVIVACSG 57
             +++ +C+F+VG+  GVGFH  G+  +L  +P A+  +        +  S    +      
Sbjct:   290 ILLALCLFWVGSVDGVGFHTGGKALDLANLPVAIGIFGFGFSGHAVLPSIYSSMKEPSKF 349

Query:    58 NQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKY 117
               VLLISF  C   Y  +A+ GY ++G+ +QSQ TLN+  +  +SK+ ++T +  P+ KY
Sbjct:   350 PLVLLISFGFCVFFYIAVAICGYSMFGEAIQSQFTLNMPQQYTASKIAVWTAVVVPMTKY 409

Query:   118 ALTVMPIATAIENRLPANYK-DCKSASILIRMXXXXXXXXXXXXFPSFQSVTSLSGAFLI 176
             AL + PI   +E  +P + K      SI I+             FP F  + +L G+FL 
Sbjct:   410 ALALTPIVLGLEELMPPSEKMRSYGVSIFIKTILVLSTLVVALTFPFFAIMGALMGSFLA 469

Query:   177 VAVSFLLPCVCYLKIFQ 193
               V F+ PC+CYL I +
Sbjct:   470 TLVDFIFPCLCYLSILK 486

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 63/197 (31%), Positives = 102/197 (51%)

Query:     1 MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLV---ELISKSTKKQVIVACSG 57
             +++ +C+F+VG+  GVGFH  G+  +L  +P A+  +        +  S    +      
Sbjct:   290 ILLALCLFWVGSVDGVGFHTGGKSLDLANLPVAIGIFGFGFSGHAVLPSIYSSMKEPSKF 349

Query:    58 NQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKY 117
               VLLISF  C   Y  +A+ GY ++G+ +QSQ TLN+  +  +SK+ ++T +  P+ KY
Sbjct:   350 PLVLLISFGFCVFFYIVVAICGYSMFGEAIQSQFTLNMPQQYTASKIAVWTAVVVPMTKY 409

Query:   118 ALTVMPIATAIEN-RLPANYKDCKSASILIRMXXXXXXXXXXXXFPSFQSVTSLSGAFLI 176
             AL + PI   +E   LP+        SI I+             FP F  + +L G+FL 
Sbjct:   410 ALALTPIVLGLEELMLPSEKMRSYGVSIFIKTILVLSTLVVALTFPFFAIMGALMGSFLA 469

Query:   177 VAVSFLLPCVCYLKIFQ 193
             + V F+ PC+CYL I +
Sbjct:   470 MLVDFIFPCLCYLSILK 486

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 3.6e-26, P = 3.6e-26
 Identities = 65/231 (28%), Positives = 113/231 (48%)

Query:     2 IVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLV---ELISKSTKKQVIVACSGN 58
             ++ V VFF+G T G+GFH  G+    NGIP A+  Y        +  +  + +      N
Sbjct:   304 LIAVSVFFLGTTGGIGFHHTGQAVKWNGIPFAIGIYGFCYSGHSVFPNIYQSMADKTKFN 363

Query:    59 QVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYA 118
             + ++  F IC + Y  +A++GYL++G+   SQ+TLN+  +Q  SKV  +T +  P  KYA
Sbjct:   364 KAVITCFIICVLLYGGVAIMGYLMFGEATLSQITLNMPQDQFFSKVAQWTTVVSPFTKYA 423

Query:   119 LTVMPIATAIENRLPANYKDCKSASILIRMXXXXXXXXXXXXFPSFQSVTSLSGAFLIVA 178
             L + P+A +IE  LP    +     +L+R              P F  + +L G+ L + 
Sbjct:   424 LLMNPLARSIEELLPERMSENIWCFLLLRTALVASSVCSAFLIPFFGLMMALIGSLLSIL 483

Query:   179 VSFLLPCVCYLKIFQVHRNWGYEXXXXXXXXXXXXXXXXXXTYSSIAQTVK 229
             V+ ++P +C++KI   ++    +                  TYSS+A+ ++
Sbjct:   484 VAIIMPALCFIKIMG-NKATRTQMILSSIIVAIGVVSGTLGTYSSVAKIIR 533

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 62/194 (31%), Positives = 102/194 (52%)

Query:     1 MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLV---ELISKSTKKQVIVACSG 57
             ++V +C+F++G    VG H KG   NL+ +P A+  Y        +  +    +      
Sbjct:   316 VLVVLCLFWIGLVDEVGIHSKGTTLNLSTLPVAIGLYGYCYSGHAVFPNIYTSMAKPSQY 375

Query:    58 NQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKY 117
               VLL  F ICT+ Y  +AV+GY ++G++ QSQ TLNL  + +++K+ ++T +  P  KY
Sbjct:   376 PAVLLTCFGICTLMYAGVAVMGYTMFGESTQSQFTLNLPQDLIATKIAVWTTVVNPFTKY 435

Query:   118 ALTVMPIATAIENRLPANYKDCKSASILIRMXXXXXXXXXXXXFPSFQSVTSLSGAFLIV 177
             ALT+ P+A ++E  +P+ +      +I IR              P F  V SL G+ L +
Sbjct:   436 ALTISPVAMSLEELIPSRHIRSHWYAIGIRTLLVFSTLLVGLAIPFFGLVMSLIGSLLTM 495

Query:   178 AVSFLLPCVCYLKI 191
              V+ +LP  C+L I
Sbjct:   496 LVTLILPPACFLSI 509

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 8.9e-21, P = 8.9e-21
 Identities = 60/192 (31%), Positives = 97/192 (50%)

Query:     1 MIVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLVEL---ISKSTKKQVIVACSG 57
             ++V +C+F+VG    VG H KG   NL  +P ++  Y        +  +    +      
Sbjct:   306 VLVVLCLFWVGLVDDVGIHSKGTPLNLATLPVSVGLYGYCYSGHGVFPNIYTSMAKPSQF 365

Query:    58 NQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKY 117
             + VLL SF ICT+ Y  +AV+GY ++G++ +SQ TLNL  + V+SK+ ++T +  P  KY
Sbjct:   366 SAVLLASFGICTLMYAGVAVMGYSMFGESTESQFTLNLPQDLVASKIALWTTVVNPFTKY 425

Query:   118 ALT-------VMPIATAIENRLPANYKDCKSASILIRMXXXXXXXXXXXXFPSFQSVTSL 170
              L+       +   A ++E  +P+NY   +  +I IR              P F  V SL
Sbjct:   426 PLSRNIQRLFIYLFAMSLEELIPSNYGKSRFYAIAIRSALAISTLLVGLAIPFFGLVMSL 485

Query:   171 SGAFLIVAVSFL 182
              G+FL + + FL
Sbjct:   486 IGSFLTMLI-FL 496

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 5.8e-14, P = 5.8e-14
 Identities = 54/195 (27%), Positives = 86/195 (44%)

Query:     2 IVTVCVFFVGATKGVGFHGKGRLFNLNGIPTALSFYSLV---ELISKSTKKQVIVACSGN 58
             I+   V +     GV   GK  +  L  IPT    Y       ++  +    +       
Sbjct:   187 IIFGSVVYTAIFGGVIDDGKIPVLRLENIPTVSGIYLFSFGGHIVFPNLYTSMKDPSKFT 246

Query:    59 QVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYA 118
             +V ++SFA  T  Y  +A+ G  ++G +V SQ+TL+L    V +K+ ++  +  P+ KYA
Sbjct:   247 KVSIVSFATVTALYGALAITGAKMFGPSVNSQITLSLPKHLVVTKIALWATVLTPMTKYA 306

Query:   119 LTVMPIATAIENRLPANYKDCKS--ASILIRMXXXXXXXXXXXXFPSFQSVTSLSGAFLI 176
             L   P+A  +E  LP+   D     A  L+               P F  V SL+G+ + 
Sbjct:   307 LEFAPLAIQLERSLPSTMTDRTKLVARGLMGSALLLVILALALTVPYFGYVLSLTGSLVS 366

Query:   177 VAVSFLLPCVCYLKI 191
             V ++  LP   YLKI
Sbjct:   367 VTIAVTLPSAFYLKI 381

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	6e-13

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 60  VLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYAL 119
           VLL +  I T+ Y  + ++GYL +G NV+  + LNL        +    ++   +  Y L
Sbjct: 231 VLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPL 290

Query: 120 TVMPIATAIEN----RLPANYKDCKSAS--ILIRMSLLVSTVVLAAVFPSFQSVTSLSGA 173
              PI   +EN    +  +   + KS    ++IR  L+V T ++A   P      SL GA
Sbjct: 291 QAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGA 350

Query: 174 FLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTV 228
                ++F+LP + +LK+ +  +    +L    I+ ++ + +G+L     +A  +
Sbjct: 351 TSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLI 405

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	99.97
PTZ00206	467	amino acid transporter; Provisional	99.97
PLN03074	473	auxin influx permease; Provisional	99.97
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.96
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.96
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.91
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.09
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.27
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.26
PRK15132	403	tyrosine transporter TyrP; Provisional	97.52
PRK10483	414	tryptophan permease; Provisional	97.52
PRK09664	415	tryptophan permease TnaB; Provisional	96.92
PRK10655	438	potE putrescine transporter; Provisional	96.33
PRK13629	443	threonine/serine transporter TdcC; Provisional	95.89
PRK11021	410	putative transporter; Provisional	95.86
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	95.82
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	95.77
PRK10644	445	arginine:agmatin antiporter; Provisional	95.64
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	95.63
PRK10746	461	putative transport protein YifK; Provisional	95.55
PRK11357	445	frlA putative fructoselysine transporter; Provisio	95.45
TIGR00814	397	stp serine transporter. The HAAAP family includes	95.37
KOG1287	479	consensus Amino acid transporters [Amino acid tran	94.94
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	94.92
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	94.41
PRK10249	458	phenylalanine transporter; Provisional	94.34
PRK10197	446	gamma-aminobutyrate transporter; Provisional	94.01
TIGR00907	482	2A0304 amino acid permease (GABA permease).	93.72
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	93.25
TIGR00913	478	2A0310 amino acid permease (yeast).	93.24
TIGR00909	429	2A0306 amino acid transporter.	93.24
PRK10836	489	lysine transporter; Provisional	92.95
PRK10238	456	aromatic amino acid transporter; Provisional	92.72
PRK11387	471	S-methylmethionine transporter; Provisional	92.7
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	92.31
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	92.0
TIGR00930	953	2a30 K-Cl cotransporter.	91.94
TIGR00906	557	2A0303 cationic amino acid transport permease.	91.9
TIGR00911	501	2A0308 L-type amino acid transporter.	91.41
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	90.99
PRK15238	496	inner membrane transporter YjeM; Provisional	90.65
PRK10580	457	proY putative proline-specific permease; Provision	90.22
COG0531	466	PotE Amino acid transporters [Amino acid transport	89.93
TIGR00912	359	2A0309 spore germination protein (amino acid perme	89.42
PRK15049	499	L-asparagine permease; Provisional	88.41
COG1457	442	CodB Purine-cytosine permease and related proteins	82.93

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-39  Score=290.89  Aligned_cols=215  Identities=22%  Similarity=0.326  Sum_probs=191.8

Q ss_pred             EeeeecCcccCCCccccccCChhhhhhhhhhc--------cC-cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614            9 FVGATKGVGFHGKGRLFNLNGIPTALSFYSLV--------EL-ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLG   79 (231)
Q Consensus         9 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~fa--------p~-~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~G   79 (231)
                      +|-..|..++++++...+|+++|+++|+..||        |. |+||+|++| .++||  +++.++.+++.+|..+|++|
T Consensus       222 ~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F-~g~~g--VLn~~M~~V~~ly~~~Gf~G  298 (449)
T KOG1304|consen  222 YYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKF-PGPFG--VLNLGMGIVTLLYIFLGFFG  298 (449)
T ss_pred             HHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhc-CCccc--hHHHHHHHHHHHHHHHHHHH
Confidence            34455666788888899999999999977665        88 999999999 45544  99999999999999999999


Q ss_pred             hhhcCCCchhhHhhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCC--CcchhHHHHHHHHHHHHHHH
Q 047614           80 YLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYK--DCKSASILIRMSLLVSTVVL  157 (231)
Q Consensus        80 Y~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~--~~~~~~~~~r~~~~~~~~~i  157 (231)
                      |++|||++++.|+.|+|++ +..+.+++++++.+..+||||++|+.+.+|+++.++.+  .+++..+.+|..+++++..+
T Consensus       299 Yl~fG~~v~~sITLNLP~~-~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~i  377 (449)
T KOG1304|consen  299 YLAFGDDVKGSITLNLPQE-ILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLI  377 (449)
T ss_pred             HhhccccccceEEecCCcc-HHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999995 55677788899999999999999999999987665422  14677899999999999999


Q ss_pred             HhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhccc--CCchHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047614          158 AAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVH--RNWGYELIGILIIMLLVVFVGVLGTYSSIAQT  227 (231)
Q Consensus       158 A~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~--~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l  227 (231)
                      |..+|+++.+++|+||++|+.+.+++|+++|++.++++  +..+|+++++.+++++|+++++.|||.|++|+
T Consensus       378 A~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  378 AVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            99999999999999999999999999999999999765  35679999999999999999999999999874

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.97  E-value=1.9e-31  Score=240.86  Aligned_cols=217  Identities=24%  Similarity=0.436  Sum_probs=189.1

Q ss_pred             EEEeeeecCcccCCC-ccccccCCh---hhhhhhhhhc-------cC--cCCCCcccccccccCccchHhHHHHHHHHhh
Q 047614            7 VFFVGATKGVGFHGK-GRLFNLNGI---PTALSFYSLV-------EL--ISKSTKKQVIVACSGNQVLLISFAICTITYP   73 (231)
Q Consensus         7 i~~~g~~~~~~~~~~-~~~~~~~~~---~~~~g~~~fa-------p~--~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~   73 (231)
                      .++.|+.+|++.+++ ....++...   ++++|+++|+       |+  ++||+|+||      +|++..++..++.+|.
T Consensus       203 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f------~~~~lis~~~~~~~y~  276 (437)
T KOG1303|consen  203 LIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKF------KKALLISYIIVTFLYF  276 (437)
T ss_pred             HHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhh------hhHHHHHHHHHHHHHH
Confidence            456678888877554 445555544   4999999997       66  999999999      9999999999999999


Q ss_pred             hhhhhhhhhcCCCchhhHhhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCC----CcchhHHHHHHH
Q 047614           74 TMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYK----DCKSASILIRMS  149 (231)
Q Consensus        74 ~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~----~~~~~~~~~r~~  149 (231)
                      .+++.||++|||+++|+++.|++...+..+.+++++.+|++.+|+++.+|+.+.+|+....+++    ...+.|...|+.
T Consensus       277 ~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~  356 (437)
T KOG1303|consen  277 PVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTF  356 (437)
T ss_pred             HHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhH
Confidence            9999999999999999999999644456788999999999999999999999999998876544    234589999999


Q ss_pred             HHHHHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchHHHHHHHHH-HHHHHHHHHHhHHHHHHHHH
Q 047614          150 LLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILII-MLLVVFVGVLGTYSSIAQTV  228 (231)
Q Consensus       150 ~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~i-~~~Gi~~~v~Gt~~si~~l~  228 (231)
                      ++..+.++|+.+|+|+++++++||+...++++++|+++|++.+|.+ +...+|..++.+ +++|+++++....+++.+++
T Consensus       357 ~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~-~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li  435 (437)
T KOG1303|consen  357 FVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPK-RFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLI  435 (437)
T ss_pred             HHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998766 556677888888 79999999999999999887


Q ss_pred             hh
Q 047614          229 KQ  230 (231)
Q Consensus       229 ~~  230 (231)
                      .+
T Consensus       436 ~~  437 (437)
T KOG1303|consen  436 ID  437 (437)
T ss_pred             hC
Confidence            53

>PTZ00206 amino acid transporter; Provisional

Probab=99.97  E-value=3.3e-31  Score=243.16  Aligned_cols=194  Identities=19%  Similarity=0.258  Sum_probs=165.2

Q ss_pred             CChhhhhhhhhhc--------cC-cCCCCc--ccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhHhhcc-
Q 047614           28 NGIPTALSFYSLV--------EL-ISKSTK--KQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNL-   95 (231)
Q Consensus        28 ~~~~~~~g~~~fa--------p~-~~m~~p--~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~-   95 (231)
                      ++.+.++|++.||        |+ +|||||  +||      .+++.+++.+++.+|..+|++||++||++++++++.|+ 
T Consensus       256 ~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~------~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~  329 (467)
T PTZ00206        256 NRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKF------VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYD  329 (467)
T ss_pred             hHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHH------HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCC
Confidence            4578889988776        55 999885  677      89999999999999999999999999999999999999 


Q ss_pred             CCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCC-CCcchhHHHHHHHHHHHHHHHHhhccchhHHHHhhhhH
Q 047614           96 ATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANY-KDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAF  174 (231)
Q Consensus        96 ~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~  174 (231)
                      |.++....++++++.+.++.+||++.+|+|+.+++.+..+. +..++++...+..++..+.++|+.+|+++.+++++||+
T Consensus       330 p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~  409 (467)
T PTZ00206        330 PVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSI  409 (467)
T ss_pred             CCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHH
Confidence            55555567788888889999999999999999888764432 22345666667777778899999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhhh---cccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047614          175 LIVAVSFLLPCVCYLKIF---QVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTV  228 (231)
Q Consensus       175 ~~~~l~fi~P~~~~l~~~---~~~~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l~  228 (231)
                      +++.++|++|+++|++..   +++ ..+++++.+++++++|++..+.|||+|+.+.+
T Consensus       410 ~~~~l~fi~P~lf~l~~~~~~~~~-~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        410 SGGLLGFILPALLFMYSGGFTWQK-VGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHh-hchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            999999999999999842   222 44566789999999999999999999999865

>PLN03074 auxin influx permease; Provisional

Probab=99.97  E-value=2.5e-30  Score=237.17  Aligned_cols=195  Identities=15%  Similarity=0.224  Sum_probs=162.7

Q ss_pred             Chhhhhhhhhhc--------cC-cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchh--hHhhccCC
Q 047614           29 GIPTALSFYSLV--------EL-ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQS--QVTLNLAT   97 (231)
Q Consensus        29 ~~~~~~g~~~fa--------p~-~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~--~il~n~~~   97 (231)
                      .++.+.+++.|+        |+ +|||||+||      ++++..++..++..|+.+|+.||++|||++++  +.+.|+|+
T Consensus       234 ~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F------~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~  307 (473)
T PLN03074        234 LYFTGATNILYTFGGHAVTVEIMHAMWKPQKF------KYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPR  307 (473)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHhccChhcc------cchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCC
Confidence            444555445554        55 999999999      99999999999999999999999999999864  56777887


Q ss_pred             CchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccchhHHHHhhhhHHHH
Q 047614           98 EQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIV  177 (231)
Q Consensus        98 ~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~~  177 (231)
                      +++ .++++++++++++.+||+++.|+.+.+|+..+.+.+.....|..+|+.+++.++++|+.+|+|+++++|+||++++
T Consensus       308 ~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s  386 (473)
T PLN03074        308 SGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVS  386 (473)
T ss_pred             chH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            654 5678888999999999999999999999877654332456789999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhccc--C----------C--chHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHhh
Q 047614          178 AVSFLLPCVCYLKIFQVH--R----------N--WGYELIGILIIMLL-VVFVGVLGTYSSIAQTVKQ  230 (231)
Q Consensus       178 ~l~fi~P~~~~l~~~~~~--~----------~--~~~~~~~~~~i~~~-Gi~~~v~Gt~~si~~l~~~  230 (231)
                      .++|++|+++|+++++++  |          .  ++++.++|++++++ |+++.+.|+|+|+++++++
T Consensus       387 ~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~  454 (473)
T PLN03074        387 FTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQ  454 (473)
T ss_pred             HHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHh
Confidence            999999999999876432  0          1  12346899999985 6666789999999999986

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.96  E-value=6.4e-31  Score=236.22  Aligned_cols=194  Identities=28%  Similarity=0.492  Sum_probs=171.3

Q ss_pred             ccccCChhhhhhhhhhc--------cC-cCCCCcccccccccCc---cchHhHHHHHHHHhhhhhhhhhhhcCCCchhhH
Q 047614           24 LFNLNGIPTALSFYSLV--------EL-ISKSTKKQVIVACSGN---QVLLISFAICTITYPTMAVLGYLIYGQNVQSQV   91 (231)
Q Consensus        24 ~~~~~~~~~~~g~~~fa--------p~-~~m~~p~~~~~~~~~~---~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~i   91 (231)
                      ..++.+++.++|+++|+        |. +|||+|+||      +   ++..+++..++.+|..+|..||++||+++++|+
T Consensus       188 ~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~------~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~i  261 (409)
T PF01490_consen  188 FISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF------KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNI  261 (409)
T ss_pred             cchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc------cccceeeeehhhhhhHHhhhhhhcccceeeeeecchh
Confidence            45667899999988886        45 999999998      6   999999999999999999999999999999999


Q ss_pred             hhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCC----------CCCcchhHHHHHHHHHHHHHHHHhhc
Q 047614           92 TLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPAN----------YKDCKSASILIRMSLLVSTVVLAAVF  161 (231)
Q Consensus        92 l~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~----------~~~~~~~~~~~r~~~~~~~~~iA~~i  161 (231)
                      +.|++++++...++++++.++++.+||++.+|.++.+|+.+.++          .+.++++|..+|+.++..++++|..+
T Consensus       262 l~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~v  341 (409)
T PF01490_consen  262 LLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFV  341 (409)
T ss_pred             hhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhc
Confidence            99999887667788999999999999999999999999987642          12246778999999999999999999


Q ss_pred             cchhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchH-----HHHHHHHHHHHHHHHHHHhHHHHH
Q 047614          162 PSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGY-----ELIGILIIMLLVVFVGVLGTYSSI  224 (231)
Q Consensus       162 P~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~-----~~~~~~~i~~~Gi~~~v~Gt~~si  224 (231)
                      |+++++++++||++++.++|++|+++|++.++++ .++.     +...+++++++|++.++.|+|+++
T Consensus       342 p~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  342 PNFGDIISLVGALFGSFISFILPALLYLKLFKRK-RNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             cchhhhhcccchHHHHhHHHHHHHHHHHHhhccc-ccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            9999999999999999999999999999998765 2111     235678999999999999999886

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-30  Score=221.88  Aligned_cols=209  Identities=21%  Similarity=0.264  Sum_probs=188.0

Q ss_pred             cCcccCCCccccccCChhhhhhhhhhc-------cC--cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614           14 KGVGFHGKGRLFNLNGIPTALSFYSLV-------EL--ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYG   84 (231)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~g~~~fa-------p~--~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG   84 (231)
                      .+++|+......|.+++|.++|+++|+       |.  .+|++|+||      +..+.|+.+...++-..+|..||++||
T Consensus       288 ~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~F------n~Ml~WsHIAAaVfK~~Fg~~~fLTf~  361 (524)
T KOG4303|consen  288 SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQF------NVMLKWSHIAAAVFKVVFGMLGFLTFG  361 (524)
T ss_pred             hhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHh------eeeeehHHHHHHHHHHHHHHheeeeec
Confidence            466777666788999999999998887       77  889999999      889999999999999999999999999


Q ss_pred             CCchhhHhhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCC------------CCcchhHHHHHHHHHH
Q 047614           85 QNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANY------------KDCKSASILIRMSLLV  152 (231)
Q Consensus        85 ~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~------------~~~~~~~~~~r~~~~~  152 (231)
                      +++|+.|++|+|++.+ ..++++..++..+.||||.++.+.+.+|+.+....            ..-+.+.+.+|++++.
T Consensus       362 ~~TqevItnnLp~qsf-k~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvv  440 (524)
T KOG4303|consen  362 ELTQEVITNNLPNQSF-KILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVV  440 (524)
T ss_pred             hhhHHHHhcCCCccch-hhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHH
Confidence            9999999999998765 56888888999999999999999999999765321            1124456789999999


Q ss_pred             HHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 047614          153 STVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQ  230 (231)
Q Consensus       153 ~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l~~~  230 (231)
                      ++.++|+.+|+|..+++++|++.++.++|++|++||++++++. ....++.++..++++|...++.|.|.|..+++++
T Consensus       441 fTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~-L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A  517 (524)
T KOG4303|consen  441 FTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT-LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRA  517 (524)
T ss_pred             HHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh-hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHH
Confidence            9999999999999999999999999999999999999999776 6778999999999999999999999999999986

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.91  E-value=1.3e-23  Score=189.09  Aligned_cols=198  Identities=21%  Similarity=0.355  Sum_probs=170.8

Q ss_pred             ccccCChhhhhhhhhhc--------cC-cCCCCccc--ccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhHh
Q 047614           24 LFNLNGIPTALSFYSLV--------EL-ISKSTKKQ--VIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVT   92 (231)
Q Consensus        24 ~~~~~~~~~~~g~~~fa--------p~-~~m~~p~~--~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~il   92 (231)
                      ..++++...++++++|+        |+ +|||||++  +      .++.+.+...++.+|...|.+||+.|||++++|++
T Consensus       190 ~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i------~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l  263 (411)
T KOG1305|consen  190 LSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKI------QRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLL  263 (411)
T ss_pred             cchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHH------HHHHHHHHHHHHHHHHHHHHhhhheecccchHHHH
Confidence            33346888999988887        88 99999965  7      99999999999999999999999999999999999


Q ss_pred             hccCCCchh------HHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCC----CcchhHHHHHHHHHHHHHHHHhhcc
Q 047614           93 LNLATEQVS------SKVVIYTILAGPIAKYALTVMPIATAIENRLPANYK----DCKSASILIRMSLLVSTVVLAAVFP  162 (231)
Q Consensus        93 ~n~~~~~~~------~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~----~~~~~~~~~r~~~~~~~~~iA~~iP  162 (231)
                      .|+|+....      ....+..++++.+..+|++.+|.|..+++.+.++..    ..+.++..++..++..+.+.|+.+|
T Consensus       264 ~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p  343 (411)
T KOG1305|consen  264 HNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVP  343 (411)
T ss_pred             hcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhc
Confidence            999864322      256778889999999999999999998775544322    3456778999999999999999999


Q ss_pred             chhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 047614          163 SFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQ  230 (231)
Q Consensus       163 ~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l~~~  230 (231)
                      +++++++++||++++.++|++|+.+|++..|+   +.+++...++..++|+..++.|+...+.++..+
T Consensus       344 ~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  344 SIGTIFGFVGATSSTSISFILPALYYLKASKK---KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             cHHHHHHHhhhhhhhhhHHHHHHHhhheeecc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999875   456788889999999999999999998887643

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.09  E-value=1.5e-09  Score=98.60  Aligned_cols=190  Identities=15%  Similarity=0.171  Sum_probs=132.4

Q ss_pred             cccCChhhhhhhhhhc-------c-C-cCCCCccc--ccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhHhh
Q 047614           25 FNLNGIPTALSFYSLV-------E-L-ISKSTKKQ--VIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTL   93 (231)
Q Consensus        25 ~~~~~~~~~~g~~~fa-------p-~-~~m~~p~~--~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~il~   93 (231)
                      .+|..+..+++++.|+       | . +|||++++  .      +|+...+..+..++|..++..+|..+|+++++++++
T Consensus       190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~------~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~  263 (415)
T COG0814         190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAV------RKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILA  263 (415)
T ss_pred             hhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence            5566777888877665       3 3 99997754  7      999999999999999999999999999999999999


Q ss_pred             ccCCCchhHHHHHHHHHHHhhhhhccchhhHH-----------------HHHHhhCCCCCCCc-----chhHHHHHHHHH
Q 047614           94 NLATEQVSSKVVIYTILAGPIAKYALTVMPIA-----------------TAIENRLPANYKDC-----KSASILIRMSLL  151 (231)
Q Consensus        94 n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~-----------------~~l~~~~~~~~~~~-----~~~~~~~r~~~~  151 (231)
                      +.++++..... ......+...+++.+.+|.+                 ++++++  ++.+.+     ...........+
T Consensus       264 ~~~~~~~~l~~-~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~i~~l  340 (415)
T COG0814         264 AKEQNISLLSA-LAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNSKPGRKKTGLLTFLPPLIFAL  340 (415)
T ss_pred             ccCchHHHHHH-HHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccCcccchhhhhhhHHHHHHHHH
Confidence            99765433211 11122233344444444433                 333333  111111     112334445566


Q ss_pred             HHHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047614          152 VSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSI  224 (231)
Q Consensus       152 ~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si  224 (231)
                      ......+...|+.+.+++.+|+..+..+.++.|...+.+....+ ..+.++...++++++|+..+..-.+++.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~-~~~g~~~~~~~v~~~Gi~~~~~~~~~~~  412 (415)
T COG0814         341 LYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALK-VYGGNFLLLLLVLLFGILVILSPFLATF  412 (415)
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee-ecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence            67777888999999999999999999999999999988876443 2222225788888899888887776554

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.27  E-value=5e-06  Score=74.46  Aligned_cols=143  Identities=10%  Similarity=0.063  Sum_probs=99.9

Q ss_pred             cCCC-CcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhH-------------hhccCCCchhHHHHHHH
Q 047614           43 ISKS-TKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQV-------------TLNLATEQVSSKVVIYT  108 (231)
Q Consensus        43 ~~m~-~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~i-------------l~n~~~~~~~~~~~~~~  108 (231)
                      +|++ |+|+.      +|+...+..+++++|+.......-..+.+.-++.             ..+.-.+++...+....
T Consensus       202 ~~~~~~~k~i------~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~  275 (381)
T TIGR00837       202 KYYDGNVKKV------KKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELF  275 (381)
T ss_pred             HHhccCHHHH------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHH
Confidence            7786 55777      9999999999999999886665555443321111             11111122223345555


Q ss_pred             HHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccchh-HHHHhhhhHHHHHHHHhhhhhh
Q 047614          109 ILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQ-SVTSLSGAFLIVAVSFLLPCVC  187 (231)
Q Consensus       109 ~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~-~v~~liGa~~~~~l~fi~P~~~  187 (231)
                      ..+.+..++.-.....++.+++.++++++  +..|............++|...|+.. ..++..| +.+..+.+++|+++
T Consensus       276 ~~~al~tS~~g~~l~~~d~l~~~~~~~~~--~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~  352 (381)
T TIGR00837       276 SNFALASSFLGVTLGLFDYLADLFKFDDS--KKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALL  352 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            66788888887777778887777766432  12244455666677788899999876 8999999 88999999999999


Q ss_pred             hhhhhcc
Q 047614          188 YLKIFQV  194 (231)
Q Consensus       188 ~l~~~~~  194 (231)
                      +++.+|+
T Consensus       353 ~~~~r~~  359 (381)
T TIGR00837       353 AWKARKK  359 (381)
T ss_pred             HHHHHhc
Confidence            9998765

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.26  E-value=2.3e-05  Score=70.89  Aligned_cols=184  Identities=14%  Similarity=0.176  Sum_probs=117.5

Q ss_pred             ccccCChhhhhhhhhhc-------cC--cCCC-CcccccccccCccchHhHHHHHHHHhhhhhh--hh---------hhh
Q 047614           24 LFNLNGIPTALSFYSLV-------EL--ISKS-TKKQVIVACSGNQVLLISFAICTITYPTMAV--LG---------YLI   82 (231)
Q Consensus        24 ~~~~~~~~~~~g~~~fa-------p~--~~m~-~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~--~G---------Y~~   82 (231)
                      ..+|+..+.++++..++       |.  +.++ |++|.      +|+..++..+..++|+..-.  .|         -..
T Consensus       180 ~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~------~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~  253 (394)
T PF03222_consen  180 PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKI------RKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIA  253 (394)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            46677777777765555       65  5554 77888      89999999988888876422  22         112


Q ss_pred             cCCCchh--hHhhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhh
Q 047614           83 YGQNVQS--QVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAV  160 (231)
Q Consensus        83 fG~~~~~--~il~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~  160 (231)
                      -|+++.+  ..+.+..+++....+..+...+.+..||-=...-.+|.+++.++.+++  +..|...-....+...++|..
T Consensus       254 ~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~~--~~~r~~~~~ltf~ppl~~a~~  331 (394)
T PF03222_consen  254 QGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKNN--SSGRLKTWLLTFLPPLIFALL  331 (394)
T ss_pred             cCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--ccchHHHHHHHHHhHHHHHHH
Confidence            2222221  233344344554455666666777777766666677777777665322  223333344455567778888


Q ss_pred             ccc-hhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchH----HHHHHHHHHHHHHHHH
Q 047614          161 FPS-FQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGY----ELIGILIIMLLVVFVG  216 (231)
Q Consensus       161 iP~-~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~----~~~~~~~i~~~Gi~~~  216 (231)
                      .|+ |-..+++.| ...+.+..++|+++.+|.+|+++...+    .+....+++++|++..
T Consensus       332 ~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii  391 (394)
T PF03222_consen  332 FPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII  391 (394)
T ss_pred             CcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence            886 688999999 899999999999999999866422222    2445555555655543

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=97.52  E-value=0.0016  Score=59.19  Aligned_cols=182  Identities=9%  Similarity=0.066  Sum_probs=116.2

Q ss_pred             hhhhhhhhhhc-------cC--cCCC-CcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCc-----h-----h
Q 047614           30 IPTALSFYSLV-------EL--ISKS-TKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNV-----Q-----S   89 (231)
Q Consensus        30 ~~~~~g~~~fa-------p~--~~m~-~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~-----~-----~   89 (231)
                      +..++++..++       |.  +.++ |++|-      +|+...+..+..++|+..=......-+.+.     +     +
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~------~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~  256 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKL------RWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLN  256 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCcCHHHH------HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchH
Confidence            55666654443       55  4444 66777      999999999999988876655554444321     1     1


Q ss_pred             hHhhcc---CCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccc-hh
Q 047614           90 QVTLNL---ATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPS-FQ  165 (231)
Q Consensus        90 ~il~n~---~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-~~  165 (231)
                      +++..+   .++++...+......+.+..||-=.....+|.++..++.+++  +..|...-....+...++|...|+ |.
T Consensus       257 ~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~--~~~r~~~~~l~flppli~a~~~P~~F~  334 (403)
T PRK15132        257 GLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT--VGGRLQTGLITFLPPLAFALFYPRGFV  334 (403)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc--ccCCchhehhhHHHHHHHHHHhHHHHH
Confidence            222222   123333345555555677777665566677777776654432  122444455677788889999997 68


Q ss_pred             HHHHhhhhHHHHHHHHhhhhhhhhhhhccc-CCchH---HHHHHHHHHHHHHHHHHHhH
Q 047614          166 SVTSLSGAFLIVAVSFLLPCVCYLKIFQVH-RNWGY---ELIGILIIMLLVVFVGVLGT  220 (231)
Q Consensus       166 ~v~~liGa~~~~~l~fi~P~~~~l~~~~~~-~~~~~---~~~~~~~i~~~Gi~~~v~Gt  220 (231)
                      ...++.|.. .+.+.+++|+++-++.+|++ +.+..   .+...++++++|++..+.-.
T Consensus       335 ~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~  392 (403)
T PRK15132        335 MALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQF  392 (403)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHH
Confidence            888888864 78899999999999987543 11111   35667778888887665443

>PRK10483 tryptophan permease; Provisional

Probab=97.52  E-value=0.0016  Score=59.19  Aligned_cols=183  Identities=10%  Similarity=0.067  Sum_probs=112.8

Q ss_pred             hhhhhhhhhhc-------cC--cCCC-CcccccccccCccchHhHHHHHHHHhhhhhhhhhhh-----------cCCCch
Q 047614           30 IPTALSFYSLV-------EL--ISKS-TKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLI-----------YGQNVQ   88 (231)
Q Consensus        30 ~~~~~g~~~fa-------p~--~~m~-~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~-----------fG~~~~   88 (231)
                      +..++++..++       |.  +.++ |++|-      +|+...+..+..++|+.-=......           -|++++
T Consensus       194 ~~~alPvl~~SFgfh~iIPsl~~y~~~d~~ki------r~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~  267 (414)
T PRK10483        194 LLMTLPFCLASFGYHGNVPSLMKYYGKDPKTI------VKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID  267 (414)
T ss_pred             HHHHHHHHHhhccCCCcchHHHHHhCcCHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH
Confidence            45556644333       65  5554 56777      9999999999999998733322221           333332


Q ss_pred             h--hHhhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccc-hh
Q 047614           89 S--QVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPS-FQ  165 (231)
Q Consensus        89 ~--~il~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-~~  165 (231)
                      .  +.+.+..+++....+..+...+.+..||-=.....+|.++..++.+++  +..|...-....+...++|...|+ |-
T Consensus       268 ~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~--~~~r~~~~~ltflPPl~~al~~P~~Fl  345 (414)
T PRK10483        268 VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS--AMGRFKTALLTFLPPVVGGLLFPNGFL  345 (414)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--cccceeeehhhHhhHHHHHHHhHHHHH
Confidence            1  111222233343345555556677777765666677888777765532  112333334566778889999998 78


Q ss_pred             HHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchH----HHHHHHHHHHHHHHHHHHhHH
Q 047614          166 SVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGY----ELIGILIIMLLVVFVGVLGTY  221 (231)
Q Consensus       166 ~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~----~~~~~~~i~~~Gi~~~v~Gt~  221 (231)
                      .-+++.|.. +..+.-++|++|-++.+|+.+.+.+    -+....+++++|+...+.-..
T Consensus       346 ~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~~~i~  404 (414)
T PRK10483        346 YAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNALVHIL  404 (414)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHHHHHH
Confidence            899999977 6778889999999999875211111    233346666677766655443

>PRK09664 tryptophan permease TnaB; Provisional

Probab=96.92  E-value=0.027  Score=51.36  Aligned_cols=181  Identities=13%  Similarity=0.114  Sum_probs=109.2

Q ss_pred             hhhhhhhh--hhc-----cC--cCCC-CcccccccccCccchHhHHHHHHHHhhhh-----hhh------hhhhcCCCch
Q 047614           30 IPTALSFY--SLV-----EL--ISKS-TKKQVIVACSGNQVLLISFAICTITYPTM-----AVL------GYLIYGQNVQ   88 (231)
Q Consensus        30 ~~~~~g~~--~fa-----p~--~~m~-~p~~~~~~~~~~~v~~~a~~~~~~~y~~~-----g~~------GY~~fG~~~~   88 (231)
                      +..+++++  +|.     |.  +.++ |++|-      +|+......+..++|+..     |..      .-..-|+++.
T Consensus       195 i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~------~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~  268 (415)
T PRK09664        195 IFMALPVCLASFGFHGNIPSLIICYGKRKDKL------IKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVD  268 (415)
T ss_pred             HHHHHHHHHHhhhCCCcchHHHHHhCccHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCch
Confidence            44555544  333     55  4443 66777      788888888888887432     211      1123343433


Q ss_pred             hhHh---hccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccc-h
Q 047614           89 SQVT---LNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPS-F  164 (231)
Q Consensus        89 ~~il---~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-~  164 (231)
                      +-+.   .+ .++++...+..+...+.+..||-=.....+|.+...++.+++  +..|...-....+...+.|...|+ |
T Consensus       269 ~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~--~~~r~~~~~ltflPPl~~al~~P~gF  345 (415)
T PRK09664        269 SLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS--HGGRFKTVLLTFLPPALLYLIFPNGF  345 (415)
T ss_pred             HHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--cccceeeehhhHhhhHHHHHHhhHHH
Confidence            3111   12 223333445555556677777765566677888777665432  122333334566777888999998 8


Q ss_pred             hHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchH----HHHHHHHHHHHHHHHHHHhH
Q 047614          165 QSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGY----ELIGILIIMLLVVFVGVLGT  220 (231)
Q Consensus       165 ~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~----~~~~~~~i~~~Gi~~~v~Gt  220 (231)
                      -.-++..|.. ++.+.-++|++|-++.+|+...+.+    -+....+.+++|++..+.-.
T Consensus       346 l~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~~~  404 (415)
T PRK09664        346 IYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWF  404 (415)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHHHH
Confidence            8899999996 6788889999999999875211111    25556666777776665544

>PRK10655 potE putrescine transporter; Provisional

Probab=96.33  E-value=0.26  Score=44.93  Aligned_cols=32  Identities=9%  Similarity=-0.070  Sum_probs=27.1

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGY   80 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY   80 (231)
                      +|+|||+ +.      +|++..+...+..+|........
T Consensus       213 ~E~k~P~r~i------PrAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        213 DAVENPERNV------PIAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHhhCccccc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999996 57      99999999999999988765433

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=95.89  E-value=0.13  Score=47.20  Aligned_cols=161  Identities=12%  Similarity=0.076  Sum_probs=100.5

Q ss_pred             ccchHhHHHHHHHHhhhhhhhhhhhcCCCc-----hh--hHhh---c-cCCC--------chhHHHHHHHHHHHhhhhhc
Q 047614           58 NQVLLISFAICTITYPTMAVLGYLIYGQNV-----QS--QVTL---N-LATE--------QVSSKVVIYTILAGPIAKYA  118 (231)
Q Consensus        58 ~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~-----~~--~il~---n-~~~~--------~~~~~~~~~~~~i~~~~syp  118 (231)
                      +|+...+..+..++|+..-...-..-+++-     ++  +++.   | +++.        +....+..+...+++..||-
T Consensus       253 ~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFl  332 (443)
T PRK13629        253 SQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFF  332 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            899999999999998887777766666432     11  1121   1 2221        22233333444455666654


Q ss_pred             cchhhHHHHHHhhCC-----CC--CCCcchhHHHHHHHHHHHHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhh
Q 047614          119 LTVMPIATAIENRLP-----AN--YKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKI  191 (231)
Q Consensus       119 l~~~p~~~~l~~~~~-----~~--~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~  191 (231)
                      =.....+|.++....     .+  +.+.+..+......+.+.++..|..=|++-++++-+|+-....+.|++|...-.|.
T Consensus       333 Gv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kv  412 (443)
T PRK13629        333 GHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKA  412 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHcc
Confidence            444555665544331     11  11234445666777888899999999999999998877778889999998776665


Q ss_pred             hcccCCchHH-HHHHHHHHHHHHHHHHHhHH
Q 047614          192 FQVHRNWGYE-LIGILIIMLLVVFVGVLGTY  221 (231)
Q Consensus       192 ~~~~~~~~~~-~~~~~~i~~~Gi~~~v~Gt~  221 (231)
                      -.   .++.+ +..++++.+.|++....-.|
T Consensus       413 p~---l~~yr~~~~n~fv~~~Gl~~i~~~~~  440 (443)
T PRK13629        413 PS---LAKYRGRLDNVFVTVIGLLTILNIVY  440 (443)
T ss_pred             HH---HHHhCCCchhHHHHHHHHHHHHHHHH
Confidence            32   11122 22478888888877665554

>PRK11021 putative transporter; Provisional

Probab=95.86  E-value=0.45  Score=43.02  Aligned_cols=30  Identities=13%  Similarity=0.260  Sum_probs=26.6

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVL   78 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~   78 (231)
                      +|+|||+ +.      +|+...+...+..+|+.....
T Consensus       201 ~E~k~P~k~i------PrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        201 SEFKNPERDF------PRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             HhccCccccc------cHHHHHHHHHHHHHHHHHHHH
Confidence            9999995 57      999999999999999997754

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=95.82  E-value=0.33  Score=44.86  Aligned_cols=33  Identities=6%  Similarity=-0.047  Sum_probs=27.2

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGYL   81 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~   81 (231)
                      +|+|||+ +.      +|+...+...+..+|....+.-..
T Consensus       218 ~E~knP~r~i------PrAi~~~~~~~~~~y~l~~~~~~~  251 (474)
T TIGR03813       218 KDVDNPDKNY------PIAILIAALGTVLIFVLGTLAIAF  251 (474)
T ss_pred             HhccCcccch------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999995 57      999999999999999876655433

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=95.77  E-value=0.62  Score=42.04  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=30.8

Q ss_pred             cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCC
Q 047614           43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQN   86 (231)
Q Consensus        43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~   86 (231)
                      +|+|| |+.      +|+...+...+.++|......-....+++
T Consensus       212 ~E~k~-k~i------p~ai~~~~~~~~i~y~l~~~~~~~~~~~~  248 (426)
T PF13520_consen  212 EENKN-KTI------PRAIIISIIIVAIIYILFSIALLGALPDD  248 (426)
T ss_dssp             GGSSS-HHH------HHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred             ccccc-hhh------eeecccchhHHHHHHhhhhheeeecccch
Confidence            88888 788      99999999999999999877666655543

...

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=95.64  E-value=0.48  Score=43.36  Aligned_cols=31  Identities=13%  Similarity=0.004  Sum_probs=27.4

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLG   79 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~G   79 (231)
                      +|+|||+ +.      +|+...+...+..+|......-
T Consensus       215 eE~k~P~r~i------Prai~~s~~i~~v~Y~l~~~~~  246 (445)
T PRK10644        215 GVVKNPKRNV------PIATIGGVLIAAVCYVLSSTAI  246 (445)
T ss_pred             HHhhCcccch------hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999996 57      9999999999999999888763

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=95.63  E-value=0.66  Score=42.79  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=29.9

Q ss_pred             cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614           43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYG   84 (231)
Q Consensus        43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG   84 (231)
                      +|.|||++.      +|+...+...+..+|....+..+-..+
T Consensus       219 ~e~k~~k~i------p~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       219 ARAEKRSDV------GKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             hhccCcccc------hHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            778888888      999999999999999998876654433

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10746 putative transport protein YifK; Provisional

Probab=95.55  E-value=0.43  Score=44.01  Aligned_cols=145  Identities=10%  Similarity=0.146  Sum_probs=67.9

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCC-ch---hhHh---hccCCCchhHHHHHHHHHHHhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQN-VQ---SQVT---LNLATEQVSSKVVIYTILAGPI  114 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~-~~---~~il---~n~~~~~~~~~~~~~~~~i~~~  114 (231)
                      +|+|||+ +.      +|+...+.....++|......--.....+ ..   ++..   .+... +....+.+....+..+
T Consensus       224 ~E~knP~k~i------P~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~  296 (461)
T PRK10746        224 GEAKNPQVTL------RSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAAL  296 (461)
T ss_pred             HHhcChhhHH------HHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHH
Confidence            8999995 56      89998888888888877544333222221 11   1111   11111 1111222333333333


Q ss_pred             hhhccchhhHHHHH-----HhhCC----CCCCCcchhH-HHHHHHHHHHHHHHHhhccchhHHHHhhhhHHH--HHHHHh
Q 047614          115 AKYALTVMPIATAI-----ENRLP----ANYKDCKSAS-ILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLI--VAVSFL  182 (231)
Q Consensus       115 ~sypl~~~p~~~~l-----~~~~~----~~~~~~~~~~-~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~--~~l~fi  182 (231)
                      .+.--..+..-+.+     |+.++    +.++.+...+ +.+......+........|+-+.+++.+-+.++  ..+.++
T Consensus       297 s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~  376 (461)
T PRK10746        297 SGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWF  376 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            33222222211222     11122    1122223333 222222222333344456766666666554443  467888


Q ss_pred             hhhhhhhhhhcc
Q 047614          183 LPCVCYLKIFQV  194 (231)
Q Consensus       183 ~P~~~~l~~~~~  194 (231)
                      ++++-|++.+|+
T Consensus       377 ~i~~~~i~~r~~  388 (461)
T PRK10746        377 VILISQLRFRRA  388 (461)
T ss_pred             HHHHHHHHHHHh
Confidence            888888888754

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=95.45  E-value=0.23  Score=45.42  Aligned_cols=31  Identities=13%  Similarity=0.126  Sum_probs=26.6

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLG   79 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~G   79 (231)
                      +|+|||+ +.      +|+...+...+.++|......-
T Consensus       219 ~E~k~P~r~i------P~Ai~~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        219 GEIKNPGKTM------PRALIGSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHhcCccccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999996 56      9999999999999998876543

>TIGR00814 stp serine transporter

Probab=95.37  E-value=0.057  Score=49.05  Aligned_cols=134  Identities=13%  Similarity=0.082  Sum_probs=87.0

Q ss_pred             ccchHhHHHHHHHHhhhhhhhhhhhcCCCchh-----h--Hhh---ccCCCchhHHHHHHHHHHHhhhhhccchhhHHHH
Q 047614           58 NQVLLISFAICTITYPTMAVLGYLIYGQNVQS-----Q--VTL---NLATEQVSSKVVIYTILAGPIAKYALTVMPIATA  127 (231)
Q Consensus        58 ~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~-----~--il~---n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~  127 (231)
                      +|+...+..+..++|...-...-...+++.-.     |  .+.   |-.+++....+..+...+.+..||-=...-.++.
T Consensus       227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~  306 (397)
T TIGR00814       227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREG  306 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            78899999999998888777777766644311     1  122   1112333333334444456666666555666666


Q ss_pred             HHhhC----CC--CCCCcchhHHHHHHHHHHHHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhh
Q 047614          128 IENRL----PA--NYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKI  191 (231)
Q Consensus       128 l~~~~----~~--~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~  191 (231)
                      ++..+    ..  ++.+++..+......+.+.++..|..=|++-++++-+|+-....+.|++|...-.|.
T Consensus       307 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v  376 (397)
T TIGR00814       307 LNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV  376 (397)
T ss_pred             HHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence            65544    11  112234445566677778889999999999999997777777889999998776665

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=94.94  E-value=0.74  Score=42.69  Aligned_cols=158  Identities=10%  Similarity=0.148  Sum_probs=87.7

Q ss_pred             cccCChhhhh--hhhhhc------cC-cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhHhhc
Q 047614           25 FNLNGIPTAL--SFYSLV------EL-ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLN   94 (231)
Q Consensus        25 ~~~~~~~~~~--g~~~fa------p~-~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~il~n   94 (231)
                      .+..++.+++  |.++|+      -. +|+|||+ ++      +++...++.+++.+|+.+-+..+..   -..++++.+
T Consensus       201 ~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktL------P~Ai~isi~lvt~iYil~NvAy~~v---ls~~e~l~S  271 (479)
T KOG1287|consen  201 TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTL------PRAILISIPLVTVIYVLVNVAYFTV---LSPDEILSS  271 (479)
T ss_pred             CchHHHHHHHHHhhhcccCchhhccchHhhcCccccc------hHHHHHhhHHHHHHHHHhHhheeEe---cCHHHhccc
Confidence            3344455555  355665      33 9999995 56      9999999999999999998865544   334444322


Q ss_pred             cC------C---CchhHHHHHHHHHHHhhhhhccchhhHHHHH-----HhhCCC----CCCCc-chhHHHHHHHHHHHHH
Q 047614           95 LA------T---EQVSSKVVIYTILAGPIAKYALTVMPIATAI-----ENRLPA----NYKDC-KSASILIRMSLLVSTV  155 (231)
Q Consensus        95 ~~------~---~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l-----~~~~~~----~~~~~-~~~~~~~r~~~~~~~~  155 (231)
                      -.      +   +++. -+.-++.+++.+.+.=-.++..-+.+     |..+++    .++++ ..+   ..+.+.....
T Consensus       272 ~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~---~allf~~~~~  347 (479)
T KOG1287|consen  272 DAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPR---PALLFSGLLS  347 (479)
T ss_pred             chHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCCh---HHHHHHHHHH
Confidence            10      0   1111 11112223333333222222211111     112221    11111 111   1223333444


Q ss_pred             HHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhccc
Q 047614          156 VLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVH  195 (231)
Q Consensus       156 ~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~  195 (231)
                      .+...+.|++++++.++=.-.....+.+=+++|+|.++++
T Consensus       348 i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~  387 (479)
T KOG1287|consen  348 IVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP  387 (479)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            4555667999999999888888888899999999998765

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=94.92  E-value=0.53  Score=43.51  Aligned_cols=32  Identities=13%  Similarity=0.167  Sum_probs=26.8

Q ss_pred             cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614           43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGY   80 (231)
Q Consensus        43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY   80 (231)
                      +|+||+++.      +|+...+..++..+|+.......
T Consensus       223 ~E~k~~r~i------Prai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       223 GRAKNKSDV------GKATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             HHHhccccc------hHHHHHHHHHHHHHHHHHHHHHH
Confidence            889896667      99999999999999988876533

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=94.41  E-value=1.1  Score=40.91  Aligned_cols=32  Identities=13%  Similarity=0.052  Sum_probs=28.0

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGY   80 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY   80 (231)
                      +|+|||+ +.      +|+...+...+.++|+.....-.
T Consensus       211 ~E~knP~r~i------PrAi~~~~~iv~ilYil~~~~~~  243 (435)
T PRK10435        211 GMVKNPKRTV------PLATMLGTGLAGIIYIAATQVIS  243 (435)
T ss_pred             HHhhCccccc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999995 68      99999999999999998877544

>PRK10249 phenylalanine transporter; Provisional

Probab=94.34  E-value=0.94  Score=41.72  Aligned_cols=31  Identities=6%  Similarity=-0.034  Sum_probs=25.2

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLG   79 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~G   79 (231)
                      +|+|||+| .      +|+...+......+|......-
T Consensus       233 ~E~~~P~k~i------Prai~~~~~~~~~~y~~~~~~~  264 (458)
T PRK10249        233 AEARDPEKSI------PKAVNQVVYRILLFYIGSLVVL  264 (458)
T ss_pred             HHhcCHhhHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999965 6      9999999999999997754443

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=94.01  E-value=0.98  Score=41.45  Aligned_cols=30  Identities=10%  Similarity=0.024  Sum_probs=25.5

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhh
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVL   78 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~   78 (231)
                      +|+|||+| .      +|+...+.....++|+...+.
T Consensus       205 ~E~knP~r~i------Prai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        205 AESDTPEKHI------VRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             HHhcChhhhH------HHHHHHHHHHHHHHHHHHHHH
Confidence            99999965 6      899999999999999886555

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=93.72  E-value=4.5  Score=37.32  Aligned_cols=36  Identities=11%  Similarity=0.090  Sum_probs=24.4

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGYLIYG   84 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG   84 (231)
                      +|+|||+ +.      +|+...+..+...++....+.-+...|
T Consensus       241 ~E~knP~r~i------P~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       241 EEIENPEVVG------PRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             HhcCChhhhc------CHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999995 46      999999988776655444433333334

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=93.25  E-value=1.7  Score=40.05  Aligned_cols=32  Identities=3%  Similarity=-0.059  Sum_probs=24.4

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGY   80 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY   80 (231)
                      +|+|||+| .      +|+...+.......|......-+
T Consensus       235 ~E~knP~r~i------Prai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        235 AETKDPEKSL------PRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             HHhcCHhhHH------HHHHHHHHHHHHHHHHHHHHHHe
Confidence            99999965 6      88888777777888876665543

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=93.24  E-value=3.6  Score=37.89  Aligned_cols=29  Identities=7%  Similarity=0.008  Sum_probs=25.4

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAV   77 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~   77 (231)
                      +|+|||+ +.      +|+...+...+..+|.....
T Consensus       221 ~E~knP~r~i------Prai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       221 GEAANPRKSI------PRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HhhcChhhHH------HHHHHHHHHHHHHHHHHHHH
Confidence            9999995 57      99999999999999998754

>TIGR00909 2A0306 amino acid transporter

Probab=93.24  E-value=1.9  Score=39.03  Aligned_cols=32  Identities=13%  Similarity=0.280  Sum_probs=27.4

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGY   80 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY   80 (231)
                      +|+|||+ +.      +|+...+.....++|........
T Consensus       219 ~E~~~p~r~i------p~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       219 EEVKNPERDI------PKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HhccCccccc------cHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999995 57      99999999999999998876544

>PRK10836 lysine transporter; Provisional

Probab=92.95  E-value=4.9  Score=37.26  Aligned_cols=34  Identities=12%  Similarity=0.048  Sum_probs=27.6

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhhhh
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGYLI   82 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~   82 (231)
                      +|+|||+| .      +|+...+...+..+|......-...
T Consensus       229 ~E~knP~r~i------PrAi~~~~~~v~~~Yvl~~~~~~~~  263 (489)
T PRK10836        229 GESEDPAKNI------PRAVRQVFWRILLFYVFAILIISLI  263 (489)
T ss_pred             HHhcCHHHHH------HHHHHHHHHHHHHHHHHHHHHHhee
Confidence            99999965 6      9999999999999999876544333

>PRK10238 aromatic amino acid transporter; Provisional

Probab=92.72  E-value=4.2  Score=37.43  Aligned_cols=27  Identities=11%  Similarity=-0.017  Sum_probs=21.6

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhh
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTM   75 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~   75 (231)
                      +|+|||+| .      +|+...+.....+.|...
T Consensus       224 eE~knP~r~i------PrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        224 AEADNPEQSI------PKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HhhcChhhHH------HHHHHHHHHHHHHHHHHH
Confidence            99999965 6      899988887777777654

>PRK11387 S-methylmethionine transporter; Provisional

Probab=92.70  E-value=2.8  Score=38.64  Aligned_cols=31  Identities=6%  Similarity=0.019  Sum_probs=26.2

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLG   79 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~G   79 (231)
                      +|+|||+| .      +|+...+......+|+......
T Consensus       230 ~E~knP~r~i------PrAi~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        230 GETENPAKVI------PVAIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHhcChhhHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999965 6      9999999999999998876543

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=92.31  E-value=4.9  Score=37.60  Aligned_cols=28  Identities=0%  Similarity=-0.123  Sum_probs=23.6

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMA   76 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g   76 (231)
                      +|+|||+ ++      +|+...+...+..+|....
T Consensus       218 ~E~knP~r~~------PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       218 NELENPGRDY------PLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHccCCcccc------cHHHHHHHHHHHHHHHHHH
Confidence            9999995 58      9999999998888887543

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR00908 2A0305 ethanolamine permease

Probab=92.00  E-value=4.9  Score=36.59  Aligned_cols=29  Identities=10%  Similarity=0.020  Sum_probs=24.2

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAV   77 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~   77 (231)
                      +|+|||+ +.      +|+...+...+..+|+..-.
T Consensus       215 eE~k~P~r~i------prai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       215 EETKNPKRDI------PRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHhcCccccc------CHHHHHHHHHHHHHHHHHHH
Confidence            8999995 56      99999999988888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00930 2a30 K-Cl cotransporter

Probab=91.94  E-value=4.9  Score=40.74  Aligned_cols=30  Identities=17%  Similarity=0.204  Sum_probs=26.7

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhh
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVL   78 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~   78 (231)
                      .|+|||+| .      +++...+..+++++|+.+.+.
T Consensus       304 gElKnP~r~I------Pratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       304 GDLKDPQKAI------PKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HhccChhhhh------HHHHHHHHHHHHHHHHHHHHH
Confidence            89999965 6      999999999999999999753

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=91.90  E-value=2.6  Score=39.99  Aligned_cols=31  Identities=13%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLG   79 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~G   79 (231)
                      +|.|||+| .      +++...+..+++.+|+.+...-
T Consensus       255 eE~knP~r~i------P~aii~sl~i~~vlY~lv~~~l  286 (557)
T TIGR00906       255 EEVKNPQRAI------PIGIVTSLLVCFVAYFLMSAAL  286 (557)
T ss_pred             HhccCccccc------cHHHHHHHHHHHHHHHHHHHHH
Confidence            99999965 7      9999999999999999887653

>TIGR00911 2A0308 L-type amino acid transporter

Probab=91.41  E-value=3.2  Score=38.56  Aligned_cols=32  Identities=16%  Similarity=0.212  Sum_probs=27.3

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGY   80 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY   80 (231)
                      +|+|||+ +.      +|+...+...+..+|+.....-.
T Consensus       259 ~E~knP~r~i------PrAi~~s~~~v~~~Y~l~~~a~~  291 (501)
T TIGR00911       259 EEVKNPYRTL------PIAIIISMPIVTFIYVLTNIAYF  291 (501)
T ss_pred             HHhcCchhhh------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999995 57      99999999999999999865443

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=90.99  E-value=4.9  Score=36.74  Aligned_cols=32  Identities=6%  Similarity=-0.073  Sum_probs=25.2

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGY   80 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY   80 (231)
                      +|+|||+ +.      +|+...+......+|+.......
T Consensus       225 ~E~k~P~r~i------PrAi~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       225 AESSNPIKSI------TRATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             HhhcChhhHH------HHHHHHHHHHHHHHHHHHHHHHe
Confidence            9999996 57      99998888888888887655433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=90.65  E-value=4.7  Score=37.46  Aligned_cols=30  Identities=13%  Similarity=0.216  Sum_probs=25.6

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhh
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVL   78 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~   78 (231)
                      +|+|||+ +.      +|+...+...+..+|....+.
T Consensus       235 ~E~~~p~~~~------p~ai~~~~~~~~~~y~l~~~~  265 (496)
T PRK15238        235 DKTENPEKNF------PKGIIIAAIVISIGYSLAIFL  265 (496)
T ss_pred             HhccCCCccc------cHHHHHHHHHHHHHHHHHHHH
Confidence            9999996 57      999999999999999976443

>PRK10580 proY putative proline-specific permease; Provisional

Probab=90.22  E-value=11  Score=34.55  Aligned_cols=30  Identities=3%  Similarity=-0.054  Sum_probs=23.2

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhh
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVL   78 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~   78 (231)
                      +|+|||+| .      +|+...+......+|......
T Consensus       223 ~E~knP~k~i------PrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        223 GEAKDPEKSI------PRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHhcChhhHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            99999976 6      888888877777777766443

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=89.93  E-value=11  Score=34.16  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=32.2

Q ss_pred             cCCCCc-ccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCC
Q 047614           43 ISKSTK-KQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ   85 (231)
Q Consensus        43 ~~m~~p-~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~   85 (231)
                      +|+||| ++.      +|+...+...+..+|......-....++
T Consensus       225 ~E~knp~r~i------p~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         225 EEVKNPKRTI------PRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHhcCccccc------cHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            999999 566      9999999999999999998877777665

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=89.42  E-value=3.1  Score=36.73  Aligned_cols=137  Identities=12%  Similarity=0.175  Sum_probs=79.4

Q ss_pred             cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhh-------HhhccCCCchhHHH---HHHHHHHH
Q 047614           43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQ-------VTLNLATEQVSSKV---VIYTILAG  112 (231)
Q Consensus        43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~-------il~n~~~~~~~~~~---~~~~~~i~  112 (231)
                      .++|||++.      +|+...+......+|...-...-..+|.+..++       ..+...-.++..++   ....-...
T Consensus       203 ~~~~~~~~~------~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~  276 (359)
T TIGR00912       203 PLLSKKKKI------KKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFI  276 (359)
T ss_pred             HHhCChhhh------HHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence            778899998      999999999999999999888888888654332       11222111222221   11223356


Q ss_pred             hhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccchhHHHHhhh---hHHHHHHHHhhhhhhhh
Q 047614          113 PIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSG---AFLIVAVSFLLPCVCYL  189 (231)
Q Consensus       113 ~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liG---a~~~~~l~fi~P~~~~l  189 (231)
                      ...+..+..+.....+++.++.++.  +.  ...-...  ....++ ..||-..-.....   ...+....+++|.++.+
T Consensus       277 ~f~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~  349 (359)
T TIGR00912       277 IFVKIAFYLYIAVKGLSKLFKKRKY--SI--LILPVLM--VIFSIS-FFPDSSNQLFDYLEFLPIIAIVFFLLLPLILFI  349 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCc--ch--hHHHHHH--HHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666667777777788887776532  11  1111111  122222 3455222222222   23345677789998877


Q ss_pred             hhh
Q 047614          190 KIF  192 (231)
Q Consensus       190 ~~~  192 (231)
                      ...
T Consensus       350 i~~  352 (359)
T TIGR00912       350 IVK  352 (359)
T ss_pred             HHH
Confidence            765

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PRK15049 L-asparagine permease; Provisional

Probab=88.41  E-value=14  Score=34.58  Aligned_cols=34  Identities=12%  Similarity=-0.002  Sum_probs=26.7

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhhhh
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGYLI   82 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~   82 (231)
                      +|+|||+| .      +|+...+.....++|+.....-...
T Consensus       244 eE~knP~r~i------PrAi~~~~~~i~~~yi~~~~~~~~~  278 (499)
T PRK15049        244 GECKDPQTMV------PKAINSVIWRIGLFYVGSVVLLVML  278 (499)
T ss_pred             HHhcChhhHH------HHHHHHHHHHHHHHHHHHHHHHhee
Confidence            99999975 6      9999998888888888766554433

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=82.93  E-value=37  Score=31.45  Aligned_cols=127  Identities=15%  Similarity=0.133  Sum_probs=73.7

Q ss_pred             cCCCCcc--cccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCc-hhhHhhccCCCchhHHHHHHHHHHHhhhhhcc
Q 047614           43 ISKSTKK--QVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNV-QSQVTLNLATEQVSSKVVIYTILAGPIAKYAL  119 (231)
Q Consensus        43 ~~m~~p~--~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~-~~~il~n~~~~~~~~~~~~~~~~i~~~~sypl  119 (231)
                      +-+|+|+  |.      -.....+......+-...|...-.+=|+.- ..+....+..   ....+.+...++.+.+=..
T Consensus       218 Ry~~~~t~~~~------~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~  288 (442)
T COG1457         218 RYAPSPTPSKA------FLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNAN  288 (442)
T ss_pred             hhcCCCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcH
Confidence            5566666  65      456677777777778888888888888876 3344444422   2334445555666666666


Q ss_pred             chhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHh----hccchhHHHHhhhhHHHHHHHHhh
Q 047614          120 TVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAA----VFPSFQSVTSLSGAFLIVAVSFLL  183 (231)
Q Consensus       120 ~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~----~iP~~~~v~~liGa~~~~~l~fi~  183 (231)
                      ++++.--++.+..++-   +|..+.......  ..+++|.    +..+++.++.++|+.........+
T Consensus       289 nlYsa~ls~~~i~~~l---~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~i  351 (442)
T COG1457         289 NLYSAGLSFANIIPKL---SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMI  351 (442)
T ss_pred             HHHHHHHHHHHhhhhh---hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655555544432   223332222221  2233333    456788888888888855555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	97.22
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	96.69
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	96.64

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=97.22  E-value=0.0018  Score=57.33  Aligned_cols=54  Identities=9%  Similarity=0.003  Sum_probs=38.2

Q ss_pred             cCChhhhhhhhhhc--------cC-cCCCCc-ccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCC
Q 047614           27 LNGIPTALSFYSLV--------EL-ISKSTK-KQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQN   86 (231)
Q Consensus        27 ~~~~~~~~g~~~fa--------p~-~~m~~p-~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~   86 (231)
                      +.++..++....|+        .. +|+||| ++.      +|+...+.....++|+..........+.+
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~i------p~a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNV------PIATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccc------cHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            44555555543343        23 899999 567      99999999999999999988777666643

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=96.69  E-value=0.074  Score=47.70  Aligned_cols=38  Identities=8%  Similarity=-0.039  Sum_probs=32.3

Q ss_pred             cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCC
Q 047614           43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQN   86 (231)
Q Consensus        43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~   86 (231)
                      +|+|||+ +.      +|+...+...+.++|+...+.-....+++
T Consensus       225 ~E~k~P~k~i------p~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          225 NEMSNPGRDY------PLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             SSSSCCTTTH------HHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HhccCcccch------hHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            9999995 47      99999999999999999888777666643

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=96.64  E-value=0.023  Score=50.14  Aligned_cols=36  Identities=19%  Similarity=0.187  Sum_probs=30.1

Q ss_pred             cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614           43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGYLIYG   84 (231)
Q Consensus        43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG   84 (231)
                      +|+|||+| .      +|+...+...+.++|...........+
T Consensus       212 ~e~k~P~r~i------p~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          212 EHIENPKKNV------PRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             GGBSSHHHHH------HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHccCcccch------hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999965 7      999999999999999988776555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00