Citrus Sinensis ID: 047620

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAKPMQLG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEccccccccEEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
mgeelsglnvkdLQNLENQLEMSLkgvrlkkdQVLTDEIKELNRKGNLLHQENLELHKKVNLINQENRELKKKVYegrnvnaansisqptytisngydmhpplhlqlsqpqpqknetpakpmqlg
Flexible Loop (DISEMBL)
mgeelsglnvkdlqNLENQLemslkgvrlkkdQVLTDEIKElnrkgnllhqenlelhkkvnlinQENRELKKKvyegrnvnaansisqptYTISNGYDMHPPLHLqlsqpqpqknetpakpmqlg
Low Complexity Region (SEG)
MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMhpplhlqlsqpqpqKNETPAKPMQLG
Disordered region (IsUnstruct)
**********************************L***********NLLHQENLELHKKVNLI**************************************************************
Disordered Region (DISOPRED)
MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRK*N*LHQENLELH*********************************************LH*****************MQL*
Disordered Region (DISEMBL)
MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQ****************
Disordered Region (DISPRO)
****LSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQENRELKKKVYEGR***********TYTISNGYDMHPPLHLQLSQ****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQExxxxxxxxxxxxxxxxxxxxxVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAKPMQLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.952	0.495	0.593	5e-31
Q6EP49	240	MADS-box transcription fa	no	no	0.968	0.504	0.549	4e-27
Q38840	227	Agamous-like MADS-box pro	no	no	0.912	0.502	0.508	1e-24
Q9SI38	234	MADS-box transcription fa	no	no	0.952	0.508	0.52	3e-24
Q9SZJ6	228	Agamous-like MADS-box pro	no	no	0.928	0.508	0.454	2e-22
Q6Z6W2	241	MADS-box transcription fa	no	no	0.944	0.489	0.45	2e-20
Q84NC5	227	MADS-box transcription fa	no	no	0.896	0.493	0.431	2e-15
Q6VAM4	159	MADS-box transcription fa	no	no	0.36	0.283	0.644	1e-10
Q38876	242	Agamous-like MADS-box pro	no	no	0.744	0.384	0.36	6e-08
Q9XJ66	228	MADS-box transcription fa	no	no	0.504	0.276	0.460	5e-07

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/128 (59%), Positives = 97/128 (75%), Gaps = 9/128 (7%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGEELSGL+V+ LQNLENQLE+SL+GVR+KKDQ+L +EI+ LNR+GNL+HQENL+LHKKV
Sbjct: 111 MGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKV 170

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPP----LHLQLSQPQPQKNE 116
           NL++Q+N EL +KV E   V  AN  S     ++NG DM       +HLQLSQPQ   +E
Sbjct: 171 NLMHQQNMELHEKVSEVEGVKIANKNS----LLTNGLDMRDTSNEHVHLQLSQPQ-HDHE 225

Query: 117 TPAKPMQL 124
           T +K +QL
Sbjct: 226 THSKAIQL 233

Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 83/122 (68%), Gaps = 1/122 (0%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGE+LSGLNVK+LQ+LENQLE+SL+ VR KKD VL DEI ELNRKG+L+HQEN+EL+KK+
Sbjct: 111 MGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKI 170

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQ-PQPQKNETPA 119
           +LI QEN EL KK+YE    +  N  S   Y  +     + P+ L LS  PQ    E   
Sbjct: 171 SLIRQENAELYKKIYETEGPSEVNRDSPTPYNFAVIEKTNVPVQLGLSTLPQHSDAEQST 230

Query: 120 KP 121
            P
Sbjct: 231 AP 232

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38840|AGL17_ARATH Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 81/118 (68%), Gaps = 4/118 (3%)

Query: 2   GEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61
           G EL+GL+VK+LQN+E+QLEMSL+G+R+K++Q+LT+EIKEL RK NL+H ENLEL +KV 
Sbjct: 112 GVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQ 171

Query: 62  LINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPA 119
            I+QEN EL KK Y   N N           +   Y+ H  + LQLSQP+    +T +
Sbjct: 172 RIHQENVELYKKAYGTSNTNGLG----HHELVDAVYESHAQVRLQLSQPEQSHYKTSS 225

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI38|ANR1_ARATH MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 85/125 (68%), Gaps = 6/125 (4%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           +GEELSG+N  DLQNLE+QL  SLKGVRLKKDQ++T+EI+ELNRKG ++ +EN EL   V
Sbjct: 112 VGEELSGMNANDLQNLEDQLVTSLKGVRLKKDQLMTNEIRELNRKGQIIQKENHELQNIV 171

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAK 120
           +++ +EN +L+KKV+   N    NS   P   ISNG   + P  LQL Q QP   E   K
Sbjct: 172 DIMRKENIKLQKKVHGRTNAIEGNSSVDP---ISNGTTTYAPPQLQLIQLQPAPRE---K 225

Query: 121 PMQLG 125
            ++LG
Sbjct: 226 SIRLG 230

Probable transcription factor. Required for root plasticity in response to nitrate, NO(3)(-). Promotes lateral root growth in a NRT1.1-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 85/121 (70%), Gaps = 5/121 (4%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGE+L+GL+V +L +LENQ+E+SL+G+R++K+Q+LT EI+EL++K NL+HQENL+L +KV
Sbjct: 111 MGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKV 170

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAK 120
             I+QEN EL KK Y    +   N  +     +++  + H  + LQLSQP+    +TP +
Sbjct: 171 QRIHQENVELYKKAY----MANTNGFTHREVAVADD-ESHTQIRLQLSQPEHSDYDTPPR 225

Query: 121 P 121
            
Sbjct: 226 A 226

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z6W2|MAD57_ORYSJ MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 80/120 (66%), Gaps = 2/120 (1%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGEELSGL V+DLQ LEN+LE+SL+ +R++KD +L  EI+EL+ KG+L+HQEN+EL + +
Sbjct: 110 MGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSL 169

Query: 61  NLINQENREL--KKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETP 118
           N+++Q+  EL  K +  E R    AN  S   Y+     + + P  L+LSQ Q ++ E  
Sbjct: 170 NVMSQQKLELYNKLQACEQRGATDANESSSTPYSFRIIQNANMPPSLELSQSQQREGECS 229

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84NC5|MAD25_ORYSJ MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 4/116 (3%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           +GEE+S   V+DLQ L+NQ+EMSL  +R KKDQ+L +EI +LN KG+L+ +EN EL KK 
Sbjct: 111 LGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKF 170

Query: 61  NLINQENRELKKKVYEGRNVNA---ANSISQPTYTISNGYDMHPPLHLQLSQPQPQ 113
           N+ +Q N EL KK+  G + ++     S   P  + S   D    + L+LSQ + +
Sbjct: 171 NIAHQRNIELHKKLNSGESTSSEQVTRSSKDPGES-STPRDSRVCIDLELSQKEVE 225

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 42/45 (93%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRK 45
           +G++LSGL+V+DLQNLE++LEMSLK +RL+KD V+ D+I+EL+RK
Sbjct: 111 LGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38876|AGL8_ARATH Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 7/100 (7%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGE+L  L++K+LQ+LE+QL+ ++K +R +K+Q + + I  L +K   L   N  L KK+
Sbjct: 113 MGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKI 172

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQ--PTYTISNGYD 98
                + RE K    EG+ V  +NS S   P Y +++  D
Sbjct: 173 -----KEREKKTGQQEGQLVQCSNSSSVLLPQYCVTSSRD 207

Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1 and CAULIFLOWER. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 and CAULIFLOWER in the up-regulation of LEAFY. Is also required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique. Probably not required for fruit elongation but instead is required to prevent ectopic activity of IND.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XJ66|MAD22_ORYSJ MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query: 2   GEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61
           GEEL GL++ +LQ LE  LE  L  V L KDQ   ++I EL RK + L +EN++L  +V+
Sbjct: 112 GEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVS 171

Query: 62  LIN 64
            I+
Sbjct: 172 QIS 174

Probable transcription factor. May be required for spikelet (rice flower) development.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
255554585	266	mads box protein, putative [Ricinus comm	1.0	0.469	0.744	7e-47
224061015	236	predicted protein [Populus trichocarpa]	0.992	0.525	0.685	2e-42
224061013	238	predicted protein [Populus trichocarpa]	1.0	0.525	0.679	5e-42
356554816	239	PREDICTED: MADS-box transcription factor	1.0	0.523	0.64	4e-40
225470986	233	PREDICTED: MADS-box transcription factor	0.984	0.527	0.656	5e-40
296088056	237	unnamed protein product [Vitis vinifera]	0.984	0.518	0.656	6e-40
357446035	206	MADS-box protein AGL16-II [Medicago trun	1.0	0.606	0.648	7e-40
34452085	238	MADS-box protein 14 [Petunia x hybrida]	1.0	0.525	0.632	2e-38
359492513	320	PREDICTED: MADS-box transcription factor	0.992	0.387	0.682	4e-38
224084526	244	predicted protein [Populus trichocarpa]	1.0	0.512	0.68	4e-38

>gi|255554585|ref|XP_002518331.1| mads box protein, putative [Ricinus communis] gi|223542551|gb|EEF44091.1| mads box protein, putative [Ricinus communis]

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 93/125 (74%), Positives = 107/125 (85%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGEELSGL+ KDLQNLENQLEMSLKGVR+KKDQ+LTDEI+ELNRKGNL ++ENL+LHKKV
Sbjct: 138 MGEELSGLSAKDLQNLENQLEMSLKGVRMKKDQILTDEIRELNRKGNLTYEENLKLHKKV 197

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAK 120
            LI QEN EL+KKV E R+V  AN  S P YT+SNGYD+H P+HLQLSQPQP  N+ P K
Sbjct: 198 ELIYQENVELRKKVNEERDVREANKSSHPPYTLSNGYDIHAPIHLQLSQPQPHSNQAPPK 257

Query: 121 PMQLG 125
           PM+LG
Sbjct: 258 PMKLG 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061015|ref|XP_002300317.1| predicted protein [Populus trichocarpa] gi|222847575|gb|EEE85122.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 108/127 (85%), Gaps = 3/127 (2%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGEELSGL++KDL+NLENQLE S+KGVR+KK+Q+LTDEIKE+++KGNL++QENLELHKKV
Sbjct: 111 MGEELSGLSIKDLENLENQLEKSMKGVRIKKEQILTDEIKEMSQKGNLIYQENLELHKKV 170

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQ--KNETP 118
           +LI QEN EL +KVY  RNV+ AN  S+P YT+ NGYD+H P+ LQLSQPQPQ   +E P
Sbjct: 171 DLIGQENAEL-RKVYGERNVDEANRASRPPYTVENGYDLHAPIRLQLSQPQPQPHNSEAP 229

Query: 119 AKPMQLG 125
           A  M+LG
Sbjct: 230 ASSMKLG 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061013|ref|XP_002300316.1| predicted protein [Populus trichocarpa] gi|222847574|gb|EEE85121.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 108/128 (84%), Gaps = 3/128 (2%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGEELSGL++KDL+NLENQLE S+KGVR+KK+Q+LTDEIKE+++KGNL++QENLELHKKV
Sbjct: 111 MGEELSGLSIKDLENLENQLEKSMKGVRIKKEQILTDEIKEMSQKGNLIYQENLELHKKV 170

Query: 61  NLINQENRELKKK-VYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQ--KNET 117
           +LI QEN EL+K  VY  RNV+ AN  S+P YT+ NGYD+H P+ LQLSQPQPQ   +E 
Sbjct: 171 DLIGQENAELRKVLVYGERNVDEANRASRPPYTVENGYDLHAPIRLQLSQPQPQPHNSEA 230

Query: 118 PAKPMQLG 125
           PA  M+LG
Sbjct: 231 PASSMKLG 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554816|ref|XP_003545738.1| PREDICTED: MADS-box transcription factor 27-like [Glycine max]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/125 (64%), Positives = 103/125 (82%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGEEL GL +K+LQ+LENQLEMSLKGVR+KKDQ+LT+EI+EL +KGNL+HQEN+EL++K+
Sbjct: 111 MGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKGNLIHQENVELYQKM 170

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAK 120
             I +EN EL+KKVYE R+ N  N  S P+Y + NGYD+H P+ LQLSQPQPQ +E  AK
Sbjct: 171 EQIQKENAELQKKVYEARSTNEENVASNPSYKVRNGYDLHAPISLQLSQPQPQYSEPSAK 230

Query: 121 PMQLG 125
            ++LG
Sbjct: 231 AIKLG 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470986|ref|XP_002265503.1| PREDICTED: MADS-box transcription factor 27 [Vitis vinifera]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 106/125 (84%), Gaps = 2/125 (1%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           +GEELSGL +KDLQNLENQLEMSLKGVR+KK+++LTDEI+ELN+KG+L+HQEN++L+KKV
Sbjct: 111 LGEELSGLGIKDLQNLENQLEMSLKGVRMKKEKILTDEIRELNQKGSLIHQENIDLYKKV 170

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAK 120
           +LI QEN EL+KKVY   N+N +N  SQ ++  SNG+D+H P++LQLS  QP  NETP K
Sbjct: 171 DLIRQENMELQKKVYRAVNLNESNRSSQVSHGFSNGFDLHVPINLQLS--QPHNNETPEK 228

Query: 121 PMQLG 125
            M+LG
Sbjct: 229 AMELG 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088056|emb|CBI35415.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 106/125 (84%), Gaps = 2/125 (1%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           +GEELSGL +KDLQNLENQLEMSLKGVR+KK+++LTDEI+ELN+KG+L+HQEN++L+KKV
Sbjct: 111 LGEELSGLGIKDLQNLENQLEMSLKGVRMKKEKILTDEIRELNQKGSLIHQENIDLYKKV 170

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAK 120
           +LI QEN EL+KKVY   N+N +N  SQ ++  SNG+D+H P++LQLS  QP  NETP K
Sbjct: 171 DLIRQENMELQKKVYRAVNLNESNRSSQVSHGFSNGFDLHVPINLQLS--QPHNNETPEK 228

Query: 121 PMQLG 125
            M+LG
Sbjct: 229 AMELG 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446035|ref|XP_003593295.1| MADS-box protein AGL16-II [Medicago truncatula] gi|355482343|gb|AES63546.1| MADS-box protein AGL16-II [Medicago truncatula]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 104/125 (83%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGE LSGL +K+LQNLENQLE+SLKGVR+KKD +LT+EIKEL++KGNL+HQEN+ELHKK+
Sbjct: 39  MGEGLSGLGIKELQNLENQLEISLKGVRMKKDHILTNEIKELHQKGNLVHQENVELHKKM 98

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAK 120
           +L+ +EN EL KKVYE R+ N  N+ +  + TI NG+D+H P+ LQLSQPQPQ +E  AK
Sbjct: 99  DLVQKENAELLKKVYEARSTNEENAATNLSRTIRNGFDLHAPISLQLSQPQPQYSEPAAK 158

Query: 121 PMQLG 125
            M+LG
Sbjct: 159 VMKLG 163

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34452085|gb|AAQ72499.1| MADS-box protein 14 [Petunia x hybrida]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 99/125 (79%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           +GE+LSGL +KDL +LEN+LEMSLKGVR +K+Q+LTDEIKE+ RKGNL+HQEN+EL+KKV
Sbjct: 110 LGEKLSGLGIKDLTHLENKLEMSLKGVRKQKEQILTDEIKEITRKGNLIHQENIELYKKV 169

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAK 120
           NLI QEN +L+KKVYE    +  N   Q T+ ISNGYD+H P++LQL  PQ QKN+T   
Sbjct: 170 NLIRQENTDLQKKVYEKGCGSEPNEGVQATFAISNGYDLHAPIYLQLRPPQTQKNQTSTS 229

Query: 121 PMQLG 125
            MQ G
Sbjct: 230 VMQFG 234

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492513|ref|XP_002283694.2| PREDICTED: MADS-box transcription factor 27 [Vitis vinifera]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 100/126 (79%), Gaps = 2/126 (1%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGEELSGL+VKDLQNLENQLEMSL+GVR+KKDQ+L DEI+ELN+KGNLLH EN+EL+KKV
Sbjct: 111 MGEELSGLSVKDLQNLENQLEMSLRGVRMKKDQILIDEIQELNQKGNLLHNENVELYKKV 170

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNE-TPA 119
           NLI QEN EL KKVY  R VN  N  +  T  +S G D+H P+HLQL QPQ Q  E TPA
Sbjct: 171 NLIRQENMELYKKVYGTREVNGTNR-NAFTNGLSIGEDLHVPIHLQLCQPQQQNYETTPA 229

Query: 120 KPMQLG 125
           +  +LG
Sbjct: 230 RATKLG 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084526|ref|XP_002307325.1| predicted protein [Populus trichocarpa] gi|222856774|gb|EEE94321.1| predicted protein [Populus trichocarpa]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 97/125 (77%)

Query: 1   MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
           MGEELSGL+VKDLQNLENQLEMSL+GVR+KKDQ L DEI ELNRKGNL+HQEN+EL+KK 
Sbjct: 111 MGEELSGLSVKDLQNLENQLEMSLRGVRMKKDQNLMDEILELNRKGNLIHQENMELYKKA 170

Query: 61  NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDMHPPLHLQLSQPQPQKNETPAK 120
           NLI  EN+EL KKVY  R VN AN  S  T  +  G + H P+HLQLSQPQ Q  +TPA 
Sbjct: 171 NLICHENQELYKKVYGTREVNGANRNSLLTNGLGMGEESHVPVHLQLSQPQQQNYDTPAS 230

Query: 121 PMQLG 125
             +LG
Sbjct: 231 ATKLG 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2082618	240	AGL16 "AGAMOUS-like 16" [Arabi	0.76	0.395	0.636	3.5e-27
TAIR|locus:2066050	227	AGL17 "AGAMOUS-like 17" [Arabi	0.64	0.352	0.637	1.3e-22
TAIR|locus:2042182	234	AGL44 "AGAMOUS-like 44" [Arabi	0.744	0.397	0.562	7e-22
TAIR|locus:2121070	228	AGL21 "AT4G37940" [Arabidopsis	0.64	0.350	0.580	1e-20
TAIR|locus:2173522	242	AGL8 "AGAMOUS-like 8" [Arabido	0.744	0.384	0.36	6.1e-11
UNIPROTKB|Q0D4T4	249	MADS18 "MADS-box transcription	0.712	0.357	0.4	1.3e-10
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.744	0.378	0.372	1.6e-10
UNIPROTKB|Q9XJ66	228	MADS22 "MADS-box transcription	0.784	0.429	0.352	5.3e-10
TAIR|locus:2028830	255	CAL "CAULIFLOWER" [Arabidopsis	0.688	0.337	0.366	5.5e-10
UNIPROTKB|D2T2G0	238	gsqua2 "GSQUA2 protein" [Gerbe	0.544	0.285	0.434	6.8e-10

TAIR|locus:2082618 AGL16 "AGAMOUS-like 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 63/99 (63%), Positives = 80/99 (80%)

Query:     1 MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
             MGEELSGL+V+ LQNLENQLE+SL+GVR+KKDQ+L +EI+ LNR+GNL+HQENL+LHKKV
Sbjct:   111 MGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKV 170

Query:    61 NLINQENRELKKKVYEGRNVNAANSISQPTYTISNGYDM 99
             NL++Q+N EL +KV E   V  AN  S     ++NG DM
Sbjct:   171 NLMHQQNMELHEKVSEVEGVKIANKNS----LLTNGLDM 205

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010440 "stomatal lineage progression" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2066050 AGL17 "AGAMOUS-like 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 51/80 (63%), Positives = 66/80 (82%)

Query:     2 GEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61
             G EL+GL+VK+LQN+E+QLEMSL+G+R+K++Q+LT+EIKEL RK NL+H ENLEL +KV 
Sbjct:   112 GVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQ 171

Query:    62 LINQENRELKKKVYEGRNVN 81
              I+QEN EL KK Y   N N
Sbjct:   172 RIHQENVELYKKAYGTSNTN 191

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048578 "positive regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2042182 AGL44 "AGAMOUS-like 44" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 54/96 (56%), Positives = 71/96 (73%)

Query:     1 MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
             +GEELSG+N  DLQNLE+QL  SLKGVRLKKDQ++T+EI+ELNRKG ++ +EN EL   V
Sbjct:   112 VGEELSGMNANDLQNLEDQLVTSLKGVRLKKDQLMTNEIRELNRKGQIIQKENHELQNIV 171

Query:    61 NLINQENRELKKKVYEGRNVNAANSISQPTYTISNG 96
             +++ +EN +L+KKV+   N    NS   P   ISNG
Sbjct:   172 DIMRKENIKLQKKVHGRTNAIEGNSSVDP---ISNG 204

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0007584 "response to nutrient" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071249 "cellular response to nitrate" evidence=IEP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010167 "response to nitrate" evidence=IMP

TAIR|locus:2121070 AGL21 "AT4G37940" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 47/81 (58%), Positives = 67/81 (82%)

Query:     1 MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
             MGE+L+GL+V +L +LENQ+E+SL+G+R++K+Q+LT EI+EL++K NL+HQENL+L +KV
Sbjct:   111 MGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKV 170

Query:    61 NLINQENRELKKKVYEGRNVN 81
               I+QEN EL KK Y   N N
Sbjct:   171 QRIHQENVELYKKAYMA-NTN 190

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2173522 AGL8 "AGAMOUS-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 6.1e-11, P = 6.1e-11
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query:     1 MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
             MGE+L  L++K+LQ+LE+QL+ ++K +R +K+Q + + I  L +K   L   N  L KK+
Sbjct:   113 MGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKI 172

Query:    61 NLINQENRELKKKVYEGRNVNAANSISQ--PTYTISNGYD 98
                  + RE K    EG+ V  +NS S   P Y +++  D
Sbjct:   173 -----KEREKKTGQQEGQLVQCSNSSSVLLPQYCVTSSRD 207

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009911 "positive regulation of flower development" evidence=TAS

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0010154 "fruit development" evidence=IMP

UNIPROTKB|Q0D4T4 MADS18 "MADS-box transcription factor 18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 150 (57.9 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 36/90 (40%), Positives = 52/90 (57%)

Query:     1 MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
             +GE+L  L +K+LQ LE+QLE SLK +R KK+Q+L + I EL +K   L  +N  L K +
Sbjct:   113 LGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLM 172

Query:    61 NLINQENRELKKKVYEGRNVNAANSISQPT 90
                 ++N  +     E +N  A  S S PT
Sbjct:   173 ETEKEKNNAIINTNREEQN-GATPSTSSPT 201

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 149 (57.5 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 38/102 (37%), Positives = 58/102 (56%)

Query:     1 MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
             MGE+L  LN+K+LQ LE QLE SLK +R +K Q++ + I EL RK   L +EN  L K+ 
Sbjct:   113 MGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKE- 171

Query:    61 NLINQENRELKKKVYEGRNVNAANSISQ-------PTYTISN 95
              L+ ++  + ++  ++      ++S S        PT  ISN
Sbjct:   172 -LVEKQKVQKQQVQWDQTQPQTSSSSSSFMMREALPTTNISN 212

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9XJ66 MADS22 "MADS-box transcription factor 22" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 143 (55.4 bits), Expect = 5.3e-10, P = 5.3e-10
 Identities = 37/105 (35%), Positives = 60/105 (57%)

Query:     2 GEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61
             GEEL GL++ +LQ LE  LE  L  V L KDQ   ++I EL RK + L +EN++L  +V+
Sbjct:   112 GEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVS 171

Query:    62 LINQENREL---KKKVYEGRN----VNAANSISQPTYTISNGYDM 99
              I+   +++   +  V EG++    + A +S S  +    +G D+
Sbjct:   172 QISPAEKQVVDTENFVTEGQSSESVMTALHSGSSQSQDNDDGSDV 216

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

TAIR|locus:2028830 CAL "CAULIFLOWER" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 33/90 (36%), Positives = 56/90 (62%)

Query:     1 MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
             +GEEL  +++KDLQNLE QLE +LK +R +K+Q++ + +  L RK   + +EN  L K++
Sbjct:   115 LGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQI 174

Query:    61 NLINQENRELKKKVYEGRNVN-AANSISQP 89
                 +EN  L+ K  +   +N + + + QP
Sbjct:   175 K--ERENI-LRTKQTQCEQLNRSVDDVPQP 201

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=TAS

GO:0010582 "floral meristem determinacy" evidence=IEP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|D2T2G0 gsqua2 "GSQUA2 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 143 (55.4 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 30/69 (43%), Positives = 49/69 (71%)

Query:     1 MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
             +GE+L  LN+++LQ++E Q+E +LK VR +K+QV+ + I EL++K   L ++N  L KK+
Sbjct:   113 VGEDLEPLNLRELQSVEQQIETALKRVRTRKNQVMHESISELHKKERSLQEQNNTLSKKL 172

Query:    61 NLINQENRE 69
                NQ+N E
Sbjct:   173 KG-NQKNTE 180

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam01486	100	pfam01486, K-box, K-box region	9e-16

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 67.2 bits (165), Expect = 9e-16
 Identities = 26/60 (43%), Positives = 43/60 (71%)

Query: 1  MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60
          +GE+L  L++K+LQ LE QLE  LK +R +K+++L ++I+EL +K   L +EN  L +K+
Sbjct: 39 LGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLNQIEELQKKERELQEENRNLRQKL 98

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.72
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.39
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	94.48
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.2
smart00338	65	BRLZ basic region leucin zipper.	89.27
PRK13169	110	DNA replication intiation control protein YabA; Re	88.7
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	88.5
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	86.82
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	86.66
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	86.34
KOG4797	123	consensus Transcriptional regulator [Transcription	86.09
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	86.01
PF10504	159	DUF2452: Protein of unknown function (DUF2452); In	85.81
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	85.07
KOG0014	195	consensus MADS box transcription factor [Transcrip	82.45
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	80.21

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.72  E-value=2.4e-17  Score=111.90  Aligned_cols=61  Identities=49%  Similarity=0.748  Sum_probs=59.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620            1 MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN   61 (125)
Q Consensus         1 ~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~   61 (125)
                      +|+||++||++||..||++|+.||.+||+||+++|.++|+.+++|++.+.++|..|+.+++
T Consensus        39 ~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   39 MGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE   99 (100)
T ss_pred             ccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5999999999999999999999999999999999999999999999999999999998875

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.39  E-value=0.058  Score=34.61  Aligned_cols=51  Identities=29%  Similarity=0.458  Sum_probs=38.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620            8 LNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI   63 (125)
Q Consensus         8 Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~   63 (125)
                      ++++-|..||..+..|+..|..     +..+++.|+.+...|.++|..|..+....
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~L   51 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQL   51 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            5789999999999999999955     55566788888777777777776665543

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.48  E-value=0.77  Score=29.47  Aligned_cols=51  Identities=24%  Similarity=0.403  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620            8 LNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI   63 (125)
Q Consensus         8 Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~   63 (125)
                      +|++=|..||..+..|+..|     .++.-+|+.||.|...|..+-..+.....+.
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL   51 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREAL   51 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence            57888999999999999998     6777788999988887777666555554443

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.20  E-value=0.86  Score=29.76  Aligned_cols=43  Identities=28%  Similarity=0.458  Sum_probs=35.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHH
Q 047620            8 LNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLE   55 (125)
Q Consensus         8 Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~   55 (125)
                      +|++=|.+||..+..|+..|     .++.-+|+.+|.|-..|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999999     56667778888887777776554

>smart00338 BRLZ basic region leucin zipper

Probab=89.27  E-value=3.5  Score=25.19  Aligned_cols=40  Identities=28%  Similarity=0.383  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620           22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ   65 (125)
Q Consensus        22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~   65 (125)
                      .|..+-|.||...+    ..|..++..|..+|..|..++.....
T Consensus        15 ~aA~~~R~rKk~~~----~~Le~~~~~L~~en~~L~~~~~~l~~   54 (65)
T smart00338       15 EAARRSRERKKAEI----EELERKVEQLEAENERLKKEIERLRR   54 (65)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888887766    78999999999999999999887653

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=88.70  E-value=4.5  Score=27.95  Aligned_cols=48  Identities=29%  Similarity=0.362  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620           10 VKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNL   62 (125)
Q Consensus        10 ~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~   62 (125)
                      ++-|.+||+++..-+..|..-|.++.     .+-..-..|.-||..|+..+..
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~~~-----el~EEN~~L~iEN~~Lr~~l~~   54 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQLA-----ELLEENTALRLENDKLRERLEE   54 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899998888877766665443     3334444566666667666664

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=88.50  E-value=5.2  Score=27.43  Aligned_cols=48  Identities=29%  Similarity=0.317  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620           10 VKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNL   62 (125)
Q Consensus        10 ~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~   62 (125)
                      ++.|..||++|..-+..|..-|.++.     .+-..-..|.-||..|+..+..
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~~~-----~l~EEN~~L~~EN~~Lr~~l~~   54 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQLQ-----ELLEENARLRIENEHLRERLEE   54 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888777666655544332     3333333445555555555544

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=86.82  E-value=1.4  Score=27.20  Aligned_cols=29  Identities=31%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047620            1 MGEELSGLNVKDLQNLENQLEMSLKGVRL   29 (125)
Q Consensus         1 ~GedL~~Ls~~eL~~LE~~Le~~l~~VR~   29 (125)
                      +|+||+.||+.||..==..|+.=+.++|.
T Consensus        14 ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   14 IGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999997655555555555543

The function of this family is unknown.

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=86.66  E-value=4.8  Score=23.80  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620           21 EMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI   63 (125)
Q Consensus        21 e~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~   63 (125)
                      -.|..+-|.||...+    ..+..++..|..+|..|..++...
T Consensus        13 r~AA~r~R~rkk~~~----~~le~~~~~L~~en~~L~~~i~~L   51 (54)
T PF07716_consen   13 REAARRSRQRKKQRE----EELEQEVQELEEENEQLRQEIAQL   51 (54)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677788876655    788888999999999998887654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=86.34  E-value=5.5  Score=24.23  Aligned_cols=39  Identities=31%  Similarity=0.404  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620           22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN   64 (125)
Q Consensus        22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~   64 (125)
                      .|-.+.|.||...+    ..|..++..|..+|..|...+....
T Consensus        15 ~AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~~L~   53 (64)
T PF00170_consen   15 EAARRSRQRKKQYI----EELEEKVEELESENEELKKELEQLK   53 (64)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888887776    7888999999999999988876654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=86.09  E-value=4.3  Score=28.18  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHH
Q 047620           15 NLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKK   59 (125)
Q Consensus        15 ~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~   59 (125)
                      .+.+.+|.|+.-|.+.=+=-..++++.||.+++.|.+.|..|..+
T Consensus        45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E   89 (123)
T KOG4797|consen   45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERE   89 (123)
T ss_pred             eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667777777754333333566777777777777766666554

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=86.01  E-value=1.6  Score=30.13  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             HHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620           38 EIKELNRKGNLLHQENLELHKKVNLI   63 (125)
Q Consensus        38 ~i~~lkkk~~~l~een~~L~~~l~~~   63 (125)
                      ++..+|||...|+|||+.|+.|++..
T Consensus        73 e~~rlkkk~~~LeEENNlLklKievL   98 (108)
T cd07429          73 EVLRLKKKNQQLEEENNLLKLKIEVL   98 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578889999999999999998654

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function

Probab=85.81  E-value=6.2  Score=29.04  Aligned_cols=44  Identities=23%  Similarity=0.357  Sum_probs=36.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHH
Q 047620            9 NVKDLQNLENQLEMSLKGVRLK---KDQVLTDEIKELNRKGNLLHQE   52 (125)
Q Consensus         9 s~~eL~~LE~~Le~~l~~VR~r---K~~l~~~~i~~lkkk~~~l~ee   52 (125)
                      +..||..|=++++.|..-||.+   |..+|.+||..|++.-+.+.++
T Consensus        28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~   74 (159)
T PF10504_consen   28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE   74 (159)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999986   7778888888888776555443

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=85.07  E-value=2.5  Score=26.08  Aligned_cols=26  Identities=35%  Similarity=0.543  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhHHHHH
Q 047620           33 QVLTDEIKELNRKGNLLHQENLELHK   58 (125)
Q Consensus        33 ~l~~~~i~~lkkk~~~l~een~~L~~   58 (125)
                      +++.++|..|..+...|+.||..|+.
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~   42 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQ   42 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556666666666666666666643

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=82.45  E-value=0.17  Score=37.14  Aligned_cols=40  Identities=40%  Similarity=0.533  Sum_probs=35.9

Q ss_pred             CCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620            1 MGEELSGLNV-KDLQNLENQLEMSLKGVRLKKDQVLTDEIK   40 (125)
Q Consensus         1 ~GedL~~Ls~-~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~   40 (125)
                      +|+++.++++ .+|..+|.+++.++..+|..+...+..++.
T Consensus       137 ~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  177 (195)
T KOG0014|consen  137 TGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNF  177 (195)
T ss_pred             hccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhh
Confidence            3789999999 999999999999999999999988876665

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=80.21  E-value=15  Score=25.16  Aligned_cols=42  Identities=21%  Similarity=0.231  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620           22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN   64 (125)
Q Consensus        22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~   64 (125)
                      .++..+ +.+...+..+|..||+.+..+.+||..|+.+.+...
T Consensus         8 ~~l~~l-e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr   49 (107)
T PF06156_consen    8 DRLDQL-EQQLGQLLEELEELKKQLQELLEENARLRIENEHLR   49 (107)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444 345567789999999999999999999998876554

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.23
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	91.13
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	90.56
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	89.87
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	89.7
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	89.11
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	87.9
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	84.05

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.23  E-value=0.31  Score=31.06  Aligned_cols=46  Identities=26%  Similarity=0.432  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHH
Q 047620            8 LNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHK   58 (125)
Q Consensus         8 Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~   58 (125)
                      +|++=|.+||..+..|+..|     .++..+|+.||.|-..|.+++..++.
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78899999999999999998     66777778888888887777766433

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=91.13  E-value=1.1  Score=27.02  Aligned_cols=39  Identities=26%  Similarity=0.289  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620           22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN   64 (125)
Q Consensus        22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~   64 (125)
                      .|..+.|.||.+.+    ..|..++..|..+|..|..++....
T Consensus        19 eAArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~Lr   57 (63)
T 2dgc_A           19 EAARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARLK   57 (63)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888887766    8899999999999999998887653

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=90.56  E-value=1.3  Score=25.89  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620           23 SLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN   64 (125)
Q Consensus        23 ~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~   64 (125)
                      |..+-|.||...+    +.|..++..|..+|..|..++....
T Consensus        12 sA~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~L~   49 (55)
T 1dh3_A           12 AARESRRKKKEYV----KSLENRVAVLENQNKTLIEELKALK   49 (55)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677776555    7888999999999999999887654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=89.87  E-value=1.9  Score=25.38  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620           22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ   65 (125)
Q Consensus        22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~   65 (125)
                      .|..+-|.||.+.+    ..|..++..|..+|..|..++.....
T Consensus        11 ~AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~~   50 (61)
T 1t2k_D           11 AAASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLRN   50 (61)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567788887766    78999999999999999999887654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=89.70  E-value=1.8  Score=25.82  Aligned_cols=39  Identities=13%  Similarity=0.239  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620           23 SLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ   65 (125)
Q Consensus        23 ~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~   65 (125)
                      |..+-|.||.+.+    ..|..++..|..+|..|..++.....
T Consensus        13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L~~   51 (63)
T 2wt7_A           13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANLLK   51 (63)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566688887766    78999999999999999999877653

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=89.11  E-value=2.1  Score=25.34  Aligned_cols=40  Identities=23%  Similarity=0.322  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620           22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ   65 (125)
Q Consensus        22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~   65 (125)
                      .|..+-|.||.+.+    ..|..++..|..+|..|..++.....
T Consensus        11 ~AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L~~   50 (62)
T 1jnm_A           11 IAASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANMLRE   50 (62)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888887776    89999999999999999999877653

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=87.90  E-value=2.8  Score=25.01  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620           22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ   65 (125)
Q Consensus        22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~   65 (125)
                      .|..+-|.||..-+    ..+..++..|..+|..|..++...+.
T Consensus        12 ~AA~R~R~KKk~~~----~~le~~~~~L~~~N~~L~~~i~~L~~   51 (63)
T 1ci6_A           12 TAATRYRQKKRAEQ----EALTGECKELEKKNEALKERADSLAK   51 (63)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677787776554    78889999999999999999887654

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=84.05  E-value=1.7  Score=27.16  Aligned_cols=26  Identities=35%  Similarity=0.547  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhHHHHH
Q 047620           33 QVLTDEIKELNRKGNLLHQENLELHK   58 (125)
Q Consensus        33 ~l~~~~i~~lkkk~~~l~een~~L~~   58 (125)
                      +++.++|.+|..|...|+.||..|+.
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~   43 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKT   43 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888888888888877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00