Citrus Sinensis ID: 047630
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 392 | 2.2.26 [Sep-21-2011] | |||||||
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.278 | 0.181 | 0.333 | 2e-09 | |
| Q9ZPH9 | 633 | Probable methyltransferas | no | no | 0.443 | 0.274 | 0.323 | 7e-09 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.278 | 0.180 | 0.315 | 3e-08 | |
| B9DFI7 | 616 | Probable methyltransferas | no | no | 0.630 | 0.400 | 0.250 | 5e-08 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.288 | 0.178 | 0.344 | 1e-07 | |
| O80844 | 631 | Probable methyltransferas | no | no | 0.288 | 0.179 | 0.336 | 3e-07 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.288 | 0.176 | 0.336 | 4e-07 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.459 | 0.289 | 0.255 | 5e-07 | |
| Q9LYN3 | 610 | Probable methyltransferas | no | no | 0.413 | 0.265 | 0.258 | 1e-06 | |
| Q9SIZ3 | 589 | Probable methyltransferas | no | no | 0.423 | 0.281 | 0.265 | 1e-06 |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN-NFIASRGVVP 283
+ +++ K GTIR +D G GVA++ +++R I V+ + N F RG+
Sbjct: 181 MQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPA 240
Query: 284 LYISIS-QRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL 336
+ IS QRLPF N+ D+ H L W T + +++R+LRPGG FW+
Sbjct: 241 ILGIISTQRLPFPSNSFDMAHCSRCLIPW--TEFGGVYLLEVHRILRPGG-FWV 291
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 82/198 (41%), Gaps = 24/198 (12%)
Query: 144 RCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKDCFD 203
RCR P Y P+ P+S + W A +T L K Q KD F
Sbjct: 138 RCRIPAPYGYSLPFRWPES-------RDVAWFANV--PHTELTVEKKNQNWVRYEKDRFL 188
Query: 204 LQGVEKIRWTQKKGNGGLDFSIDEV--LATKKPGTIRIGLDIGGGVATFAVRMMERNI-T 260
G + G D IDE+ L K G+IR +D G GVA+F +M RNI T
Sbjct: 189 FPGGGTM------FPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVT 242
Query: 261 IVTTSMNLNGPFNNFIASRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318
+ + + F RG VP I + S RLPF DI H L W +
Sbjct: 243 MSFAPRDTHEAQVQFALERG-VPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTY 301
Query: 319 FLMFDIYRVLRPGGLFWL 336
+ D RVLRPGG +W+
Sbjct: 302 LIEVD--RVLRPGG-YWI 316
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN-NFIASRGVVP 283
+ +++ K GT+R +D G GVA++ +++R I ++ + N F RG+
Sbjct: 187 MQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIPA 246
Query: 284 LYISIS-QRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL 336
+ IS QRLPF N D+ H L W T + +I+R++RPGG FW+
Sbjct: 247 ILGIISTQRLPFPSNAFDMAHCSRCLIPW--TEFGGIYLLEIHRIVRPGG-FWV 297
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 110/283 (38%), Gaps = 36/283 (12%)
Query: 62 SEGDSASVPS-EFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFP-DELRRYMSYKVN 119
S D VPS F +G++ G + P GR P + RR M++
Sbjct: 52 SGADCNIVPSLNFETHHAGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTF--- 108
Query: 120 ASCPDDELLAQKLLLKGCEPLPRR-RCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYT 178
P D ++ ++ + C P + C P Y+ P+ PKS P Y
Sbjct: 109 ---PRDSMIYRE---RHCAPENEKLHCLIPAPKGYVTPFSWPKSRDYVP---------YA 153
Query: 179 CKNYTCLINRKHTQKGFDDCKDCFDLQGVEKIRWTQKKGNGGLDFSIDEVLAT--KKPGT 236
Y L K Q D F G + G D ID++ + + GT
Sbjct: 154 NAPYKALTVEKAIQNWIQYEGDVFRFPG------GGTQFPQGADKYIDQLASVIPMENGT 207
Query: 237 IRIGLDIGGGVATFAVRMMERNITIVT-TSMNLNGPFNNFIASRGVVPLYISI--SQRLP 293
+R LD G GVA++ + RN+ ++ + + F RGV P I + + +LP
Sbjct: 208 VRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLP 266
Query: 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL 336
+ D+ H L W ++ + D RVLRPGG +W+
Sbjct: 267 YPTRAFDMAHCSRCLIPWGANDGMYLMEVD--RVLRPGG-YWI 306
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 220 GLDFSIDEV--LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVT-TSMNLNGPFNNFI 276
G D ID++ L G IR +D G GVA+F +++R+I V+ + + F
Sbjct: 196 GADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHEAQVQFA 255
Query: 277 ASRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334
RGV P I I S+RLP+ D+ H L W L+ + D RVLRPGG +
Sbjct: 256 LERGV-PAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYLMEVD--RVLRPGG-Y 311
Query: 335 WL 336
W+
Sbjct: 312 WI 313
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 220 GLDFSIDEV--LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVT-TSMNLNGPFNNFI 276
G D ID++ L G+IR +D G GVA+F ++ RNIT ++ + + F
Sbjct: 190 GADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEAQVQFA 249
Query: 277 ASRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334
RGV P I I + RLP+ D+ H L W + + D RVLRPGG +
Sbjct: 250 LERGV-PAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVD--RVLRPGG-Y 305
Query: 335 WL 336
W+
Sbjct: 306 WI 307
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 220 GLDFSIDEV--LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVT-TSMNLNGPFNNFI 276
G D ID++ L G IR +D G GVA+F +++R+I ++ + + F
Sbjct: 213 GADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFA 272
Query: 277 ASRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334
RG VP I I S+RLP+ D+ H L W L+ D RVLRPGG +
Sbjct: 273 LERG-VPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVD--RVLRPGG-Y 328
Query: 335 WL 336
W+
Sbjct: 329 WI 330
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 90/243 (37%), Gaps = 63/243 (25%)
Query: 111 RRYMSYKVNASCPDDELLAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDS 170
R M Y+ PD+E L RC P Y+ P+P PKS
Sbjct: 109 RENMIYRERHCPPDNEKL---------------RCLVPAPKGYMTPFPWPKSR------- 146
Query: 171 SLVWTAYTCKNYTCLINRKHTQKGFDDCKDCFDLQGVEKIRWTQKKGN------------ 218
+ Y + L K Q W Q +GN
Sbjct: 147 --DYVHYANAPFKSLTVEKAGQN------------------WVQFQGNVFKFPGGGTMFP 186
Query: 219 GGLDFSIDEVLATK--KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN-NF 275
G D I+E+ + K G++R LD G GVA++ M++RN+ ++ + N F
Sbjct: 187 QGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQF 246
Query: 276 IASRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGL 333
RGV P I++ S LP+ D+ L W + + D RVLRPGG
Sbjct: 247 ALERGV-PAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVD--RVLRPGG- 302
Query: 334 FWL 336
+W+
Sbjct: 303 YWV 305
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 47/209 (22%)
Query: 144 RCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKDCFD 203
+C P HY P P P+S ++W Y + L+ K Q
Sbjct: 147 KCLVPLPQHYKVPLPWPQS-------RDMIW--YDNVPHPKLVEYKKDQN---------- 187
Query: 204 LQGVEKIRWTQKKG------NGGLDFS---------IDEVLATKKPGT-IRIGLDIGGGV 247
W +K G GG F I + L G +R+ LD+G GV
Sbjct: 188 --------WVRKSGPFFVFPGGGTQFKDGVIHYINFIQKTLPILDWGKKVRVVLDVGCGV 239
Query: 248 ATFAVRMMERN-ITIVTTSMNLNGPFNNFIASRGV-VPLYISISQRLPFFDNTLDIVHSM 305
A+F ++++N IT+ + + F RG+ L + +Q+LPF DN D++H
Sbjct: 240 ASFGGTLLDKNVITMSFAPKDEHEAQIQFALERGIPATLAVIGTQKLPFPDNAYDVIHCA 299
Query: 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334
+W + ++ RVLRPGG F
Sbjct: 300 RCRVHW--HGYGGRPLLELNRVLRPGGFF 326
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 49/215 (22%)
Query: 139 PLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDC 198
P P +C P +Y P P PKS ++W Y + L+ K Q
Sbjct: 118 PEPSPKCLLPLPDNYKPPVPWPKS-------RDMIW--YDNVPHPKLVEYKKEQN----- 163
Query: 199 KDCFDLQGVEKIRWTQKKGN------GGLDFS---------IDEVLATKKPG-TIRIGLD 242
W +K+G GG F I++ L + K G IR+ LD
Sbjct: 164 -------------WVKKEGEFLVFPGGGTQFKFGVTHYVEFIEKALPSIKWGKNIRVVLD 210
Query: 243 IGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIASRGVVPLYISI--SQRLPFFDNTL 299
+G GVA+F +++++ IT+ + + F RG +P +S+ +Q+L F N
Sbjct: 211 VGCGVASFGGSLLDKDVITMSFAPKDEHEAQIQFALERG-IPATLSVIGTQQLTFPSNAF 269
Query: 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334
D++H +W L ++ RVLRPGG F
Sbjct: 270 DLIHCARCRVHWDADGGKPLL--ELNRVLRPGGFF 302
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 392 | ||||||
| 255585566 | 400 | ATRAD3, putative [Ricinus communis] gi|2 | 0.834 | 0.817 | 0.862 | 1e-167 | |
| 224077354 | 399 | predicted protein [Populus trichocarpa] | 0.989 | 0.972 | 0.770 | 1e-165 | |
| 225465564 | 392 | PREDICTED: probable methyltransferase PM | 0.969 | 0.969 | 0.725 | 1e-160 | |
| 224069202 | 322 | predicted protein [Populus trichocarpa] | 0.818 | 0.996 | 0.841 | 1e-159 | |
| 357491909 | 388 | hypothetical protein MTR_5g077710 [Medic | 0.987 | 0.997 | 0.691 | 1e-157 | |
| 148908754 | 448 | unknown [Picea sitchensis] | 0.928 | 0.812 | 0.633 | 1e-134 | |
| 224129542 | 450 | predicted protein [Populus trichocarpa] | 0.818 | 0.713 | 0.608 | 1e-120 | |
| 224129550 | 326 | predicted protein [Populus trichocarpa] | 0.818 | 0.984 | 0.608 | 1e-119 | |
| 356555829 | 437 | PREDICTED: uncharacterized protein LOC10 | 0.915 | 0.821 | 0.560 | 1e-118 | |
| 302782167 | 320 | hypothetical protein SELMODRAFT_12874 [S | 0.808 | 0.990 | 0.608 | 1e-116 |
| >gi|255585566|ref|XP_002533472.1| ATRAD3, putative [Ricinus communis] gi|223526665|gb|EEF28904.1| ATRAD3, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust.
Identities = 283/328 (86%), Positives = 299/328 (91%), Gaps = 1/328 (0%)
Query: 66 SASVPSEFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDD 125
S +PSEFLAFTSGQ LPFGFNTNFDSDTIYPPVG++CTLFP+EL RYM+YKVN SCPDD
Sbjct: 72 SLDLPSEFLAFTSGQLLPFGFNTNFDSDTIYPPVGQSCTLFPNELNRYMNYKVNGSCPDD 131
Query: 126 ELLAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCL 185
ELLAQKLLLKGCEPLPRRRCR +Y EPYPLP SLWTTPPDSS+VWTAYTCK YTCL
Sbjct: 132 ELLAQKLLLKGCEPLPRRRCRPAAQPNYDEPYPLPTSLWTTPPDSSVVWTAYTCKGYTCL 191
Query: 186 INRKHTQKGFDDCKDCFDLQGVEKIRWTQKKGNGG-LDFSIDEVLATKKPGTIRIGLDIG 244
INR TQKGFDDCKDCFDL+G EK RW K+ N G LDF+IDEVLATKKPGTIRIGLDIG
Sbjct: 192 INRFRTQKGFDDCKDCFDLEGREKARWASKQSNAGSLDFAIDEVLATKKPGTIRIGLDIG 251
Query: 245 GGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHS 304
GGVATFAVRM +RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHS
Sbjct: 252 GGVATFAVRMRDRNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHS 311
Query: 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364
MHVLSNWIPTT LHFLMFDIYRVLRPGGLFWLDHFFCVG +LE VY P+IES+GFNKLKW
Sbjct: 312 MHVLSNWIPTTSLHFLMFDIYRVLRPGGLFWLDHFFCVGEELEQVYAPVIESIGFNKLKW 371
Query: 365 VVGRKLDRGPELREMYLSALLEKPFLDA 392
VVGRKLDRGPELREMYLSALLEKP ++
Sbjct: 372 VVGRKLDRGPELREMYLSALLEKPLKNS 399
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224077354|ref|XP_002305225.1| predicted protein [Populus trichocarpa] gi|222848189|gb|EEE85736.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 306/397 (77%), Positives = 332/397 (83%), Gaps = 9/397 (2%)
Query: 4 SPRNKPKSLSTNLFFIFFLLSTNFLTFFLSSILNSSS-CYLINPPGITIPTTTTASVSVS 62
SPR KPK LSTNLFF+ LLSTN LT FLSS SSS CYL I+ T ++S
Sbjct: 3 SPR-KPKPLSTNLFFLVLLLSTNLLTLFLSSTFYSSSFCYLHPISSISTLTQISSSSVAD 61
Query: 63 EGDSAS------VPSEFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSY 116
+ + +PSEFLAFTSGQ LP+GFNTNFDSDT YPPVG+ACT FPDEL R+MSY
Sbjct: 62 SDATENPDTQLDLPSEFLAFTSGQALPYGFNTNFDSDTFYPPVGQACTRFPDELSRFMSY 121
Query: 117 KVNASCPDDELLAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTA 176
KVN SCPDDELLAQKLLLKGCEPLPRRRCR Y++PYPLP SLWTTPP+SS+VWTA
Sbjct: 122 KVNGSCPDDELLAQKLLLKGCEPLPRRRCRPATQPDYVDPYPLPTSLWTTPPNSSVVWTA 181
Query: 177 YTCKNYTCLINRKHTQKGFDDCKDCFDLQGVEKIRWTQKKG-NGGLDFSIDEVLATKKPG 235
YTCK+YTCLINR TQKGFDDCKDCFDLQG EK RW ++ G LDF+IDEVLATKKPG
Sbjct: 182 YTCKDYTCLINRMKTQKGFDDCKDCFDLQGREKNRWASREVIEGSLDFTIDEVLATKKPG 241
Query: 236 TIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF 295
TIRIGLDIGGGVATFA+RM ERNITI+TTSMNLNGPFNNFIASRGVVPLYISISQRLPFF
Sbjct: 242 TIRIGLDIGGGVATFAIRMKERNITIITTSMNLNGPFNNFIASRGVVPLYISISQRLPFF 301
Query: 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIE 355
DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV Q DVY PLIE
Sbjct: 302 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVEDQFLDVYKPLIE 361
Query: 356 SVGFNKLKWVVGRKLDRGPELREMYLSALLEKPFLDA 392
++GF KLKWVVG+KLDRG ELREMYL+ALLEKP ++
Sbjct: 362 TIGFIKLKWVVGKKLDRGAELREMYLTALLEKPLKNS 398
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465564|ref|XP_002263360.1| PREDICTED: probable methyltransferase PMT8 [Vitis vinifera] gi|147861796|emb|CAN83179.1| hypothetical protein VITISV_013308 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 288/397 (72%), Positives = 320/397 (80%), Gaps = 17/397 (4%)
Query: 1 MDSSPRNKPKSLSTNLFFIFFLLSTNFLTFFLSSILNSSSCYLINPPGITIPTTTTASVS 60
MDSS + KP STN+FF+ L STNFLTF SS L SS IT TT A+V
Sbjct: 1 MDSSQKLKP--FSTNVFFLVVLFSTNFLTFLFSSSLYSSC-------SITPSTTHVAAVD 51
Query: 61 -------VSEGDSASVPSEFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRY 113
++ + +P+EF++FTS Q LPFGF TNFDSD+I PVG CT F ++L RY
Sbjct: 52 DPVSDNVINSQTTTDLPTEFISFTSPQLLPFGFTTNFDSDSIIAPVGHPCTFFANDLSRY 111
Query: 114 MSYKVNASCPDDELLAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLV 173
MSY+VN SCPDDEL AQKLLLKGCEPLPRRRCR P+ Y EPYPLP SLW+TPPDSS+V
Sbjct: 112 MSYRVNGSCPDDELFAQKLLLKGCEPLPRRRCRPTTPNEYQEPYPLPASLWSTPPDSSVV 171
Query: 174 WTAYTCKNYTCLINRKHTQKGFDDCKDCFDLQGVEKIRWT-QKKGNGGLDFSIDEVLATK 232
WTAYTCKNY+CLINRK QKGFDDCKDCFDL+G E+ RW K G+ LDF+IDEVL K
Sbjct: 172 WTAYTCKNYSCLINRKRNQKGFDDCKDCFDLEGTERYRWIGSKSGHNELDFTIDEVLEMK 231
Query: 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL 292
K GT+RIGLDIGGG TFAVRM+ERNITIVTTSMNLNGPFN+FIASRGVVPLYISISQRL
Sbjct: 232 KRGTVRIGLDIGGGAGTFAVRMLERNITIVTTSMNLNGPFNSFIASRGVVPLYISISQRL 291
Query: 293 PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352
PFFDNTLDIVHSMHVLSNWIP TLLHFL+FDIYRVLRPGGLFWLDHFFC+ Q+E+VY P
Sbjct: 292 PFFDNTLDIVHSMHVLSNWIPNTLLHFLLFDIYRVLRPGGLFWLDHFFCMDEQMEEVYKP 351
Query: 353 LIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKPF 389
LIESVGF KLKWVVG+KLDRGP+LREMYLSALLEKP
Sbjct: 352 LIESVGFKKLKWVVGKKLDRGPKLREMYLSALLEKPL 388
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069202|ref|XP_002302925.1| predicted protein [Populus trichocarpa] gi|222844651|gb|EEE82198.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/322 (84%), Positives = 287/322 (89%), Gaps = 1/322 (0%)
Query: 69 VPSEFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDDELL 128
+PSEFLAF+SGQ LP GFNTNFDSDT YPPVG+ACT FPDEL R+MSYKVN SCPDDEL
Sbjct: 1 LPSEFLAFSSGQVLPLGFNTNFDSDTFYPPVGQACTRFPDELSRFMSYKVNGSCPDDELF 60
Query: 129 AQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINR 188
AQKLLLKGCEPLPRRRCR Y+EPYPLP SLWTTPP+SS+VWTAYTCK YTCLINR
Sbjct: 61 AQKLLLKGCEPLPRRRCRPAAQPDYVEPYPLPTSLWTTPPNSSVVWTAYTCKVYTCLINR 120
Query: 189 KHTQKGFDDCKDCFDLQGVEKIRWTQKKG-NGGLDFSIDEVLATKKPGTIRIGLDIGGGV 247
TQKGFDDCKDCFDL G E+ RW ++ G LDF+IDEVLATKKPGTIRIGLDIGGGV
Sbjct: 121 GKTQKGFDDCKDCFDLHGREQNRWASRQTIEGSLDFTIDEVLATKKPGTIRIGLDIGGGV 180
Query: 248 ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHV 307
ATFAVRM ERNITI+TTSMNLNGPFNNFIASRGV+PLYISISQRLPFFDNTLDIVHSMHV
Sbjct: 181 ATFAVRMRERNITIITTSMNLNGPFNNFIASRGVMPLYISISQRLPFFDNTLDIVHSMHV 240
Query: 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367
LSNWIP+TLLHFLMFDIYRVLRPGGLFWLDHFFCV Q DVY PLIES+GF KLKWVVG
Sbjct: 241 LSNWIPSTLLHFLMFDIYRVLRPGGLFWLDHFFCVEDQFLDVYKPLIESIGFIKLKWVVG 300
Query: 368 RKLDRGPELREMYLSALLEKPF 389
+KLDRG ELREMYLSALLEKP
Sbjct: 301 KKLDRGAELREMYLSALLEKPL 322
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357491909|ref|XP_003616242.1| hypothetical protein MTR_5g077710 [Medicago truncatula] gi|355517577|gb|AES99200.1| hypothetical protein MTR_5g077710 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/392 (69%), Positives = 319/392 (81%), Gaps = 5/392 (1%)
Query: 1 MDSSPRNKPKSLSTNLFFIFFLLSTNFLTFFLSSILNSSSCYLINPPGITIPTTTTASVS 60
M S+ PK+L+TNL FI LL TN +T FLSS +SS+C P T T TA+ +
Sbjct: 1 MGSNINPNPKTLTTNLLFISLLLFTNLITLFLSSTYHSSTCT----PNFTTTATATATAA 56
Query: 61 VSEGDSASVPSEFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNA 120
+P EF A TS Q LP GFN NF+SDT++PP G ACTLFPD++R +MSY VN
Sbjct: 57 EDSAGDGYLPPEFFASTSPQKLPLGFNRNFNSDTVHPPAGSACTLFPDDIRSFMSYDVNG 116
Query: 121 SCPDDELLAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCK 180
SCPDDE+L+Q+LLLKGCEPLPRRRCR P ++ +P P P SLW+TP +SS+VWTAYTCK
Sbjct: 117 SCPDDEILSQRLLLKGCEPLPRRRCRPAAPPNFPQPIPFPSSLWSTPSNSSVVWTAYTCK 176
Query: 181 NYTCLINRKHTQKGFDDCKDCFDLQGVEKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIG 240
+YTCLI+R TQ+GFDDCKDCFDL G EK RWT + NG LDFSID+VL T+KPG++RIG
Sbjct: 177 SYTCLIDRSRTQRGFDDCKDCFDLNGREKHRWTNPRSNG-LDFSIDDVLETRKPGSVRIG 235
Query: 241 LDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLD 300
LDIGGGVATFAVRM +RNITI+TTS+NLNGPFN+FIASRGV+PLY+SISQR PFFDNTLD
Sbjct: 236 LDIGGGVATFAVRMKDRNITIITTSLNLNGPFNSFIASRGVLPLYMSISQRFPFFDNTLD 295
Query: 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN 360
IVHSMHVLSNWIP TLLHFL+FD+YRVLRPGGLFWLDHFFCVG QLE+VY P+IESVGF
Sbjct: 296 IVHSMHVLSNWIPETLLHFLLFDVYRVLRPGGLFWLDHFFCVGDQLENVYGPMIESVGFK 355
Query: 361 KLKWVVGRKLDRGPELREMYLSALLEKPFLDA 392
K+KWV G+KLD+GP+ +EMYLSALLEKPF D+
Sbjct: 356 KVKWVTGKKLDKGPQFQEMYLSALLEKPFKDS 387
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148908754|gb|ABR17484.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/368 (63%), Positives = 281/368 (76%), Gaps = 4/368 (1%)
Query: 22 LLSTNFLTFFLSSILNSSSCYLINPPGITIPTTTTASVSVSEGDSASVPSEFLAFTSGQN 81
L S+ ++ L++ L +L NP + E + S+P E FT+ +
Sbjct: 82 LKSSKQVSENLAAELTELIQFLRNPKSSNGGNADDPWLQWGEPNRVSLPKELKDFTAAKK 141
Query: 82 LPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDDELLAQKLLLKGCEPLP 141
LP G N +F SDTIYPPVG AC +F ++L +YM YK CP+DE+LAQKLLL+GCEPLP
Sbjct: 142 LPLGRNPSFGSDTIYPPVGHACAVFKEDLNKYMDYKPGHRCPEDEILAQKLLLRGCEPLP 201
Query: 142 RRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKDC 201
RRRC PS+Y EP+P P+S+W TPPDSS+VWTAY+CKNY+CLI RK+ K FDDCKDC
Sbjct: 202 RRRCHPATPSNYTEPFPFPESMWRTPPDSSVVWTAYSCKNYSCLIQRKYL-KVFDDCKDC 260
Query: 202 FDLQGVEKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITI 261
FDLQG EK RW G+ +D+SIDEVL K+ TIRIGLDIGGG TFAVRM ERN+TI
Sbjct: 261 FDLQGREKTRWLNGVGSD-IDYSIDEVLKIKR-HTIRIGLDIGGGTGTFAVRMRERNVTI 318
Query: 262 VTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLM 321
+TTSMN NGPFNNFIASRGVVP+YIS+S RLPFFDNTLDIVHSMHVLSNWIPT LL F++
Sbjct: 319 ITTSMNFNGPFNNFIASRGVVPMYISVSHRLPFFDNTLDIVHSMHVLSNWIPTVLLEFIL 378
Query: 322 FDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYL 381
+DI R+LRPGG+FWLD FFC+ QL+ +YVP+IE+VGFNKLKW +GRKLDRGP L+EMY+
Sbjct: 379 YDINRILRPGGVFWLDRFFCIEDQLK-IYVPMIENVGFNKLKWSIGRKLDRGPALKEMYI 437
Query: 382 SALLEKPF 389
SALLEKP
Sbjct: 438 SALLEKPL 445
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129542|ref|XP_002328742.1| predicted protein [Populus trichocarpa] gi|222839040|gb|EEE77391.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/324 (60%), Positives = 246/324 (75%), Gaps = 3/324 (0%)
Query: 66 SASVPSEFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDD 125
+A++ E + LP G++ SD +YPPVG AC + +EL +YM+Y+V CP D
Sbjct: 129 NAAMSDEVMLVVGPHKLPLGYSPRMGSDEVYPPVGGACLRYQEELAQYMTYEVGRECPVD 188
Query: 126 ELLAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCL 185
++ AQ+L+LKGCEPLPRRRC P++Y+EP P PKSLWTTPPD+S++W YTCK+Y CL
Sbjct: 189 DVFAQRLMLKGCEPLPRRRCHPKSPANYVEPTPFPKSLWTTPPDTSIIWDPYTCKSYKCL 248
Query: 186 INRKHTQKGFDDCKDCFDLQGVEKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGG 245
I R+ G+ DCKDCFDL+G EK RW NGGLD+ IDEVL T+ GTIRIG DIGG
Sbjct: 249 IERRKA-PGYFDCKDCFDLEGREKSRWLLD--NGGLDYGIDEVLKTRPQGTIRIGFDIGG 305
Query: 246 GVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSM 305
G TFA RM ERN+TI+T+SMNL+GPFN+FIASRG++ +++S+SQRLPFFDNTLDIVHSM
Sbjct: 306 GSGTFAARMKERNVTIITSSMNLDGPFNSFIASRGLISIHVSVSQRLPFFDNTLDIVHSM 365
Query: 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365
HVLSNWIP +L F ++DIYRVLRPGGLFWLD FFC+G+QL YVP+++ VGF L+W
Sbjct: 366 HVLSNWIPDAMLEFTLYDIYRVLRPGGLFWLDRFFCLGSQLNQTYVPMLDRVGFRNLRWN 425
Query: 366 VGRKLDRGPELREMYLSALLEKPF 389
G KLDRG + E Y SALLEKP
Sbjct: 426 AGMKLDRGIDKNEWYFSALLEKPM 449
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129550|ref|XP_002328744.1| predicted protein [Populus trichocarpa] gi|222839042|gb|EEE77393.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 197/324 (60%), Positives = 246/324 (75%), Gaps = 3/324 (0%)
Query: 66 SASVPSEFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDD 125
+A++ E + LP G++ SD +YPPVG AC + +EL +YM+Y+V CP D
Sbjct: 5 NAAMSDEVMLVVGPHKLPLGYSPRMGSDEVYPPVGGACLRYQEELAQYMTYEVGRECPVD 64
Query: 126 ELLAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCL 185
++ AQ+L+LKGCEPLPRRRC P++Y+EP P PKSLWTTPPD+S++W YTCK+Y CL
Sbjct: 65 DVFAQRLMLKGCEPLPRRRCHPKSPANYVEPTPFPKSLWTTPPDTSIIWDPYTCKSYKCL 124
Query: 186 INRKHTQKGFDDCKDCFDLQGVEKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGG 245
I R+ G+ DCKDCFDL+G EK RW NGGLD+ IDEVL T+ GTIRIG DIGG
Sbjct: 125 IERRKA-PGYFDCKDCFDLEGREKSRWLLD--NGGLDYGIDEVLKTRPQGTIRIGFDIGG 181
Query: 246 GVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSM 305
G TFA RM ERN+TI+T+SMNL+GPFN+FIASRG++ +++S+SQRLPFFDNTLDIVHSM
Sbjct: 182 GSGTFAARMKERNVTIITSSMNLDGPFNSFIASRGLISIHVSVSQRLPFFDNTLDIVHSM 241
Query: 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365
HVLSNWIP +L F ++DIYRVLRPGGLFWLD FFC+G+QL YVP+++ VGF L+W
Sbjct: 242 HVLSNWIPDAMLEFTLYDIYRVLRPGGLFWLDRFFCLGSQLNQTYVPMLDRVGFRNLRWN 301
Query: 366 VGRKLDRGPELREMYLSALLEKPF 389
G KLDRG + E Y SALLEKP
Sbjct: 302 AGMKLDRGIDKNEWYFSALLEKPM 325
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555829|ref|XP_003546232.1| PREDICTED: uncharacterized protein LOC100794863 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/373 (56%), Positives = 270/373 (72%), Gaps = 14/373 (3%)
Query: 22 LLSTNFLTFFLSSILNSSSCYLINPPGITIPTTTTASVSVSEGD----SASVPSEFLAFT 77
L++T+ L L LNSS+ + + I T + D S V S+ L+F
Sbjct: 73 LVATHSLLSELHHRLNSSNLLV---QALLIDLTRQQEKQSNSADQNQVSLKVGSDELSFA 129
Query: 78 SG-QNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDDELLAQKLLLKG 136
G LPFG++ SD I+ P G +C +EL +YM+Y++ CP D++LAQ+L+LKG
Sbjct: 130 LGPHKLPFGYSPRIGSDEIHLPAGASCMRLHEELTQYMAYEIGGECPMDDVLAQRLMLKG 189
Query: 137 CEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFD 196
CEP PRRRCR P++Y+EP PLP+SLWTTPPD+S+VW AY CK+Y CLI+RK+ + G
Sbjct: 190 CEPFPRRRCRPKSPTNYVEPTPLPESLWTTPPDTSIVWDAYACKSYQCLIDRKN-KPGSY 248
Query: 197 DCKDCFDLQGVEKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME 256
DCK+CFDLQG EK +W +GGLDF ID+VLATK GT+R+GLDIGG TFA RM E
Sbjct: 249 DCKNCFDLQGEEKSKWIFD--DGGLDFGIDQVLATKAMGTVRVGLDIGGETGTFAARMRE 306
Query: 257 RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316
RN+ I+T+++NL+GPFNN IASRG+VP++ISISQR PFFDNTLDIVHSM VLSNWIP T+
Sbjct: 307 RNVIIITSTLNLDGPFNNIIASRGLVPMHISISQRFPFFDNTLDIVHSMDVLSNWIPDTM 366
Query: 317 LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPEL 376
L F+++D+YRVLRPGGLFWLDHFFC G+QL YVP+++ +GFN+L+W VG KLDR L
Sbjct: 367 LEFVLYDVYRVLRPGGLFWLDHFFCFGSQLNKTYVPMLDRIGFNRLRWHVGTKLDRKNVL 426
Query: 377 REMYLSALLEKPF 389
Y+SAL+EKP
Sbjct: 427 ---YISALMEKPM 436
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302782167|ref|XP_002972857.1| hypothetical protein SELMODRAFT_12874 [Selaginella moellendorffii] gi|300159458|gb|EFJ26078.1| hypothetical protein SELMODRAFT_12874 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/319 (60%), Positives = 242/319 (75%), Gaps = 2/319 (0%)
Query: 72 EFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDDELLAQK 131
EF + Q LP GF++ +D + PVG AC + ++L YM YK CPDDE L QK
Sbjct: 3 EFQKLVTPQMLPLGFSSQLKTDALTSPVGHACLMHKEDLEEYMQYKAGELCPDDESLTQK 62
Query: 132 LLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHT 191
LL GCEPLPRRRC A P+ Y EP+P+PKS WT+PPD +++WTAYTCK++ CL N +
Sbjct: 63 LLTGGCEPLPRRRCFARLPAGYKEPFPVPKSFWTSPPDENIIWTAYTCKSFECL-NARKK 121
Query: 192 QKGFDDCKDCFDLQGVEKIRWT-QKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATF 250
++ F DC DCFDL+G E RW GGLD SI+EVL+ K G+IRIGLDIGGG TF
Sbjct: 122 KRIFADCLDCFDLEGRESERWAGSATAGGGLDLSIEEVLSFKPGGSIRIGLDIGGGSGTF 181
Query: 251 AVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSN 310
AVRM E N+TIVTT++N +GPFN+FIA RGV+PLY+++SQR PFFDNTLDIVHSMHVLSN
Sbjct: 182 AVRMREHNVTIVTTTLNFDGPFNSFIALRGVIPLYLTVSQRFPFFDNTLDIVHSMHVLSN 241
Query: 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKL 370
WIP +L F++FDI R+LRPGG+ WLDHFFC+ QL +VY+P+IE +G+ KL+W VG+KL
Sbjct: 242 WIPLGMLDFILFDIDRILRPGGILWLDHFFCIENQLNEVYIPMIERLGYKKLRWTVGKKL 301
Query: 371 DRGPELREMYLSALLEKPF 389
DRGPEL E YL+A+LEKPF
Sbjct: 302 DRGPELMERYLTAVLEKPF 320
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 392 | ||||||
| TAIR|locus:2079812 | 463 | AT3G05390 [Arabidopsis thalian | 0.737 | 0.624 | 0.474 | 1.4e-73 | |
| TAIR|locus:2125028 | 659 | AT4G01240 [Arabidopsis thalian | 0.755 | 0.449 | 0.467 | 3.2e-72 | |
| TAIR|locus:2164491 | 414 | AT5G40830 [Arabidopsis thalian | 0.783 | 0.741 | 0.445 | 9.4e-66 | |
| TAIR|locus:2086543 | 410 | AT3G27230 [Arabidopsis thalian | 0.778 | 0.743 | 0.434 | 7.6e-64 | |
| TAIR|locus:2019312 | 378 | AT1G29790 [Arabidopsis thalian | 0.556 | 0.576 | 0.393 | 1.2e-44 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.275 | 0.18 | 0.330 | 5.8e-08 | |
| TAIR|locus:2117728 | 633 | AT4G00750 [Arabidopsis thalian | 0.443 | 0.274 | 0.323 | 1.4e-07 | |
| TAIR|locus:2034522 | 603 | AT1G31850 [Arabidopsis thalian | 0.275 | 0.179 | 0.313 | 4.6e-07 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.413 | 0.253 | 0.281 | 1.4e-06 | |
| TAIR|locus:2127711 | 633 | AT4G10440 [Arabidopsis thalian | 0.288 | 0.178 | 0.344 | 1.8e-06 |
| TAIR|locus:2079812 AT3G05390 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 142/299 (47%), Positives = 194/299 (64%)
Query: 90 FDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDDELLAQKLLLKGCEPLPRRRCRAVG 149
F ++ +Y +G AC L EL +YM Y V A C DD LAQKL+L GC+PLPRRRC
Sbjct: 171 FGTERVYNTIGHACALMKMELEKYMDYDVGAYCDDDWNLAQKLMLNGCDPLPRRRCLTRA 230
Query: 150 PSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKDCFDLQGVEK 209
Y +PYP+ +SLW P D ++ W Y C+N+ CL + K+ ++G+ C CF+++ EK
Sbjct: 231 SMTYQKPYPINESLWKLPDDRNVRWGNYQCRNFACL-SSKNPKRGYTKCSGCFEMEK-EK 288
Query: 210 IRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLN 269
+W K + +DF I++VL K P IRIGLD G G TFA RM E+N+TIVTT++NL
Sbjct: 289 DKWV-KNSSLLVDFMIEDVLRVK-PSEIRIGLDYGVGTGTFAARMREKNVTIVTTALNLG 346
Query: 270 GPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLR 329
PFN IA RG++PLYIS++QRLPFFDNT+D++H+ ++ WI L+ F+++D RVLR
Sbjct: 347 APFNEMIALRGLIPLYISLNQRLPFFDNTMDMIHTTGLMDGWIDLLLMDFVLYDWDRVLR 406
Query: 330 PGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKP 388
PGGL W+D FFC L+D Y+ + + K KW + K E+YLSALLEKP
Sbjct: 407 PGGLLWIDRFFCKKKDLDD-YMYMFLQFRYKKHKWAISPK-----SKDEVYLSALLEKP 459
|
|
| TAIR|locus:2125028 AT4G01240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 143/306 (46%), Positives = 194/306 (63%)
Query: 89 NF-DSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDDELLAQKLLLKGCEPLPRRRCRA 147
NF ++ + +G AC +L YM Y V C DD LAQKL++ GC+PLPRRRC +
Sbjct: 353 NFMGANGTFTSIGHACFAMKKDLEEYMDYDVGEICNDDWRLAQKLMVHGCDPLPRRRCFS 412
Query: 148 VGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKDCFDLQGV 207
GP Y +P+P+ +SLW P + ++ W Y CKN+ CL + +KGF C DCF+L
Sbjct: 413 RGPQLYHKPFPINESLWKLPDNRNVRWGQYKCKNFACLASNTTARKGFFKCTDCFNLTHH 472
Query: 208 EKIRWTQK-----KGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIV 262
E RW + + N DFSI EVL K PG IRIGLD G TFA RM E+N+TIV
Sbjct: 473 ESPRWLNRGEIDPETNQTADFSIAEVLEIK-PGEIRIGLDFSIGTGTFAARMREQNVTIV 531
Query: 263 TTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMF 322
+ ++NL PFN IA RG+VPLY++++QRLPFFD+TLD++H+ L WI LL F++F
Sbjct: 532 SATINLGAPFNEMIALRGLVPLYLTVNQRLPFFDSTLDMIHTTRFLDGWIDLILLDFVLF 591
Query: 323 DIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLS 382
D RVLRPGGL W+D FFC+ + D Y+ +++ + K KWVV K D+ +E++ S
Sbjct: 592 DWDRVLRPGGLLWIDGFFCLKEDVSD-YMEAFKALRYRKHKWVVVPKKDKDD--KEVFFS 648
Query: 383 ALLEKP 388
A+LEKP
Sbjct: 649 AVLEKP 654
|
|
| TAIR|locus:2164491 AT5G40830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 144/323 (44%), Positives = 194/323 (60%)
Query: 69 VPSEFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDDELL 128
VP E F LP G ++ + VG +C + D L +YMSY V CPDD L
Sbjct: 102 VPQELKLFLQQHQLPLGKDSRTGITQMVASVGHSCEMSLDLLSQYMSYNVFEKCPDDWSL 161
Query: 129 AQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINR 188
AQKL+L+ CEPLPRRRC A H P SLW +SS+ W+ CK++ CL +
Sbjct: 162 AQKLILRACEPLPRRRCLAK-TVHKPGLALFPDSLWRPVGNSSVNWSGLGCKSFECLKGK 220
Query: 189 KHTQKGFDDCKDCFDLQ-GVEKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGV 247
K ++ DC CFDL EK R+ K NG DF ID+VL G IRIG DI G
Sbjct: 221 KLSR----DCVGCFDLATSHEKDRFV--KVNGKTDFLIDDVLDLGD-GKIRIGFDISSGS 273
Query: 248 ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHV 307
TFA RM E+N+ I++ ++N++ PF+ FIA+RG+ PL++S+ QRLPF+DN D++H+ +
Sbjct: 274 GTFAARMAEKNVNIISNTLNIDAPFSEFIAARGIFPLFMSLDQRLPFYDNVFDLIHASNG 333
Query: 308 LSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365
L + L FLMFD+ R+L+PGGLFWLD+F+C + + V LIE G+ KLKWV
Sbjct: 334 LDLAVSNKPEKLEFLMFDLDRILKPGGLFWLDNFYCGNDEKKRVLTRLIERFGYKKLKWV 393
Query: 366 VGRKLDRGPELREMYLSALLEKP 388
VG K D E++LSA+L+KP
Sbjct: 394 VGEKTDA-----EVFLSAVLQKP 411
|
|
| TAIR|locus:2086543 AT3G27230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 139/320 (43%), Positives = 188/320 (58%)
Query: 69 VPSEFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDDELL 128
VP E F LP G ++ + VG +C D L +YMSYKV CPDD L
Sbjct: 103 VP-ELKLFLQRHQLPLGKDSRTGITEMVSSVGHSCGKSTDLLSQYMSYKVFDRCPDDWSL 161
Query: 129 AQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINR 188
QKL+L+ CEPLPRRRC A + P SLW + + S+ W+ CK++ CL +
Sbjct: 162 GQKLILRACEPLPRRRCLAKTVQKQ-DLSKSPDSLWRSVSNKSVNWSGLGCKSFDCLKGK 220
Query: 189 KHTQKGFDDCKDCFDLQGVEKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVA 248
K ++ +C CFDL GVEK R+ + KG DF ID+VL G IRIG DI GG
Sbjct: 221 KLSK----ECVGCFDL-GVEKDRFVKVKGKN--DFLIDDVLGLGS-GKIRIGFDISGGSG 272
Query: 249 TFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVL 308
TFA RM E+N+T++T ++N PF+ FIA+RG+ PL++S+ R PF DN D++H+ L
Sbjct: 273 TFAARMAEKNVTVITNTLNNGAPFSEFIAARGLFPLFLSLDHRFPFLDNVFDLIHASSGL 332
Query: 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368
L FLMFD+ RVL+P GLFWLD+F+C + + +IE G+ KLKWV+G
Sbjct: 333 DVEGKAEKLEFLMFDLDRVLKPRGLFWLDNFYCANDEKKKELTRMIERFGYKKLKWVIGE 392
Query: 369 KLDRGPELREMYLSALLEKP 388
K D ++YLSA+L+KP
Sbjct: 393 KADA-----QVYLSAVLQKP 407
|
|
| TAIR|locus:2019312 AT1G29790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 91/231 (39%), Positives = 143/231 (61%)
Query: 160 PKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKDCFDLQGVEKIRWTQKKGNG 219
P++ + P+S+++W+ Y+CK++ CLI K + GFD L+ K +++ K
Sbjct: 156 PRNPSDSKPESNVLWSYYSCKSFDCLIT-KFSDLGFD-----LSLEK-SKSQFSAYKSE- 207
Query: 220 GLDFSIDEVLATKKPGT--IRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA 277
LD I ++L K +R+G+D+GGG +FA M RN+T++TT+MN N P++ +A
Sbjct: 208 -LDLPISQLLQIAKSANSVLRLGIDVGGGTGSFAAAMKARNVTVLTTTMNFNAPYSEAVA 266
Query: 278 SRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337
RG+VPL++ + QRLP FD +D+V ++ WIP T++ F FD+ R+LR GG WLD
Sbjct: 267 MRGLVPLHVPLQQRLPVFDGVVDLVRCGRAVNRWIPVTVMEFFFFDLDRILRGGGYLWLD 326
Query: 338 HFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKP 388
FF LE+VY P+I +G+ K+KW V K D + E++L+ALL+KP
Sbjct: 327 RFFSKKVDLENVYAPMIGKLGYKKVKWAVANKADS--KHGEVFLTALLQKP 375
|
|
| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 153 (58.9 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 38/115 (33%), Positives = 61/115 (53%)
Query: 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN-NFIASRGVVP 283
+ +++ K GTIR +D G GVA++ +++R I V+ + N F RG+ P
Sbjct: 181 MQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGI-P 239
Query: 284 LYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL 336
+ I +QRLPF N+ D+ H L W T + +++R+LRPGG FW+
Sbjct: 240 AILGIISTQRLPFPSNSFDMAHCSRCLIPW--TEFGGVYLLEVHRILRPGG-FWV 291
|
|
| TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 64/198 (32%), Positives = 84/198 (42%)
Query: 144 RCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKDCFD 203
RCR P Y P+ P+S + W A +T L K Q KD F
Sbjct: 138 RCRIPAPYGYSLPFRWPES-------RDVAWFANV--PHTELTVEKKNQNWVRYEKDRFL 188
Query: 204 LQGVEKIRWTQKKGNGGLDFSIDEV--LATKKPGTIRIGLDIGGGVATFAVRMMERNI-T 260
G + + + G D IDE+ L K G+IR +D G GVA+F +M RNI T
Sbjct: 189 FPGGGTM-FPR-----GADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVT 242
Query: 261 IVTTSMNLNGPFNNFIASRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318
+ + + F RGV P I + S RLPF DI H L W +
Sbjct: 243 MSFAPRDTHEAQVQFALERGV-PAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTY 301
Query: 319 FLMFDIYRVLRPGGLFWL 336
+ D RVLRPGG +W+
Sbjct: 302 LIEVD--RVLRPGG-YWI 316
|
|
| TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 146 (56.5 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 36/115 (31%), Positives = 60/115 (52%)
Query: 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN-NFIASRGVVP 283
+ +++ K GT+R +D G GVA++ +++R I ++ + N F RG+ P
Sbjct: 187 MQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFALERGI-P 245
Query: 284 LYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL 336
+ I +QRLPF N D+ H L W T + +I+R++RPGG FW+
Sbjct: 246 AILGIISTQRLPFPSNAFDMAHCSRCLIPW--TEFGGIYLLEIHRIVRPGG-FWV 297
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 51/181 (28%), Positives = 83/181 (45%)
Query: 167 PPDSSLVWTAYTCKNYTCLINRKHTQKGFDDC-KDCFDLQGVEKIRWTQKKGNG-----G 220
PP+ + + ++Y N H + + ++ ++G E+ R+ G G G
Sbjct: 158 PPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQVEG-ERFRFP---GGGTMFPRG 213
Query: 221 LDFSIDEV--LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTS-MNLNGPFNNFIA 277
D ID++ L G IR +D G GVA+F +++R+I ++ + + + F
Sbjct: 214 ADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFAL 273
Query: 278 SRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335
RGV P I I S+RLP+ D+ H L W L+ D RVLRPGG +W
Sbjct: 274 ERGV-PAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVD--RVLRPGG-YW 329
Query: 336 L 336
+
Sbjct: 330 I 330
|
|
| TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 42/122 (34%), Positives = 61/122 (50%)
Query: 220 GLDFSIDEV--LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTS-MNLNGPFNNFI 276
G D ID++ L G IR +D G GVA+F +++R+I V+ + + + F
Sbjct: 196 GADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHEAQVQFA 255
Query: 277 ASRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334
RGV P I I S+RLP+ D+ H L W L+ + D RVLRPGG +
Sbjct: 256 LERGV-PAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYLMEVD--RVLRPGG-Y 311
Query: 335 WL 336
W+
Sbjct: 312 WI 313
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 392 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 1e-11 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 2e-07 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 56/222 (25%), Positives = 84/222 (37%), Gaps = 58/222 (26%)
Query: 137 CEPLPRR-RCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGF 195
C P + RC P Y P P PKS VW Y +T L K Q
Sbjct: 28 CPPSEEKLRCLVPPPDGYKTPIPWPKSR-------DKVW--YANVPHTKLAEEKGGQN-- 76
Query: 196 DDCKDCFDLQGVEKIRWTQKKGN------GGLDF---------SIDEVL-ATKKPGTIRI 239
W + +G+ GG F + +++ G +R
Sbjct: 77 ----------------WVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN---FIASRGVVPLYISI--SQRLPF 294
LD+G GVA+F ++ R+ ++T S F RG VP + + ++RLP+
Sbjct: 121 ALDVGCGVASFGAYLLSRD--VLTMSFAPKDVHEAQVQFALERG-VPAMLGVLGTRRLPY 177
Query: 295 FDNTLDIVHSMHVLSNWIPTTLLH--FLMFDIYRVLRPGGLF 334
+ D+ H L W + L+ ++ RVLRPGG F
Sbjct: 178 PSRSFDMAHCSRCLIPW----HANDGILLLEVDRVLRPGGYF 215
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-07
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 241 LDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLD 300
LD+G G A + R T ++L+ R + ++ LPF D + D
Sbjct: 1 LDVGCGTGLLA-EALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFD 59
Query: 301 IVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGLFWL 336
+V S VL + P L +I RVL+PGG +
Sbjct: 60 VVVSSLVLHHLPDPERALR----EIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 392 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.85 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.79 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.73 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.66 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.64 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.64 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.62 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.61 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.61 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.59 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.57 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.57 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.56 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.55 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.52 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.51 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.51 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.51 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.5 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.49 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.49 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.49 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.47 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.46 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.45 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.44 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.43 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.42 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.42 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.41 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.4 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.4 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.4 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.39 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.38 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.38 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.37 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.36 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.35 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.33 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.33 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.31 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.31 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.31 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.31 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.29 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.29 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.28 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.28 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.26 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.25 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.24 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.23 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.23 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.22 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.22 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.22 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.21 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.21 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.21 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.2 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.2 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.2 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.2 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.19 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.19 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.19 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.18 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.17 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.17 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.16 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.16 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.14 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.14 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.13 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.12 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.12 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.1 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.07 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.05 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.04 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.04 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.03 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.03 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.03 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.02 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.99 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.99 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.97 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.96 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.96 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.95 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.94 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.92 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.92 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.92 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.92 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.9 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.9 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.9 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.88 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.88 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.87 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.87 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.85 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.85 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.85 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.82 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.82 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.8 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.8 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.8 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.79 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.78 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.77 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.77 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.76 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.76 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.75 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.75 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.75 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.74 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.73 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.71 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.71 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.71 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.69 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.63 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.62 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.55 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.55 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.52 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.48 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.48 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.46 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.44 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.43 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.41 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.38 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.37 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.37 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.35 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.35 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.33 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.31 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.3 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.29 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.29 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.28 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.27 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.27 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.25 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.24 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.23 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.21 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.2 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.18 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.17 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.17 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.1 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.09 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.09 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.08 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.08 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.07 | |
| PLN02366 | 308 | spermidine synthase | 98.06 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.05 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.03 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.02 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.02 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.99 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.98 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.97 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.97 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.97 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.96 | |
| PLN02476 | 278 | O-methyltransferase | 97.93 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.93 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.91 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.9 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.89 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.87 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.87 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.84 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.82 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.79 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.78 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.72 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.72 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.7 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.55 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.51 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.49 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.41 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.4 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.38 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.37 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.24 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.23 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.23 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.14 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.12 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.12 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.1 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.08 | |
| PLN02823 | 336 | spermine synthase | 97.05 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.05 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.03 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.03 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.98 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.98 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.97 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.95 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.85 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.84 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.76 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.74 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.65 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.63 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.62 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.57 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.49 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.47 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.4 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.39 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.31 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.28 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.23 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.22 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.17 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.17 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.02 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 95.99 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.95 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 95.93 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.89 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.88 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.75 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.71 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.67 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.55 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.5 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.49 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.25 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.18 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.02 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.97 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 94.89 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.87 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 94.8 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.75 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.66 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.56 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.38 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 94.25 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.79 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.68 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.59 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.36 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.07 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 92.88 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 92.67 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 92.5 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 92.5 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.4 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.68 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 91.64 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.63 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 91.46 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 90.02 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 89.97 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 89.88 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 89.86 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 89.48 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 89.44 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 87.17 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 87.01 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 86.94 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 86.87 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 86.03 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 85.67 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 85.5 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 84.01 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 83.56 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 83.15 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 82.98 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 82.88 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 82.78 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 81.11 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 80.99 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 80.94 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 80.75 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 80.66 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 80.09 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=330.70 Aligned_cols=242 Identities=33% Similarity=0.528 Sum_probs=199.3
Q ss_pred cccccCCCCChHH-HHH-------HHHHcCCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCcchh
Q 047630 115 SYKVNASCPDDEL-LAQ-------KLLLKGCEP-LPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCL 185 (392)
Q Consensus 115 ~y~~~~~Cp~~~~-l~~-------~~~~~~C~~-~~~r~c~~~~p~~y~~p~p~p~s~~~~p~d~~~~W~~y~~~~~~~L 185 (392)
+|+ ||-|... +.. ..++||||| .++.+|++++|+||+.|+|||+|+ +++|+ +|++|++|
T Consensus 1 dy~---PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SR-------d~iW~--~Nvph~~L 68 (506)
T PF03141_consen 1 DYI---PCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSR-------DYIWY--ANVPHTKL 68 (506)
T ss_pred CCc---CCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCccc-------ceeee--cccCchHH
Confidence 477 8999977 333 357999998 557799999999999999999999 99995 59999999
Q ss_pred hhccccCCCCCCCCcccccccccccceeccCC----CCcHHHHHHHHHhhC----CCCcccEEEEEcCCcchHHHHHHHc
Q 047630 186 INRKHTQKGFDDCKDCFDLQGVEKIRWTQKKG----NGGLDFSIDEVLATK----KPGTIRIGLDIGGGVATFAVRMMER 257 (392)
Q Consensus 186 ~~~~~~~~~~~~c~~cFd~~~~e~~~w~~~~~----~~~~~~lI~~ll~l~----~~~~ir~VLDIGCGtG~~a~~La~~ 257 (392)
+.+|..| +|+..++++|.|+++ ++|++.||+.+.++. .++.||++||+|||+|+|+++|.++
T Consensus 69 ~~~K~~q----------nWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 69 AEEKADQ----------NWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred hhhcccc----------cceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC
Confidence 9999999 898899999999987 368889988876654 5589999999999999999999999
Q ss_pred CCEEEEEecCCC-chhHHHHHhcCCccEEEec--cCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEE
Q 047630 258 NITIVTTSMNLN-GPFNNFIASRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 258 g~~vvg~~iD~~-a~~~~~aa~rg~i~~~~~d--~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
++.++.+..... ....+++.+||+ +.+.+. .++|||++++||+|||+.++..|.+.+. .+|.|++|+|||||+|
T Consensus 139 ~V~t~s~a~~d~~~~qvqfaleRGv-pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpGGyf 215 (506)
T PF03141_consen 139 NVTTMSFAPNDEHEAQVQFALERGV-PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPGGYF 215 (506)
T ss_pred CceEEEcccccCCchhhhhhhhcCc-chhhhhhccccccCCccchhhhhcccccccchhccc--ceeehhhhhhccCceE
Confidence 999877665432 245568899994 666554 7899999999999999999999998887 5999999999999999
Q ss_pred EEEeec---ccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEcCCCCC
Q 047630 335 WLDHFF---CVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKPFLDA 392 (392)
Q Consensus 335 ii~~~~---~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp~~~~ 392 (392)
|++... ...++..+++.++-+- .+.+||+.+.+.+ + +||||||.+++
T Consensus 216 v~S~ppv~~r~~~~~~~~~~~~~~l--~~~lCW~~va~~~------~---~aIwqKp~~~~ 265 (506)
T PF03141_consen 216 VLSGPPVYQRTDEDLEEEWNAMEDL--AKSLCWKKVAEKG------D---TAIWQKPTNNS 265 (506)
T ss_pred EecCCcccccchHHHHHHHHHHHHH--HHHHHHHHheeeC------C---EEEEeccCCch
Confidence 999753 3344555556655544 3679999776544 3 69999998763
|
; GO: 0008168 methyltransferase activity |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-21 Score=185.45 Aligned_cols=170 Identities=18% Similarity=0.259 Sum_probs=122.2
Q ss_pred CCChHH-HHHHHHHcCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCcchhhhccccCCCCCCCCc
Q 047630 122 CPDDEL-LAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKD 200 (392)
Q Consensus 122 Cp~~~~-l~~~~~~~~C~~~~~r~c~~~~p~~y~~p~p~p~s~~~~p~d~~~~W~~y~~~~~~~L~~~~~~~~~~~~c~~ 200 (392)
||.|.. |......+.|+ ++||||.+++||++++|.+.+..+.|+|+.
T Consensus 5 CP~C~~~l~~~~~~~~C~---~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~----------------------------- 52 (272)
T PRK11088 5 CPLCHQPLTLEENSWICP---QNHQFDCAKEGYVNLLPVQHKRSKDPGDNK----------------------------- 52 (272)
T ss_pred CCCCCcchhcCCCEEEcC---CCCCCccccCceEEeccccccCCCCCCcCH-----------------------------
Confidence 999988 77677889997 899999999999999998888888888765
Q ss_pred ccccccccccceeccCCCCcHHHHH-HHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC-----CEEEEEecCCCchhHH
Q 047630 201 CFDLQGVEKIRWTQKKGNGGLDFSI-DEVLATKKPGTIRIGLDIGGGVATFAVRMMERN-----ITIVTTSMNLNGPFNN 274 (392)
Q Consensus 201 cFd~~~~e~~~w~~~~~~~~~~~lI-~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g-----~~vvg~~iD~~a~~~~ 274 (392)
+|+ .++++|+..+........+ ..+....+. ....|||+|||+|.++..+++.. ..++| +|++..+..
T Consensus 53 --~~~-~ar~~fl~~g~y~~l~~~i~~~l~~~l~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~g--iD~s~~~l~ 126 (272)
T PRK11088 53 --EMM-QARRAFLDAGHYQPLRDAVANLLAERLDE-KATALLDIGCGEGYYTHALADALPEITTMQLFG--LDISKVAIK 126 (272)
T ss_pred --HHH-HHHHHHHHCCChHHHHHHHHHHHHHhcCC-CCCeEEEECCcCCHHHHHHHHhcccccCCeEEE--ECCCHHHHH
Confidence 343 4555666554311122222 222222221 22345999999999999998742 35666 666445555
Q ss_pred HHHhc-CCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 275 FIASR-GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 275 ~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.++++ ..+.+.++|...+|+++++||+|++.++. ..+.+++|+|||||+|++...
T Consensus 127 ~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~----------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 127 YAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP----------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred HHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC----------CCHHHHHhhccCCCEEEEEeC
Confidence 55544 34688999999999999999999987642 135899999999999988753
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=163.65 Aligned_cols=127 Identities=22% Similarity=0.358 Sum_probs=102.0
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhcC------CccEEEeccCcCCCCCCcccEEEE
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASRG------VVPLYISISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~rg------~i~~~~~d~~~Lpf~d~sFDlV~s 304 (392)
++.++ ||||||||.++..+++.. .+|++ +|++..+.+.+.++- .++|+++|++.|||+|++||+|.+
T Consensus 51 ~g~~v---LDva~GTGd~a~~~~k~~g~g~v~~--~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~ 125 (238)
T COG2226 51 PGDKV---LDVACGTGDMALLLAKSVGTGEVVG--LDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI 125 (238)
T ss_pred CCCEE---EEecCCccHHHHHHHHhcCCceEEE--EECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEe
Confidence 55666 999999999999999954 45666 677556666555442 167999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccch--------------------------------------
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL-------------------------------------- 346 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l-------------------------------------- 346 (392)
++.++++ .+.+++|+|++|||||||++++.++..+....
T Consensus 126 ~fglrnv---~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~ 202 (238)
T COG2226 126 SFGLRNV---TDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRF 202 (238)
T ss_pred eehhhcC---CCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhC
Confidence 9999998 45567999999999999999888864322110
Q ss_pred --HHHHHHHHHHcCCeEEEEEEe
Q 047630 347 --EDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 347 --~~~l~~ll~~aGf~~i~w~~~ 367 (392)
.+++.++++++||+.+.|...
T Consensus 203 p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 203 PDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred CCHHHHHHHHHhcCceEEeeEee
Confidence 677899999999999997743
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-18 Score=159.86 Aligned_cols=130 Identities=22% Similarity=0.379 Sum_probs=74.3
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHHHHHhc----C--CccEEEeccCcCCCCCCc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNNFIASR----G--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~~aa~r----g--~i~~~~~d~~~Lpf~d~s 298 (392)
.+...++.+| ||+|||||.++..+++. + ..|++ +|++..+.+.+.++ + .++++++|++.+|+++++
T Consensus 42 ~~~~~~g~~v---LDv~~GtG~~~~~l~~~~~~~~~v~~--vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s 116 (233)
T PF01209_consen 42 LLGLRPGDRV---LDVACGTGDVTRELARRVGPNGKVVG--VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS 116 (233)
T ss_dssp HHT--S--EE---EEET-TTSHHHHHHGGGSS---EEEE--EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-
T ss_pred ccCCCCCCEE---EEeCCChHHHHHHHHHHCCCccEEEE--ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc
Confidence 3444555555 99999999999999884 3 46666 66655665544432 2 478999999999999999
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccch--------------------------------
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL-------------------------------- 346 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l-------------------------------- 346 (392)
||+|++.+.++++. +..+.++|++|+|||||++++.++..+....
T Consensus 117 fD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~ 193 (233)
T PF01209_consen 117 FDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPE 193 (233)
T ss_dssp EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-------------------------
T ss_pred eeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccc
Confidence 99999999999873 4557999999999999999888875443221
Q ss_pred -------HHHHHHHHHHcCCeEEEEE
Q 047630 347 -------EDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 347 -------~~~l~~ll~~aGf~~i~w~ 365 (392)
.+++.++++++||+.++++
T Consensus 194 Si~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 194 SIRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 5667788888888887765
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=146.68 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=98.2
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHHHHHhc---------CCccEEEeccCcCCCCC
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNNFIASR---------GVVPLYISISQRLPFFD 296 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~~aa~r---------g~i~~~~~d~~~Lpf~d 296 (392)
+.+.++.++ ||+|||+|.++..+++. + ..++| +|++..+.+.+.++ ..+.++++|++.+|+++
T Consensus 69 ~~~~~~~~V---LDlGcGtG~~~~~la~~~~~~~~V~g--vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 69 SGAKMGDRV---LDLCCGSGDLAFLLSEKVGSDGKVMG--LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred hCCCCCCEE---EEECCcCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 344444455 99999999999999875 3 37777 55644555544322 13678999999999999
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--------------------------------
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------------------------------- 344 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------------------------------- 344 (392)
++||+|++.++++++. +...+++|++|+|||||++++.++.....
T Consensus 144 ~sfD~V~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 220 (261)
T PLN02233 144 CYFDAITMGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLK 220 (261)
T ss_pred CCEeEEEEecccccCC---CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHH
Confidence 9999999999999873 44579999999999999998887643221
Q ss_pred ------chHHHHHHHHHHcCCeEEEEE
Q 047630 345 ------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 345 ------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
...+++.++++++||+.++..
T Consensus 221 ~s~~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 221 SSINEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCEEEEE
Confidence 015668889999999998765
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-16 Score=157.42 Aligned_cols=208 Identities=18% Similarity=0.258 Sum_probs=144.7
Q ss_pred CCCccccCCCC-----CCCCCCCCCCCCCCCCCCCcccccccccCcchhhhccccCCCCCCCCcccccccccccceeccC
Q 047630 142 RRRCRAVGPSH-----YIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKDCFDLQGVEKIRWTQKK 216 (392)
Q Consensus 142 ~r~c~~~~p~~-----y~~p~p~p~s~~~~p~d~~~~W~~y~~~~~~~L~~~~~~~~~~~~c~~cFd~~~~e~~~w~~~~ 216 (392)
.+.|+.+.|+. -..+-+||+++...|+.-.. ..+...+. +....+.++|...
T Consensus 293 l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~-------~~~~g~~~---------------e~F~~Dt~~Wk~~- 349 (506)
T PF03141_consen 293 LEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSS-------GSIPGISP---------------EEFKEDTKHWKKR- 349 (506)
T ss_pred hhhhcCcCCcccccccccCCCCChhhhccCchhhhc-------CCcCCCCH---------------HHHHHHHHHHHHH-
Confidence 56899988874 45788999999777754321 01111111 1123455667443
Q ss_pred CCCcHHHHHHHHHh-hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC
Q 047630 217 GNGGLDFSIDEVLA-TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF 295 (392)
Q Consensus 217 ~~~~~~~lI~~ll~-l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~ 295 (392)
++.+.. ++. ....+++|+|+|+.+|.|.||++|.+..+.|.-+......+....+.+||++..++...+.+++.
T Consensus 350 ----V~~Y~~-l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTY 424 (506)
T PF03141_consen 350 ----VSHYKK-LLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTY 424 (506)
T ss_pred ----HHHHHH-hhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCC
Confidence 233322 222 23447899999999999999999999998885544333345556899999999999999999999
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCc
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPE 375 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~ 375 (392)
+++||+||+...+..+.++..++.+|.||+|+|||||.+||.+... ....++.+++...++...+. .+.+..
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~----vl~~v~~i~~~lrW~~~~~d----~e~g~~ 496 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD----VLEKVKKIAKSLRWEVRIHD----TEDGPD 496 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH----HHHHHHHHHHhCcceEEEEe----cCCCCC
Confidence 9999999999999999999999999999999999999999987543 23335556665444333222 223334
Q ss_pred ccceeeEEEEEc
Q 047630 376 LREMYLSALLEK 387 (392)
Q Consensus 376 ~~e~ylsai~~K 387 (392)
..|..| +.+|
T Consensus 497 ~~EkiL--~~~K 506 (506)
T PF03141_consen 497 GPEKIL--ICQK 506 (506)
T ss_pred CCceEE--EEEC
Confidence 456644 6665
|
; GO: 0008168 methyltransferase activity |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.4e-16 Score=122.57 Aligned_cols=91 Identities=31% Similarity=0.462 Sum_probs=74.0
Q ss_pred EEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhcC---CccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 241 LDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
||+|||+|.++..+++. +..++++| ++....+.+.++. .+.+..++.+++|+++++||+|++..+++++ ++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGID--ISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEE--S-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEe--CCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 89999999999999998 89999955 5345555444432 2458999999999999999999999999997 66
Q ss_pred HHHHHHHHHHcccCCcEEEE
Q 047630 317 LHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii 336 (392)
...+++|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 67899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=145.40 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=95.9
Q ss_pred cEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 238 RIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
..|||||||+|.++..+++. +..|+|+|++ ..+.+. +.+.+ .+.++++|+..+|+++++||+|++..+++
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s--~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYGANVKGITLS--PVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 34599999999999999985 7889885544 343332 22233 37889999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeeccc----cc-c----------------------hHHHHHHHHHHcCCeEE
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV----GA-Q----------------------LEDVYVPLIESVGFNKL 362 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~----~~-~----------------------l~~~l~~ll~~aGf~~i 362 (392)
|+. +...++++++|+|||||.|++.++... .+ . ..+++.++++++||..+
T Consensus 198 h~~---d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v 274 (340)
T PLN02244 198 HMP---DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDI 274 (340)
T ss_pred ccC---CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCee
Confidence 984 345799999999999999998765321 00 0 14578899999999998
Q ss_pred EEEEe
Q 047630 363 KWVVG 367 (392)
Q Consensus 363 ~w~~~ 367 (392)
+....
T Consensus 275 ~~~d~ 279 (340)
T PLN02244 275 KTEDW 279 (340)
T ss_pred EeeeC
Confidence 87633
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8e-15 Score=141.18 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=99.2
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
+.++.+| ||||||+|..+..+++ .+.++++ +|++..+.+.+.++ ..+.+..+|+...|+++++||+|++.
T Consensus 50 l~~~~~V---LDiGcG~G~~a~~la~~~~~~v~g--iD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~ 124 (263)
T PTZ00098 50 LNENSKV---LDIGSGLGGGCKYINEKYGAHVHG--VDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSR 124 (263)
T ss_pred CCCCCEE---EEEcCCCChhhHHHHhhcCCEEEE--EECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEh
Confidence 4455555 9999999999999987 4678888 44534444444332 24778889998889999999999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----c--------------hHHHHHHHHHHcCCeEEEEEE
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----Q--------------LEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----~--------------l~~~l~~ll~~aGf~~i~w~~ 366 (392)
.+++|+ +..+...++++++|+|||||+|++.++..... + ..+++.++++++||+.+.+..
T Consensus 125 ~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 125 DAILHL-SYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred hhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence 888885 33456789999999999999999987633210 0 146799999999999998873
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=134.47 Aligned_cols=133 Identities=20% Similarity=0.228 Sum_probs=94.0
Q ss_pred HHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCcCCCCCCcc
Q 047630 226 DEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQRLPFFDNTL 299 (392)
Q Consensus 226 ~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~Lpf~d~sF 299 (392)
.+.+...+++++ ||+|||+|.++..|++++.+|+++| ++..+.+. +...+. +.+.++|...+++ +++|
T Consensus 23 ~~~l~~~~~~~v---LDiGcG~G~~a~~La~~g~~V~gvD--~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~f 96 (197)
T PRK11207 23 LEAVKVVKPGKT---LDLGCGNGRNSLYLAANGFDVTAWD--KNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEY 96 (197)
T ss_pred HHhcccCCCCcE---EEECCCCCHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCc
Confidence 334444455566 9999999999999999999999955 43333332 223332 5677788877776 4679
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------c---hHHHHHHHHHHcCCeEEEEEEe
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------Q---LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------~---l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
|+|++..++|+ .+++.+..+++++.|+|||||++++..++...+ . ..+++.+.++ ||+.+.....
T Consensus 97 D~I~~~~~~~~-~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~ 171 (197)
T PRK11207 97 DFILSTVVLMF-LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNED 171 (197)
T ss_pred CEEEEecchhh-CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCC
Confidence 99999999876 456677899999999999999976654432211 0 1455777776 7988877533
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=127.09 Aligned_cols=131 Identities=21% Similarity=0.287 Sum_probs=96.0
Q ss_pred HHHHHHHHHh-hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcc
Q 047630 221 LDFSIDEVLA-TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 221 ~~~lI~~ll~-l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sF 299 (392)
....+..+.. ..++++| ||||||+|.++..|++.+.+++++|++ ...... ..+.....+....+.++++|
T Consensus 9 ~~~~~~~~~~~~~~~~~v---LDiGcG~G~~~~~l~~~~~~~~g~D~~--~~~~~~----~~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRV---LDIGCGTGSFLRALAKRGFEVTGVDIS--PQMIEK----RNVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp HHHHHHHHHTCTTTTSEE---EEESSTTSHHHHHHHHTTSEEEEEESS--HHHHHH----TTSEEEEEECHTHHCHSSSE
T ss_pred HHHHHHHHhcccCCCCEE---EEEcCCCCHHHHHHHHhCCEEEEEECC--HHHHhh----hhhhhhhhhhhhhhccccch
Confidence 4455566654 3344555 999999999999999999999995543 333323 22334444444555678999
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-----------cc---------hHHHHHHHHHHcCC
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----------AQ---------LEDVYVPLIESVGF 359 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----------~~---------l~~~l~~ll~~aGf 359 (392)
|+|+|+.+++|+. +...+|+++.++|||||++++....... .. ..+.+..+++++||
T Consensus 80 D~i~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 80 DLIICNDVLEHLP---DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp EEEEEESSGGGSS---HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTE
T ss_pred hhHhhHHHHhhcc---cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCC
Confidence 9999999999973 5678999999999999999999875321 00 06789999999999
Q ss_pred eEEE
Q 047630 360 NKLK 363 (392)
Q Consensus 360 ~~i~ 363 (392)
++++
T Consensus 157 ~iv~ 160 (161)
T PF13489_consen 157 EIVE 160 (161)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=134.53 Aligned_cols=119 Identities=26% Similarity=0.439 Sum_probs=94.7
Q ss_pred EEEEcCCcchHHHHHHHc--------CCEEEEEecCCCchhHHHHHhc----CC-----ccEEEeccCcCCCCCCcccEE
Q 047630 240 GLDIGGGVATFAVRMMER--------NITIVTTSMNLNGPFNNFIASR----GV-----VPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--------g~~vvg~~iD~~a~~~~~aa~r----g~-----i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+||++||||.++..+.+. +.+|++ +|+++++.....+| ++ +.|+.+|+++|||++++||+.
T Consensus 104 ~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v--~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~y 181 (296)
T KOG1540|consen 104 VLDVAGGTGDIAFRILRHVKSQFGDRESKVTV--LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAY 181 (296)
T ss_pred EEEecCCcchhHHHHHHhhccccCCCCceEEE--EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeE
Confidence 499999999999988872 256777 55655666543332 22 678999999999999999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc-h-----------------------------------
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ-L----------------------------------- 346 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~-l----------------------------------- 346 (392)
...+.+.++ .++++.|+|++|||||||+|.+-+|-....+ +
T Consensus 182 TiafGIRN~---th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~r 258 (296)
T KOG1540|consen 182 TIAFGIRNV---THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRR 258 (296)
T ss_pred EEecceecC---CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhc
Confidence 999999998 4455699999999999999988877443311 1
Q ss_pred ---HHHHHHHHHHcCCeEEE
Q 047630 347 ---EDVYVPLIESVGFNKLK 363 (392)
Q Consensus 347 ---~~~l~~ll~~aGf~~i~ 363 (392)
.+++..+++++||..++
T Consensus 259 fp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 259 FPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred CCCHHHHHHHHHHcCCcccc
Confidence 67799999999999987
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-14 Score=134.66 Aligned_cols=124 Identities=18% Similarity=0.101 Sum_probs=93.9
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
.|||||||+|.++..+++. +..++| +|++..+.+.+.+++ +.++++|++.++ ++++||+|+++.++|++. +
T Consensus 32 ~vLDlGcG~G~~~~~l~~~~p~~~v~g--vD~s~~~~~~a~~~~-~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~---d 104 (255)
T PRK14103 32 RVVDLGCGPGNLTRYLARRWPGAVIEA--LDSSPEMVAAARERG-VDARTGDVRDWK-PKPDTDVVVSNAALQWVP---E 104 (255)
T ss_pred EEEEEcCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHhcC-CcEEEcChhhCC-CCCCceEEEEehhhhhCC---C
Confidence 3499999999999999986 567777 556445555555555 789999988875 568999999999998863 3
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecc----------------ccc--------------chHHHHHHHHHHcCCeEEEEEE
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFC----------------VGA--------------QLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~----------------~~~--------------~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
.+.++++++++|||||.+++..... .+. ...+.+.++++++||+...|..
T Consensus 105 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 184 (255)
T PRK14103 105 HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWET 184 (255)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEee
Confidence 4579999999999999998753110 000 0156799999999999877775
Q ss_pred eec
Q 047630 367 GRK 369 (392)
Q Consensus 367 ~~k 369 (392)
...
T Consensus 185 ~~~ 187 (255)
T PRK14103 185 TYV 187 (255)
T ss_pred eee
Confidence 443
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=142.20 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=95.6
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.|||||||+|.++..+++.+.+|+| +|++..+.+.+.++ + .+.+++++++.+++.+++||+|++..+++|+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~~V~G--ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGATVTG--VDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 3599999999999999999999998 55544444433322 1 3678899999999888999999999999998
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccc------------------------cc--hHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------------------AQ--LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------------------------~~--l~~~l~~ll~~aGf~~i~w~ 365 (392)
.++ ..+++++.|+|||||.+++..+.... .. ..+++.++++++||+.+...
T Consensus 212 ~d~---~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 212 ANP---AEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 544 46999999999999999988642210 00 16779999999999988764
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=138.61 Aligned_cols=125 Identities=22% Similarity=0.186 Sum_probs=94.0
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH--HHHh-----cCCccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN--FIAS-----RGVVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~--~aa~-----rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||||||+|.++..+++.+. .|+| +|++..+.. .+.+ ...+.++.++++.+|+ +++||+|+|..+++|
T Consensus 125 ~VLDIGCG~G~~~~~la~~g~~~V~G--iD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 125 TVLDVGCGNGYHMWRMLGAGAKLVVG--IDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred EEEEeccCCcHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 349999999999999999876 4777 556443332 1211 1236788889999998 889999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccc---------cc-----------hHHHHHHHHHHcCCeEEEEEEeec
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------AQ-----------LEDVYVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------~~-----------l~~~l~~ll~~aGf~~i~w~~~~k 369 (392)
.. +...++++++++|||||.|+++.+.... .. -.+.+..+++++||+.++......
T Consensus 202 ~~---dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 202 RR---SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred cC---CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 74 3446999999999999999987643211 00 145689999999999998875544
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=131.31 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=93.2
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCC-CCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLP-FFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lp-f~d~sFDlV~s~~~l~~ 310 (392)
.|||+|||+|.++..+++.+..|+++| ++..+.+.+.+ .+ .+.+++++...++ +.+++||+|++..++++
T Consensus 47 ~vLDiGcG~G~~a~~la~~g~~v~~vD--~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~ 124 (255)
T PRK11036 47 RVLDAGGGEGQTAIKLAELGHQVILCD--LSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW 124 (255)
T ss_pred EEEEeCCCchHHHHHHHHcCCEEEEEE--CCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence 459999999999999999999999854 53444443332 23 2578888887764 56789999999999988
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccc------------------------------cchHHHHHHHHHHcCCe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------------------------AQLEDVYVPLIESVGFN 360 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------------------------------~~l~~~l~~ll~~aGf~ 360 (392)
+.++ ..++.++.|+|||||++++..+.... .-..+++.++++++||+
T Consensus 125 ~~~~---~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~ 201 (255)
T PRK11036 125 VADP---KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQ 201 (255)
T ss_pred hCCH---HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCe
Confidence 7443 46999999999999999876432110 01156788999999999
Q ss_pred EEEEEEe
Q 047630 361 KLKWVVG 367 (392)
Q Consensus 361 ~i~w~~~ 367 (392)
.+.+.-+
T Consensus 202 ~~~~~gi 208 (255)
T PRK11036 202 IMGKTGV 208 (255)
T ss_pred EeeeeeE
Confidence 9877643
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=127.67 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=79.7
Q ss_pred ccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 237 IRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
...|||+|||+|.++..+++.+..++++| ++..+.+.+.++. ...++++|.+.+|+++++||+|+++.++++. .
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D--~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~---~ 117 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALD--LSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWC---G 117 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEE--CCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhc---C
Confidence 34569999999999999999998998854 5445555554443 2578899999999999999999999998765 3
Q ss_pred hHHHHHHHHHHcccCCcEEEEEeec
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+...++.++.|+|||||.+++..+.
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4457999999999999999988653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-13 Score=125.94 Aligned_cols=129 Identities=20% Similarity=0.251 Sum_probs=93.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sFDl 301 (392)
+.++.+| ||+|||+|.++..+++. +..+++ +|++..+.+.+.+ .+ .+.++.+|...+++++++||+
T Consensus 43 ~~~~~~v---LDiGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 117 (231)
T TIGR02752 43 VQAGTSA---LDVCCGTADWSIALAEAVGPEGHVIG--LDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDY 117 (231)
T ss_pred CCCCCEE---EEeCCCcCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccE
Confidence 3444455 99999999999999874 347777 4453344433222 22 367888999889988899999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc---------------------------c---------
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA---------------------------Q--------- 345 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~---------------------------~--------- 345 (392)
|++.++++++ .+..++++++.|+|||||++++.+...... +
T Consensus 118 V~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 194 (231)
T TIGR02752 118 VTIGFGLRNV---PDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTR 194 (231)
T ss_pred EEEecccccC---CCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHH
Confidence 9999999876 334579999999999999998776422110 0
Q ss_pred ---hHHHHHHHHHHcCCeEEEEEEe
Q 047630 346 ---LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 346 ---l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
..+++.++++++||+.++....
T Consensus 195 ~~~~~~~l~~~l~~aGf~~~~~~~~ 219 (231)
T TIGR02752 195 DFPGMDELAEMFQEAGFKDVEVKSY 219 (231)
T ss_pred HcCCHHHHHHHHHHcCCCeeEEEEc
Confidence 0356889999999999876633
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=133.29 Aligned_cols=127 Identities=20% Similarity=0.139 Sum_probs=92.2
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHH--HHh-----cCCccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNF--IAS-----RGVVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~--aa~-----rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||||||+|.++..++..+. .|+| +|++..+... +++ ...+.+...+++.+|.. ++||+|+|+.+++|
T Consensus 124 ~VLDvGCG~G~~~~~~~~~g~~~v~G--iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 124 TILDVGCGSGYHMWRMLGHGAKSLVG--IDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred EEEEeccCCcHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhc
Confidence 349999999999999998876 4777 6664443321 111 12356667788888764 58999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccc---------cc-----------hHHHHHHHHHHcCCeEEEEEEeecc
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------AQ-----------LEDVYVPLIESVGFNKLKWVVGRKL 370 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------~~-----------l~~~l~~ll~~aGf~~i~w~~~~k~ 370 (392)
+.+ ...+|++++|+|||||.|++....... +. -...+..+++++||+.++......+
T Consensus 201 ~~d---p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 201 RKS---PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLKT 277 (314)
T ss_pred cCC---HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccCC
Confidence 744 346999999999999999987642211 00 1456888999999999998866554
Q ss_pred C
Q 047630 371 D 371 (392)
Q Consensus 371 d 371 (392)
.
T Consensus 278 t 278 (314)
T TIGR00452 278 T 278 (314)
T ss_pred C
Confidence 3
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=9e-13 Score=131.00 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=104.2
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc---CCccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR---GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r---g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
.|||||||+|.++..+++. +.+++++| ++..+.+.+.++ ..+.++.+|.+.+++++++||+|++..+++++.+
T Consensus 116 ~VLDLGcGtG~~~l~La~~~~~~~VtgVD--~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d 193 (340)
T PLN02490 116 KVVDVGGGTGFTTLGIVKHVDAKNVTILD--QSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
T ss_pred EEEEEecCCcHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC
Confidence 3499999999999888873 45777744 534444444332 2368899999999999999999999999988744
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeecccc-------------cchHHHHHHHHHHcCCeEEEEEEeeccCC-CCc-cc-
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-------------AQLEDVYVPLIESVGFNKLKWVVGRKLDR-GPE-LR- 377 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~-------------~~l~~~l~~ll~~aGf~~i~w~~~~k~d~-~~~-~~- 377 (392)
. +.++++++|+|||||.+++....... -...+++.++++++||+.++++....... +.+ .+
T Consensus 194 ~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~ 270 (340)
T PLN02490 194 P---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGL 270 (340)
T ss_pred H---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccc
Confidence 3 46999999999999999776432111 01256799999999999999886543221 111 11
Q ss_pred ceeeEEEEEcCCC
Q 047630 378 EMYLSALLEKPFL 390 (392)
Q Consensus 378 e~ylsai~~Kp~~ 390 (392)
.+-.++..+||-+
T Consensus 271 ~~~~~v~~~k~~~ 283 (340)
T PLN02490 271 IMGCSVTGVKPAS 283 (340)
T ss_pred eeeEEEEEecccc
Confidence 2224567788754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-13 Score=140.29 Aligned_cols=122 Identities=20% Similarity=0.332 Sum_probs=93.8
Q ss_pred EEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc--C---CccEEEeccCcCCCCCCcccEEEEcccccccC
Q 047630 239 IGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR--G---VVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r--g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
.|||||||+|.++..+++. +..++|+| ++..+...+.++ + .+.+.++|...+++++++||+|++..+++|+.
T Consensus 269 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--iS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~ 346 (475)
T PLN02336 269 KVLDVGCGIGGGDFYMAENFDVHVVGID--LSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ 346 (475)
T ss_pred EEEEEeccCCHHHHHHHHhcCCEEEEEE--CCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccC
Confidence 3499999999999999874 67888855 533444433322 1 36788999988898889999999999999984
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeeccccc-----------------chHHHHHHHHHHcCCeEEEEE
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-----------------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-----------------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+ .+.++++++|+|||||.+++.++..... ...+.+.++++++||+++.+.
T Consensus 347 d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 347 D---KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred C---HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 3 4569999999999999999987643210 015568999999999998765
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-13 Score=130.20 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=100.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC-ccEEEeccCcCCCCCCcccEEEEc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRGV-VPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
..+++++ ||+|||+|.++..+++.|.+|+++|++ ..+.+ .+.+.+. +.+.+.|....++ +++||+|++.
T Consensus 118 ~~~~~~v---LDlGcG~G~~~~~la~~g~~V~avD~s--~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 118 TVKPGKA---LDLGCGQGRNSLYLALLGFDVTAVDIN--QQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred ccCCCCE---EEeCCCCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEc
Confidence 3344555 999999999999999999999995544 33333 2233342 5566777766555 6789999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------chHHHHHHHHHHcCCeEEEEEEee----ccC
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------QLEDVYVPLIESVGFNKLKWVVGR----KLD 371 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------~l~~~l~~ll~~aGf~~i~w~~~~----k~d 371 (392)
.++++ .+++.+..+++++.|+|||||++++........ --..++.+.+.. |+++++.... +.+
T Consensus 192 ~vl~~-l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~~~~~~~~~ 268 (287)
T PRK12335 192 VVLMF-LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNENVGHLHKTD 268 (287)
T ss_pred chhhh-CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEeccccchhhhc
Confidence 99977 456677899999999999999976654322111 115667777765 8998885332 333
Q ss_pred C-CCcccceeeEEEEEcC
Q 047630 372 R-GPELREMYLSALLEKP 388 (392)
Q Consensus 372 ~-~~~~~e~ylsai~~Kp 388 (392)
. |....-.+.+.+.||+
T Consensus 269 ~~g~~~~~~~~~~~a~k~ 286 (287)
T PRK12335 269 ENGNRIKLRFATLLAKKV 286 (287)
T ss_pred cCCCeeeeeeeeeccccC
Confidence 3 2222234456777776
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=123.74 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=90.8
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcCC-ccEEEeccCcCCCCCCcccEEE
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRGV-VPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
+...+++++ ||+|||+|.++..+++++..|+++|++. .+.+. +.+.+. +.+.+.+....++ +++||+|+
T Consensus 26 ~~~~~~~~v---LDiGcG~G~~a~~la~~g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~ 99 (195)
T TIGR00477 26 VKTVAPCKT---LDLGCGQGRNSLYLSLAGYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIF 99 (195)
T ss_pred hccCCCCcE---EEeCCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEE
Confidence 334444555 9999999999999999999999955543 33332 223342 4566667666665 35799999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
++.+++++ +...+..++++++|+|||||++++..+..... -.++++.+++. +|+.+.+...
T Consensus 100 ~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~ 170 (195)
T TIGR00477 100 STVVFMFL-QAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEA 170 (195)
T ss_pred EecccccC-CHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecc
Confidence 99999774 55667789999999999999976655432111 11566777776 4899888833
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-13 Score=125.90 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=79.5
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcCC-ccEEEeccCcCCCCCCcccEEEEccc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRGV-VPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
++.+| ||||||-|.++..||+.|..|+|+| ++....+.+. +.++ +.+....++++....++||+|+|+.+
T Consensus 59 ~g~~v---LDvGCGgG~Lse~mAr~Ga~VtgiD--~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV 133 (243)
T COG2227 59 PGLRV---LDVGCGGGILSEPLARLGASVTGID--ASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV 133 (243)
T ss_pred CCCeE---EEecCCccHhhHHHHHCCCeeEEec--CChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhH
Confidence 45666 9999999999999999999999955 4334444332 3332 45777778888766689999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
++|..+++ .+++++.+.+||||.++++....
T Consensus 134 lEHv~dp~---~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 134 LEHVPDPE---SFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred HHccCCHH---HHHHHHHHHcCCCcEEEEecccc
Confidence 99984444 59999999999999999998643
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=123.27 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=71.3
Q ss_pred EEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 240 GLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
|||+|||||.++..+++. +..++| +|++..+.+.+.++. .+++++++.+|+++++||+|++.++++++ .+.+
T Consensus 55 VLDlGcGtG~~~~~l~~~~~~~v~g--vD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~---~d~~ 127 (226)
T PRK05785 55 VLDVAAGKGELSYHFKKVFKYYVVA--LDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHAS---DNIE 127 (226)
T ss_pred EEEEcCCCCHHHHHHHHhcCCEEEE--ECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhcc---CCHH
Confidence 499999999999999987 578888 666556655555543 57889999999999999999999999887 4456
Q ss_pred HHHHHHHHcccCCc
Q 047630 319 FLMFDIYRVLRPGG 332 (392)
Q Consensus 319 ~~L~el~RvLKPGG 332 (392)
++++|++|+|||.+
T Consensus 128 ~~l~e~~RvLkp~~ 141 (226)
T PRK05785 128 KVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHhcCce
Confidence 79999999999953
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=118.70 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=102.3
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
.+..+++.+||+|||.|.++..|+.+.-.++++| +++...+.+.+| ..+.+.++++... .++++||+|+++.+
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavD--is~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVD--ISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEE--S-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEe--CCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence 3557788889999999999999999988888855 533444444433 2478888887664 47899999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc----ccch--HHHHHHHHHHcCCeEEEEEEeeccCCCCcccceee
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV----GAQL--EDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYL 381 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~----~~~l--~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~yl 381 (392)
++++.+.+++..++..+.+.|+|||.|++.++... ++.. .+.+.+++.+. +..|.-..-. +...+|-.+
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~----~~~~~~~~~ 190 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECR----GGSPNEDCL 190 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-----SSTTSEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEc----CCCCCCceE
Confidence 98877778889999999999999999999986321 1111 55577777775 5544433222 223456666
Q ss_pred EEEEEcCCCCC
Q 047630 382 SALLEKPFLDA 392 (392)
Q Consensus 382 sai~~Kp~~~~ 392 (392)
.+.|+||++.+
T Consensus 191 ~~~~~~~~~~~ 201 (201)
T PF05401_consen 191 LARFRNPVSAS 201 (201)
T ss_dssp EEEEE--SSS-
T ss_pred eeeecCCcCCC
Confidence 79999998764
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=118.61 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=76.8
Q ss_pred EEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 240 GLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
|||+|||+|.++..+++. +..++| +|++..+.+.+.++ ..+.+.++++.. |+++++||+|++..+++|+ +++.
T Consensus 47 VLDiGCG~G~~~~~L~~~~~~~~v~g--iDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl-~p~~ 122 (204)
T TIGR03587 47 ILELGANIGMNLAALKRLLPFKHIYG--VEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHI-NPDN 122 (204)
T ss_pred EEEEecCCCHHHHHHHHhCCCCeEEE--EECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhC-CHHH
Confidence 499999999999999885 678888 55544555555443 236788888877 8889999999999999996 5677
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecc
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+.+++++++|++ ++++++.+++.
T Consensus 123 ~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 123 LPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHhhc--CcEEEEEEeeC
Confidence 889999999998 57888887654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.7e-13 Score=125.42 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=74.3
Q ss_pred EEEEcCCcchHHHHHHH----cCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMME----RNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~----~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
|||||||+|..+..+++ .+.++++ +|++..+.+.+.++ + .+.++++++..++++ .+|+|+++.++
T Consensus 60 vLDlGcGtG~~~~~l~~~~~~~~~~v~g--vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l 135 (247)
T PRK15451 60 VYDLGCSLGAATLSVRRNIHHDNCKIIA--IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL 135 (247)
T ss_pred EEEEcccCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHH
Confidence 49999999999988876 3567777 55645555543332 2 378889998888764 48999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
|++ ++.....++++++|+|||||.|++.+.+
T Consensus 136 ~~l-~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 136 QFL-EPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HhC-CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 885 4555678999999999999999998743
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=124.66 Aligned_cols=130 Identities=22% Similarity=0.327 Sum_probs=94.6
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc-CC--EEEEEecCCCchhHHHHHhc----C--CccEEEeccCcCCCCCCccc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER-NI--TIVTTSMNLNGPFNNFIASR----G--VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~--~vvg~~iD~~a~~~~~aa~r----g--~i~~~~~d~~~Lpf~d~sFD 300 (392)
.+.++.+| ||+|||+|..+..+++. +. .+++ +|++..+.+.+.++ + .+.+..++++.+++++++||
T Consensus 74 ~~~~g~~V---LDiG~G~G~~~~~~a~~~g~~~~v~g--vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 74 ELKPGETV---LDLGSGGGFDCFLAARRVGPTGKVIG--VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred cCCCCCEE---EEeCCCCCHHHHHHHHHhCCCCEEEE--ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCcee
Confidence 34555555 99999999987766653 43 5777 55644444433332 2 36778899999999889999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------------------chHHHHHHHHHHcCCeE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------------------QLEDVYVPLIESVGFNK 361 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------------------~l~~~l~~ll~~aGf~~ 361 (392)
+|++..+++++. +...++++++|+|||||+|++.++..... ...+++.++++++||..
T Consensus 149 ~Vi~~~v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 149 VIISNCVINLSP---DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred EEEEcCcccCCC---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 999999998763 34469999999999999999987543211 11456889999999999
Q ss_pred EEEEEe
Q 047630 362 LKWVVG 367 (392)
Q Consensus 362 i~w~~~ 367 (392)
++....
T Consensus 226 v~i~~~ 231 (272)
T PRK11873 226 ITIQPK 231 (272)
T ss_pred eEEEec
Confidence 876543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=126.12 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=87.8
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHH----HHHhcCC---ccEEEeccCcCCCCCCcccE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNN----FIASRGV---VPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~~Lpf~d~sFDl 301 (392)
.+.++.+| ||||||.|.++.+++++ |++|+|++++. ...+ .+.+.|+ +.+...|..+++. +||.
T Consensus 59 ~l~~G~~v---LDiGcGwG~~~~~~a~~~g~~v~gitlS~--~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~ 130 (273)
T PF02353_consen 59 GLKPGDRV---LDIGCGWGGLAIYAAERYGCHVTGITLSE--EQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDR 130 (273)
T ss_dssp T--TT-EE---EEES-TTSHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SE
T ss_pred CCCCCCEE---EEeCCCccHHHHHHHHHcCcEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCE
Confidence 46677777 99999999999999997 99999966543 3333 3344453 6778888777654 8999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc---------------------cch--HHHHHHHHHHcC
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------------------AQL--EDVYVPLIESVG 358 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------------------~~l--~~~l~~ll~~aG 358 (392)
|++..++.|+ .+...+.+++++.++|||||++++..+.... ..+ ..++...+++.|
T Consensus 131 IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~ 209 (273)
T PF02353_consen 131 IVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG 209 (273)
T ss_dssp EEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT
T ss_pred EEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC
Confidence 9999999995 5567788999999999999999887653211 111 555777889999
Q ss_pred CeEEEEEEe
Q 047630 359 FNKLKWVVG 367 (392)
Q Consensus 359 f~~i~w~~~ 367 (392)
|++..|...
T Consensus 210 l~v~~~~~~ 218 (273)
T PF02353_consen 210 LEVEDVENL 218 (273)
T ss_dssp -EEEEEEE-
T ss_pred EEEEEEEEc
Confidence 999988744
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-11 Score=116.07 Aligned_cols=122 Identities=22% Similarity=0.339 Sum_probs=90.8
Q ss_pred EEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhc-------CCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASR-------GVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~r-------g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
+|||+|||+|.++..+++.+ .+++++| ++....+.+.++ ..+.+..++...+++.+++||+|++.+++
T Consensus 54 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 54 KVLDLACGTGDLAIALAKAVGKTGEVVGLD--FSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCCeEEEEe--CCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 34999999999999998854 6788855 433333332222 23678888888888878899999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc---------------------------------------hHHH
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------------------------------------LEDV 349 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------------------------------------l~~~ 349 (392)
+++ .+...++.++.++|+|||.+++.++...... ..++
T Consensus 132 ~~~---~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T PRK00216 132 RNV---PDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE 208 (239)
T ss_pred ccC---CCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence 887 3455799999999999999988765322110 1355
Q ss_pred HHHHHHHcCCeEEEEE
Q 047630 350 YVPLIESVGFNKLKWV 365 (392)
Q Consensus 350 l~~ll~~aGf~~i~w~ 365 (392)
+.++++++||+.+...
T Consensus 209 ~~~~l~~aGf~~~~~~ 224 (239)
T PRK00216 209 LAAMLEEAGFERVRYR 224 (239)
T ss_pred HHHHHHhCCCceeeee
Confidence 8889999999998776
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-12 Score=124.29 Aligned_cols=128 Identities=23% Similarity=0.292 Sum_probs=94.2
Q ss_pred EEEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhHH-H-HHhc--C-Ccc-EEE-eccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFNN-F-IASR--G-VVP-LYI-SISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~~-~-aa~r--g-~i~-~~~-~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
+|||||||.|+++.+|+.+|+. |+| +|.+..... + +.++ | ... +.. ..++++|. .++||+|+|..+|.|
T Consensus 118 ~VLDIGC~nGY~~frM~~~GA~~ViG--iDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 118 RVLDIGCNNGYYSFRMLGRGAKSVIG--IDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred EEEEecCCCcHHHHHHhhcCCCEEEE--ECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence 3499999999999999999985 777 566444332 1 1111 1 112 223 35788887 789999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccch--------------------HHHHHHHHHHcCCeEEEEEEeecc
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL--------------------EDVYVPLIESVGFNKLKWVVGRKL 370 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l--------------------~~~l~~ll~~aGf~~i~w~~~~k~ 370 (392)
..++- ..|.++...|+|||.+++....-..++. ...+..+++++||+.++...+..+
T Consensus 195 rr~Pl---~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~T 271 (315)
T PF08003_consen 195 RRSPL---DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPT 271 (315)
T ss_pred cCCHH---HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCccC
Confidence 75555 4899999999999999988764322211 666999999999999998876655
Q ss_pred CC
Q 047630 371 DR 372 (392)
Q Consensus 371 d~ 372 (392)
+.
T Consensus 272 t~ 273 (315)
T PF08003_consen 272 TI 273 (315)
T ss_pred CH
Confidence 44
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=120.29 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=90.9
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
.|||||||+|.++..+++. +.+++++| ++......+.+ .+ .+.++..|....+++ ++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid--~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYT--ISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 4699999999999999885 46777755 43344333222 22 367888888766664 5899999999999
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeecccc----c--------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG----A--------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~----~--------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
|+. +...++++++++|||||++++.++.... . ....+|.++++++||+.++....
T Consensus 79 ~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 79 HIK---DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred hCC---CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 873 3457999999999999999988764211 0 01456889999999999887643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=8e-13 Score=109.52 Aligned_cols=99 Identities=17% Similarity=0.299 Sum_probs=74.3
Q ss_pred CCcccEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHHHHh----c---CCccEEEecc-CcCCCCCCcccEEE
Q 047630 234 PGTIRIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNFIAS----R---GVVPLYISIS-QRLPFFDNTLDIVH 303 (392)
Q Consensus 234 ~~~ir~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~aa~----r---g~i~~~~~d~-~~Lpf~d~sFDlV~ 303 (392)
+++| ||||||+|.++..+++ .+.+++++|+| +.+.+.+.+ . ..+.++++|+ ..... .+.||+|+
T Consensus 2 ~~~v---LDlGcG~G~~~~~l~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~ 75 (112)
T PF12847_consen 2 GGRV---LDLGCGTGRLSIALARLFPGARVVGVDIS--PEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVI 75 (112)
T ss_dssp TCEE---EEETTTTSHHHHHHHHHHTTSEEEEEESS--HHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEE
T ss_pred CCEE---EEEcCcCCHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEE
Confidence 4455 9999999999999999 88999995544 444442222 2 2478899998 33333 45699999
Q ss_pred Ecc-cccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 304 SMH-VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 304 s~~-~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+.. +++++.+.+..+.+++++.+.|+|||+|++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999 56554444667789999999999999999874
|
... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-12 Score=118.39 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=89.2
Q ss_pred HHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchh-HHH-HHhcCC-ccEEEeccCcCCCCCCcccEE
Q 047630 226 DEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPF-NNF-IASRGV-VPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 226 ~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~-~~~-aa~rg~-i~~~~~d~~~Lpf~d~sFDlV 302 (392)
.+.....+.+++ ||+|||.|+.+.+|+++|.+|+++|++..+.. ... +.++++ +...+.|.....++ +.||+|
T Consensus 23 ~~a~~~~~~g~~---LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 23 LEAVPLLKPGKA---LDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp HHHCTTS-SSEE---EEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HHHHhhcCCCcE---EEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEE
Confidence 334445555666 99999999999999999999999665542211 123 333443 56678888887764 679999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc-----h-----HHHHHHHHHHcCCeEEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ-----L-----EDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~-----l-----~~~l~~ll~~aGf~~i~w~ 365 (392)
++..++++ .+++.+..+++.+...++|||++++..+....+- . +.++...+. |+++++..
T Consensus 99 ~st~v~~f-L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~ 168 (192)
T PF03848_consen 99 VSTVVFMF-LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYN 168 (192)
T ss_dssp EEESSGGG-S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEE
T ss_pred EEEEEecc-CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEE
Confidence 99888876 5778888999999999999999988765432210 0 344565555 48887753
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=115.58 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=92.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhc-----CCccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASR-----GVVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~r-----g~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+.++.+| ||+|||+|.++..+++.. ..+++ +|++......+.++ ..+.+..+|...+++.+++||+|
T Consensus 17 ~~~~~~v---LdiG~G~G~~~~~~a~~~~~~~~v~~--~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 91 (241)
T PRK08317 17 VQPGDRV---LDVGCGPGNDARELARRVGPEGRVVG--IDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAV 91 (241)
T ss_pred CCCCCEE---EEeCCCCCHHHHHHHHhcCCCcEEEE--EeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEE
Confidence 4444444 999999999999998853 46777 45534444444333 13678888888888888999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc------c-c-----------------cchHHHHHHHHHHcC
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC------V-G-----------------AQLEDVYVPLIESVG 358 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~------~-~-----------------~~l~~~l~~ll~~aG 358 (392)
++..+++++.+ ...+++++.++|||||.+++.+... . . ......+.++++++|
T Consensus 92 ~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 168 (241)
T PRK08317 92 RSDRVLQHLED---PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAG 168 (241)
T ss_pred EEechhhccCC---HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcC
Confidence 99999998743 4569999999999999998875311 0 0 011345888999999
Q ss_pred CeEEEEEE
Q 047630 359 FNKLKWVV 366 (392)
Q Consensus 359 f~~i~w~~ 366 (392)
|..+....
T Consensus 169 f~~~~~~~ 176 (241)
T PRK08317 169 LTDIEVEP 176 (241)
T ss_pred CCceeEEE
Confidence 98876543
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=120.82 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=74.0
Q ss_pred EEEEcCCcchHHHHHHHc----CCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMMER----NITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~----g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
|||+|||+|.++..+++. +..++| +|++..+...+.++ + .+.++++|+..++++ .+|+|++.+++
T Consensus 57 iLDlGcG~G~~~~~l~~~~~~p~~~v~g--vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l 132 (239)
T TIGR00740 57 VYDLGCSRGAATLSARRNINQPNVKIIG--IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTL 132 (239)
T ss_pred EEEecCCCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecch
Confidence 499999999999988873 567888 55544454433322 1 367889999988865 48999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
|++ ++.+...++++++|+|||||.|++.+.+
T Consensus 133 ~~~-~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 133 QFL-PPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 885 4455678999999999999999998753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-13 Score=108.54 Aligned_cols=90 Identities=26% Similarity=0.402 Sum_probs=71.2
Q ss_pred EEEEcCCcchHHHHHHHcC-----CEEEEEecCCCchhHHHHHhcC-----CccEEEeccCcCCCCCCcccEEEEccc-c
Q 047630 240 GLDIGGGVATFAVRMMERN-----ITIVTTSMNLNGPFNNFIASRG-----VVPLYISISQRLPFFDNTLDIVHSMHV-L 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g-----~~vvg~~iD~~a~~~~~aa~rg-----~i~~~~~d~~~Lpf~d~sFDlV~s~~~-l 308 (392)
|||+|||+|..+..+.+.. ..+++ +|++..+...++++. .+.++++|+.++++.+++||+|++... +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~g--vD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIG--VDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEE--EES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEE--EECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 5999999999999999863 67777 555455555554443 478999999999998999999999655 8
Q ss_pred cccCCchhHHHHHHHHHHcccCCc
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGG 332 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG 332 (392)
+| .+++.++.+++++.++|||||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 77 677888999999999999998
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-11 Score=114.37 Aligned_cols=136 Identities=12% Similarity=0.084 Sum_probs=88.9
Q ss_pred HHHHHHHH--HhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHH----HHHhcCCccEEEeccCc-
Q 047630 221 LDFSIDEV--LATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNN----FIASRGVVPLYISISQR- 291 (392)
Q Consensus 221 ~~~lI~~l--l~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~----~aa~rg~i~~~~~d~~~- 291 (392)
...++..+ +.+.++.+| ||+|||+|.++..+++.. -.|+++ |++..+.+ .+.++..+.++.+|...
T Consensus 58 ~~~ll~~~~~l~i~~g~~V---lD~G~G~G~~~~~la~~v~~g~V~av--D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~ 132 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKV---LYLGAASGTTVSHVSDIVEEGVVYAV--EFAPRPMRELLEVAEERKNIIPILADARKP 132 (226)
T ss_pred HHHHHhhHhhCCCCCCCEE---EEEccCCCHHHHHHHHhcCCCeEEEE--ECCHHHHHHHHHHhhhcCCcEEEECCCCCc
Confidence 33444434 455566666 999999999999999853 468884 45343333 33333346778888654
Q ss_pred ---CCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE------eecccccchHHHHHHHHHHcCCeEE
Q 047630 292 ---LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD------HFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 292 ---Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~------~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
.++ .++||+|++... ++.....+++++.|+|||||.|++. ++........+...++++++||+.+
T Consensus 133 ~~~~~l-~~~~D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 133 ERYAHV-VEKVDVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred chhhhc-cccCCEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 122 356999986422 2223345789999999999999993 3333322333445689999999999
Q ss_pred EEEEe
Q 047630 363 KWVVG 367 (392)
Q Consensus 363 ~w~~~ 367 (392)
++...
T Consensus 207 ~~~~l 211 (226)
T PRK04266 207 EVVDL 211 (226)
T ss_pred EEEcC
Confidence 98844
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-11 Score=112.36 Aligned_cols=122 Identities=20% Similarity=0.357 Sum_probs=91.3
Q ss_pred EEEEEcCCcchHHHHHHHcCC---EEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI---TIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~---~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
+|||+|||+|.++..+++... ++++ +|++......+.++ ..+.+..++..++++.+++||+|++.+++++.
T Consensus 42 ~vldiG~G~G~~~~~~~~~~~~~~~~~~--iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 42 KVLDVACGTGDLAIELAKSAPDRGKVTG--VDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred eEEEeCCCCChhHHHHHHhcCCCceEEE--EECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence 349999999999999998654 6777 45533444433332 23678889988888888899999999999876
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccc---------------------------------------hHHHHHH
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------------------------------------LEDVYVP 352 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------------------------------------l~~~l~~ 352 (392)
.+...+++++.++|+|||++++.++...... ..+++.+
T Consensus 120 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (223)
T TIGR01934 120 ---TDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAA 196 (223)
T ss_pred ---ccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHH
Confidence 3455799999999999999988765332110 1355888
Q ss_pred HHHHcCCeEEEEE
Q 047630 353 LIESVGFNKLKWV 365 (392)
Q Consensus 353 ll~~aGf~~i~w~ 365 (392)
+++++||+.+..+
T Consensus 197 ~l~~aGf~~~~~~ 209 (223)
T TIGR01934 197 MLKEAGFEEVRYR 209 (223)
T ss_pred HHHHcCCccceee
Confidence 9999999987655
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=114.54 Aligned_cols=122 Identities=21% Similarity=0.265 Sum_probs=89.4
Q ss_pred cEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHHHHHhcC--CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 238 RIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNNFIASRG--VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~~aa~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
..|||+|||+|.++..+++.+. .+++ +|++......+.++. .+.++.+|...+++++++||+|++..++++..
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~--~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIA--LDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEE--EeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc-
Confidence 3459999999999999999764 4566 555444444443332 36788999999999899999999999998863
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeeccccc--------------chHHHHHHHHHHcCCeEEEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+...++.++.++|||||.+++..+....- ...+.+.+++.+. |+.+.+.
T Consensus 113 --~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 113 --DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 34579999999999999999886533210 0134577778777 7766554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=120.24 Aligned_cols=123 Identities=17% Similarity=0.270 Sum_probs=87.8
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
+.|||||||+|.++..++++.+.+.++.+|. +...+. +.+.+ .++++.+|....++++ +|+|++.+++|+
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~ 227 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYS 227 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhc
Confidence 3459999999999999999754433333555 333332 23333 3678888987666643 699999999988
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccc------------------------hHHHHHHHHHHcCCeEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ------------------------LEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~------------------------l~~~l~~ll~~aGf~~i~w 364 (392)
|.+ +....++++++++|||||++++.++...... ..++|.++++++||+.++.
T Consensus 228 ~~~-~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 228 ANE-QLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred CCh-HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence 743 4446799999999999999988876321110 0467999999999998864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-11 Score=112.80 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=88.7
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH-HHhcC-----------------CccEEEeccCcCCC
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF-IASRG-----------------VVPLYISISQRLPF 294 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~-aa~rg-----------------~i~~~~~d~~~Lpf 294 (392)
+++++ ||+|||.|..+..|+++|.+|+|+|++. ...+. +++.+ .++++++|+..++.
T Consensus 34 ~~~rv---Ld~GCG~G~da~~LA~~G~~V~gvD~S~--~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 34 AGARV---FVPLCGKSLDLAWLAEQGHRVLGVELSE--IAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCeE---EEeCCCchhHHHHHHhCCCeEEEEeCCH--HHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 44556 9999999999999999999999955443 33332 22221 26778889888764
Q ss_pred C-CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--------chHHHHHHHHHHcCCeEEEEE
Q 047630 295 F-DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 295 ~-d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
. .+.||.|+...+++|+ +++..+.+++.+.++|||||++++..+..... -..+++.+.+.. +|......
T Consensus 109 ~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred ccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcC-CceEEEEe
Confidence 2 4679999999888884 67777889999999999999876665532111 115557766653 35554444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=108.24 Aligned_cols=95 Identities=20% Similarity=0.360 Sum_probs=74.7
Q ss_pred EEEEcCCcchHHHHHHH-c--CCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCC--CCCCcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMME-R--NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLP--FFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~-~--g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lp--f~d~sFDlV~s~~~l 308 (392)
|||+|||+|.++..+++ . +.+++|+| ++..+.+.+.+ .+ .++++++|+.+++ +. +.||+|++..++
T Consensus 7 iLDlGcG~G~~~~~l~~~~~~~~~i~gvD--~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l 83 (152)
T PF13847_consen 7 ILDLGCGTGRLLIQLAKELNPGAKIIGVD--ISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVL 83 (152)
T ss_dssp EEEET-TTSHHHHHHHHHSTTTSEEEEEE--SSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTG
T ss_pred EEEecCcCcHHHHHHHHhcCCCCEEEEEE--CcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCch
Confidence 49999999999999994 3 67888855 54455543333 33 3789999999887 65 899999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+++ .+...+++++.++||+||.+++.++.
T Consensus 84 ~~~---~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 84 HHF---PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGT---SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhc---cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 887 44457999999999999999999876
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=118.83 Aligned_cols=131 Identities=24% Similarity=0.308 Sum_probs=98.4
Q ss_pred HHHhhCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHH----HHHhcCC---ccEEEeccCcCCCCCCc
Q 047630 227 EVLATKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNN----FIASRGV---VPLYISISQRLPFFDNT 298 (392)
Q Consensus 227 ~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~~Lpf~d~s 298 (392)
+.+.+.+|.++ ||||||.|.++.+++++ +++|+|++++. .... .++++|. +++...|..++. +.
T Consensus 66 ~kl~L~~G~~l---LDiGCGWG~l~~~aA~~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~ 137 (283)
T COG2230 66 EKLGLKPGMTL---LDIGCGWGGLAIYAAEEYGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EP 137 (283)
T ss_pred HhcCCCCCCEE---EEeCCChhHHHHHHHHHcCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEeccccccc---cc
Confidence 34557788888 99999999999999996 79999976654 3332 3455563 456666666553 45
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-----------------cch--HHHHHHHHHHcCC
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----------------AQL--EDVYVPLIESVGF 359 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----------------~~l--~~~l~~ll~~aGf 359 (392)
||-|++...++|+ ..+....+++.++++|+|||.+++..+.... ..+ ..++.+..+++||
T Consensus 138 fDrIvSvgmfEhv-g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~ 216 (283)
T COG2230 138 FDRIVSVGMFEHV-GKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGF 216 (283)
T ss_pred cceeeehhhHHHh-CcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCc
Confidence 9999999999996 4455678999999999999999877654333 122 3667777899999
Q ss_pred eEEEEEE
Q 047630 360 NKLKWVV 366 (392)
Q Consensus 360 ~~i~w~~ 366 (392)
.+..|..
T Consensus 217 ~v~~~~~ 223 (283)
T COG2230 217 VVLDVES 223 (283)
T ss_pred EEehHhh
Confidence 9888763
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=111.75 Aligned_cols=141 Identities=18% Similarity=0.215 Sum_probs=90.1
Q ss_pred cHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcc
Q 047630 220 GLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 220 ~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sF 299 (392)
.++.+|+.+....+. .+|-|+|||.+.+|..+. .+.+|.. .|+.+. + -.++..|+.++|+++++.
T Consensus 59 Pvd~iI~~l~~~~~~---~viaD~GCGdA~la~~~~-~~~~V~S--fDLva~-------n--~~Vtacdia~vPL~~~sv 123 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKS---LVIADFGCGDAKLAKAVP-NKHKVHS--FDLVAP-------N--PRVTACDIANVPLEDESV 123 (219)
T ss_dssp HHHHHHHHHCTS-TT---S-EEEES-TT-HHHHH---S---EEE--EESS-S-------S--TTEEES-TTS-S--TT-E
T ss_pred cHHHHHHHHHhcCCC---EEEEECCCchHHHHHhcc-cCceEEE--eeccCC-------C--CCEEEecCccCcCCCCce
Confidence 478888887644332 235999999999997754 5567877 444121 1 257788999999999999
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccce
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREM 379 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ 379 (392)
|+|++..+|.. .++..++.|+.|+|||||.|+|.+....-++. +.+.+.++..||+...-. ..+..
T Consensus 124 Dv~VfcLSLMG----Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~-~~F~~~~~~~GF~~~~~d---------~~n~~ 189 (219)
T PF05148_consen 124 DVAVFCLSLMG----TNWPDFIREANRVLKPGGILKIAEVKSRFENV-KQFIKALKKLGFKLKSKD---------ESNKH 189 (219)
T ss_dssp EEEEEES---S----S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-H-HHHHHHHHCTTEEEEEEE-----------STT
T ss_pred eEEEEEhhhhC----CCcHHHHHHHHheeccCcEEEEEEecccCcCH-HHHHHHHHHCCCeEEecc---------cCCCe
Confidence 99999988866 45567999999999999999999987766666 448888999999988643 12345
Q ss_pred eeEEEEEcCC
Q 047630 380 YLSALLEKPF 389 (392)
Q Consensus 380 ylsai~~Kp~ 389 (392)
|+...++|..
T Consensus 190 F~~f~F~K~~ 199 (219)
T PF05148_consen 190 FVLFEFKKIR 199 (219)
T ss_dssp EEEEEEEE-S
T ss_pred EEEEEEEEcC
Confidence 5556777753
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=127.70 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=93.9
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccC--cCCCCCCcccEEEEcccccccC
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQ--RLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~--~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
.|||||||+|.++..+++.+.+++++| ++..+.+.+.+. ..+.++++|+. .+++++++||+|++..+++|+
T Consensus 40 ~vLDlGcG~G~~~~~la~~~~~v~giD--~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l- 116 (475)
T PLN02336 40 SVLELGAGIGRFTGELAKKAGQVIALD--FIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL- 116 (475)
T ss_pred EEEEeCCCcCHHHHHHHhhCCEEEEEe--CCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC-
Confidence 459999999999999999888898855 534444433322 13678888875 567888999999999999886
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeeccccc------------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
++..+..++++++|+|||||++++.+...... .....|.+++.++||........
T Consensus 117 ~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 183 (475)
T PLN02336 117 SDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSF 183 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEE
Confidence 44556789999999999999998876322111 11567999999999877655433
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-11 Score=112.13 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=84.4
Q ss_pred cEEEEEcCCcchHHHHHHH----cC--CEEEEEecCCCchhHHHHHhcC---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMME----RN--ITIVTTSMNLNGPFNNFIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~----~g--~~vvg~~iD~~a~~~~~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
..|||+|||+|.++..|++ .+ .+++| +|++..+.+.+.++. .+.+.+.+...+++.+++||+|++++++
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTA--IDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEE--EcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 3459999999999888875 34 36777 666555555444431 2567777777788778899999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeeccc----------------------ccc-------hHHHHHHHHHHcCC
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV----------------------GAQ-------LEDVYVPLIESVGF 359 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~----------------------~~~-------l~~~l~~ll~~aGf 359 (392)
||+.+ +.+..++++++|++| |.+++.++... +.. ..+++.+++++ ||
T Consensus 140 hh~~d-~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 140 HHLDD-AEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred ecCCh-HHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 99744 446789999999998 45545443211 000 15678888888 99
Q ss_pred eEEE
Q 047630 360 NKLK 363 (392)
Q Consensus 360 ~~i~ 363 (392)
++..
T Consensus 216 ~~~~ 219 (232)
T PRK06202 216 RVER 219 (232)
T ss_pred eEEe
Confidence 8654
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=105.50 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=90.8
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcC-CccEEEeccCcCCCCCC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRG-VVPLYISISQRLPFFDN 297 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg-~i~~~~~d~~~Lpf~d~ 297 (392)
.++...+...+++++ ||+|||+|.++..+++.+.+++++|++. .+.+.+. ..+ .+.++.+|....+ .+
T Consensus 9 ~~l~~~l~~~~~~~v---LdlG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~ 81 (179)
T TIGR00537 9 LLLEANLRELKPDDV---LEIGAGTGLVAIRLKGKGKCILTTDINP--FAVKELRENAKLNNVGLDVVMTDLFKGV--RG 81 (179)
T ss_pred HHHHHHHHhcCCCeE---EEeCCChhHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEccccccc--CC
Confidence 344444444444555 9999999999999999888888855443 4333222 222 2566777765543 45
Q ss_pred cccEEEEcccccccCCc------------------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCC
Q 047630 298 TLDIVHSMHVLSNWIPT------------------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGF 359 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~------------------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf 359 (392)
+||+|+++..+++..+. ..++.++.++.|+|||||.+++....... ...+.+.+++.||
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~---~~~~~~~l~~~gf 158 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG---EPDTFDKLDERGF 158 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC---hHHHHHHHHhCCC
Confidence 89999999877654321 12467899999999999999887654332 2347778999999
Q ss_pred eEEEEE
Q 047630 360 NKLKWV 365 (392)
Q Consensus 360 ~~i~w~ 365 (392)
......
T Consensus 159 ~~~~~~ 164 (179)
T TIGR00537 159 RYEIVA 164 (179)
T ss_pred eEEEEE
Confidence 876654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-11 Score=111.64 Aligned_cols=123 Identities=14% Similarity=0.173 Sum_probs=89.5
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
..|||+|||+|.++..+++.+..++|+|++ ..+...+.++ + .+.+.++++..++ ++||+|++..+++|
T Consensus 57 ~~vLDiGcG~G~~~~~la~~~~~v~gvD~s--~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKRGAIVKAVDIS--EQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIH 131 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHh
Confidence 345999999999999999998899885544 3444333322 2 3678888887765 78999999999988
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeec-------------cccc-------chHHHHHHHHHHcCCeEEEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFF-------------CVGA-------QLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~-------------~~~~-------~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
+ ++..+..+++++.+++++|+++.+.... .... -..+++.++++++||+++.-..
T Consensus 132 ~-~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 132 Y-PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred C-CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 5 4456778999999999988777654211 0000 0156799999999999987653
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-11 Score=115.00 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=72.0
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
.|||||||+|.++..+++. +..+++ +|++..+...+.++. .+.++.+|...+. ++++||+|+++.+++++.
T Consensus 34 ~vLDiGcG~G~~~~~la~~~~~~~v~g--vD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~--- 107 (258)
T PRK01683 34 YVVDLGCGPGNSTELLVERWPAARITG--IDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLP--- 107 (258)
T ss_pred EEEEEcccCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCC---
Confidence 3499999999999999985 467888 555444444444432 3678888887765 456999999999998763
Q ss_pred hHHHHHHHHHHcccCCcEEEEEe
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+...+++++.++|||||.+++..
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEC
Confidence 34579999999999999998863
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-11 Score=117.22 Aligned_cols=118 Identities=12% Similarity=0.141 Sum_probs=86.2
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC------------CccEEEeccCcCCCCCCcccEEEEccc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG------------VVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg------------~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
|||+|||+|.++..|++.|.+|+| +|++.++.+.+.+.. .+++.+.+.+.+. +.||+|+|+.+
T Consensus 93 ilDvGCGgGLLSepLArlga~V~G--ID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsev 167 (282)
T KOG1270|consen 93 ILDVGCGGGLLSEPLARLGAQVTG--IDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEV 167 (282)
T ss_pred EEEeccCccccchhhHhhCCeeEe--ecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHH
Confidence 599999999999999999999999 666445544443331 1334444555543 45999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc------------------------cch--HHHHHHHHHHcCCeE
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------------------AQL--EDVYVPLIESVGFNK 361 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------------------------~~l--~~~l~~ll~~aGf~~ 361 (392)
++|..+ +..++..+.+.|||||.++++...... +.. +.++..+++..++.+
T Consensus 168 leHV~d---p~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282)
T KOG1270|consen 168 LEHVKD---PQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282)
T ss_pred HHHHhC---HHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcch
Confidence 999844 445999999999999999998753211 111 666888888888777
Q ss_pred EEEE
Q 047630 362 LKWV 365 (392)
Q Consensus 362 i~w~ 365 (392)
..|.
T Consensus 245 ~~v~ 248 (282)
T KOG1270|consen 245 NDVV 248 (282)
T ss_pred hhhh
Confidence 6665
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=106.44 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=90.9
Q ss_pred EEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhcCCccEEEeccCc-C-CCCCCcccEEEEcccccccCCchh
Q 047630 240 GLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASRGVVPLYISISQR-L-PFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~-L-pf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
|||+|||+|.++..+++. +..+++ +|++..+.+.+.+++ ++++++++.. + ++++++||+|+++.+++|+.+
T Consensus 17 iLDiGcG~G~~~~~l~~~~~~~~~g--iD~s~~~i~~a~~~~-~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d--- 90 (194)
T TIGR02081 17 VLDLGCGDGELLALLRDEKQVRGYG--IEIDQDGVLACVARG-VNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN--- 90 (194)
T ss_pred EEEeCCCCCHHHHHHHhccCCcEEE--EeCCHHHHHHHHHcC-CeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC---
Confidence 499999999999999764 556666 566445545555555 6888888765 4 477889999999999998743
Q ss_pred HHHHHHHHHHcccCCcEEEEEee--------------cc-------c--c-----cchHHHHHHHHHHcCCeEEEEEEee
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHF--------------FC-------V--G-----AQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~--------------~~-------~--~-----~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
...+++++.|+++++. +.+..+ .. . . -...+++.++++++||+.++.....
T Consensus 91 ~~~~l~e~~r~~~~~i-i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 91 PEEILDEMLRVGRHAI-VSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred HHHHHHHHHHhCCeEE-EEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEec
Confidence 4468999999887542 211000 00 0 0 0116679999999999999887665
Q ss_pred ccCCCCccccee
Q 047630 369 KLDRGPELREMY 380 (392)
Q Consensus 369 k~d~~~~~~e~y 380 (392)
.-..+.+...||
T Consensus 170 ~~~~~~~~~~~~ 181 (194)
T TIGR02081 170 VDGRGGREVRWF 181 (194)
T ss_pred cccccccccccC
Confidence 444444444444
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=113.00 Aligned_cols=118 Identities=20% Similarity=0.249 Sum_probs=82.7
Q ss_pred cEEEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhHH--HHHhcCCccE--EEeccCcCCCCC-CcccEEEEccccccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFNN--FIASRGVVPL--YISISQRLPFFD-NTLDIVHSMHVLSNW 311 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~~--~aa~rg~i~~--~~~d~~~Lpf~d-~sFDlV~s~~~l~~~ 311 (392)
++|||+|||+|.+++..++.|+. ++|+|+|.-+.... ++..++ ++. ............ +.||+|+++-.-.
T Consensus 164 ~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~~~~~~~~~~~~DvIVANILA~-- 240 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLLLEVPENGPFDVIVANILAE-- 240 (300)
T ss_pred CEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcC-CchhhhcccccchhhcccCcccEEEehhhHH--
Confidence 34499999999999999999876 99977775332222 333444 331 111122223333 5899999986332
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
-+..+..++.+.|||||+++++...... .+.+.+.+++.||+.+...
T Consensus 241 ----vl~~La~~~~~~lkpgg~lIlSGIl~~q---~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 241 ----VLVELAPDIKRLLKPGGRLILSGILEDQ---AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred ----HHHHHHHHHHHHcCCCceEEEEeehHhH---HHHHHHHHHhCCCeEeEEE
Confidence 2347899999999999999999876644 3447778889999999876
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=117.69 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=88.0
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc--C-CccEEEeccCcCCCCCCcccEEEEc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR--G-VVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r--g-~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.+.++.++ ||||||+|.++..+++. +.+|++ +|++..+.+.+.++ + .+.+...|...+ +++||.|++.
T Consensus 164 ~l~~g~rV---LDIGcG~G~~a~~la~~~g~~V~g--iDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~ 235 (383)
T PRK11705 164 QLKPGMRV---LDIGCGWGGLARYAAEHYGVSVVG--VTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSV 235 (383)
T ss_pred CCCCCCEE---EEeCCCccHHHHHHHHHCCCEEEE--EeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEe
Confidence 34555555 99999999999999984 788888 45544555444443 2 245666676654 4789999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------------ch--HHHHHHHHHHcCCeEEEEE
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------------QL--EDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------------~l--~~~l~~ll~~aGf~~i~w~ 365 (392)
.+++|+ .....+.+++++.|+|||||++++..+..... .+ ..++..+++ .||.+..|.
T Consensus 236 ~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~ 311 (383)
T PRK11705 236 GMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWH 311 (383)
T ss_pred CchhhC-ChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEe
Confidence 999885 44556789999999999999998876432111 11 344555555 588888776
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=108.41 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=88.9
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH-HHhcC-----------------CccEEEeccCcCCC
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF-IASRG-----------------VVPLYISISQRLPF 294 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~-aa~rg-----------------~i~~~~~d~~~Lpf 294 (392)
+++++ ||+|||.|..+..|+++|.+|+|+|++. ...+. +.+++ .+.+.++|+..++.
T Consensus 37 ~~~rv---L~~gCG~G~da~~LA~~G~~V~avD~s~--~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 37 AGSRV---LVPLCGKSLDMLWLAEQGHEVLGVELSE--LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCeE---EEeCCCChHhHHHHHhCCCeEEEEccCH--HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 44555 9999999999999999999999955443 33332 22332 25677888887754
Q ss_pred C-CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEE-Eeeccccc-------chHHHHHHHHHHcCCeEEEEE
Q 047630 295 F-DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL-DHFFCVGA-------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 295 ~-d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii-~~~~~~~~-------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
. ...||+|+...+++++ +++..+.+++.+.++|||||++++ ...+.... -..+++.+.+.. +|++....
T Consensus 112 ~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 112 ADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred ccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence 3 2589999999888885 777788999999999999997544 33332111 115667777753 26666555
Q ss_pred Eee
Q 047630 366 VGR 368 (392)
Q Consensus 366 ~~~ 368 (392)
...
T Consensus 190 ~~~ 192 (218)
T PRK13255 190 RQD 192 (218)
T ss_pred ecc
Confidence 433
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-11 Score=109.96 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=74.0
Q ss_pred EEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHH----HHhcC--Ccc-EEEeccCcCC-CCCCcccEEEEccccccc
Q 047630 241 LDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNF----IASRG--VVP-LYISISQRLP-FFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 241 LDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~----aa~rg--~i~-~~~~d~~~Lp-f~d~sFDlV~s~~~l~~~ 311 (392)
|+||||||..-.++-- ++..|++ +|+++.+.+. ++++. .+. |++++.+.+| ++++++|.|++.+++...
T Consensus 81 LEvgcGtG~Nfkfy~~~p~~svt~--lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv 158 (252)
T KOG4300|consen 81 LEVGCGTGANFKFYPWKPINSVTC--LDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSV 158 (252)
T ss_pred EEecccCCCCcccccCCCCceEEE--eCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEecc
Confidence 9999999997766653 6778877 7775555543 22322 234 8899999998 799999999999999876
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
++..+.|+|+.|+|||||++++.+.
T Consensus 159 ---e~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 159 ---EDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 5555799999999999999977764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=104.04 Aligned_cols=120 Identities=15% Similarity=0.209 Sum_probs=80.6
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCCCCCCcccE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lpf~d~sFDl 301 (392)
.+.++.++ ||+|||+|.++..+++.+ ..++++| ++....+.+. +.+ .+.++.++.. .++ .++||+
T Consensus 28 ~~~~~~~v---LDiG~G~G~~~~~la~~~~~~~v~~vD--~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~ 100 (187)
T PRK08287 28 ELHRAKHL---IDVGAGTGSVSIEAALQFPSLQVTAIE--RNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADA 100 (187)
T ss_pred CCCCCCEE---EEECCcCCHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCE
Confidence 34444444 999999999999998864 4777755 4334333222 222 2566666653 233 457999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
|++.....+ +..++.++.++|||||++++...... + .+.+.+++++.||+.++..
T Consensus 101 v~~~~~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~~~--~-~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 101 IFIGGSGGN------LTAIIDWSLAHLHPGGRLVLTFILLE--N-LHSALAHLEKCGVSELDCV 155 (187)
T ss_pred EEECCCccC------HHHHHHHHHHhcCCCeEEEEEEecHh--h-HHHHHHHHHHCCCCcceEE
Confidence 998765433 35689999999999999988654321 2 2447778999999776644
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.4e-11 Score=110.19 Aligned_cols=120 Identities=19% Similarity=0.165 Sum_probs=83.0
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC--CccEEEecc-CcCC--CCCCcccEEEEcc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISIS-QRLP--FFDNTLDIVHSMH 306 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~-~~Lp--f~d~sFDlV~s~~ 306 (392)
.+|||+|||+|.++..+++. +..++++| ++..+.+.+.+ .+ .+.++++|+ +.++ +++++||+|++.+
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD--~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIE--VHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEE--echHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 34599999999999999885 45677755 54444443322 22 367889998 7776 7788999999876
Q ss_pred cccccCC-----chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 307 VLSNWIP-----TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 307 ~l~~~~~-----~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
....... ....+.++++++++|||||.|++.. ........+.+.+++.|+...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~---~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT---DWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc---CCHHHHHHHHHHHHhCccccc
Confidence 5422111 1123578999999999999998864 234445557778888886443
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.8e-12 Score=101.25 Aligned_cols=89 Identities=22% Similarity=0.363 Sum_probs=50.6
Q ss_pred EEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCcCC-C-CCCcccEEEEcccccc
Q 047630 241 LDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQRLP-F-FDNTLDIVHSMHVLSN 310 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~Lp-f-~d~sFDlV~s~~~l~~ 310 (392)
||||||+|.++..+.+. ..+++++|++. .+.+. ..+.+. ............ . ..++||+|++..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISP--SMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSS--STTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999987 66777755544 44422 222221 122222222221 1 2259999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
+ ++++.++++++++|||||+|
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 8 66678999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-11 Score=107.98 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=95.9
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCC-ccEEEec-cCcCCCCCCcccEEEEc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV-VPLYISI-SQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~-i~~~~~d-~~~Lpf~d~sFDlV~s~ 305 (392)
++.+.. ..-..|||||||+|..+..+.+.|...+| +|++..+.+.+.++.+ -.++.+| .+.+||..++||.|++.
T Consensus 43 LLalp~-~~~~~iLDIGCGsGLSg~vL~~~Gh~wiG--vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 43 LLALPG-PKSGLILDIGCGSGLSGSVLSDSGHQWIG--VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred HhhCCC-CCCcEEEEeccCCCcchheeccCCceEEe--ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEe
Confidence 343443 35566799999999999999999988888 5665566665555432 1466665 57899999999999998
Q ss_pred cccccc--------CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe---EEEE
Q 047630 306 HVLSNW--------IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN---KLKW 364 (392)
Q Consensus 306 ~~l~~~--------~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~---~i~w 364 (392)
.++... .+...+..++..++.+|++|+..++.-+.. .+.-.+.+.....++||. +|.|
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe-n~~q~d~i~~~a~~aGF~GGlvVd~ 188 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE-NEAQIDMIMQQAMKAGFGGGLVVDW 188 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc-chHHHHHHHHHHHhhccCCceeeec
Confidence 777422 234456778889999999999998885444 333345566677778874 5665
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.9e-11 Score=110.87 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=101.2
Q ss_pred cHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcc
Q 047630 220 GLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 220 ~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sF 299 (392)
.++.+|+.+-...... +|-|+|||.+.+|. .....|+. +|+.+ .+ -.++..|+.++|.+|++.
T Consensus 167 Pld~ii~~ik~r~~~~---vIaD~GCGEakiA~---~~~~kV~S--fDL~a-------~~--~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 167 PLDVIIRKIKRRPKNI---VIADFGCGEAKIAS---SERHKVHS--FDLVA-------VN--ERVIACDMRNVPLEDESV 229 (325)
T ss_pred hHHHHHHHHHhCcCce---EEEecccchhhhhh---ccccceee--eeeec-------CC--CceeeccccCCcCccCcc
Confidence 4777887776433222 34999999999886 33445666 44411 11 257788999999999999
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccce
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREM 379 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ 379 (392)
|++++..+|.. .++..++.|++|+||+||.+||.+....-.+... +.+.+...||....-.. .+..
T Consensus 230 DvaV~CLSLMg----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~-f~r~l~~lGF~~~~~d~---------~n~~ 295 (325)
T KOG3045|consen 230 DVAVFCLSLMG----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKG-FVRALTKLGFDVKHKDV---------SNKY 295 (325)
T ss_pred cEEEeeHhhhc----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHH-HHHHHHHcCCeeeehhh---------hcce
Confidence 99999888765 5667899999999999999999998776666654 88899999998765442 2344
Q ss_pred eeEEEEEcCC
Q 047630 380 YLSALLEKPF 389 (392)
Q Consensus 380 ylsai~~Kp~ 389 (392)
|....|+|+.
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 4446677753
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=112.84 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=72.8
Q ss_pred EEEEEcCCcch----HHHHHHHc-------CCEEEEEecCCCchhHHHHHhc----------------------------
Q 047630 239 IGLDIGGGVAT----FAVRMMER-------NITIVTTSMNLNGPFNNFIASR---------------------------- 279 (392)
Q Consensus 239 ~VLDIGCGtG~----~a~~La~~-------g~~vvg~~iD~~a~~~~~aa~r---------------------------- 279 (392)
.|+|+|||+|. ++..+++. +..++|+|+| ..+.+.+.+.
T Consensus 102 ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis--~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 102 RIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID--LKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred EEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC--HHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 45999999996 55556553 3568885544 3444333221
Q ss_pred -----CCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 280 -----GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 280 -----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+.|.++|....++++++||+|+|.++++++ +++....++++++++|+|||+|++.+
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 13678888888888778999999999999886 55666789999999999999999875
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-10 Score=103.84 Aligned_cols=130 Identities=19% Similarity=0.147 Sum_probs=87.9
Q ss_pred EEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 240 GLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
|||+|||+|..+..++. .+.+|+++| ++..+.+ .+.+.+. ++++.++...++. +++||+|++...
T Consensus 49 VLDiGcGtG~~al~la~~~~~~~V~giD--~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~---- 121 (187)
T PRK00107 49 VLDVGSGAGFPGIPLAIARPELKVTLVD--SLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV---- 121 (187)
T ss_pred EEEEcCCCCHHHHHHHHHCCCCeEEEEe--CcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc----
Confidence 49999999999998886 456788854 5334333 2233332 7888999888876 789999998642
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEc
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~K 387 (392)
..++.++++++++|||||++++..... ....+.++.+..|....+.-..+-. .-.++.++ .+.+|
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~ 186 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD----PEEEIAELPKALGGKVEEVIELTLP---GLDGERHL-VIIRK 186 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC----hHHHHHHHHHhcCceEeeeEEEecC---CCCCcEEE-EEEec
Confidence 234569999999999999999886442 2344666778788776544333221 12345555 45665
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-11 Score=111.83 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCc-cEEEeccCcC-C-CCCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVV-PLYISISQRL-P-FFDN 297 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i-~~~~~d~~~L-p-f~d~ 297 (392)
+-..+.+++.....+..+.+||+|||||..+..+..+-....| +|++..+.+.+.++|.. .+.+++...+ + ..++
T Consensus 110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltG--vDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~e 187 (287)
T COG4976 110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTG--VDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQE 187 (287)
T ss_pred cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccC--CchhHHHHHHHHhccchHHHHHHHHHHHhhhccCC
Confidence 3344555554433455888899999999999999998777877 67767777888888852 3445554432 2 4567
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee-cccccc-----------hHHHHHHHHHHcCCeEEEEE
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF-FCVGAQ-----------LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~-~~~~~~-----------l~~~l~~ll~~aGf~~i~w~ 365 (392)
.||+|.+..++..+ ..++.++.-+.+.|+|||.|.++.- .+.+.. -+..++.+++..||+.|..+
T Consensus 188 r~DLi~AaDVl~Yl---G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 188 RFDLIVAADVLPYL---GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred cccchhhhhHHHhh---cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 89999999999888 6667799999999999999988752 111111 15567889999999999887
Q ss_pred Eee
Q 047630 366 VGR 368 (392)
Q Consensus 366 ~~~ 368 (392)
...
T Consensus 265 ~tt 267 (287)
T COG4976 265 DTT 267 (287)
T ss_pred ccc
Confidence 655
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=110.11 Aligned_cols=138 Identities=20% Similarity=0.251 Sum_probs=87.9
Q ss_pred HHHHHHHHhh-CCCCcccEEEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhHHHHHh----cCCccEEEeccCcCCCC
Q 047630 222 DFSIDEVLAT-KKPGTIRIGLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFNNFIAS----RGVVPLYISISQRLPFF 295 (392)
Q Consensus 222 ~~lI~~ll~l-~~~~~ir~VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~~~aa~----rg~i~~~~~d~~~Lpf~ 295 (392)
...++.+... .++.++ ||+|||+|.++..+++.+.. ++++|+| ....+.+.+ ++. . +...++..
T Consensus 107 ~~~l~~l~~~~~~~~~V---LDiGcGsG~l~i~~~~~g~~~v~giDis--~~~l~~A~~n~~~~~~-~----~~~~~~~~ 176 (250)
T PRK00517 107 RLCLEALEKLVLPGKTV---LDVGCGSGILAIAAAKLGAKKVLAVDID--PQAVEAARENAELNGV-E----LNVYLPQG 176 (250)
T ss_pred HHHHHHHHhhcCCCCEE---EEeCCcHHHHHHHHHHcCCCeEEEEECC--HHHHHHHHHHHHHcCC-C----ceEEEccC
Confidence 3344444332 344445 99999999999988887765 8885544 334333322 232 1 11112222
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCc
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPE 375 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~ 375 (392)
+.+||+|+++... ..+..++.++.++|||||++++..+.... .+.+.+.+++.||+.++.. .
T Consensus 177 ~~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lilsgi~~~~---~~~v~~~l~~~Gf~~~~~~---------~ 238 (250)
T PRK00517 177 DLKADVIVANILA------NPLLELAPDLARLLKPGGRLILSGILEEQ---ADEVLEAYEEAGFTLDEVL---------E 238 (250)
T ss_pred CCCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEEECcHhh---HHHHHHHHHHCCCEEEEEE---------E
Confidence 3379999987543 23456899999999999999998765432 3457788999999988654 2
Q ss_pred ccceeeEEEEEcC
Q 047630 376 LREMYLSALLEKP 388 (392)
Q Consensus 376 ~~e~ylsai~~Kp 388 (392)
.++|. ..+++|+
T Consensus 239 ~~~W~-~~~~~~~ 250 (250)
T PRK00517 239 RGEWV-ALVGKKK 250 (250)
T ss_pred eCCEE-EEEEEeC
Confidence 34554 4677774
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=106.72 Aligned_cols=147 Identities=17% Similarity=0.323 Sum_probs=101.5
Q ss_pred EEEEcCCcchHHHHHHHc--C--CEEEEEecCCCchhHHHHHhcC-----CccEEEecc----CcCCCCCCcccEEEEcc
Q 047630 240 GLDIGGGVATFAVRMMER--N--ITIVTTSMNLNGPFNNFIASRG-----VVPLYISIS----QRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g--~~vvg~~iD~~a~~~~~aa~rg-----~i~~~~~d~----~~Lpf~d~sFDlV~s~~ 306 (392)
||+||||.|.....+.+- + ..+++ .|.++...+...++. .+...+.|. ..-|...+++|+|++++
T Consensus 75 ilEvGCGvGNtvfPll~~~~n~~l~v~a--cDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 75 ILEVGCGVGNTVFPLLKTSPNNRLKVYA--CDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred heeeccCCCcccchhhhcCCCCCeEEEE--cCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 499999999988888773 3 45666 666444443333321 122222221 12366789999999999
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc---------------------ccch-----HHHHHHHHHHcCCe
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV---------------------GAQL-----EDVYVPLIESVGFN 360 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~---------------------~~~l-----~~~l~~ll~~aGf~ 360 (392)
+|.. +.++.+..++.+++++|||||.+++.++... ++.. .+++.+++.++||.
T Consensus 153 vLSA-i~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 153 VLSA-IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EEec-cChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 9988 5667778999999999999999999986321 1111 67799999999998
Q ss_pred EEEEEEee----ccCCCCcccceeeEEEEEcCC
Q 047630 361 KLKWVVGR----KLDRGPELREMYLSALLEKPF 389 (392)
Q Consensus 361 ~i~w~~~~----k~d~~~~~~e~ylsai~~Kp~ 389 (392)
.++-.+.. ...++-....+|+.++|+||.
T Consensus 232 ~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 232 EVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL 264 (264)
T ss_pred hhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence 76554333 222234566888899999984
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.6e-11 Score=124.70 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=80.0
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----C-CccEEEeccCcCC--CCCCc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRLP--FFDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~Lp--f~d~s 298 (392)
+....+++++ ||+|||+|.++..+++. +..++| +|++..+.+.+.++ + .+.++++|...+| +++++
T Consensus 413 i~d~~~g~rV---LDIGCGTG~ls~~LA~~~P~~kVtG--IDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 413 ILDYIKGDTI---VDVGAGGGVMLDMIEEETEDKRIYG--IDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred HhhhcCCCEE---EEeCCCCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCC
Confidence 4445555555 99999999999888874 567777 55544444433332 2 2466788888887 78899
Q ss_pred ccEEEEcccccccC----------CchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 299 LDIVHSMHVLSNWI----------PTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 299 FDlV~s~~~l~~~~----------~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
||+|+++.++|++. +...+..++++++|+|||||.+++.+.
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999999998753 235667899999999999999999874
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-10 Score=104.88 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=85.4
Q ss_pred EEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCCCcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d~sFDlV~s~~~l 308 (392)
|||+|||+|.++..++++. ..|+++|++. +. ...+ +.++++|+.+.+ +.+++||+|++..+.
T Consensus 55 VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~---~~---~~~~-v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 55 VVDLGAAPGGWSQYAVTQIGDKGRVIACDILP---MD---PIVG-VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred EEEEcccCCHHHHHHHHHcCCCceEEEEeccc---cc---CCCC-cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 4999999999999998853 4677855432 11 1123 688899988753 667899999998766
Q ss_pred cccCCch--------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCccccee
Q 047630 309 SNWIPTT--------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMY 380 (392)
Q Consensus 309 ~~~~~~~--------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~y 380 (392)
+....+. ..+.+|+++.++|||||.|++..+.. ++..+ +...+++ .|..+++..-.. .+ .+..|.|
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~-~l~~l~~-~f~~v~~~Kp~s-sr-~~s~e~~ 201 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDE-YLREIRS-LFTKVKVRKPDS-SR-ARSREVY 201 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHH-HHHHHHh-CceEEEEECCcc-cc-ccCceeE
Confidence 5432211 12568999999999999999987654 22222 2233332 588887752221 11 2556787
Q ss_pred eEE
Q 047630 381 LSA 383 (392)
Q Consensus 381 lsa 383 (392)
+.+
T Consensus 202 ~~~ 204 (209)
T PRK11188 202 IVA 204 (209)
T ss_pred EEe
Confidence 743
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=101.98 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=112.1
Q ss_pred cccccceeccCCCCcHHHHHHHHHhhCC----CCcccEEEEEcCCcchHHHHHHHcCCE--EEEEecCCCchhH---HHH
Q 047630 206 GVEKIRWTQKKGNGGLDFSIDEVLATKK----PGTIRIGLDIGGGVATFAVRMMERNIT--IVTTSMNLNGPFN---NFI 276 (392)
Q Consensus 206 ~~e~~~w~~~~~~~~~~~lI~~ll~l~~----~~~ir~VLDIGCGtG~~a~~La~~g~~--vvg~~iD~~a~~~---~~a 276 (392)
+.+++-|+.... .+..++.+..... +....+|||+|||.|.+...|++.+.+ .+| +|.+.... +.+
T Consensus 36 gd~GEvWFg~~a---e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~G--vDYs~~AV~LA~ni 110 (227)
T KOG1271|consen 36 GDEGEVWFGEDA---EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTG--VDYSEKAVELAQNI 110 (227)
T ss_pred CCccceecCCcH---HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccc--cccCHHHHHHHHHH
Confidence 567788876443 3444444443222 222235599999999999999997765 455 55532222 244
Q ss_pred HhcC----CccEEEeccCcCCCCCCcccEEEEcccccc-----cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchH
Q 047630 277 ASRG----VVPLYISISQRLPFFDNTLDIVHSMHVLSN-----WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLE 347 (392)
Q Consensus 277 a~rg----~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~-----~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~ 347 (392)
+++. .|+|.+.|+..-.+..+.||+|+--..+.. -.....+...+..+.+.|+|||+|+|.....+.
T Consensus 111 Ae~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~---- 186 (227)
T KOG1271|consen 111 AERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK---- 186 (227)
T ss_pred HHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH----
Confidence 4443 278899998876778889999986554432 122233345788899999999999999765543
Q ss_pred HHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEc
Q 047630 348 DVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 348 ~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~K 387 (392)
+++.+.++..||+.++-........+...+...-++.|++
T Consensus 187 dELv~~f~~~~f~~~~tvp~ptF~FgG~~G~tvt~vaF~~ 226 (227)
T KOG1271|consen 187 DELVEEFENFNFEYLSTVPTPTFMFGGSVGSTVTSVAFLR 226 (227)
T ss_pred HHHHHHHhcCCeEEEEeeccceEEeccccccEEEEEEEec
Confidence 4466788888888887776665554444444444555543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-10 Score=110.43 Aligned_cols=128 Identities=21% Similarity=0.273 Sum_probs=85.7
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH--HHHhcCC-ccEEEeccCcCCCCCCcccEEEEcccccccCCc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN--FIASRGV-VPLYISISQRLPFFDNTLDIVHSMHVLSNWIPT 314 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~--~aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~ 314 (392)
+|||+|||+|.++...++.|+ .|+++|+|..+.... ++..++. ..+.+.... ......||+|+++-...
T Consensus 164 ~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~--~~~~~~~dlvvANI~~~----- 236 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE--DLVEGKFDLVVANILAD----- 236 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS--CTCCS-EEEEEEES-HH-----
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec--ccccccCCEEEECCCHH-----
Confidence 449999999999999999887 689988776332222 4445553 223232222 23358999999986543
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEcC
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKP 388 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp 388 (392)
-+..++..+.++|+|||+|+++.+..... +.+.+.+++ ||+.++.. ..++|. ..+++|.
T Consensus 237 -vL~~l~~~~~~~l~~~G~lIlSGIl~~~~---~~v~~a~~~-g~~~~~~~---------~~~~W~-~l~~~Kk 295 (295)
T PF06325_consen 237 -VLLELAPDIASLLKPGGYLILSGILEEQE---DEVIEAYKQ-GFELVEER---------EEGEWV-ALVFKKK 295 (295)
T ss_dssp -HHHHHHHHCHHHEEEEEEEEEEEEEGGGH---HHHHHHHHT-TEEEEEEE---------EETTEE-EEEEEE-
T ss_pred -HHHHHHHHHHHhhCCCCEEEEccccHHHH---HHHHHHHHC-CCEEEEEE---------EECCEE-EEEEEeC
Confidence 34568899999999999999998876443 336667777 99988766 245655 4677763
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=103.63 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=76.1
Q ss_pred EEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 240 GLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
|||+|||+|.++..++..+ .+|+++| .+..+.+ .+.+.+ .+.++.++++.++ .+++||+|++.. +++
T Consensus 46 vLDiGcGtG~~s~~la~~~~~~~V~~iD--~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 46 VIDIGSGAGFPGIPLAIARPELKLTLLE--SNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS- 120 (181)
T ss_pred EEEecCCCCccHHHHHHHCCCCeEEEEe--CcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC-
Confidence 4999999999999888744 5677744 5333332 223333 2678889988875 367999999865 332
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
++.+++.+.++|||||.+++.+......++.. ..+.+...||+.++-.
T Consensus 121 -----~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~-~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 121 -----LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEE-AKRKCQVLGVEPLEVP 168 (181)
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHH-HHHhhhhcCceEeecc
Confidence 34588999999999999998753222222222 2233344788877654
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-10 Score=103.84 Aligned_cols=125 Identities=17% Similarity=0.169 Sum_probs=92.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCc-C-CCCCCcccEEEEcccc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR-L-PFFDNTLDIVHSMHVL 308 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~-L-pf~d~sFDlV~s~~~l 308 (392)
.++.+| ||+|||.|.+..+|.+ +++.++| ++++.+....+.++| +.++++|++. + .|++++||.|+.+.++
T Consensus 12 ~pgsrV---LDLGCGdG~LL~~L~~~k~v~g~G--vEid~~~v~~cv~rG-v~Viq~Dld~gL~~f~d~sFD~VIlsqtL 85 (193)
T PF07021_consen 12 EPGSRV---LDLGCGDGELLAYLKDEKQVDGYG--VEIDPDNVAACVARG-VSVIQGDLDEGLADFPDQSFDYVILSQTL 85 (193)
T ss_pred CCCCEE---EecCCCchHHHHHHHHhcCCeEEE--EecCHHHHHHHHHcC-CCEEECCHHHhHhhCCCCCccEEehHhHH
Confidence 456666 9999999999999998 7788887 555456677888888 5899998654 4 4889999999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEe--ec--------------cccc----------ch----HHHHHHHHHHcC
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDH--FF--------------CVGA----------QL----EDVYVPLIESVG 358 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~--~~--------------~~~~----------~l----~~~l~~ll~~aG 358 (392)
.+. ...+.+|+|+.|+-| ..+++- |. ...+ ++ -+.++++.++.|
T Consensus 86 Q~~---~~P~~vL~EmlRVgr---~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 86 QAV---RRPDEVLEEMLRVGR---RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred HhH---hHHHHHHHHHHHhcC---eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 997 344468999987744 444332 20 0000 00 556899999999
Q ss_pred CeEEEEEEee
Q 047630 359 FNKLKWVVGR 368 (392)
Q Consensus 359 f~~i~w~~~~ 368 (392)
+++++.....
T Consensus 160 i~I~~~~~~~ 169 (193)
T PF07021_consen 160 IRIEERVFLD 169 (193)
T ss_pred CEEEEEEEEc
Confidence 9999887664
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=102.99 Aligned_cols=98 Identities=21% Similarity=0.200 Sum_probs=76.2
Q ss_pred ecCCCchhHHHHHhc----C-----CccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEE
Q 047630 265 SMNLNGPFNNFIASR----G-----VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 265 ~iD~~a~~~~~aa~r----g-----~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~li 335 (392)
++|++..+.+.+.++ + .++++++|++++|+++++||+|++.++++++ .+...+++|++|+|||||.|+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEEE
Confidence 367756666544322 1 2689999999999999999999999999987 345579999999999999998
Q ss_pred EEeeccccc--------------------------c------------hHHHHHHHHHHcCCeEEEEE
Q 047630 336 LDHFFCVGA--------------------------Q------------LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 336 i~~~~~~~~--------------------------~------------l~~~l~~ll~~aGf~~i~w~ 365 (392)
+.++..... . ..+++.++++++||+.+++.
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 887643211 0 06678889999999998776
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=102.11 Aligned_cols=122 Identities=14% Similarity=0.163 Sum_probs=88.1
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cCC--ccEEEeccCcCCCC-CCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RGV--VPLYISISQRLPFF-DNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg~--i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~ 311 (392)
.|||+|||+|.++..+++.+..++++| ++......+.+ .+. +.+..++...++.. .++||+|++..++++.
T Consensus 48 ~vLdlG~G~G~~~~~l~~~~~~v~~iD--~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 48 RVLDVGCGGGLLSEPLARLGANVTGID--ASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred eEEEECCCCCHHHHHHHhcCCeEEEEe--CCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 349999999999999998888888855 43333332222 232 56777777776654 3789999999999887
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccc--------------------c-c-----hHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG--------------------A-Q-----LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~--------------------~-~-----l~~~l~~ll~~aGf~~i~w~ 365 (392)
. +...++.++.++|+|||.+++....... . . ...++.++++++||+.+...
T Consensus 126 ~---~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 126 P---DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred C---CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 3 4456999999999999999887532110 0 0 13568889999999997654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.1e-10 Score=104.22 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=86.9
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC-CccEEEeccCcCC-CCCCcccEEEEcccccccCC
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG-VVPLYISISQRLP-FFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg-~i~~~~~d~~~Lp-f~d~sFDlV~s~~~l~~~~~ 313 (392)
|||||||+|.++..+++.+..++++| ++......+.+ .+ .+.+...+...++ ..+++||+|++..++++..
T Consensus 52 vLdiG~G~G~~~~~l~~~~~~v~~iD--~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~- 128 (233)
T PRK05134 52 VLDVGCGGGILSESMARLGADVTGID--ASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP- 128 (233)
T ss_pred EEEeCCCCCHHHHHHHHcCCeEEEEc--CCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC-
Confidence 49999999999999999888888854 43344333322 12 2456666666554 3457899999999998873
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeecccc---------------------cc-----hHHHHHHHHHHcCCeEEEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------------------AQ-----LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------------------~~-----l~~~l~~ll~~aGf~~i~w~ 365 (392)
+...+++++.++|+|||.+++....... .. ..+++.++++++||+.+...
T Consensus 129 --~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 129 --DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 3446899999999999999887532100 00 14568999999999988654
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-09 Score=95.91 Aligned_cols=125 Identities=19% Similarity=0.217 Sum_probs=83.9
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcCC----ccEEEeccCcCCCCCCcccEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRGV----VPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg~----i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
.++.++ ||+|||+|.++..+++.+.+++++|++ ......+. ..+. +.+..+|... ++.+++||+|+
T Consensus 22 ~~~~~v---Ld~G~G~G~~~~~l~~~~~~v~~~D~s--~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi 95 (188)
T PRK14968 22 KKGDRV---LEVGTGSGIVAIVAAKNGKKVVGVDIN--PYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVIL 95 (188)
T ss_pred cCCCEE---EEEccccCHHHHHHHhhcceEEEEECC--HHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEE
Confidence 444445 999999999999999998889885544 33433222 2221 5667776554 34556899999
Q ss_pred EcccccccC------------------CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 304 SMHVLSNWI------------------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 304 s~~~l~~~~------------------~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
++..+.... ....+..+++++.++|||||.+++...... ..+.+.++++++||+.....
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~---~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT---GEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC---CHHHHHHHHHHCCCeeeeee
Confidence 876543311 022356789999999999999877643221 12447889999999876443
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=102.32 Aligned_cols=123 Identities=17% Similarity=0.231 Sum_probs=84.5
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.|||||||+|.++..+++.+..++++| ++..+.+.+.++ + .+.+..+| ++..+++||+|++..+++|+
T Consensus 66 ~vLDvGcG~G~~~~~l~~~~~~v~~~D--~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 66 RILDAGCGVGSLSIPLARRGAKVVASD--ISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred EEEEEeCCCCHHHHHHHHcCCEEEEEE--CCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcC
Confidence 449999999999999999988888855 433444333221 2 35677776 44456889999999999885
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEee-------------cccc-c------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHF-------------FCVG-A------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~-------------~~~~-~------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+...+..+++++.+.+++++++.+... +... . -...++.++++++||+.+.....
T Consensus 141 -~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 141 -PQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred -CHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 445667899999998766555543221 0000 0 01456888999999998877643
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-10 Score=104.37 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=78.3
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCC---CCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLP---FFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lp---f~d~sFDlV~s~~~ 307 (392)
++||||||+|.++..+++.. ..++| +|++..+.+.+. +.+ .+.++.+|+..++ ++++++|.|++.+.
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p~~~v~g--vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNPDKNFLG--IEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCCCCCEEE--EEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 45999999999999999864 46677 555344443322 222 3678888887653 45679999998875
Q ss_pred ccccCCch------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC-CeEE
Q 047630 308 LSNWIPTT------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG-FNKL 362 (392)
Q Consensus 308 l~~~~~~~------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG-f~~i 362 (392)
. +|.... ..+.+++++.|+|||||.|++... .......+.+.+.+.+ |+.+
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td---~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD---NEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC---CHHHHHHHHHHHHhCCCeEec
Confidence 4 222211 114689999999999999987652 2233344556666655 6654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=105.57 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=79.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-----------CccEEEeccCcCCCCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-----------VVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-----------~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
.|||+|||+|.++..+++.+..|+++ |++..+.+.+.++. .+.+...|.+.+ +++||+|+|..+
T Consensus 147 ~VLDlGcGtG~~a~~la~~g~~V~gv--D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~v 221 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLALEGAIVSAS--DISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDV 221 (315)
T ss_pred EEEEecCCCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCE
Confidence 34999999999999999999999984 55444444333221 135666665543 578999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeec--------------cc-c----cc--hHHHHHHHHHHcCCeEEEEE
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF--------------CV-G----AQ--LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~--------------~~-~----~~--l~~~l~~ll~~aGf~~i~w~ 365 (392)
++|+ +++....+++.+.+ +.+||.++..... .. . .. -.++++++++++||+++.-.
T Consensus 222 L~H~-p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 222 LIHY-PQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred EEec-CHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 9885 44444567777775 4566665432110 00 0 00 15779999999999987544
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=98.17 Aligned_cols=139 Identities=18% Similarity=0.242 Sum_probs=82.6
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCC
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFD 296 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d 296 (392)
...+.+++++ ||+|||+|.++..++++. ..++++|++. .. ...+ +.++.+|..+.+ +++
T Consensus 27 ~~~i~~g~~V---LDiG~GtG~~~~~l~~~~~~~~~v~~vDis~--~~----~~~~-i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 27 FKLIKPGDTV---LDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP--MK----PIEN-VDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred hcccCCCCEE---EEecCCCCHHHHHHHHHhCCCceEEEEeccc--cc----cCCC-ceEEEeeCCChhHHHHHHHHhCC
Confidence 3334555555 999999999998888743 3588855543 22 1123 577777776542 456
Q ss_pred CcccEEEEccccc--------ccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 297 NTLDIVHSMHVLS--------NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 297 ~sFDlV~s~~~l~--------~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
++||+|++..+.+ +....+..+.++.++.++|+|||++++..+. .++..+ +...+++. |..+......
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~--~~~~~~-~l~~l~~~-~~~~~~~~~~ 172 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ--GEEIDE-YLNELRKL-FEKVKVTKPQ 172 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc--CccHHH-HHHHHHhh-hceEEEeCCC
Confidence 7899999865421 1111123467999999999999999987532 233333 33444442 5444333211
Q ss_pred ccCCCCcccceeeE
Q 047630 369 KLDRGPELREMYLS 382 (392)
Q Consensus 369 k~d~~~~~~e~yls 382 (392)
-.-....|.|+.
T Consensus 173 --~~~~~~~~~~~~ 184 (188)
T TIGR00438 173 --ASRKRSAEVYIV 184 (188)
T ss_pred --CCCcccceEEEE
Confidence 111245577763
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=96.06 Aligned_cols=111 Identities=21% Similarity=0.290 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCE--EEEEecCCCchhHHH----HHhcCC--ccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNIT--IVTTSMNLNGPFNNF----IASRGV--VPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~--vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~L 292 (392)
...+++.+... +.+++ ||+|||+|.++..+++.+.. ++++|++ ....+. +...+. +.++.+|...
T Consensus 20 t~lL~~~l~~~-~~~~v---LDlG~G~G~i~~~la~~~~~~~v~~vDi~--~~a~~~a~~n~~~n~~~~v~~~~~d~~~- 92 (170)
T PF05175_consen 20 TRLLLDNLPKH-KGGRV---LDLGCGSGVISLALAKRGPDAKVTAVDIN--PDALELAKRNAERNGLENVEVVQSDLFE- 92 (170)
T ss_dssp HHHHHHHHHHH-TTCEE---EEETSTTSHHHHHHHHTSTCEEEEEEESB--HHHHHHHHHHHHHTTCTTEEEEESSTTT-
T ss_pred HHHHHHHHhhc-cCCeE---EEecCChHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHHHhcCccccccccccccc-
Confidence 44555555533 44566 99999999999999997766 7775544 333332 222332 4566777544
Q ss_pred CCCCCcccEEEEcccccccCC--chhHHHHHHHHHHcccCCcEEEEEe
Q 047630 293 PFFDNTLDIVHSMHVLSNWIP--TTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~--~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+.++++||+|+++..++.-.+ ...++.++++..+.|||||.|++..
T Consensus 93 ~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 93 ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 234789999999987654221 1246789999999999999997754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-09 Score=106.74 Aligned_cols=126 Identities=12% Similarity=0.079 Sum_probs=87.3
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcCCCCCCcccE
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~Lpf~d~sFDl 301 (392)
+..+.++..+ ||+|||+|.++..++..+..++|+|+|. .+.. .+...+. +.+..+|+.++|+.+++||+
T Consensus 177 l~~~~~g~~v---LDp~cGtG~~lieaa~~~~~v~g~Di~~--~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~ 251 (329)
T TIGR01177 177 LARVTEGDRV---LDPFCGTGGFLIEAGLMGAKVIGCDIDW--KMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDA 251 (329)
T ss_pred HhCCCCcCEE---EECCCCCCHHHHHHHHhCCeEEEEcCCH--HHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCE
Confidence 3344454445 9999999999998888899999955543 3333 2222232 56788999999988899999
Q ss_pred EEEccccccc--C----CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 302 VHSMHVLSNW--I----PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 302 V~s~~~l~~~--~----~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
|++...+... . .......++.++.|+|||||++++..... . .+.+.++++|| ++.-.
T Consensus 252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~----~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--I----DLESLAEDAFR-VVKRF 314 (329)
T ss_pred EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--C----CHHHHHhhcCc-chhee
Confidence 9997443211 0 11224689999999999999997764322 1 25568899999 65443
|
This family is found exclusively in the Archaea. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=89.79 Aligned_cols=92 Identities=21% Similarity=0.168 Sum_probs=64.6
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHH----HhcC--CccEEEeccCc-CCCCCCcccEEEEccccc
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFI----ASRG--VVPLYISISQR-LPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~a----a~rg--~i~~~~~d~~~-Lpf~d~sFDlV~s~~~l~ 309 (392)
.|||+|||+|.++..+++.. ..+++ +|++....+.+ ...+ .+.++.++... ++...++||.|++.....
T Consensus 22 ~vldlG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 22 VLWDIGAGSGSITIEAARLVPNGRVYA--IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred EEEEeCCCCCHHHHHHHHHCCCceEEE--EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 44999999999999999853 46777 55544444322 2222 25666676554 333446899999976543
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
. ...+++++++.|||||.|++..
T Consensus 100 ~------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 L------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred h------HHHHHHHHHHHcCCCCEEEEEe
Confidence 3 3579999999999999998864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.8e-09 Score=102.00 Aligned_cols=143 Identities=11% Similarity=0.154 Sum_probs=88.6
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCch----hHHHHHhcCCccEEEeccCc---CCCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGP----FNNFIASRGVVPLYISISQR---LPFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~----~~~~aa~rg~i~~~~~d~~~---Lpf~d~sFD 300 (392)
+.++.+| ||+|||+|.++..+++. + -.|+++| ++.. ....+.++..+.++++|+.. +....++||
T Consensus 130 IkpG~~V---LDLGaG~G~~t~~lAdiVG~~G~VyAVD--~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 130 IKPGSKV---LYLGAASGTTVSHVSDLVGPEGVVYAVE--FSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred cCCCCEE---EEeCCcCCHHHHHHHHHhCCCCEEEEEE--CcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCC
Confidence 4455555 99999999999999984 2 3688854 5322 22233334446777888643 222346899
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec-cc-----ccc-hHHHHHHHHHHcCCeEEEEEEeeccCCC
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF-CV-----GAQ-LEDVYVPLIESVGFNKLKWVVGRKLDRG 373 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~-~~-----~~~-l~~~l~~ll~~aGf~~i~w~~~~k~d~~ 373 (392)
+|++.... ++....++.++.++|||||.|+|..-. +. .++ +.++ .++++++||+.++.......
T Consensus 205 vV~~Dva~-----pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~e-v~~L~~~GF~~~e~v~L~Py--- 275 (293)
T PTZ00146 205 VIFADVAQ-----PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASE-VQKLKKEGLKPKEQLTLEPF--- 275 (293)
T ss_pred EEEEeCCC-----cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHH-HHHHHHcCCceEEEEecCCc---
Confidence 99987641 234446778999999999999984211 11 111 2222 37789999998877654333
Q ss_pred CcccceeeEEEEEcC
Q 047630 374 PELREMYLSALLEKP 388 (392)
Q Consensus 374 ~~~~e~ylsai~~Kp 388 (392)
..+...+.++++.+
T Consensus 276 -~~~h~~v~~~~~~~ 289 (293)
T PTZ00146 276 -ERDHAVVIGVYRPV 289 (293)
T ss_pred -cCCcEEEEEEEcCC
Confidence 23343344455443
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=100.63 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHH----HhcC--CccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFI----ASRG--VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~a----a~rg--~i~~~~~d~~~L 292 (392)
.+.+++.++...+.. -..|||+|||+|.++..+++. +..++++| ++....+.+ ...+ .+.++.+|...
T Consensus 73 ~~~l~~~~l~~~~~~-~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD--~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~- 148 (251)
T TIGR03534 73 TEELVEAALERLKKG-PLRVLDLGTGSGAIALALAKERPDARVTAVD--ISPEALAVARKNAARLGLDNVTFLQSDWFE- 148 (251)
T ss_pred hHHHHHHHHHhcccC-CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCeEEEEECchhc-
Confidence 455666665543322 124599999999999999985 45777755 433444322 2223 25777888765
Q ss_pred CCCCCcccEEEEcccccccC-----Cc------------------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 293 PFFDNTLDIVHSMHVLSNWI-----PT------------------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~-----~~------------------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
++++++||+|+++..+.... .. .....++.++.++|+|||.+++..-.. ..+.
T Consensus 149 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~----~~~~ 224 (251)
T TIGR03534 149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD----QGEA 224 (251)
T ss_pred cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc----HHHH
Confidence 45678999999975443210 00 112468899999999999999875332 2345
Q ss_pred HHHHHHHcCCeEEEEE
Q 047630 350 YVPLIESVGFNKLKWV 365 (392)
Q Consensus 350 l~~ll~~aGf~~i~w~ 365 (392)
+.++++++||+.+...
T Consensus 225 ~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 225 VRALFEAAGFADVETR 240 (251)
T ss_pred HHHHHHhCCCCceEEE
Confidence 7888999999877643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-09 Score=103.94 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=74.6
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHH----hcCC---ccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIA----SRGV---VPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa----~rg~---i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
+|||+|||+|.++..+++.+. .++++|+|. ...+.+. .++. +.+..++ ..+..+++||+|+++....
T Consensus 162 ~VLDvGcGsG~lai~aa~~g~~~V~avDid~--~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 162 NVIDVGCGSGILSIAALKLGAAKVVGIDIDP--LAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILAE- 236 (288)
T ss_pred EEEEeCCChhHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCHH-
Confidence 349999999999999988765 688855543 3333222 2232 2233333 2234467899999976542
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.+..++.++.++|||||+|+++.+... ..+.+.+.+++. |+.+..
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~---~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILET---QAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHh---HHHHHHHHHHcc-CceeeE
Confidence 345789999999999999999876532 233466667665 776654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=92.88 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=79.2
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcC-CCCCCcc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRL-PFFDNTL 299 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~L-pf~d~sF 299 (392)
+.++..+ ||+|||+|.++..++.. +.+++++| ++..+.+. +.+.+ .+.++.+|.... +..++.|
T Consensus 38 ~~~~~~v---lDlG~GtG~~s~~~a~~~~~~~~v~avD--~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMI---LDIGCGTGSVTVEASLLVGETGKVYAVD--KDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEE---EEeCCcCCHHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 4455555 99999999999988763 35788855 43344442 22233 256777776553 3334689
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe--EEEEE
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN--KLKWV 365 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~--~i~w~ 365 (392)
|+|++.... ..+..+++++.++|||||++++... ..+.. ....+.+++.||. .++|.
T Consensus 113 D~V~~~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~-~~~~~~l~~~g~~~~~~~~~ 171 (198)
T PRK00377 113 DRIFIGGGS------EKLKEIISASWEIIKKGGRIVIDAI--LLETV-NNALSALENIGFNLEITEVI 171 (198)
T ss_pred CEEEECCCc------ccHHHHHHHHHHHcCCCcEEEEEee--cHHHH-HHHHHHHHHcCCCeEEEEEe
Confidence 999985422 3345789999999999999987543 22223 4477788889973 34444
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=99.23 Aligned_cols=106 Identities=18% Similarity=0.108 Sum_probs=81.3
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEccc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
+...+....+.|.|+|||+|..+..|+++-+..+.+++|-+.++.+.++.+. .+.|..+|+..+. ++..+|+++++.+
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv 101 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV 101 (257)
T ss_pred HhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhh
Confidence 3333445566679999999999999999755444444887677777777775 3788999988875 5678999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+...+. ..+|..+...|.|||.|.+.-
T Consensus 102 lqWlpdH---~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 102 LQWLPDH---PELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhhcccc---HHHHHHHHHhhCCCceEEEEC
Confidence 9665333 368999999999999997663
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-09 Score=98.07 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=67.1
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCCCCCc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf~d~s 298 (392)
+.+.++.++ ||+|||+|..+..+++. +..++++| ++....+.+. +.+ .+.++.+|........++
T Consensus 68 l~~~~~~~V---LDiG~GsG~~~~~la~~~~~~g~V~~iD--~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 68 IEPRPGMKI---LEVGTGSGYQAAVCAEAIERRGKVYTVE--IVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred cCCCCCCEE---EEECcCccHHHHHHHHhcCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence 334454555 99999999999988873 35788855 4334433222 223 257788887765445678
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
||+|++..++.++ ..++.++|||||+|++..
T Consensus 143 fD~Ii~~~~~~~~---------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 143 FDAIIVTAAASTI---------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccEEEEccCcchh---------hHHHHHhcCcCcEEEEEE
Confidence 9999999887553 357889999999998763
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=101.83 Aligned_cols=111 Identities=16% Similarity=0.262 Sum_probs=73.9
Q ss_pred cHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHH----HHhcCC-ccEEEeccCcC
Q 047630 220 GLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNF----IASRGV-VPLYISISQRL 292 (392)
Q Consensus 220 ~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~----aa~rg~-i~~~~~d~~~L 292 (392)
+.+.+++.+.. ...+++ ||+|||+|.++..+++++ ..++++|++ ....+. +.+.+. ..++.+|...
T Consensus 184 gt~lLl~~l~~-~~~g~V---LDlGCG~G~ls~~la~~~p~~~v~~vDis--~~Al~~A~~nl~~n~l~~~~~~~D~~~- 256 (342)
T PRK09489 184 GSQLLLSTLTP-HTKGKV---LDVGCGAGVLSAVLARHSPKIRLTLSDVS--AAALESSRATLAANGLEGEVFASNVFS- 256 (342)
T ss_pred HHHHHHHhccc-cCCCeE---EEeccCcCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCEEEEccccc-
Confidence 34555554432 222444 999999999999999865 477775544 333332 223332 3455555443
Q ss_pred CCCCCcccEEEEcccccccCC--chhHHHHHHHHHHcccCCcEEEEEe
Q 047630 293 PFFDNTLDIVHSMHVLSNWIP--TTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~--~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..++.||+|+++..+|.... ....+.+++++.+.|||||.|++..
T Consensus 257 -~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 257 -DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred -ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 23678999999998875322 3456789999999999999998875
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=107.84 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=74.6
Q ss_pred CcHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh----cC-----CccEEEe
Q 047630 219 GGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS----RG-----VVPLYIS 287 (392)
Q Consensus 219 ~~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~----rg-----~i~~~~~ 287 (392)
.|.+.+++.+-. ..+++ |||+|||+|.++..+++++ .+++++| ++....+.+.+ .+ .+.++.+
T Consensus 215 ~GtrllL~~lp~-~~~~~---VLDLGCGtGvi~i~la~~~P~~~V~~vD--~S~~Av~~A~~N~~~n~~~~~~~v~~~~~ 288 (378)
T PRK15001 215 IGARFFMQHLPE-NLEGE---IVDLGCGNGVIGLTLLDKNPQAKVVFVD--ESPMAVASSRLNVETNMPEALDRCEFMIN 288 (378)
T ss_pred hHHHHHHHhCCc-ccCCe---EEEEeccccHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHcCcccCceEEEEEc
Confidence 456666655431 12234 4999999999999999864 5677755 53333332221 22 2456666
Q ss_pred ccCcCCCCCCcccEEEEccccccc--CCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 288 ISQRLPFFDNTLDIVHSMHVLSNW--IPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 288 d~~~Lpf~d~sFDlV~s~~~l~~~--~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|.... +.+.+||+|+|+..+|.. .......++++++.++|||||.|++..
T Consensus 289 D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 289 NALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 65331 245689999999777643 233445689999999999999999884
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.8e-09 Score=100.03 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=78.7
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
.....-...+.|||||+|.|.++..+++..+.+.++-+|+ +...+.+.+...+.++.+|.. -+++. +|+++..+++
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhh
Confidence 3333334556779999999999999999655444444666 444444444556899999987 56655 9999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCC--cEEEEEeeccc
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPG--GLFWLDHFFCV 342 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPG--G~lii~~~~~~ 342 (392)
|+|.+ +....+|+++++.|+|| |+|+|.+..-+
T Consensus 169 h~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 169 HDWSD-EDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp GGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred hhcch-HHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 99855 55579999999999999 99998887643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-08 Score=95.02 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=90.0
Q ss_pred cccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 236 TIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
+...+||||+|.|..+..|+..-.+|++++++ ..+.....++|. .++-. .++.-.+..||+|.|.+++.....+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S--~~Mr~rL~~kg~-~vl~~--~~w~~~~~~fDvIscLNvLDRc~~P- 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS--PPMRWRLSKKGF-TVLDI--DDWQQTDFKFDVISCLNVLDRCDRP- 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC--HHHHHHHHhCCC-eEEeh--hhhhccCCceEEEeehhhhhccCCH-
Confidence 44456999999999999999987888886643 466667777873 43322 2233335689999999999876333
Q ss_pred hHHHHHHHHHHcccCCcEEEEEeec---------c-----ccc----------chHHHHHHHHHHcCCeEEEEEEeec
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDHFF---------C-----VGA----------QLEDVYVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~~~---------~-----~~~----------~l~~~l~~ll~~aGf~~i~w~~~~k 369 (392)
..+|+++++.|+|+|++++.-.. . +.+ +-...+.+.++.+||+++.|....=
T Consensus 168 --~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 168 --LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPY 243 (265)
T ss_pred --HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCc
Confidence 35999999999999999777531 1 010 0122344889999999999997763
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=93.89 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=79.1
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHH----HHhcCC-ccEEEeccCcCCCCCCcccEEEEc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNF----IASRGV-VPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~----aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.++.++ ||+|||+|.++..+++.+. .++++|+|. ..... +...+. +.++.+|... .+.+++||+|+++
T Consensus 35 ~~~~~v---LDlGcG~G~~~~~la~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n 108 (223)
T PRK14967 35 GPGRRV---LDLCTGSGALAVAAAAAGAGSVTAVDISR--RAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSN 108 (223)
T ss_pred CCCCeE---EEecCCHHHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEEC
Confidence 344445 9999999999999998765 788855443 33332 222232 4566777655 3456799999998
Q ss_pred ccccccCC------------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 306 HVLSNWIP------------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 306 ~~l~~~~~------------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
..+..-.. ...++.++.++.++|||||++++..-... .. ..+.+.+++.||.....
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~-~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GV-ERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CH-HHHHHHHHHCCCCeEEE
Confidence 54332111 01246688999999999999987542221 22 23666777888765443
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=97.09 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=88.4
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHH-HhcC-----------------CccEEEeccCcCCCCC-Cccc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFI-ASRG-----------------VVPLYISISQRLPFFD-NTLD 300 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~a-a~rg-----------------~i~~~~~d~~~Lpf~d-~sFD 300 (392)
||+.|||.|.-+..|+++|.+|+|+| ++....+.+ .+++ .+.++++|...++-.. ++||
T Consensus 41 vLvPgCG~g~D~~~La~~G~~VvGvD--ls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD 118 (218)
T PF05724_consen 41 VLVPGCGKGYDMLWLAEQGHDVVGVD--LSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFD 118 (218)
T ss_dssp EEETTTTTSCHHHHHHHTTEEEEEEE--S-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEE
T ss_pred EEEeCCCChHHHHHHHHCCCeEEEEe--cCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCce
Confidence 49999999999999999999999955 533333333 2322 1467788888876543 4799
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee-ccccc-------chHHHHHHHHHHcCCeEEEEEEeecc
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF-FCVGA-------QLEDVYVPLIESVGFNKLKWVVGRKL 370 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~-~~~~~-------~l~~~l~~ll~~aGf~~i~w~~~~k~ 370 (392)
+|+=..+++- .+++..++..+.+.++|||||.+++..+ +.... -..+++.+++. .+|++.........
T Consensus 119 ~iyDr~~l~A-lpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~~~~ 194 (218)
T PF05724_consen 119 LIYDRTFLCA-LPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEEEDSI 194 (218)
T ss_dssp EEEECSSTTT-S-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEEEE-T
T ss_pred EEEEeccccc-CCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEeccccc
Confidence 9999988866 5778889999999999999999433332 22111 11667888887 67888777764433
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=95.98 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc------CCccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR------GVVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r------g~i~~~~~d~~~L 292 (392)
.+.+++.++.......-..|||+|||+|.++..+++.. ..++++|++ ......+.++ ..+.++.+|...
T Consensus 93 te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis--~~~l~~a~~n~~~~~~~~i~~~~~d~~~- 169 (275)
T PRK09328 93 TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDIS--PEALAVARRNAKHGLGARVEFLQGDWFE- 169 (275)
T ss_pred cHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHhCCCCcEEEEEccccC-
Confidence 46666666532221122345999999999999999854 677775544 3333322221 136777777643
Q ss_pred CCCCCcccEEEEcccccccC-----C------------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 293 PFFDNTLDIVHSMHVLSNWI-----P------------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~-----~------------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
++.+++||+|+++..+.... . -+..+.++.++.++|||||++++..-. ...+.
T Consensus 170 ~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~----~~~~~ 245 (275)
T PRK09328 170 PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY----DQGEA 245 (275)
T ss_pred cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc----hHHHH
Confidence 23467899999974432110 0 122457888999999999999986422 22345
Q ss_pred HHHHHHHcCCeEEEEE
Q 047630 350 YVPLIESVGFNKLKWV 365 (392)
Q Consensus 350 l~~ll~~aGf~~i~w~ 365 (392)
+.+++++.||..+...
T Consensus 246 ~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 246 VRALLAAAGFADVETR 261 (275)
T ss_pred HHHHHHhCCCceeEEe
Confidence 7888899999877664
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-09 Score=105.57 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=69.9
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcC--CCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRL--PFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~L--pf~d~sFDlV~s~~~l 308 (392)
.+||||||+|.++..+++.. ..++| +|+..+..+ .+.+++ .+.++.+|+..+ .++++++|.|++.+..
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iG--IEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIG--IEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEE--EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 45999999999999999975 45666 555444443 233334 367888887654 5788999999987654
Q ss_pred cccCCchh----HHHHHHHHHHcccCCcEEEEEe
Q 047630 309 SNWIPTTL----LHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 309 ~~~~~~~~----l~~~L~el~RvLKPGG~lii~~ 338 (392)
.|..... .+.++.++.|+|+|||.+.+..
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4432221 2579999999999999997764
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-09 Score=97.02 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=66.6
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcCC---EEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCCCCCCc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERNI---TIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~---~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lpf~d~s 298 (392)
.+.+.++.++ ||||||+|.++..+++... .|+++| ++....+.+. +.+ .+.++.+|........+.
T Consensus 72 ~l~~~~~~~V---LDiG~GsG~~a~~la~~~~~~g~V~~vD--~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 72 LLELKPGMKV---LEIGTGSGYQAAVLAEIVGRDGLVVSIE--RIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HhCCCCcCEE---EEECCCccHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence 3445555555 9999999999999998533 477744 4344443322 223 367888887665444578
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
||+|++.....+ +...+.+.|||||++++.
T Consensus 147 fD~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 147 YDRIYVTAAGPK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCEEEEcCCccc---------ccHHHHHhcCcCcEEEEE
Confidence 999998766543 346688999999999886
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=99.31 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=67.8
Q ss_pred cEEEEEcCCcchHHHH-HH-Hc--CCEEEEEecCCCchhHHHH---H-h-cC---CccEEEeccCcCCCCCCcccEEEEc
Q 047630 238 RIGLDIGGGVATFAVR-MM-ER--NITIVTTSMNLNGPFNNFI---A-S-RG---VVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~-La-~~--g~~vvg~~iD~~a~~~~~a---a-~-rg---~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
+.|+|||||.|.++.. ++ .. +..++++|+|. ...+.+ . + .+ .+.|..+|+..++-..+.||+|++.
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~--~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP--SANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 4459999998855433 33 23 34577755443 443321 2 1 22 3889999987764335789999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
++++|.. +..+++++++.+.|+|||+|++...
T Consensus 203 -ALi~~dk-~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 -ALVGMDK-EEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -ccccccc-ccHHHHHHHHHHhcCCCcEEEEecc
Confidence 8888733 4446899999999999999999863
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-08 Score=91.52 Aligned_cols=125 Identities=22% Similarity=0.332 Sum_probs=83.1
Q ss_pred EEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhH--HHHHhcCC----ccEEEeccCc-CCC------CCCcccEEEE
Q 047630 240 GLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFN--NFIASRGV----VPLYISISQR-LPF------FDNTLDIVHS 304 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~--~~aa~rg~----i~~~~~d~~~-Lpf------~d~sFDlV~s 304 (392)
|||||+|||..+.++++. ..+..-+|+|...-.+ +.+.+.+. .++....... .+. ..++||+|+|
T Consensus 29 vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~ 108 (204)
T PF06080_consen 29 VLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFC 108 (204)
T ss_pred EEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeee
Confidence 499999999999999995 4455555555422112 22334332 2222221111 232 3568999999
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccch-----------------------HHHHHHHHHHcCCeE
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL-----------------------EDVYVPLIESVGFNK 361 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l-----------------------~~~l~~ll~~aGf~~ 361 (392)
.+++| +.+....+.+++.+.++|++||.|++...|...+.. .+++.++..+.|++.
T Consensus 109 ~N~lH-I~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 109 INMLH-ISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL 187 (204)
T ss_pred hhHHH-hcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence 99984 477788899999999999999999888654332211 455788888888876
Q ss_pred EEEE
Q 047630 362 LKWV 365 (392)
Q Consensus 362 i~w~ 365 (392)
.+-.
T Consensus 188 ~~~~ 191 (204)
T PF06080_consen 188 EEDI 191 (204)
T ss_pred Cccc
Confidence 5543
|
The function of this family is unknown. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=95.20 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=68.3
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~s 298 (392)
.+.+.++.++ ||||||+|+++..+++. +.++++ +|++....+.+.+ .+ .+.++.+|........+.
T Consensus 71 ~l~~~~g~~V---LdIG~GsG~~t~~la~~~~~~~~V~~--vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~ 145 (212)
T PRK13942 71 LLDLKEGMKV---LEIGTGSGYHAAVVAEIVGKSGKVVT--IERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAP 145 (212)
T ss_pred HcCCCCcCEE---EEECCcccHHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCC
Confidence 3345566666 99999999999988874 257888 4453444443322 23 367888887766556789
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
||+|++.....+ +...+.+.|||||++++..
T Consensus 146 fD~I~~~~~~~~---------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 146 YDRIYVTAAGPD---------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCEEEECCCccc---------chHHHHHhhCCCcEEEEEE
Confidence 999999876544 2356778999999998863
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-08 Score=96.64 Aligned_cols=114 Identities=18% Similarity=0.305 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH----HHHhcCCc--cEEEecc
Q 047630 218 NGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN----FIASRGVV--PLYISIS 289 (392)
Q Consensus 218 ~~~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~----~aa~rg~i--~~~~~d~ 289 (392)
+.|.+.+++.+... .+++| ||+|||.|.+++.+++.++ .++-+|+|. ...+ .+..++.- .++.++.
T Consensus 144 D~GS~lLl~~l~~~-~~~~v---lDlGCG~Gvlg~~la~~~p~~~vtmvDvn~--~Av~~ar~Nl~~N~~~~~~v~~s~~ 217 (300)
T COG2813 144 DKGSRLLLETLPPD-LGGKV---LDLGCGYGVLGLVLAKKSPQAKLTLVDVNA--RAVESARKNLAANGVENTEVWASNL 217 (300)
T ss_pred ChHHHHHHHhCCcc-CCCcE---EEeCCCccHHHHHHHHhCCCCeEEEEecCH--HHHHHHHHhHHHcCCCccEEEEecc
Confidence 34577777766533 23456 9999999999999999775 566655443 3222 23333321 2334433
Q ss_pred CcCCCCCCcccEEEEcccccccCC--chhHHHHHHHHHHcccCCcEEEEEee
Q 047630 290 QRLPFFDNTLDIVHSMHVLSNWIP--TTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 290 ~~Lpf~d~sFDlV~s~~~l~~~~~--~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
-.+..+ +||+|+|+-.+|.-.. ..-.++++.+..+.|++||.|+|..-
T Consensus 218 -~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 218 -YEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred -cccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 334444 8999999999875321 12234799999999999999988864
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-09 Score=87.42 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=70.0
Q ss_pred EEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCC--CCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLP--FFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lp--f~d~sFDlV~s~~~l 308 (392)
+|||+|||+|.++..+++.+ ..++++|+|. ...+.+. ..+ .+.++++|...+. +.+++||+|+++..+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~--~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDP--EAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSH--HHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECH--HHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 35999999999999999988 8888866554 3322222 122 3688999987775 778999999999766
Q ss_pred cccCC-----chhHHHHHHHHHHcccCCcEEEEEe
Q 047630 309 SNWIP-----TTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 309 ~~~~~-----~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..... ......+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 54211 1234678999999999999997753
|
... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.8e-08 Score=99.34 Aligned_cols=138 Identities=12% Similarity=0.158 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHH----HhcCC-ccEEEeccCcCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFI----ASRGV-VPLYISISQRLP 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~a----a~rg~-i~~~~~d~~~Lp 293 (392)
...++..++...++.+| ||+|||+|..+..+++.. ..+++ +|++..+...+ .+.|. +.++++|...++
T Consensus 232 ~s~~~~~~l~~~~g~~V---LDlgaG~G~~t~~la~~~~~~~v~a--~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~ 306 (427)
T PRK10901 232 AAQLAATLLAPQNGERV---LDACAAPGGKTAHILELAPQAQVVA--LDIDAQRLERVRENLQRLGLKATVIVGDARDPA 306 (427)
T ss_pred HHHHHHHHcCCCCCCEE---EEeCCCCChHHHHHHHHcCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch
Confidence 44455556666666666 999999999999999864 47777 44534444322 22232 467788887654
Q ss_pred --CCCCcccEEEEcccccc-----------c-CCchh-------HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHH
Q 047630 294 --FFDNTLDIVHSMHVLSN-----------W-IPTTL-------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352 (392)
Q Consensus 294 --f~d~sFDlV~s~~~l~~-----------~-~~~~~-------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ 352 (392)
+.+++||.|++...... | ..+.+ ..+++.++.++|||||++++....-..++-.+.+..
T Consensus 307 ~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~ 386 (427)
T PRK10901 307 QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKA 386 (427)
T ss_pred hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHH
Confidence 34678999995432111 1 11111 246899999999999999988754333333455777
Q ss_pred HHHHc-CCeEEE
Q 047630 353 LIESV-GFNKLK 363 (392)
Q Consensus 353 ll~~a-Gf~~i~ 363 (392)
.+++. +|+.+.
T Consensus 387 ~l~~~~~~~~~~ 398 (427)
T PRK10901 387 FLARHPDAELLD 398 (427)
T ss_pred HHHhCCCCEEec
Confidence 77664 566554
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-08 Score=97.09 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=66.8
Q ss_pred EEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhc------CC-ccEEEeccCc-CCCCCCc----ccEEEE
Q 047630 240 GLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASR------GV-VPLYISISQR-LPFFDNT----LDIVHS 304 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~r------g~-i~~~~~d~~~-Lpf~d~s----FDlV~s 304 (392)
|||+|||+|..+..|++. +.++++ +|++..+.+.++++ +. +.++++|..+ +++.... ..++++
T Consensus 67 iLELGcGtG~~t~~Ll~~l~~~~~~~~--iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 67 LVELGSGSSRKTRLLLDALRQPARYVP--IDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred EEecCCCcchhHHHHHHhhccCCeEEE--EECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 499999999999999886 578888 55545555443332 11 4557888765 4443332 234444
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
...++++ +++....+|++++++|+|||.|++..-
T Consensus 145 gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 145 GSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred cccccCC-CHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 4566664 566678999999999999999988653
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-08 Score=91.75 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=86.2
Q ss_pred cccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHh-----c-CCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 236 TIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIAS-----R-GVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~-----r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
....+||.|+|-|+++..+.-. .-+|-. +++...+.+.+.+ . +...+++...+++....++||+|++.+++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDl--VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDL--VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEE--EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEE--eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4566799999999999977654 344544 4454455554442 1 22456667777775556799999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc------------hHHHHHHHHHHcCCeEEEEEEeec
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ------------LEDVYVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~------------l~~~l~~ll~~aGf~~i~w~~~~k 369 (392)
.|+ .++++-.+|+.+...|+|||++++-+-....+. -.+.++++++++|++.++-.....
T Consensus 133 ghL-TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 133 GHL-TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp GGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred ccC-CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 995 566677999999999999999998874333221 167799999999999998775543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.4e-08 Score=95.52 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=77.4
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcC---CccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
.|||+|||+|.++..+++. +..++++|++ ....+ .+...+ .+.++.+|... ++++++||+|+++-...
T Consensus 124 ~vLDlG~GsG~i~~~la~~~~~~~v~avDis--~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAFPEAEVDAVDIS--PDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred EEEEEeCchhHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 4599999999999999985 4578885544 34333 222333 26778888643 23456899999973221
Q ss_pred c------c------CCc----------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 310 N------W------IPT----------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 310 ~------~------~~~----------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
. . .+. ...+.++.++.++|+|||++++...... +.+.+++.+.||.-..
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-----~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-----EALEEAYPDVPFTWLE 271 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-----HHHHHHHHhCCCceee
Confidence 1 0 000 1235789999999999999998764321 3477788888875443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.8e-08 Score=98.25 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhC-CCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHH----hcC-CccEEEeccCcC
Q 047630 221 LDFSIDEVLATK-KPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIA----SRG-VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~-~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa----~rg-~i~~~~~d~~~L 292 (392)
.+.+++.++... ++. .|||+|||+|.++..+++. +..++++|+| ....+.+. +.+ .+.++.+|....
T Consensus 238 TE~LVe~aL~~l~~~~---rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS--~~ALe~AreNa~~~g~rV~fi~gDl~e~ 312 (423)
T PRK14966 238 TEHLVEAVLARLPENG---RVWDLGTGSGAVAVTVALERPDAFVRASDIS--PPALETARKNAADLGARVEFAHGSWFDT 312 (423)
T ss_pred HHHHHHHhhhccCCCC---EEEEEeChhhHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCcEEEEEcchhcc
Confidence 677777776533 333 3599999999999998864 5678885544 34443222 223 367888887543
Q ss_pred CC-CCCcccEEEEcccccccCC----------------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 293 PF-FDNTLDIVHSMHVLSNWIP----------------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 293 pf-~d~sFDlV~s~~~l~~~~~----------------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
.+ .+++||+|+|+.....-.+ .+..+.++.++.+.|+|||.+++..-.. ..+.
T Consensus 313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~----Q~e~ 388 (423)
T PRK14966 313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD----QGAA 388 (423)
T ss_pred ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc----HHHH
Confidence 33 2457999999864421100 0123467888889999999998765443 2345
Q ss_pred HHHHHHHcCCeEEEEE
Q 047630 350 YVPLIESVGFNKLKWV 365 (392)
Q Consensus 350 l~~ll~~aGf~~i~w~ 365 (392)
+.+++++.||..++..
T Consensus 389 V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 389 VRGVLAENGFSGVETL 404 (423)
T ss_pred HHHHHHHCCCcEEEEE
Confidence 7778888999876543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.1e-08 Score=94.95 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=85.6
Q ss_pred HHHHHHHHHhh-CCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHH----HHhcC---CccEEEeccC
Q 047630 221 LDFSIDEVLAT-KKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l-~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~ 290 (392)
.+.+++.++.. .+......|||+|||+|.++..++... ..++++|++. ..... +...+ .+.++.+|..
T Consensus 98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~--~al~~a~~n~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 98 TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP--DALAVAEENAEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECchh
Confidence 56666665532 111111345999999999999999853 5788855443 33332 22223 2677888765
Q ss_pred cCCCCCCcccEEEEccccccc------------CCc----------hhHHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 291 RLPFFDNTLDIVHSMHVLSNW------------IPT----------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 291 ~Lpf~d~sFDlV~s~~~l~~~------------~~~----------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
. ++++++||+|+++...... .+. ...+.++.++.+.|+|||++++....... +
T Consensus 176 ~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~----~ 250 (284)
T TIGR00536 176 E-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ----K 250 (284)
T ss_pred c-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH----H
Confidence 4 3445589999997322110 110 13567899999999999999888654433 3
Q ss_pred HHHHHHH-HcCCeEEEE
Q 047630 349 VYVPLIE-SVGFNKLKW 364 (392)
Q Consensus 349 ~l~~ll~-~aGf~~i~w 364 (392)
.+.+++. ..||..+..
T Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 251 SLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHhcCCCceeEE
Confidence 3555666 468876655
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=97.80 Aligned_cols=161 Identities=14% Similarity=0.072 Sum_probs=100.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~ 291 (392)
...++..++...++..| ||+|||+|..+..+++. ...+++ +|++..+... +.+.|. +.++.+|...
T Consensus 240 ~s~l~~~~l~~~~g~~V---LDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~ 314 (434)
T PRK14901 240 SAQLVAPLLDPQPGEVI---LDACAAPGGKTTHIAELMGDQGEIWA--VDRSASRLKKLQENAQRLGLKSIKILAADSRN 314 (434)
T ss_pred HHHHHHHHhCCCCcCEE---EEeCCCCchhHHHHHHHhCCCceEEE--EcCCHHHHHHHHHHHHHcCCCeEEEEeCChhh
Confidence 44455555655666666 99999999999999884 246777 5554444432 333342 6777888877
Q ss_pred CC----CCCCcccEEEEc------ccccccC------Cchh-------HHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 292 LP----FFDNTLDIVHSM------HVLSNWI------PTTL-------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 292 Lp----f~d~sFDlV~s~------~~l~~~~------~~~~-------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
++ +.+++||.|++. .++.+-. .+++ ..++|.++.++|||||+|++.+.....++..+
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~ 394 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEA 394 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHH
Confidence 65 456789999963 2222210 0111 35789999999999999998875554455556
Q ss_pred HHHHHHHHc-CCeEEEEEEeeccCCCCcccceeeEEEEEcC
Q 047630 349 VYVPLIESV-GFNKLKWVVGRKLDRGPELREMYLSALLEKP 388 (392)
Q Consensus 349 ~l~~ll~~a-Gf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp 388 (392)
.+...+++. +|+..... ...-......+.|+.+.++|.
T Consensus 395 ~v~~~l~~~~~~~~~~~~--~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 395 QIEQFLARHPDWKLEPPK--QKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred HHHHHHHhCCCcEecCCC--CccCCCCCCCCcEEEEEEEeC
Confidence 677778775 56643210 001111123455666888885
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.7e-08 Score=88.01 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=65.3
Q ss_pred HHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCc-CCCCC
Q 047630 226 DEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQR-LPFFD 296 (392)
Q Consensus 226 ~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~-Lpf~d 296 (392)
...+.+.+++.+ ||+|||+|.++..+++. +..++++| ++..+.+.+. +.+ .+.++.+|+.. ++...
T Consensus 33 ~~~l~~~~~~~V---LDiG~G~G~~~~~la~~~~~~~V~~vD--~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 33 ISQLRLEPDSVL---WDIGAGTGTIPVEAGLLCPKGRVIAIE--RDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHhcCCCCCCEE---EEeCCCCCHHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC
Confidence 333444444545 99999999999998864 46788844 5344443322 223 25677777643 22222
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
..+|.++... ...++.+++++.++|+|||++++....
T Consensus 108 ~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 108 PAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 3467665421 123467999999999999999888643
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=94.06 Aligned_cols=103 Identities=16% Similarity=0.246 Sum_probs=69.5
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCC-----ccEEEeccCcCCC--CC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV-----VPLYISISQRLPF--FD 296 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~-----i~~~~~d~~~Lpf--~d 296 (392)
++..+....++.+ .++|+|||+|.-+.-+++..-+|+++ |+++.+...+.+.-. .+....+.+..++ .+
T Consensus 23 w~~~ia~~~~~h~--~a~DvG~G~Gqa~~~iae~~k~VIat--D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 23 WFKKIASRTEGHR--LAWDVGTGNGQAARGIAEHYKEVIAT--DVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGE 98 (261)
T ss_pred HHHHHHhhCCCcc--eEEEeccCCCcchHHHHHhhhhheee--cCCHHHHHHhhcCCCcccccCCccccccccccccCCC
Confidence 3444554554433 56999999997777778887789984 454455555544422 2222223333344 49
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEE
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
++.|+|+|..++|. -+++.++++++|+||+.|-+
T Consensus 99 ~SVDlI~~Aqa~HW----Fdle~fy~~~~rvLRk~Gg~ 132 (261)
T KOG3010|consen 99 ESVDLITAAQAVHW----FDLERFYKEAYRVLRKDGGL 132 (261)
T ss_pred cceeeehhhhhHHh----hchHHHHHHHHHHcCCCCCE
Confidence 99999999999965 46678999999999987733
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-08 Score=77.52 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=69.6
Q ss_pred EEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHH---hcC---CccEEEeccCcCCC-CCCcccEEEEccccccc
Q 047630 240 GLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIA---SRG---VVPLYISISQRLPF-FDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa---~rg---~i~~~~~d~~~Lpf-~d~sFDlV~s~~~l~~~ 311 (392)
++|+|||.|.++..+++ .+..++++|++. .....+. +.. .+.++..+...... ..++||+|++..+++++
T Consensus 2 ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred eEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 59999999999999998 567888855443 3333222 111 35677777666553 56789999999998773
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
......+++.+.+.|||||.+++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 356678999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=93.58 Aligned_cols=134 Identities=15% Similarity=0.083 Sum_probs=82.2
Q ss_pred HHHHHHHHHh-hCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcC---CccEEEeccC
Q 047630 221 LDFSIDEVLA-TKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~-l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~ 290 (392)
.+.+++..+. ..+......|||+|||+|.++..++.. +..++++|+| ....+ .+...+ .+.++.+|..
T Consensus 117 te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis--~~al~~A~~n~~~~~l~~~i~~~~~D~~ 194 (307)
T PRK11805 117 IAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDIS--PDALAVAEINIERHGLEDRVTLIESDLF 194 (307)
T ss_pred hHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence 4555555442 222111134599999999999999986 4578885544 33333 222333 2678888864
Q ss_pred cCCCCCCcccEEEEcccccc------------cCCc----------hhHHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 291 RLPFFDNTLDIVHSMHVLSN------------WIPT----------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 291 ~Lpf~d~sFDlV~s~~~l~~------------~~~~----------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
. ++++++||+|+++-.... ..+. ...+.+++++.++|+|||.+++..... .+
T Consensus 195 ~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-----~~ 268 (307)
T PRK11805 195 A-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-----RV 268 (307)
T ss_pred h-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-----HH
Confidence 3 234568999999732211 0010 223578999999999999999875432 22
Q ss_pred HHHHHHHHcCCeEE
Q 047630 349 VYVPLIESVGFNKL 362 (392)
Q Consensus 349 ~l~~ll~~aGf~~i 362 (392)
.+.+++...||.-+
T Consensus 269 ~~~~~~~~~~~~~~ 282 (307)
T PRK11805 269 HLEEAYPDVPFTWL 282 (307)
T ss_pred HHHHHHhhCCCEEE
Confidence 36667777775443
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.7e-08 Score=89.79 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=88.6
Q ss_pred CCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-------HHHhcCCccEEEeccCcC--CCCCCcccEEE
Q 047630 234 PGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-------FIASRGVVPLYISISQRL--PFFDNTLDIVH 303 (392)
Q Consensus 234 ~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-------~aa~rg~i~~~~~d~~~L--pf~d~sFDlV~ 303 (392)
+.+| ||...|-|+.++...++|+ .|+.+..|.+.-..+ ...+. .++++.+|+.++ .|.|++||+|+
T Consensus 135 G~rV---LDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~-~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 135 GERV---LDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEI-AIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred CCEe---eeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccccc-ccEEecccHHHHHhcCCccccceEe
Confidence 4555 9999999999999999998 888877665432221 11111 268888986654 57899999998
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc----cccchHHHHHHHHHHcCCeEEEEE
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC----VGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~----~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
---.-......---+++.+|++|+|||||.++-..-.. ...+++....+.+.++||.+++-.
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee
Confidence 54221111112234678999999999999996443211 234557778899999999988754
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-07 Score=91.52 Aligned_cols=133 Identities=17% Similarity=0.262 Sum_probs=84.5
Q ss_pred HHHHHHHHHh-hCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH--HHHhcCCccEEEeccCcCCCC
Q 047630 221 LDFSIDEVLA-TKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN--FIASRGVVPLYISISQRLPFF 295 (392)
Q Consensus 221 ~~~lI~~ll~-l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~--~aa~rg~i~~~~~d~~~Lpf~ 295 (392)
.+.+++.++. ...... .|||+|||+|..+..++.... .|+++|++.++-..+ ++...+...+......-+.--
T Consensus 96 Te~Lve~~l~~~~~~~~--~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~ 173 (280)
T COG2890 96 TELLVEAALALLLQLDK--RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL 173 (280)
T ss_pred hHHHHHHHHHhhhhcCC--cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc
Confidence 6777777552 222232 459999999999999999765 888877665332222 444445433222222112222
Q ss_pred CCcccEEEEcccccccC-----C-----------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHH
Q 047630 296 DNTLDIVHSMHVLSNWI-----P-----------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPL 353 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~-----~-----------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~l 353 (392)
.++||+|+++-....-. + -+....++.++.+.|+|||.+++..-... .+.+.++
T Consensus 174 ~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q----~~~v~~~ 249 (280)
T COG2890 174 RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ----GEAVKAL 249 (280)
T ss_pred CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc----HHHHHHH
Confidence 34899999985443211 0 01356788999999999999998875544 3447779
Q ss_pred HHHcCC
Q 047630 354 IESVGF 359 (392)
Q Consensus 354 l~~aGf 359 (392)
+.+.|+
T Consensus 250 ~~~~~~ 255 (280)
T COG2890 250 FEDTGF 255 (280)
T ss_pred HHhcCC
Confidence 999994
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=90.06 Aligned_cols=124 Identities=17% Similarity=0.163 Sum_probs=84.6
Q ss_pred ccEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHhcC--------CccEEEeccCcCC--CCCCcccEEEE
Q 047630 237 IRIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIASRG--------VVPLYISISQRLP--FFDNTLDIVHS 304 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~rg--------~i~~~~~d~~~Lp--f~d~sFDlV~s 304 (392)
...|||+|||+|..+..++++ . +.+++ +++ .+.+...+.++ .+.++++|+..+. ..-.+||+|+|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~--VEi-q~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVG--VEI-QEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEE--EEe-CHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 455599999999999999997 3 67777 445 23333333322 3788899987763 23457999999
Q ss_pred cccccccCC---------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 305 MHVLSNWIP---------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 305 ~~~l~~~~~---------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+-.+..... ...++.+++-..++|||||.+.+..... .+ .++.+++.+.+|...+...+
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---rl-~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---RL-AEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---HH-HHHHHHHHhcCCCceEEEEe
Confidence 966643221 2247789999999999999998876332 22 33677788877766555444
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.6e-08 Score=92.15 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=82.4
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
+|||+|||+|.++..++++ +..++++| ++..+.+.+.++ ..+.++++|+..+. .+.+||+|+++..+++....+
T Consensus 67 rVLDLGcGsGilsl~la~r~~~~~V~gVD--isp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCKPEKIVCVE--LNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchh
Confidence 3499999999999888774 46888855 433444444333 23678889988765 356899999998887632211
Q ss_pred --h---------------HHHHHHHHHHcccCCcEEEEEeec---ccccchHHHHHHHHHHcCCeE
Q 047630 316 --L---------------LHFLMFDIYRVLRPGGLFWLDHFF---CVGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 316 --~---------------l~~~L~el~RvLKPGG~lii~~~~---~~~~~l~~~l~~ll~~aGf~~ 361 (392)
. +..++....++|+|+|.+++.-.. -...--.++|+.++++.||..
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 1 356788889999999977655211 111222677999999999864
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.5e-08 Score=89.87 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=66.4
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCcccE
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sFDl 301 (392)
.+.+.++.+| ||+|||+|.++..+++....++++|++ ....+.+.+ .+ .+.+..+|........+.||+
T Consensus 73 ~l~~~~~~~V---LeiG~GsG~~t~~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 73 LLELKPGDRV---LEIGTGSGYQAAVLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred hcCCCCCCEE---EEECCCccHHHHHHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCE
Confidence 3444555555 999999999999888876678885543 343332222 23 266777776443223478999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|++...+.+ +..++.+.|+|||.+++...
T Consensus 148 I~~~~~~~~---------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPE---------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCchh---------hhHHHHHhcCCCcEEEEEEc
Confidence 999876544 34667899999999988753
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=96.15 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~ 291 (392)
...++...+...++.+| ||+|||+|..+..+++. +..+++ +|++....+ .+.+.|. +.++++|...
T Consensus 238 ~s~lv~~~l~~~~g~~V---LDlgaG~G~~t~~la~~~~~~~~v~a--vDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~ 312 (444)
T PRK14902 238 SSMLVAPALDPKGGDTV---LDACAAPGGKTTHIAELLKNTGKVVA--LDIHEHKLKLIEENAKRLGLTNIETKALDARK 312 (444)
T ss_pred HHHHHHHHhCCCCCCEE---EEeCCCCCHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEeCCccc
Confidence 44556666666565555 99999999999999874 356777 455344433 2233342 6778888776
Q ss_pred CC-CCCCcccEEEEcccccc-----------c-CCchh-------HHHHHHHHHHcccCCcEEEEEeecccccchHHHHH
Q 047630 292 LP-FFDNTLDIVHSMHVLSN-----------W-IPTTL-------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYV 351 (392)
Q Consensus 292 Lp-f~d~sFDlV~s~~~l~~-----------~-~~~~~-------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~ 351 (392)
++ ...++||+|++...... | ..+.+ ...+|.++.++|||||.+++....-..++....+.
T Consensus 313 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~ 392 (444)
T PRK14902 313 VHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIE 392 (444)
T ss_pred ccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHH
Confidence 53 11278999997532111 0 01111 24689999999999999998764433334445566
Q ss_pred HHHHHc-CCeEEEE
Q 047630 352 PLIESV-GFNKLKW 364 (392)
Q Consensus 352 ~ll~~a-Gf~~i~w 364 (392)
..+++. +|+.+..
T Consensus 393 ~~l~~~~~~~~~~~ 406 (444)
T PRK14902 393 AFLEEHPEFELVPL 406 (444)
T ss_pred HHHHhCCCcEEecc
Confidence 677765 3776553
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.9e-08 Score=89.95 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=84.3
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh-----------------c-CCccEEEeccCcCCCC---CCc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS-----------------R-GVVPLYISISQRLPFF---DNT 298 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~-----------------r-g~i~~~~~d~~~Lpf~---d~s 298 (392)
||+.|||.|..+..|+++|..|+|+|++. ...+.+.+ + ..+.++++|+..++.. .+.
T Consensus 47 vLvPgCGkg~D~~~LA~~G~~V~GvDlS~--~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~ 124 (226)
T PRK13256 47 CLIPMCGCSIDMLFFLSKGVKVIGIELSE--KAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPV 124 (226)
T ss_pred EEEeCCCChHHHHHHHhCCCcEEEEecCH--HHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCC
Confidence 39999999999999999999999955443 33332211 1 1368889999988642 268
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------chHHHHHHHHHH
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------QLEDVYVPLIES 356 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------~l~~~l~~ll~~ 356 (392)
||+|+-..+++++ +++...+..+.+.++|+|||.+++..+..... -..+++++++..
T Consensus 125 fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~ 188 (226)
T PRK13256 125 FDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSA 188 (226)
T ss_pred cCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccC
Confidence 9999999999885 77888899999999999999997776532111 115567777654
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=90.41 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhCC-CCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhcCCccEEEeccCc-C
Q 047630 221 LDFSIDEVLATKK-PGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASRGVVPLYISISQR-L 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~-~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~rg~i~~~~~d~~~-L 292 (392)
.+.+++.++.... ...-..|||+|||+|.++..+++. +..++++|+|. ...+. +...+ +.++.+|... +
T Consensus 70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~--~al~~A~~N~~~~~-~~~~~~D~~~~l 146 (251)
T TIGR03704 70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP--AAVRCARRNLADAG-GTVHEGDLYDAL 146 (251)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcC-CEEEEeechhhc
Confidence 6777777665332 111124599999999999999874 55788855543 33332 22233 4778888654 2
Q ss_pred CC-CCCcccEEEEcccccccC-----Cc------------------hhHHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 293 PF-FDNTLDIVHSMHVLSNWI-----PT------------------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 293 pf-~d~sFDlV~s~~~l~~~~-----~~------------------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
+- ..++||+|+++-...... ++ +.++.++..+.++|||||++++...... ..
T Consensus 147 ~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~----~~ 222 (251)
T TIGR03704 147 PTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ----AP 222 (251)
T ss_pred chhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch----HH
Confidence 21 135799999985443110 00 1135788888999999999998854332 23
Q ss_pred HHHHHHHHcCCeE
Q 047630 349 VYVPLIESVGFNK 361 (392)
Q Consensus 349 ~l~~ll~~aGf~~ 361 (392)
.+..++++.||+.
T Consensus 223 ~v~~~l~~~g~~~ 235 (251)
T TIGR03704 223 LAVEAFARAGLIA 235 (251)
T ss_pred HHHHHHHHCCCCc
Confidence 4777888888754
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-07 Score=88.42 Aligned_cols=132 Identities=16% Similarity=0.088 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~ 291 (392)
...+...++...++.+| ||+|||+|..+..+++. .-.+++ +|++....+ .+.+.+ .+.++.+|...
T Consensus 59 ~s~~~~~~l~~~~g~~V---LDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~ 133 (264)
T TIGR00446 59 SSMIPPLALEPDPPERV---LDMAAAPGGKTTQISALMKNEGAIVA--NEFSKSRTKVLIANINRCGVLNVAVTNFDGRV 133 (264)
T ss_pred HHHHHHHHhCCCCcCEE---EEECCCchHHHHHHHHHcCCCCEEEE--EcCCHHHHHHHHHHHHHcCCCcEEEecCCHHH
Confidence 34445555656666666 99999999999988873 236777 555444443 233334 25677778777
Q ss_pred CCCCCCcccEEEEccccccc------------CCch-------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHH
Q 047630 292 LPFFDNTLDIVHSMHVLSNW------------IPTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352 (392)
Q Consensus 292 Lpf~d~sFDlV~s~~~l~~~------------~~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ 352 (392)
++...+.||.|++.-..... ..++ ...++|.++.+.|||||+++.+...-..++-++.+..
T Consensus 134 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~ 213 (264)
T TIGR00446 134 FGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDY 213 (264)
T ss_pred hhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHH
Confidence 66556679999974211110 0111 1246999999999999999888754444444555666
Q ss_pred HHHHc
Q 047630 353 LIESV 357 (392)
Q Consensus 353 ll~~a 357 (392)
.+++.
T Consensus 214 ~l~~~ 218 (264)
T TIGR00446 214 LLEKR 218 (264)
T ss_pred HHHhC
Confidence 66653
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6e-07 Score=81.63 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=84.9
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcC-CC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRL-PF 294 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~L-pf 294 (392)
+.-..|++.+++.+ +|||||||+.+..++.. .-++++ +|-+....+ ++++-| .+.++.+++-.. +
T Consensus 25 l~ls~L~~~~g~~l---~DIGaGtGsi~iE~a~~~p~~~v~A--Ie~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~- 98 (187)
T COG2242 25 LTLSKLRPRPGDRL---WDIGAGTGSITIEWALAGPSGRVIA--IERDEEALELIERNAARFGVDNLEVVEGDAPEALP- 98 (187)
T ss_pred HHHHhhCCCCCCEE---EEeCCCccHHHHHHHHhCCCceEEE--EecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-
Confidence 33344556677666 99999999999999954 456666 554333333 333334 256667765443 3
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCC-eEEEEEEee
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGF-NKLKWVVGR 368 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf-~~i~w~~~~ 368 (392)
...+||.|+.... -. ++.+|+.+...|||||++++....- +. .....+.+++.|+ +.++.....
T Consensus 99 ~~~~~daiFIGGg-~~------i~~ile~~~~~l~~ggrlV~naitl--E~-~~~a~~~~~~~g~~ei~~v~is~ 163 (187)
T COG2242 99 DLPSPDAIFIGGG-GN------IEEILEAAWERLKPGGRLVANAITL--ET-LAKALEALEQLGGREIVQVQISR 163 (187)
T ss_pred CCCCCCEEEECCC-CC------HHHHHHHHHHHcCcCCeEEEEeecH--HH-HHHHHHHHHHcCCceEEEEEeec
Confidence 2227999998776 23 3569999999999999998885433 22 2336678899999 666655443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=99.68 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=78.0
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
..|||+|||+|.++..++.. +..++++|+|. ...+. +...+ .+.++.+|... ++.+++||+|+++...
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~--~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISL--DAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 35699999999999998874 56788855443 33332 22223 25677777543 2345689999997433
Q ss_pred cccC--------------------Cc---hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 309 SNWI--------------------PT---TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 309 ~~~~--------------------~~---~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.... .. +....++.++.++|+|||.+++..-.. ..+.+.+++.+.||+.+..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~----q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK----QEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc----hHHHHHHHHHhcCCCceEE
Confidence 2100 01 123457889999999999998864332 2344777888899976644
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.3e-07 Score=93.91 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~ 291 (392)
...++..++...++..| ||+|||+|..+..+++. +..++++ |++..+.+. +.+.|. +.++.+|+..
T Consensus 238 ~s~l~~~~l~~~~g~~V---LDlgaG~G~kt~~la~~~~~~~~V~av--D~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~ 312 (445)
T PRK14904 238 TQALACLLLNPQPGSTV---LDLCAAPGGKSTFMAELMQNRGQITAV--DRYPQKLEKIRSHASALGITIIETIEGDARS 312 (445)
T ss_pred HHHHHHHhcCCCCCCEE---EEECCCCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHhCCCeEEEEeCcccc
Confidence 44455556655565555 99999999988888762 3478784 454444432 233342 5778888877
Q ss_pred CCCCCCcccEEEEc------cccc-----cc-CCchh-------HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHH
Q 047630 292 LPFFDNTLDIVHSM------HVLS-----NW-IPTTL-------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352 (392)
Q Consensus 292 Lpf~d~sFDlV~s~------~~l~-----~~-~~~~~-------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ 352 (392)
++ ++++||+|++. ..+. .| ..++. ...+|.++.++|||||++++....-..++-+..+..
T Consensus 313 ~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~ 391 (445)
T PRK14904 313 FS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEA 391 (445)
T ss_pred cc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHH
Confidence 65 56789999963 1111 01 11121 236899999999999999998865544444555677
Q ss_pred HHHHc-CCeEE
Q 047630 353 LIESV-GFNKL 362 (392)
Q Consensus 353 ll~~a-Gf~~i 362 (392)
.+++. +|+.+
T Consensus 392 ~l~~~~~~~~~ 402 (445)
T PRK14904 392 FLQRHPEFSAE 402 (445)
T ss_pred HHHhCCCCEEe
Confidence 77765 46544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-07 Score=93.58 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcCC-ccE--EEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRGV-VPL--YISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg~-i~~--~~~d~~~ 291 (392)
...++...+...++..| ||+|||+|..+..+++. +..+++ +|++..... .+.+.|. +.+ ..+|...
T Consensus 226 ~s~~~~~~L~~~~g~~V---LDlcag~G~kt~~la~~~~~~~v~a--~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~ 300 (426)
T TIGR00563 226 SAQWVATWLAPQNEETI---LDACAAPGGKTTHILELAPQAQVVA--LDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG 300 (426)
T ss_pred HHHHHHHHhCCCCCCeE---EEeCCCccHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 44555566666666555 99999999999999884 356777 555444443 2333342 122 4445544
Q ss_pred CCC--CCCcccEEEEc------ccccccC------Cch-------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHH
Q 047630 292 LPF--FDNTLDIVHSM------HVLSNWI------PTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVY 350 (392)
Q Consensus 292 Lpf--~d~sFDlV~s~------~~l~~~~------~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l 350 (392)
.++ .+++||.|++. .++++.. .+. ...++|.++.++|||||.|++++..-..++-...+
T Consensus 301 ~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v 380 (426)
T TIGR00563 301 PSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQI 380 (426)
T ss_pred ccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHH
Confidence 443 56789999963 2232210 111 13579999999999999999987655444445556
Q ss_pred HHHHHHc-CCe
Q 047630 351 VPLIESV-GFN 360 (392)
Q Consensus 351 ~~ll~~a-Gf~ 360 (392)
...+++. +|.
T Consensus 381 ~~~l~~~~~~~ 391 (426)
T TIGR00563 381 KAFLQEHPDFP 391 (426)
T ss_pred HHHHHhCCCCe
Confidence 6777765 343
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-08 Score=99.33 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=65.0
Q ss_pred cEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhcC----------------CccEEEeccCc------CCC
Q 047630 238 RIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASRG----------------VVPLYISISQR------LPF 294 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~rg----------------~i~~~~~d~~~------Lpf 294 (392)
..|||+|||-|.-...+...++ .++|+|++. ...+.+.+|- ...++.+|... ++.
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~--~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVGIDISE--ESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEEEeCCH--HHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 3459999999987777776554 577755433 3333333221 13456666442 222
Q ss_pred CCCcccEEEEccccccc-CCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 295 FDNTLDIVHSMHVLSNW-IPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~-~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
....||+|-|.+++|+. ..++..+.+|.++.+.|||||+|+.+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 33599999999999974 4566777899999999999999987754
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-07 Score=93.70 Aligned_cols=138 Identities=9% Similarity=0.102 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~ 291 (392)
...++..++...++.+| ||+|||+|..+.++++. +..++++| ++..... .+.+.|. +.+.++|...
T Consensus 225 ~s~~~~~~l~~~~g~~V---LD~cagpGgkt~~la~~~~~~g~V~a~D--is~~rl~~~~~n~~r~g~~~v~~~~~Da~~ 299 (431)
T PRK14903 225 SSQIVPLLMELEPGLRV---LDTCAAPGGKTTAIAELMKDQGKILAVD--ISREKIQLVEKHAKRLKLSSIEIKIADAER 299 (431)
T ss_pred HHHHHHHHhCCCCCCEE---EEeCCCccHHHHHHHHHcCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCeEEEEECchhh
Confidence 44555666666666655 99999999999888874 45788855 5344443 2333342 5677888877
Q ss_pred CC-CCCCcccEEEEccccc---ccC---------Cch-------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHH
Q 047630 292 LP-FFDNTLDIVHSMHVLS---NWI---------PTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYV 351 (392)
Q Consensus 292 Lp-f~d~sFDlV~s~~~l~---~~~---------~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~ 351 (392)
++ +.+++||.|++.-... .+. +++ ...++|.++.+.|||||+++++...-..++..+.+.
T Consensus 300 l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~ 379 (431)
T PRK14903 300 LTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVK 379 (431)
T ss_pred hhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHH
Confidence 76 4567899999742111 110 111 225679999999999999999886655555556677
Q ss_pred HHHHHc-CCeEEE
Q 047630 352 PLIESV-GFNKLK 363 (392)
Q Consensus 352 ~ll~~a-Gf~~i~ 363 (392)
..+++. +|+.+.
T Consensus 380 ~fl~~~~~~~~~~ 392 (431)
T PRK14903 380 RFVYEQKDAEVID 392 (431)
T ss_pred HHHHhCCCcEEec
Confidence 777653 566544
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=90.78 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=70.9
Q ss_pred cEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-HHHhc-------C-----CccEEEeccC------cCCCCCC
Q 047630 238 RIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-FIASR-------G-----VVPLYISISQ------RLPFFDN 297 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-~aa~r-------g-----~i~~~~~d~~------~Lpf~d~ 297 (392)
..++|+|||-|.-+...-+.|. ..+| +|+ ++.+. .+.+| . .+.|+.+|.. .+++.+.
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~ig--iDI-AevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIG--IDI-AEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEe--eeh-hhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 3349999999998887777665 4666 555 44443 22222 1 1467777743 3566777
Q ss_pred cccEEEEcccccc-cCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 298 TLDIVHSMHVLSN-WIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 298 sFDlV~s~~~l~~-~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+||+|-|.+++|. |...+....+|+++.+.|||||+|+-+.
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 7999999999985 5566777889999999999999998764
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=88.70 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=90.0
Q ss_pred ccEEEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhHHHHHhc---CC-ccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 237 IRIGLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFNNFIASR---GV-VPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~~~aa~r---g~-i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
...++|||||.|.+...+...++. ++- +|.+..+.+..+.. ++ ....++|-+.++|.+++||+|+++..+|..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~--~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIM--MDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheee--eecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 455699999999999999998864 344 45545555544433 22 455688999999999999999999999766
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeeccc--------------------------ccchHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV--------------------------GAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~--------------------------~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
.++...+..+...|||+|.|+-.-+... -.. ...+-.++.++||..+...
T Consensus 151 ---NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~q-vrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 151 ---NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQ-VRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred ---ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhh-hhhhhhHHhhcCcccceec
Confidence 4455689999999999999965543210 000 3347788999999877654
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-07 Score=81.42 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=67.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEcc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
+.++..+ ||+|||+|.++..+++++..++++|+|. ...+.+.++ ..++++.+|+..+++++..||.|+++.
T Consensus 11 ~~~~~~v---LEiG~G~G~lt~~l~~~~~~v~~vE~~~--~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 11 LRPGDTV---LEIGPGKGALTEELLERAARVTAIEIDP--RLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CCCcCEE---EEECCCccHHHHHHHhcCCeEEEEECCH--HHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC
Confidence 3344445 9999999999999999988898866553 444433332 246789999999988877899999987
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.++. ..+.+..++.+. .+.++|.|++..
T Consensus 86 Py~~--~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNI--STPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred Cccc--HHHHHHHHHhcC--CCcceEEEEEEH
Confidence 6542 223333333321 245888887775
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.1e-07 Score=89.01 Aligned_cols=94 Identities=16% Similarity=0.097 Sum_probs=63.8
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHH----HhcC--CccEEEeccCcCCCCCCccc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFI----ASRG--VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~a----a~rg--~i~~~~~d~~~Lpf~d~sFD 300 (392)
.+.++.++ ||+|||+|.++..+++.. ..|+++ |++....+.+ .+.+ .+.++.+|....+...+.||
T Consensus 77 ~i~~g~~V---LDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 77 GLDKGMRV---LEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCCEE---EEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCcc
Confidence 34455555 999999999999999843 257774 4534444322 2233 25677888766555557899
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+|++...+.+ +...+.+.|+|||.+++.
T Consensus 152 ~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 152 VIFVTVGVDE---------VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred EEEECCchHH---------hHHHHHHhcCCCCEEEEE
Confidence 9999866543 234577899999998775
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=86.93 Aligned_cols=123 Identities=19% Similarity=0.312 Sum_probs=89.6
Q ss_pred cccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh---cCCccEEEecc-CcCCCCCCcccEEEEccccccc
Q 047630 236 TIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS---RGVVPLYISIS-QRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~---rg~i~~~~~d~-~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.+...+|+|.|.|+.+..+....+.+-++..|+ +....++. .| ++.+.+|. ++.| .+ |+|++.+++|||
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdl--p~v~~~a~~~~~g-V~~v~gdmfq~~P--~~--daI~mkWiLhdw 249 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDL--PFVLAAAPYLAPG-VEHVAGDMFQDTP--KG--DAIWMKWILHDW 249 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCH--HHHHhhhhhhcCC-cceecccccccCC--Cc--CeEEEEeecccC
Confidence 467789999999999999999777787855554 44433322 33 56666664 3444 33 699999999998
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccc---------------------------hHHHHHHHHHHcCCeEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------------------------LEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------------------------l~~~l~~ll~~aGf~~i~w 364 (392)
.|++ ..++|++++..|+|||.+++.+...+.+. ..++++..+.++||.....
T Consensus 250 tDed-cvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~ 328 (342)
T KOG3178|consen 250 TDED-CVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMV 328 (342)
T ss_pred ChHH-HHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEE
Confidence 6644 56899999999999999988876332211 1667888888888888776
Q ss_pred EE
Q 047630 365 VV 366 (392)
Q Consensus 365 ~~ 366 (392)
..
T Consensus 329 ~~ 330 (342)
T KOG3178|consen 329 AL 330 (342)
T ss_pred Ee
Confidence 63
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-07 Score=83.60 Aligned_cols=119 Identities=19% Similarity=0.303 Sum_probs=75.2
Q ss_pred EEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH----HHHhcC--CccEEEeccCc-C--CCCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN----FIASRG--VVPLYISISQR-L--PFFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~-L--pf~d~sFDlV~s~~~ 307 (392)
++||||||.|.+...+|+..+ .++| +|+...... .+.+.+ .+.++.+|+.. + -++++++|.|+..+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iG--iE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIG--IEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEE--EES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEE--EecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 569999999999999999654 5566 555444443 223334 36788888766 2 245789999998764
Q ss_pred ccccCCch------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHc--CCeEEE
Q 047630 308 LSNWIPTT------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESV--GFNKLK 363 (392)
Q Consensus 308 l~~~~~~~------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~a--Gf~~i~ 363 (392)
= .|.... --..++..+.++|+|||.|.+.. +..+..+...+.+++. +|+.+.
T Consensus 98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T---D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 D-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT---DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE---S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred C-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe---CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 3 332211 12468999999999999996653 3445555566677774 677653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.2e-06 Score=85.85 Aligned_cols=135 Identities=14% Similarity=0.094 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCc---
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQR--- 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~--- 291 (392)
.+.+++.+++......-..|||+|||+|.++..+++.+..++++|++ ..+.+.+. ..+ .+.++.+|+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s--~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGV--EAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 45566666553321111234999999999999999988888885544 44443222 223 36788888654
Q ss_pred -CCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 292 -LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 292 -Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+++.+++||+|++.-.... +..++..+.+ ++|+++++++--. ..+...+. .+.+.||+..+.....
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g------~~~~~~~l~~-~~~~~ivyvSCnp---~tlaRDl~-~L~~~gY~l~~i~~~D 426 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG------AAEVMQALAK-LGPKRIVYVSCNP---ATLARDAG-VLVEAGYRLKRAGMLD 426 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC------hHHHHHHHHh-cCCCeEEEEEeCh---HHhhccHH-HHhhCCcEEEEEEEec
Confidence 3455678999998654322 2345555555 6999999888522 22223244 3456799988777654
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-07 Score=84.61 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=62.1
Q ss_pred HHHhhCCCCcccEEEEEcCCcchHHHHHHHc-CC--EEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCC
Q 047630 227 EVLATKKPGTIRIGLDIGGGVATFAVRMMER-NI--TIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDN 297 (392)
Q Consensus 227 ~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~--~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~ 297 (392)
+.+.+.++.++ ||||||+|++++.|+.. +. .|++++ .+....+.+.+ .+ .+.++++|...---...
T Consensus 66 ~~L~l~pg~~V---LeIGtGsGY~aAlla~lvg~~g~Vv~vE--~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 66 EALDLKPGDRV---LEIGTGSGYQAALLAHLVGPVGRVVSVE--RDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHTTC-TT-EE---EEES-TTSHHHHHHHHHHSTTEEEEEEE--SBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred HHHhcCCCCEE---EEecCCCcHHHHHHHHhcCccceEEEEC--ccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence 34457777777 99999999999999983 33 467744 43333332222 23 36788888654322456
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.||.|++..+.... -..+.+.||+||++++-.
T Consensus 141 pfD~I~v~~a~~~i---------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 141 PFDRIIVTAAVPEI---------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp SEEEEEESSBBSS-----------HHHHHTEEEEEEEEEEE
T ss_pred CcCEEEEeeccchH---------HHHHHHhcCCCcEEEEEE
Confidence 89999999877442 255778899999998763
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=80.81 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cCC--ccEEEeccCc-CC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RGV--VPLYISISQR-LP 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg~--i~~~~~d~~~-Lp 293 (392)
....+-+++.+.++.+| ||||||+|+.++-|++..-.|++++.+ ....+.+.+ .|. +.+.++|... +|
T Consensus 60 ~vA~m~~~L~~~~g~~V---LEIGtGsGY~aAvla~l~~~V~siEr~--~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLELKPGDRV---LEIGTGSGYQAAVLARLVGRVVSIERI--EELAEQARRNLETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCCCCCCeE---EEECCCchHHHHHHHHHhCeEEEEEEc--HHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence 33444556667787777 999999999999999976688885533 333333322 232 6778888543 44
Q ss_pred CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
....||.|+...+.... + ..+.+-||+||++++-.-
T Consensus 135 -~~aPyD~I~Vtaaa~~v-P--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 -EEAPYDRIIVTAAAPEV-P--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -CCCCcCEEEEeeccCCC-C--------HHHHHhcccCCEEEEEEc
Confidence 45789999998776542 1 445678999999988754
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.5e-06 Score=84.41 Aligned_cols=129 Identities=14% Similarity=0.086 Sum_probs=82.1
Q ss_pred cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh--------c-----CCccEEEeccCc-CCCCCCcc
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS--------R-----GVVPLYISISQR-LPFFDNTL 299 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~--------r-----g~i~~~~~d~~~-Lpf~d~sF 299 (392)
+.+.||+||||+|..+..+.+.. ..++++++| +...+.+.+ + ..+.++++|+.. +.-.+++|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID--peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLD--GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC--HHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34556999999999998888854 467775544 444444332 1 136677787665 34446789
Q ss_pred cEEEEcccccccC---CchhHHHHHHHHHHcccCCcEEEEEeeccc-ccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 300 DIVHSMHVLSNWI---PTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-GAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 300 DlV~s~~~l~~~~---~~~~l~~~L~el~RvLKPGG~lii~~~~~~-~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
|+|++... .... ..-.-.++++.+++.|+|||++++..-... .......+.+.++++|+........
T Consensus 228 DVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374)
T PRK01581 228 DVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI 298 (374)
T ss_pred cEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe
Confidence 99998742 1111 111224689999999999999977642111 1112233677889999988766644
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=81.70 Aligned_cols=117 Identities=13% Similarity=0.157 Sum_probs=73.3
Q ss_pred EEEEcCCcchHHHHHHHc-----CCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 240 GLDIGGGVATFAVRMMER-----NITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~-----g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
|||+|||+|.++..++++ ...++++++|. .....+.++- .+.++.+|+...++ +++||+|+++-.+.....
T Consensus 53 VLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~--~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 53 VVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH--TYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKT 129 (241)
T ss_pred EEEccChHHHHHHHHHHhcccCCCcEEEEEECCH--HHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccc
Confidence 499999999999988763 45788855443 3333333321 36788888877664 568999999976653221
Q ss_pred c---------hhHHHHHHHHHHcccCCcEEEEEe---e-------ccccc-chHHHHHHHHHHcCC
Q 047630 314 T---------TLLHFLMFDIYRVLRPGGLFWLDH---F-------FCVGA-QLEDVYVPLIESVGF 359 (392)
Q Consensus 314 ~---------~~l~~~L~el~RvLKPGG~lii~~---~-------~~~~~-~l~~~l~~ll~~aGf 359 (392)
. .....++..+.|++++|+.++=.. | +...+ .--..+.+..++.|.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGL 195 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeeccCcccHHHHHHHHhcCe
Confidence 1 124458888899777777642111 1 11111 113447777888774
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.7e-06 Score=82.59 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=100.4
Q ss_pred cccccceeccCCCC-cHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C
Q 047630 206 GVEKIRWTQKKGNG-GLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G 280 (392)
Q Consensus 206 ~~e~~~w~~~~~~~-~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g 280 (392)
..+++.|+.++.-. .+...+-.+....+|+.+ ||==||||.++....-.|..++|+|+|. .+..-+..+ +
T Consensus 169 ~~~kRPf~~p~s~~P~lAR~mVNLa~v~~G~~v---lDPFcGTGgiLiEagl~G~~viG~Did~--~mv~gak~Nl~~y~ 243 (347)
T COG1041 169 DPEKRPFFRPGSMDPRLARAMVNLARVKRGELV---LDPFCGTGGILIEAGLMGARVIGSDIDE--RMVRGAKINLEYYG 243 (347)
T ss_pred CcccCCccCcCCcCHHHHHHHHHHhccccCCEe---ecCcCCccHHHHhhhhcCceEeecchHH--HHHhhhhhhhhhhC
Confidence 34556677665421 134444455556666667 9999999999999998999999965443 333322211 2
Q ss_pred C--ccEEEe-ccCcCCCCCCcccEEEEccccccc--CC----chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHH
Q 047630 281 V--VPLYIS-ISQRLPFFDNTLDIVHSMHVLSNW--IP----TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYV 351 (392)
Q Consensus 281 ~--i~~~~~-d~~~Lpf~d~sFDlV~s~~~l~~~--~~----~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~ 351 (392)
. ..+... |+..+|+++++||.|++-...--- .. .+-..++|+.+.++||+||++++..... ..
T Consensus 244 i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~--------~~ 315 (347)
T COG1041 244 IEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD--------PR 315 (347)
T ss_pred cCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc--------ch
Confidence 1 233444 899999999999999986433211 11 2346788999999999999998876532 33
Q ss_pred HHHHHcCCeEEEEEEee
Q 047630 352 PLIESVGFNKLKWVVGR 368 (392)
Q Consensus 352 ~ll~~aGf~~i~w~~~~ 368 (392)
..+++.||+++.-....
T Consensus 316 ~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 316 HELEELGFKVLGRFTMR 332 (347)
T ss_pred hhHhhcCceEEEEEEEe
Confidence 45788899988655443
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=83.35 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=72.6
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-------CCccEEEeccCcC-CCCCCcccEEEEccc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-------GVVPLYISISQRL-PFFDNTLDIVHSMHV 307 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-------g~i~~~~~d~~~L-pf~d~sFDlV~s~~~ 307 (392)
+.|||||||+|.++..+++. +..++++++| ....+.+.+. ..+.++++|...+ .-..++||+|++..
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid--p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN--PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 44599999999999999875 4567775544 3444433322 2367788886442 22346899999752
Q ss_pred ccccCCc--hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe
Q 047630 308 LSNWIPT--TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN 360 (392)
Q Consensus 308 l~~~~~~--~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~ 360 (392)
++.-..+ -....+++++.++|+|||++++..+.. ...... +.+.+++. |.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~-~~~~~~-~l~~l~~~-F~ 196 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR-DKRYDR-YLERLESS-FE 196 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC-chhHHH-HHHHHHHh-cC
Confidence 2211111 122579999999999999999864433 222323 44455554 65
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.6e-06 Score=80.93 Aligned_cols=116 Identities=12% Similarity=0.038 Sum_probs=73.4
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcCCC-CCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRLPF-FDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~Lpf-~d~sFDlV~s~~~l~~~ 311 (392)
.|||+|||+|.++..+++.+..|+|+|++. ...+. +...+ .+.++++|+..+.. .++.||+|++.-.-
T Consensus 176 ~VLDl~cG~G~~sl~la~~~~~V~gvD~s~--~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr--- 250 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCATPGMQLTGIEISA--EAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR--- 250 (315)
T ss_pred EEEEccCCCCHHHHHHHhcCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC---
Confidence 459999999999999999998999955543 43332 22334 26788998876542 34579999987432
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
..+...+.++...++|+++++++.-.. .+...+..+ .||+..+.....
T Consensus 251 ---~G~~~~~~~~l~~~~~~~ivyvsc~p~---t~~rd~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 251 ---RGIGKELCDYLSQMAPRFILYSSCNAQ---TMAKDLAHL---PGYRIERVQLFD 298 (315)
T ss_pred ---CCccHHHHHHHHHcCCCeEEEEECCcc---cchhHHhhc---cCcEEEEEEEec
Confidence 221122333444478888888775332 222334433 588877766553
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-06 Score=79.32 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=59.6
Q ss_pred CcccEEEEEcCCcch----HHHHHHH-----c--CCEEEEEecCCCchhHHHHHhcC-----------------------
Q 047630 235 GTIRIGLDIGGGVAT----FAVRMME-----R--NITIVTTSMNLNGPFNNFIASRG----------------------- 280 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~----~a~~La~-----~--g~~vvg~~iD~~a~~~~~aa~rg----------------------- 280 (392)
..+ .|+.+||++|. +|..+.+ . .+.+.|+|+|. ...+. |++|
T Consensus 31 ~~l-rIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~--~~L~~-Ar~G~Y~~~~~~~~~~~~~~ryf~~~~ 106 (196)
T PF01739_consen 31 RPL-RIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP--SALEK-ARAGIYPERSLRGLPPAYLRRYFTERD 106 (196)
T ss_dssp S-E-EEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H--HHHHH-HHHTEEEGGGGTTS-HHHHHHHEEEE-
T ss_pred CCe-EEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH--HHHHH-HHhCCCCHHHHhhhHHHHHHHhccccC
Confidence 444 44999999996 4445555 1 25788877664 32221 1111
Q ss_pred ------------CccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 281 ------------VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 281 ------------~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+.|...+..+.+...+.||+|+|.+++.++ +++....+++.+++.|+|||+|++.+
T Consensus 107 ~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 107 GGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1566666665534456789999999999986 55666899999999999999999885
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.2e-06 Score=88.31 Aligned_cols=122 Identities=12% Similarity=0.076 Sum_probs=79.3
Q ss_pred ccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc-------------CCccEEEeccCcC-CCCCCccc
Q 047630 237 IRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR-------------GVVPLYISISQRL-PFFDNTLD 300 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r-------------g~i~~~~~d~~~L-pf~d~sFD 300 (392)
.++|||||||+|..+..+.++. .+++++|+| ....+.+.++ ..++++.+|..+. ...+++||
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid--~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD--PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC--HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3456999999999999988864 478885544 4555444431 1356777886653 33457899
Q ss_pred EEEEcccccccCCc---hhHHHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeE
Q 047630 301 IVHSMHVLSNWIPT---TLLHFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 301 lV~s~~~l~~~~~~---~~l~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~ 361 (392)
+|++...-.. .+. -.-+++++.+.+.|||||.+++..... ...+....+.+.+++.||..
T Consensus 376 vIi~D~~~~~-~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDLPDPS-NPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeCCCCC-CcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 9999754321 111 112458899999999999998864211 11222345788899999933
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.5e-06 Score=91.92 Aligned_cols=126 Identities=15% Similarity=0.068 Sum_probs=81.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC----CccEEEeccCcC-CCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG----VVPLYISISQRL-PFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg----~i~~~~~d~~~L-pf~d~sFD 300 (392)
+.++.+| ||+|||+|.++..++..|. .|+++|++ ....+ ++..++ .+.++.+|+.+. .-..++||
T Consensus 536 ~~~g~rV---LDlf~gtG~~sl~aa~~Ga~~V~~vD~s--~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 536 MAKGKDF---LNLFAYTGTASVHAALGGAKSTTTVDMS--NTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred hcCCCeE---EEcCCCCCHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcC
Confidence 3444555 9999999999999999876 58885544 33333 233333 256788886542 11256899
Q ss_pred EEEEcccccc--------cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 301 IVHSMHVLSN--------WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 301 lV~s~~~l~~--------~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+|++.-.... +........++..+.++|+|||.+++......... -.+.+.++|++.....
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~----~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM----DEEGLAKLGLKAEEIT 679 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh----hHHHHHhCCCeEEEEe
Confidence 9999743211 11123456788899999999999988754332221 2567788897765444
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.6e-06 Score=79.11 Aligned_cols=108 Identities=11% Similarity=0.100 Sum_probs=71.3
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcC---CccEEEeccCc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQR 291 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~ 291 (392)
..++..+..+.+..++ ||+|||+|+-+..++.. +..++++|+| ....+ .+++.| .++++.+++.+
T Consensus 57 g~~L~~l~~~~~~~~v---LEiGt~~G~s~l~la~~~~~~g~v~tiD~d--~~~~~~A~~n~~~~gl~~~i~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLVKIMNAKNT---LEIGVFTGYSLLTTALALPEDGRITAIDID--KEAYEVGLEFIKKAGVDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHHHhCCCEE---EEecCcccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence 3345555556555555 99999999988877762 3477775544 34333 233334 36788887654
Q ss_pred C-C-----CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 292 L-P-----FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 292 L-p-----f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
. + .++++||+|+.... ......++.++.+.|||||++++++..
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 3 1 12468999987432 233456889999999999999988743
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-06 Score=82.90 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=66.1
Q ss_pred ccEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHh-----------cCCccEEEeccCcC-CCCCCcccEE
Q 047630 237 IRIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIAS-----------RGVVPLYISISQRL-PFFDNTLDIV 302 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~-----------rg~i~~~~~d~~~L-pf~d~sFDlV 302 (392)
.+.|||||||+|..+..+.+. + ..++++++|. ...+.+.+ ...+.++.+|+..+ ...+++||+|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 445699999999999999885 4 3688855554 43332221 12357788886543 3356789999
Q ss_pred EEcccccccCCchh--HHHHHHHHHHcccCCcEEEEE
Q 047630 303 HSMHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 303 ~s~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~ 337 (392)
++...- ++.+... .+++++.+.+.|+|||++++.
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986432 2222222 257889999999999999875
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.5e-06 Score=76.70 Aligned_cols=96 Identities=18% Similarity=0.302 Sum_probs=61.4
Q ss_pred EEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHhcCC--------cc--------------------------
Q 047630 240 GLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIASRGV--------VP-------------------------- 283 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~rg~--------i~-------------------------- 283 (392)
+|||||-.|.++..+++. + -.++|+|||. ...+.|.+.-. +.
T Consensus 62 ~LDIGCNsG~lt~~iak~F~~r~iLGvDID~--~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~ 139 (288)
T KOG2899|consen 62 ALDIGCNSGFLTLSIAKDFGPRRILGVDIDP--VLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTT 139 (288)
T ss_pred eEeccCCcchhHHHHHHhhccceeeEeeccH--HHHHHHHHhccccccccccccCCCccccccccccccccccccccccc
Confidence 499999999999999983 3 3477755553 33333332210 00
Q ss_pred ------------EEEeccCcCCCCCCcccEEEEcccc----cccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 284 ------------LYISISQRLPFFDNTLDIVHSMHVL----SNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 284 ------------~~~~d~~~Lpf~d~sFDlV~s~~~l----~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
++.....-+.+....||+|+|..+- -+| .++.+..+++.+.+.|.|||+|++..
T Consensus 140 ~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNw-gD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 140 DFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNW-GDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccc-ccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 0000111122345689999986432 233 34677899999999999999999985
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=76.92 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=90.1
Q ss_pred CCcccEEEEEcCCcchHHHHHHHcC----CEEEEEecCCCchhHH----HHHhcCC---ccEEEeccCcC---CCCCCcc
Q 047630 234 PGTIRIGLDIGGGVATFAVRMMERN----ITIVTTSMNLNGPFNN----FIASRGV---VPLYISISQRL---PFFDNTL 299 (392)
Q Consensus 234 ~~~ir~VLDIGCGtG~~a~~La~~g----~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~~L---pf~d~sF 299 (392)
+..| .||||.||.|++.....+.. ..+... |.+....+ .++++|+ +.|..+|+.+. .--+...
T Consensus 134 g~pv-rIlDIAaG~GRYvlDal~~~~~~~~~i~Lr--Dys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 134 GRPV-RILDIAAGHGRYVLDALEKHPERPDSILLR--DYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CCce-EEEEeccCCcHHHHHHHHhCCCCCceEEEE--eCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCC
Confidence 3444 44999999999776665532 345553 44223322 5667764 58888886543 2224457
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe--eccccc-------------------chHHHHHHHHHHcC
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH--FFCVGA-------------------QLEDVYVPLIESVG 358 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~--~~~~~~-------------------~l~~~l~~ll~~aG 358 (392)
++++.+..+..+.+.+.+...+..+.+++.|||+++.+. +...-+ .-..++.++++++|
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG 290 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG 290 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcC
Confidence 999999999888887878889999999999999998886 221111 11677999999999
Q ss_pred CeEEEEE
Q 047630 359 FNKLKWV 365 (392)
Q Consensus 359 f~~i~w~ 365 (392)
|+++...
T Consensus 291 F~K~~q~ 297 (311)
T PF12147_consen 291 FEKIDQR 297 (311)
T ss_pred Cchhhhe
Confidence 9987655
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.6e-06 Score=93.10 Aligned_cols=140 Identities=14% Similarity=0.040 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhCCCC--cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHH--HHHhcC--------------
Q 047630 221 LDFSIDEVLATKKPG--TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNN--FIASRG-------------- 280 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~--~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~--~aa~rg-------------- 280 (392)
.+.+++. +...+.. +-..|||+|||+|.++..+++.. ..++++|++..+-..+ ++..++
T Consensus 102 TE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~ 180 (1082)
T PLN02672 102 SFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGK 180 (1082)
T ss_pred HHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccc
Confidence 5666666 3332221 11245999999999999999854 5788866554222111 232211
Q ss_pred ----CccEEEeccCcCCCC-CCcccEEEEcccccccC--------------------------------Cch---hHHHH
Q 047630 281 ----VVPLYISISQRLPFF-DNTLDIVHSMHVLSNWI--------------------------------PTT---LLHFL 320 (392)
Q Consensus 281 ----~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~--------------------------------~~~---~l~~~ 320 (392)
.+.++.+|.....-. ...||+|+++-....-. +.+ -.+.+
T Consensus 181 ~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i 260 (1082)
T PLN02672 181 TLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 260 (1082)
T ss_pred cccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHH
Confidence 267788886543211 23699999985432100 011 12568
Q ss_pred HHHHHHcccCCcEEEEEeecccccchHHHHH-HHHHHcCCeEE-EEE
Q 047630 321 MFDIYRVLRPGGLFWLDHFFCVGAQLEDVYV-PLIESVGFNKL-KWV 365 (392)
Q Consensus 321 L~el~RvLKPGG~lii~~~~~~~~~l~~~l~-~ll~~aGf~~i-~w~ 365 (392)
+.++.++|||||.+++..-..+.+ .+. +++++.||+.+ .|.
T Consensus 261 ~~~a~~~L~pgG~l~lEiG~~q~~----~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 261 VEEGISVIKPMGIMIFNMGGRPGQ----AVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred HHHHHHhccCCCEEEEEECccHHH----HHHHHHHHHCCCCeeEEee
Confidence 888999999999999886544333 355 58888999874 454
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=85.71 Aligned_cols=98 Identities=15% Similarity=0.280 Sum_probs=68.7
Q ss_pred cEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-HHHhcC---CccEEEeccCcCCCCCCcccEEEEcccccccC
Q 047630 238 RIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-FIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
++|||+|||||.++..-++.|+ .|++++.+--+.... .+..++ .++++.+.++++.+|.+..|+|++-+.-....
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll 141 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLL 141 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHH
Confidence 3459999999999999999875 577755332122222 233333 37888888888777788999999976554433
Q ss_pred CchhHHHHHHHHHHcccCCcEEE
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~li 335 (392)
-+..+..+|..=.+.|+|||.++
T Consensus 142 ~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 142 YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HhhhhhhhhhhhhhccCCCceEc
Confidence 34455567777789999999984
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-06 Score=83.49 Aligned_cols=95 Identities=23% Similarity=0.234 Sum_probs=72.7
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCc-cEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVV-PLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i-~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
++|+|||.|.+...- ...-+++ .|+ .......+++... ....+|+..+|+.+.+||.+++..++||+......+
T Consensus 49 ~~d~gCGngky~~~~--p~~~~ig--~D~-c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~ 123 (293)
T KOG1331|consen 49 GLDVGCGNGKYLGVN--PLCLIIG--CDL-CTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRE 123 (293)
T ss_pred eeecccCCcccCcCC--Ccceeee--cch-hhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHH
Confidence 599999999865421 2223444 555 3333344444333 578899999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCcEEEEEee
Q 047630 319 FLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~ 339 (392)
.+++|+.|+|||||...+..+
T Consensus 124 ~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 124 RALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred HHHHHHHHHhcCCCceEEEEe
Confidence 999999999999998766554
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.5e-06 Score=77.36 Aligned_cols=123 Identities=18% Similarity=0.217 Sum_probs=83.0
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH-cCC--EEEEEecCCCchhHHHHHhc----C---CccEEEeccCcC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME-RNI--TIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRL 292 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~--~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~L 292 (392)
.+|-..+++.++.+| ||.|.|+|.++++|+. .|. ++++ .++..+..+.|.++ + .+.+..+|+.+.
T Consensus 84 ~~I~~~~gi~pg~rV---lEAGtGSG~lt~~La~~vg~~G~v~t--yE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 84 GYIVARLGISPGSRV---LEAGTGSGALTAYLARAVGPEGHVTT--YEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred HHHHHHcCCCCCCEE---EEcccCchHHHHHHHHhhCCCceEEE--EEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 355556678888888 9999999999999996 444 4555 55655666544333 2 256667777776
Q ss_pred CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 293 PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
-+.+ .||+|+.-. ...| .++..++++|||||.+++... .-++..+ ..+.+++.||..+
T Consensus 159 ~~~~-~vDav~LDm-p~PW-------~~le~~~~~Lkpgg~~~~y~P--~veQv~k-t~~~l~~~g~~~i 216 (256)
T COG2519 159 IDEE-DVDAVFLDL-PDPW-------NVLEHVSDALKPGGVVVVYSP--TVEQVEK-TVEALRERGFVDI 216 (256)
T ss_pred cccc-ccCEEEEcC-CChH-------HHHHHHHHHhCCCcEEEEEcC--CHHHHHH-HHHHHHhcCccch
Confidence 5555 899998532 2222 589999999999999866532 2334444 4445666688665
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4e-06 Score=81.88 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=44.4
Q ss_pred ccEEEeccCcCCCC-CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 282 VPLYISISQRLPFF-DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 282 i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|.|...+....+++ .+.||+|+|.+++.++ +++....+++.+++.|+|||+|++.+
T Consensus 206 V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 206 VDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 45555565554443 5789999999999986 55667899999999999999998875
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-05 Score=75.13 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhCC----CCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhH---HHHHhc----CC--------
Q 047630 221 LDFSIDEVLATKK----PGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN---NFIASR----GV-------- 281 (392)
Q Consensus 221 ~~~lI~~ll~l~~----~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~---~~aa~r----g~-------- 281 (392)
.+.+++.+....+ ...-..||--|||.|+++..++.+|..+.|.+.+. -+. .++... +.
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~--~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSY--FMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchH--HHHHHHHHHHcccCCCCcEEEeccee
Confidence 4556666655543 11123459999999999999999999999955443 222 122211 10
Q ss_pred -------------------------------ccEEEeccCcCCCCC---CcccEEEEcccccccCCchhHHHHHHHHHHc
Q 047630 282 -------------------------------VPLYISISQRLPFFD---NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRV 327 (392)
Q Consensus 282 -------------------------------i~~~~~d~~~Lpf~d---~sFDlV~s~~~l~~~~~~~~l~~~L~el~Rv 327 (392)
+....+|...+...+ ++||+|++.+.+.- ..++-+.+..|.++
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~l 191 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHL 191 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHH
Confidence 112223333332233 79999999876643 36677899999999
Q ss_pred ccCCcEEEEEe-----eccc--c----cch-HHHHHHHHHHcCCeEEEEEE
Q 047630 328 LRPGGLFWLDH-----FFCV--G----AQL-EDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 328 LKPGG~lii~~-----~~~~--~----~~l-~~~l~~ll~~aGf~~i~w~~ 366 (392)
|||||+++=.. +... . -++ .+++..++++.||+.++.+.
T Consensus 192 LkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 192 LKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred hccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 99999553222 2211 0 111 67799999999999998886
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=9e-06 Score=82.93 Aligned_cols=122 Identities=10% Similarity=0.023 Sum_probs=75.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcCC----ccEEEeccCcCC----CCCC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRGV----VPLYISISQRLP----FFDN 297 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg~----i~~~~~d~~~Lp----f~d~ 297 (392)
+.++.++ ||+|||+|.++...+..+. .|+++|+| ....+ .+..++. +.++.+|+..+- ...+
T Consensus 218 ~~~g~rV---LDlfsgtG~~~l~aa~~ga~~V~~VD~s--~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 218 YVENKRV---LNCFSYTGGFAVSALMGGCSQVVSVDTS--QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred hcCCCeE---EEeccCCCHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCC
Confidence 3344455 9999999999987766654 78885544 33333 3333342 467888866531 1356
Q ss_pred cccEEEEcccccccCCc-------hhHHHHHHHHHHcccCCcEEEEEeec--ccccchHHHHHHHHHHcC
Q 047630 298 TLDIVHSMHVLSNWIPT-------TLLHFLMFDIYRVLRPGGLFWLDHFF--CVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~-------~~l~~~L~el~RvLKPGG~lii~~~~--~~~~~l~~~l~~ll~~aG 358 (392)
+||+|++.-.... ... .....++..+.++|+|||.|+..... -..+...+.+.+...++|
T Consensus 293 ~fDlVilDPP~f~-~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~ 361 (396)
T PRK15128 293 KFDVIVMDPPKFV-ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAG 361 (396)
T ss_pred CCCEEEECCCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcC
Confidence 8999998754321 111 13445666788999999999876532 223444555556666665
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=77.16 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=67.0
Q ss_pred CcccEEEEEcCCcch----HHHHHHHc-------CCEEEEEecCCCchhHH-------HHHhcCC---------------
Q 047630 235 GTIRIGLDIGGGVAT----FAVRMMER-------NITIVTTSMNLNGPFNN-------FIASRGV--------------- 281 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~----~a~~La~~-------g~~vvg~~iD~~a~~~~-------~aa~rg~--------------- 281 (392)
+.+ +|.-+||+||. +|..+.+. .+.++|+|+|..+-..+ ....+++
T Consensus 96 ~~i-rIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPI-RIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred Cce-EEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 344 44999999996 45555552 36788877765221111 0010110
Q ss_pred -----------ccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 282 -----------VPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 282 -----------i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|.|...+...-++..+.||+|+|-+++..+ +.+...+++..++..|+|||+|++.+
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 334444433333256679999999999986 55666899999999999999999885
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.4e-05 Score=71.08 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=83.3
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC---CCCcccEEEEcccccccCCch
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF---FDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf---~d~sFDlV~s~~~l~~~~~~~ 315 (392)
.+|||||=+......-. .-.+|+.+|++... -.+...|+-..|. .++.||+|.++.+|..+.++.
T Consensus 54 rlLEVGals~~N~~s~~-~~fdvt~IDLns~~-----------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 54 RLLEVGALSTDNACSTS-GWFDVTRIDLNSQH-----------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred eEEeecccCCCCccccc-CceeeEEeecCCCC-----------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 34999997655443321 23457775544311 2455667666665 467999999999999888888
Q ss_pred hHHHHHHHHHHcccCCcE-----EEEEee-ccccc---chHHHHHHHHHHcCCeEEEEEEee
Q 047630 316 LLHFLMFDIYRVLRPGGL-----FWLDHF-FCVGA---QLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~-----lii~~~-~~~~~---~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
..-++++.+++.|+|+|. |++.-. .|... -..+.|.++++..||..++.+...
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 888999999999999999 766643 22211 115669999999999999887443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.4e-06 Score=76.68 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=68.8
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcC---CCCCCcccEEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRL---PFFDNTLDIVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~L---pf~d~sFDlV~s~~~l 308 (392)
.++||||||.|.+...+|+.+++.-.++|++..+... .+.+.++ +.+++.|+..+ -+++++.|-|...+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 3569999999999999999887665555666444443 2333342 56677775543 2356699999987643
Q ss_pred cccCCch------hHHHHHHHHHHcccCCcEEEEEe
Q 047630 309 SNWIPTT------LLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 309 ~~~~~~~------~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.|.... --..+++.+.++|||||.|.+.+
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 333211 13468999999999999996664
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=76.21 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=62.7
Q ss_pred cEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc----------CCccEEEeccCc-CCCCCCcccEEEE
Q 047630 238 RIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQR-LPFFDNTLDIVHS 304 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~-Lpf~d~sFDlV~s 304 (392)
+.||+||||+|..+..+.+.. ..++++++|. ...+.+.+. ..+.++.+|... +...+++||+|++
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~--~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE--KVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH--HHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 456999999999998888754 4677755543 333322221 124556666433 2223578999998
Q ss_pred cccccccCCchh--HHHHHHHHHHcccCCcEEEEE
Q 047630 305 MHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 305 ~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~ 337 (392)
.... ...+... ..++++.+.+.|+|||++++.
T Consensus 152 D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 6542 2222222 357889999999999999876
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.6e-05 Score=76.59 Aligned_cols=116 Identities=9% Similarity=-0.011 Sum_probs=74.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcCCC-CCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRLPF-FDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~Lpf-~d~sFDlV~s~~~l~~~ 311 (392)
+|||+|||+|.++..++.++..++++|+|. ...+ .+...+ .+.++.+|+..+.. ..+.||+|+..-.....
T Consensus 236 ~vLDL~cG~G~~~l~la~~~~~v~~vE~~~--~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGPDTQLTGIEIES--EAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred EEEEccCCccHHHHHHhhcCCeEEEEECCH--HHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 459999999999999999888899966554 3333 222333 26788888765421 22469999987543221
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
.+.++..+. .++|+++++++.- ...+...+..+ .||+..+.....
T Consensus 314 -----~~~~l~~l~-~~~p~~ivyvsc~---p~TlaRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 314 -----GKELCDYLS-QMAPKFILYSSCN---AQTMAKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred -----cHHHHHHHH-hcCCCeEEEEEeC---HHHHHHHHHHh---cCceEEEEEEec
Confidence 123455554 4799999988852 23343445444 689877666543
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.2e-05 Score=79.62 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhC---CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCc
Q 047630 221 LDFSIDEVLATK---KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~---~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~ 291 (392)
.+.+++.+.... ++.. |||+|||+|.++..+++....|+++|++ ..+.+.+. ..+ .+.++.+|+.+
T Consensus 277 ~~~l~~~~~~~l~~~~~~~---vLDl~cG~G~~sl~la~~~~~V~~vE~~--~~av~~a~~n~~~~~~~nv~~~~~d~~~ 351 (431)
T TIGR00479 277 NEKLVDRALEALELQGEEL---VVDAYCGVGTFTLPLAKQAKSVVGIEVV--PESVEKAQQNAELNGIANVEFLAGTLET 351 (431)
T ss_pred HHHHHHHHHHHhccCCCCE---EEEcCCCcCHHHHHHHHhCCEEEEEEcC--HHHHHHHHHHHHHhCCCceEEEeCCHHH
Confidence 444555554432 3334 4999999999999999988889885544 34443222 223 36788888754
Q ss_pred C----CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 292 L----PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 292 L----pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+ ++.+++||+|+..-.-... ...+++.+.+ ++|+++++++. ....+...+. .+.+.||+.......
T Consensus 352 ~l~~~~~~~~~~D~vi~dPPr~G~-----~~~~l~~l~~-l~~~~ivyvsc---~p~tlard~~-~l~~~gy~~~~~~~~ 421 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLLLDPPRKGC-----AAEVLRTIIE-LKPERIVYVSC---NPATLARDLE-FLCKEGYGITWVQPV 421 (431)
T ss_pred HHHHHHhcCCCCCEEEECcCCCCC-----CHHHHHHHHh-cCCCEEEEEcC---CHHHHHHHHH-HHHHCCeeEEEEEEe
Confidence 2 3445679999975432111 1345666554 89999887763 2223333233 456678887665544
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.4e-05 Score=72.46 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=60.5
Q ss_pred EEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCc-CCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQR-LPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~-Lpf~d~sFDlV~s~~~l~~ 310 (392)
+|||+|||+|.++..++.+ ...|+++++|. ...+ .+...+ .+.++.+|+.. ++...+.||+|++.-.+..
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~--~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYAAGATLLEMDR--AVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC
Confidence 3499999999999865554 45788855443 3333 222223 25677787654 2223457999999876432
Q ss_pred cCCchhHHHHHHHHHH--cccCCcEEEEEeec
Q 047630 311 WIPTTLLHFLMFDIYR--VLRPGGLFWLDHFF 340 (392)
Q Consensus 311 ~~~~~~l~~~L~el~R--vLKPGG~lii~~~~ 340 (392)
...+.++..+.. .|+|+|++++.+..
T Consensus 134 ----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 134 ----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 222345555544 47999999988654
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=77.47 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=53.1
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
++.++..+ ||||||+|.++..+++++..++++++|. ...+.+.++ +.+.++.+|+..++++ .||.|+++
T Consensus 26 ~~~~~~~V---LEIG~G~G~lt~~L~~~~~~v~~vEid~--~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~N 98 (258)
T PRK14896 26 EDTDGDPV---LEIGPGKGALTDELAKRAKKVYAIELDP--RLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSN 98 (258)
T ss_pred CCCCcCeE---EEEeCccCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEc
Confidence 34444444 9999999999999999988898855553 444433222 3478899999888765 48999998
Q ss_pred cccc
Q 047630 306 HVLS 309 (392)
Q Consensus 306 ~~l~ 309 (392)
..++
T Consensus 99 lPy~ 102 (258)
T PRK14896 99 LPYQ 102 (258)
T ss_pred CCcc
Confidence 7753
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.2e-05 Score=74.32 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=73.6
Q ss_pred ccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh----------cCCccEEEeccCcC--CCCCCcccEE
Q 047630 237 IRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQRL--PFFDNTLDIV 302 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~L--pf~d~sFDlV 302 (392)
.+.||+||||.|..+..+++.. ..++.+++|. ...+.+.+ ...++++.+|+... ..++++||+|
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4556999999999999999853 3566655443 33332221 11367888885432 1235789999
Q ss_pred EEcccccccCCch--hHHHHHHHHHHcccCCcEEEEEee--cccccchHHHHHHHHHHcCCeEEEE
Q 047630 303 HSMHVLSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDHF--FCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 303 ~s~~~l~~~~~~~--~l~~~L~el~RvLKPGG~lii~~~--~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
++...- ++.+.. .-+.+++.+.++|+|||++++..- +... +....+.+.+.+.....+.+
T Consensus 170 i~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~-~~~~~i~~tl~~~F~~~v~~ 233 (308)
T PLN02366 170 IVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHM-DLIEDLIAICRETFKGSVNY 233 (308)
T ss_pred EEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccch-HHHHHHHHHHHHHCCCceeE
Confidence 985432 222222 124689999999999999976421 2122 22233445555553245544
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.1e-05 Score=74.23 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=44.8
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH--HHHhc-CC---ccEEE-eccCcC----CCCCCcccEEEE
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN--FIASR-GV---VPLYI-SISQRL----PFFDNTLDIVHS 304 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~--~aa~r-g~---i~~~~-~d~~~L----pf~d~sFDlV~s 304 (392)
..|||||||+|.+...++.+ +..++++|+|..+-..+ .+... ++ +.+.+ .+...+ ...++.||+|+|
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc 195 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC 195 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence 34699999999888777764 67888877665222221 23333 22 34433 232222 124678999999
Q ss_pred cccccc
Q 047630 305 MHVLSN 310 (392)
Q Consensus 305 ~~~l~~ 310 (392)
+-.++.
T Consensus 196 NPPf~~ 201 (321)
T PRK11727 196 NPPFHA 201 (321)
T ss_pred CCCCcC
Confidence 987764
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=70.66 Aligned_cols=101 Identities=20% Similarity=0.187 Sum_probs=59.9
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH-HHHhcC-----CccEEEeccCc-C--C-CCCCcccEEEEc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN-FIASRG-----VVPLYISISQR-L--P-FFDNTLDIVHSM 305 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~-~aa~rg-----~i~~~~~d~~~-L--p-f~d~sFDlV~s~ 305 (392)
+.|||+|||+|..+..++.. ...|+.+|.+...+... .+..++ .+.+..-+..+ . . ...+.||+|+++
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ilas 126 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILAS 126 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEE
T ss_pred ceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEe
Confidence 34599999999999999987 67899988765112222 233222 23333323211 1 1 234689999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.++.. ++..+.++.-+.+.|+++|.+++..-.+
T Consensus 127 Dv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 127 DVLYD---EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp S--S----GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cccch---HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99965 3777889999999999999977776444
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.7e-05 Score=74.41 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=78.0
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH-cC--CEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMME-RN--ITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLP 293 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~-~g--~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lp 293 (392)
+|-..+++.+|.+| ||.|.|+|.++..|+. -+ -.|+. .|+..+..+.|.++ | .+.+.+.|+..-.
T Consensus 31 ~I~~~l~i~pG~~V---lEaGtGSG~lt~~l~r~v~p~G~v~t--~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 31 YILMRLDIRPGSRV---LEAGTGSGSLTHALARAVGPTGHVYT--YEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHTT--TT-EE---EEE--TTSHHHHHHHHHHTTTSEEEE--EESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred HHHHHcCCCCCCEE---EEecCCcHHHHHHHHHHhCCCeEEEc--cccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 44455678888888 9999999999999997 23 35666 55655666544332 3 3678888875444
Q ss_pred CC---CCcccEEEEcccccccCCchhHHHHHHHHHHcc-cCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 294 FF---DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVL-RPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 294 f~---d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvL-KPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
|. ++.+|.|+.-. ...| .++..+.++| |+||++.+-. ..-++..+ ..+.+++.||..++.
T Consensus 106 ~~~~~~~~~DavfLDl-p~Pw-------~~i~~~~~~L~~~gG~i~~fs--P~ieQv~~-~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 106 FDEELESDFDAVFLDL-PDPW-------EAIPHAKRALKKPGGRICCFS--PCIEQVQK-TVEALREHGFTDIET 169 (247)
T ss_dssp -STT-TTSEEEEEEES-SSGG-------GGHHHHHHHE-EEEEEEEEEE--SSHHHHHH-HHHHHHHTTEEEEEE
T ss_pred ccccccCcccEEEEeC-CCHH-------HHHHHHHHHHhcCCceEEEEC--CCHHHHHH-HHHHHHHCCCeeeEE
Confidence 42 36799988532 2233 4789999999 9999986553 22233333 556778889987643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.7e-05 Score=63.00 Aligned_cols=96 Identities=28% Similarity=0.475 Sum_probs=63.2
Q ss_pred EEEEcCCcchHH--HHHHHcCCEEEEEecCCCchhHHHHHhc----CC--ccEEEeccCc--CCCCC-CcccEEEEcccc
Q 047630 240 GLDIGGGVATFA--VRMMERNITIVTTSMNLNGPFNNFIASR----GV--VPLYISISQR--LPFFD-NTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a--~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~--i~~~~~d~~~--Lpf~d-~sFDlV~s~~~l 308 (392)
++|+|||+|... ..+...+..+++ +|++.......... +. +.+..++... +++.+ ..||++ +....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG--VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE--EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 499999999965 333323346777 55533333322211 11 3567777665 78877 589999 66555
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.++.. ....+.++.++|+|+|.+++.....
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 55433 5679999999999999998887543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00018 Score=65.72 Aligned_cols=116 Identities=11% Similarity=0.061 Sum_probs=73.3
Q ss_pred EEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHH---HHhc--CCccEEEeccCcCCCCCCcccEEEEcccccccC
Q 047630 239 IGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNF---IASR--GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~---aa~r--g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
.|+|+|||||.++...+-.| ..|+++|+|. ...+. .+++ +.+.++++|+.++. ..||.|+.+-.+--+.
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~--~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~~~ 122 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGASRVLAVDIDP--EALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGSQR 122 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCcEEEEEecCH--HHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcccc
Confidence 35999999999999998888 4688866665 33332 2222 24789999988864 5789999997776555
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeE-EEEEEe
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNK-LKWVVG 367 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~-i~w~~~ 367 (392)
...+. .++..+.++-+ .++-.+-. ...+.++...+.+|+.. ..|+..
T Consensus 123 rhaDr-~Fl~~Ale~s~---vVYsiH~a----~~~~f~~~~~~~~G~~v~~~~~~~ 170 (198)
T COG2263 123 RHADR-PFLLKALEISD---VVYSIHKA----GSRDFVEKFAADLGGTVTHIERAR 170 (198)
T ss_pred ccCCH-HHHHHHHHhhh---eEEEeecc----ccHHHHHHHHHhcCCeEEEEEEEE
Confidence 55554 34444444431 22211111 13455778889999765 444433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=82.57 Aligned_cols=124 Identities=14% Similarity=0.114 Sum_probs=78.8
Q ss_pred cccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCcC--CCCCCcccEEEEccc
Q 047630 236 TIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQRL--PFFDNTLDIVHSMHV 307 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~L--pf~d~sFDlV~s~~~ 307 (392)
.-.++||||||.|.++..+|+.+++...+++++....... +.+.++ +.++..++..+ -++++++|.|+..+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 3456799999999999999997765444445554343332 223342 44555554322 257899999998765
Q ss_pred ccccCCch------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC-CeEEE
Q 047630 308 LSNWIPTT------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG-FNKLK 363 (392)
Q Consensus 308 l~~~~~~~------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG-f~~i~ 363 (392)
= .|.... --..++..++++|||||.+.+.. +..+......+.+++.+ |+.+.
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T---D~~~y~~~~~~~~~~~~~f~~~~ 485 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS---DIENYFYEAIELIQQNGNFEIIN 485 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc---CCHHHHHHHHHHHHhCCCeEecc
Confidence 4 332211 12468999999999999997653 33444444556666655 66553
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.8e-05 Score=72.50 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=59.8
Q ss_pred cccEEEEcccccccC-CchhHHHHHHHHHHcccCCcEEEEEeeccc-----ccc-------hHHHHHHHHHHcCCeEEEE
Q 047630 298 TLDIVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-----GAQ-------LEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 298 sFDlV~s~~~l~~~~-~~~~l~~~L~el~RvLKPGG~lii~~~~~~-----~~~-------l~~~l~~ll~~aGf~~i~w 364 (392)
.||+|++.+++.... +.+....+++++.+.|||||.|++...... .+. ..+.+++.++++||.++.+
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 599999999997643 456677899999999999999988864221 111 1677999999999999998
Q ss_pred EEeeccCCCCcccceeeEEEEEc
Q 047630 365 VVGRKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 365 ~~~~k~d~~~~~~e~ylsai~~K 387 (392)
+. ...-.+...+++ ++.||
T Consensus 238 ~~---~~~~~d~~~~~f-~~a~K 256 (256)
T PF01234_consen 238 EK---QSKVSDYEGMFF-LVARK 256 (256)
T ss_dssp EG----TTTB---EEEE-EEEEE
T ss_pred cc---ccCcCCCCcEEE-EEEeC
Confidence 82 111224444544 66666
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=77.04 Aligned_cols=73 Identities=11% Similarity=0.190 Sum_probs=52.7
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc---CCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR---GVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r---g~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
+.++..| ||||||+|.++..+++++..++++|+| ..+.+.+.++ ..+.++++|+..+++++-.+|.|+++..
T Consensus 40 ~~~~~~V---LEiG~G~G~lt~~L~~~~~~v~avE~d--~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 40 PQPGDNV---LEIGPGLGALTEPLLERAAKVTAVEID--RDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CCCcCeE---EEeCCCccHHHHHHHHhCCcEEEEECC--HHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 3444444 999999999999999988889886655 3454444332 3478899999988875433588888765
Q ss_pred c
Q 047630 308 L 308 (392)
Q Consensus 308 l 308 (392)
+
T Consensus 115 Y 115 (272)
T PRK00274 115 Y 115 (272)
T ss_pred c
Confidence 4
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00024 Score=64.35 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=77.7
Q ss_pred CcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHH---HHHhcC--CccEEEeccCcCCCCCCcccEEEEcc
Q 047630 235 GTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNN---FIASRG--VVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~---~aa~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
....++||||||+|..+..|++. + ....++|+++ ...+ ..++.+ .+..++.|...- ...++.|+++.+.
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp--~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINP--EALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNP 118 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECC
Confidence 34667899999999999999983 3 4455555444 3332 233333 345666664331 2238899999875
Q ss_pred cccccCC------------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 307 VLSNWIP------------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 307 ~l~~~~~------------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
.+..-.+ ++-..+++..+..+|.|.|.|++..... +.++++.++++.-||..-
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~---N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA---NKPKEILKILEKKGYGVR 189 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh---cCHHHHHHHHhhccccee
Confidence 5432111 1124567888889999999998886543 234456678999888653
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=69.20 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=65.3
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHH-HHhcCCc-cEEEeccCcC-----CCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNF-IASRGVV-PLYISISQRL-----PFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~-aa~rg~i-~~~~~d~~~L-----pf~d~sFDlV~s~~~l~~ 310 (392)
++||+|||+|.|+..+++.|+ .|++ +|++..+... ..+...+ .+...++..+ +..-..+|+++++..+
T Consensus 78 ~vlDiG~gtG~~t~~l~~~ga~~v~a--vD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~-- 153 (228)
T TIGR00478 78 IVLDVGSSTGGFTDCALQKGAKEVYG--VDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS-- 153 (228)
T ss_pred EEEEcccCCCHHHHHHHHcCCCEEEE--EeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh--
Confidence 459999999999999999875 6888 5553434443 3222221 1222333322 2111356666655433
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEe-e-cccc------------cc----hHHHHHHHHHHcCCeEEEEEEe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDH-F-FCVG------------AQ----LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~-~-~~~~------------~~----l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
++..+.+.|+| |.+++-- . +... .. ..+.+...+.+.||+.+.+...
T Consensus 154 ---------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 154 ---------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred ---------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence 57889999999 7664332 1 1100 00 0233445667778888776643
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.5e-05 Score=72.58 Aligned_cols=109 Identities=9% Similarity=0.089 Sum_probs=71.8
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcC---CccEEEeccCc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQR 291 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~ 291 (392)
..++..+..+.+..++ ||||+|+|+.+..++.. +-.+++++.| ....+ ...+.| .+.++.+++.+
T Consensus 107 g~lL~~L~~~~~ak~V---LEIGT~tGySal~lA~al~~~G~V~TiE~d--~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 107 AQLLAMLVQILGAERC---IEVGVYTGYSSLAVALVLPESGCLVACERD--SNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHHHhcCCCeE---EEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 3345555555554555 99999999999999872 3356774444 33333 223334 36778887543
Q ss_pred -CCC-----CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 292 -LPF-----FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 292 -Lpf-----~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
|+- .+++||+|+.-.. ......++..+.+.|+|||.+++++...
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 221 2468999986432 3445678899999999999999998643
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.6e-05 Score=79.67 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=64.4
Q ss_pred cEEEEEcCCcchHHHHHHHcC------CEEEEEecCCCchhHH-H-HHhcC---CccEEEeccCcCCCCCCcccEEEEcc
Q 047630 238 RIGLDIGGGVATFAVRMMERN------ITIVTTSMNLNGPFNN-F-IASRG---VVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g------~~vvg~~iD~~a~~~~-~-aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
.+|||||||+|-+....++.+ .+|+++.-+..+.... . +.+++ .|+++.+|++++..+. .+|+|++=.
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSEl 266 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSEL 266 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE--
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEec
Confidence 467999999999876665543 6888866544222221 1 23333 5899999999987654 899999864
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEE
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~li 335 (392)
.- .+.+.+...+.|....|.|||||+++
T Consensus 267 LG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 43 34566777788999999999999984
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.2e-05 Score=72.55 Aligned_cols=67 Identities=10% Similarity=0.175 Sum_probs=48.5
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCccc---EEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLD---IVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFD---lV~s~~~l 308 (392)
..|||||||+|.++..+++++..++++++| ......+.++ ..+.++.+|+..++++ .|| +|+++..+
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d--~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRAKKVTAIEID--PRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLPY 104 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCcEEEEECC--HHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCCh
Confidence 345999999999999999988888885554 3444433322 3467888999888765 466 77776654
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.4e-05 Score=70.75 Aligned_cols=133 Identities=21% Similarity=0.252 Sum_probs=71.1
Q ss_pred cccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhcCCccEEEec------cCcC----CCCCCcccEE
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASRGVVPLYISI------SQRL----PFFDNTLDIV 302 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d------~~~L----pf~d~sFDlV 302 (392)
...+|||+||++|.|+..+.+++ ..|+|+|+....+. ++ +..+.+| ...+ +-..+.||+|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~------~~-~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL------QN-VSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------TT-EEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc------cc-eeeeecccchhhHHHhhhhhccccccCccee
Confidence 34566999999999999999987 67777554432111 11 1222222 1111 1122689999
Q ss_pred EEcccccccC--------CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCC
Q 047630 303 HSMHVLSNWI--------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGP 374 (392)
Q Consensus 303 ~s~~~l~~~~--------~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~ 374 (392)
+|-.+...-. ........+.-+.+.|||||.+++..+..... . .+...++. .|+.+.+..-.... .
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~--~-~~~~~l~~-~F~~v~~~Kp~~sr--~ 169 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI--E-ELIYLLKR-CFSKVKIVKPPSSR--S 169 (181)
T ss_dssp EE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS--H-HHHHHHHH-HHHHEEEEE-TTSB--T
T ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH--H-HHHHHHHh-CCeEEEEEECcCCC--C
Confidence 9977432111 11222334455567899999999887664332 2 34444444 36667766443222 3
Q ss_pred cccceee
Q 047630 375 ELREMYL 381 (392)
Q Consensus 375 ~~~e~yl 381 (392)
...|.|+
T Consensus 170 ~s~E~Yl 176 (181)
T PF01728_consen 170 ESSEEYL 176 (181)
T ss_dssp TCBEEEE
T ss_pred CccEEEE
Confidence 4577887
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.1e-05 Score=79.24 Aligned_cols=101 Identities=26% Similarity=0.382 Sum_probs=74.7
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHH----HHHh---cCCccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNN----FIAS---RGVVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~----~aa~---rg~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
..++..+ +|+|||.|....+.+. ++..++| ++.++.... .... .....+..++....||++++||.+
T Consensus 108 ~~~~~~~---~~~~~g~~~~~~~i~~f~~~~~~G--l~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKV---LDVGTGVGGPSRYIAVFKKAGVVG--LDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred Ccccccc---cccCcCcCchhHHHHHhccCCccC--CCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcE
Confidence 3444555 9999999999999888 4567777 444222221 1111 112345778899999999999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.+..+..|. .....+++|++|+++|||+++..++
T Consensus 183 ~~ld~~~~~---~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 183 RFLEVVCHA---PDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred EEEeecccC---CcHHHHHHHHhcccCCCceEEeHHH
Confidence 999999997 4455799999999999999977764
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.5e-05 Score=71.02 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=71.2
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHH----HhcC---CccEEEeccCcC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFI----ASRG---VVPLYISISQRL 292 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~a----a~rg---~i~~~~~d~~~L 292 (392)
.++..+..+....+| |+||+++|+-+..|++. +.+++++++| ....+.+ .+.| .++++.+++...
T Consensus 35 ~lL~~l~~~~~~k~v---LEIGt~~GySal~la~~l~~~g~i~tiE~~--~~~~~~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRV---LEIGTFTGYSALWLAEALPEDGKITTIEID--PERAEIARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHHT-SEE---EEESTTTSHHHHHHHHTSTTTSEEEEEESS--HHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred HHHHHHHHhcCCceE---EEeccccccHHHHHHHhhcccceEEEecCc--HHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence 345555554443445 99999999999999973 5678885544 3443322 2223 378888875432
Q ss_pred -C-----CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 293 -P-----FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 293 -p-----f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+ ...++||+|+.-.. .......+..+.+.|+|||.+++++...
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred HHHHHhccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccc
Confidence 2 12468999986543 2344568888999999999999998543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.4e-05 Score=69.74 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hcCC---ccEEE-ecc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SRGV---VPLYI-SIS 289 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~rg~---i~~~~-~d~ 289 (392)
.-.++..++.+.+.+++ |+||.+.|+-+..|+.. +-++++ +|.+....+.+. +-|. +..+. +|.
T Consensus 47 ~g~~L~~L~~~~~~k~i---LEiGT~~GySal~mA~~l~~~g~l~t--iE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 47 TGALLRLLARLSGPKRI---LEIGTAIGYSALWMALALPDDGRLTT--IERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred HHHHHHHHHHhcCCceE---EEeecccCHHHHHHHhhCCCCCeEEE--EeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 34455666666655555 99999999999999982 335666 556445554333 3342 45666 353
Q ss_pred Cc-CC-CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 290 QR-LP-FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 290 ~~-Lp-f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
.+ +. ...++||+|+.-.. +..-..++..+.+.|||||++++++....
T Consensus 122 l~~l~~~~~~~fDliFIDad------K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 122 LDVLSRLLDGSFDLVFIDAD------KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHHhccCCCccEEEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 22 22 45789999986432 23345789999999999999999987554
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00027 Score=73.64 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=81.5
Q ss_pred HHHHHHHHH--hhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcCC--ccEEEecc
Q 047630 221 LDFSIDEVL--ATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRGV--VPLYISIS 289 (392)
Q Consensus 221 ~~~lI~~ll--~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~ 289 (392)
...+...++ ...++.+| ||+++|.|.=+.++++. .-.+++ .|++..... .+.+-|. +.+...|.
T Consensus 99 sS~l~~~~L~~~~~pg~~V---LD~CAAPGgKTt~la~~l~~~g~lvA--~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~ 173 (470)
T PRK11933 99 SSMLPVAALFADDNAPQRV---LDMAAAPGSKTTQIAALMNNQGAIVA--NEYSASRVKVLHANISRCGVSNVALTHFDG 173 (470)
T ss_pred HHHHHHHHhccCCCCCCEE---EEeCCCccHHHHHHHHHcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEeCch
Confidence 344445555 44566655 99999999988888873 235677 445344443 3333353 34455666
Q ss_pred CcCC-CCCCcccEEE----Ecc--cccc-------cCCc------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 290 QRLP-FFDNTLDIVH----SMH--VLSN-------WIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 290 ~~Lp-f~d~sFDlV~----s~~--~l~~-------~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
..+. ...+.||.|+ |+. ++.. |... ....++|..+.+.|||||+++.+...-..++.++.
T Consensus 174 ~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~v 253 (470)
T PRK11933 174 RVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAV 253 (470)
T ss_pred hhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHH
Confidence 5542 3346799999 442 1211 1000 01257899999999999999888765555555566
Q ss_pred HHHHHHHcC
Q 047630 350 YVPLIESVG 358 (392)
Q Consensus 350 l~~ll~~aG 358 (392)
+..++++.+
T Consensus 254 V~~~L~~~~ 262 (470)
T PRK11933 254 CLWLKETYP 262 (470)
T ss_pred HHHHHHHCC
Confidence 777777753
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.8e-05 Score=68.59 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=66.3
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH----cCCEEEEEecCCCchhHH----------------HHHhcCCccEEEeccC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME----RNITIVTTSMNLNGPFNN----------------FIASRGVVPLYISISQ 290 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~----~g~~vvg~~iD~~a~~~~----------------~aa~rg~i~~~~~d~~ 290 (392)
+.++-+. ||+|.|+|+++..++. .|..++| |+.-++..+ ...+++.+.++++|..
T Consensus 80 L~pG~s~---LdvGsGSGYLt~~~~~mvg~~g~~~~G--IEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 80 LQPGASF---LDVGSGSGYLTACFARMVGATGGNVHG--IEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR 154 (237)
T ss_pred hccCcce---eecCCCccHHHHHHHHHhcCCCccccc--hhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence 5778888 9999999998888775 3444455 554222222 1123344678889988
Q ss_pred cCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 291 RLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 291 ~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..--....||.||+...-. ++.+++...|++||.+++-.
T Consensus 155 ~g~~e~a~YDaIhvGAaa~---------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 155 KGYAEQAPYDAIHVGAAAS---------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ccCCccCCcceEEEccCcc---------ccHHHHHHhhccCCeEEEee
Confidence 8776788999999985432 24578888999999998774
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.2e-05 Score=67.39 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=74.9
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHH--cCCE---------EEEEecCCCchhHH----HHHhcC---CccEEEecc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMME--RNIT---------IVTTSMNLNGPFNN----FIASRG---VVPLYISIS 289 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~--~g~~---------vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~ 289 (392)
+....++..+ ||--||+|.+....+. .+.. ++|.|+|. .... ++...+ .+.+...|+
T Consensus 23 la~~~~~~~v---lDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~--~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 23 LAGWRPGDVV---LDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDP--KAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HTT--TTS-E---EETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSH--HHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HhCCCCCCEE---eecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCH--HHHHHHHHHHHhcccCCceEEEecch
Confidence 3334444444 9999999999877665 3333 66766554 3332 222223 367888899
Q ss_pred CcCCCCCCcccEEEEcccccccCC-c----hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 290 QRLPFFDNTLDIVHSMHVLSNWIP-T----TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 290 ~~Lpf~d~sFDlV~s~~~l~~~~~-~----~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.++++.++++|.|+++..+-.-.. . .-...+++++.|+|++...+++.... . +.+.+...+++..+-
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~----~----~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR----E----LEKALGLKGWRKRKL 169 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC----C----HHHHHTSTTSEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH----H----HHHHhcchhhceEEE
Confidence 999988899999999865532111 1 22345788999999994444444322 1 555677777777665
Q ss_pred EEe
Q 047630 365 VVG 367 (392)
Q Consensus 365 ~~~ 367 (392)
..+
T Consensus 170 ~~~ 172 (179)
T PF01170_consen 170 YNG 172 (179)
T ss_dssp EET
T ss_pred EEe
Confidence 533
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00031 Score=61.01 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=63.8
Q ss_pred EEEEEcCCcch-HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC-CCcccEEEEcccccccCCchh
Q 047630 239 IGLDIGGGVAT-FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF-DNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGtG~-~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~~~~~ 316 (392)
.+||||||+|. ++..|++.|.+|+++|++. ...+.+.+++ +.++++|..+-.+. -..+|+|.+...- .+
T Consensus 19 kileIG~GfG~~vA~~L~~~G~~ViaIDi~~--~aV~~a~~~~-~~~v~dDlf~p~~~~y~~a~liysirpp------~e 89 (134)
T PRK04148 19 KIVELGIGFYFKVAKKLKESGFDVIVIDINE--KAVEKAKKLG-LNAFVDDLFNPNLEIYKNAKLIYSIRPP------RD 89 (134)
T ss_pred EEEEEEecCCHHHHHHHHHCCCEEEEEECCH--HHHHHHHHhC-CeEEECcCCCCCHHHHhcCCEEEEeCCC------HH
Confidence 45999999996 9999999999999966554 4455566665 58889987764432 2458999987643 44
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecc
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+...+.++.+.+ |.-++|..+..
T Consensus 90 l~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 90 LQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred HHHHHHHHHHHc--CCCEEEEcCCC
Confidence 444556666544 45677776544
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00061 Score=65.49 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=60.7
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhc---CCccEEEe----c-cCcCCCCCCcccEEEE
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASR---GVVPLYIS----I-SQRLPFFDNTLDIVHS 304 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~r---g~i~~~~~----d-~~~Lpf~d~sFDlV~s 304 (392)
.+||+|||+|.++..++.. ...+++ +|.+...... +.+. |.+.++.. + ....+..++.+|++++
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~A--iD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTA--IDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEE--EeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 4599999999999999883 455666 4552222222 2221 33444432 2 2334556799999999
Q ss_pred cccccccCC-----------------------chhHHHHHHHHHHcccCCcEEEEEee
Q 047630 305 MHVLSNWIP-----------------------TTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 305 ~~~l~~~~~-----------------------~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+-....-.+ .+.+..++.-+.|.|+|||.+++.-.
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 855432111 01133456667899999999998865
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00076 Score=62.56 Aligned_cols=133 Identities=20% Similarity=0.180 Sum_probs=81.7
Q ss_pred EEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCCCcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d~sFDlV~s~~~l 308 (392)
|+|+|+-.|.++..++++ +..|+++|++...+. .| +.++++|+..-+ +....+|+|++-.+-
T Consensus 49 ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~------~~-V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 49 VVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI------PG-VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAP 121 (205)
T ss_pred EEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC------CC-ceEEeeeccCccHHHHHHHHcCCCCcceEEecCCC
Confidence 499999999999988884 234888666542211 12 677788765432 234457999976444
Q ss_pred --------cccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCccccee
Q 047630 309 --------SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMY 380 (392)
Q Consensus 309 --------~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~y 380 (392)
+|...-...+.++.-+.++|+|||.|++-.|.....+. +...+++. |+.++.......- ....|.|
T Consensus 122 ~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~---~l~~~~~~-F~~v~~~KP~aSR--~~S~E~y 195 (205)
T COG0293 122 NTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFED---LLKALRRL-FRKVKIFKPKASR--KRSREIY 195 (205)
T ss_pred CcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHH---HHHHHHHh-hceeEEecCcccc--CCCceEE
Confidence 22211122234556667899999999999887654332 44455543 8888776443322 1334888
Q ss_pred eEEEE
Q 047630 381 LSALL 385 (392)
Q Consensus 381 lsai~ 385 (392)
+.+..
T Consensus 196 ~v~~~ 200 (205)
T COG0293 196 LVAKG 200 (205)
T ss_pred EEEec
Confidence 74443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=8e-05 Score=73.08 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=51.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh-------cCCccEEEeccCcCCCCCCcccEEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS-------RGVVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~-------rg~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
+.++..+ ||||||+|.++..+++.+..++++++|. .+.+.+.+ .+.++++.+|+...++ ..||.|+
T Consensus 34 ~~~~~~V---LEIG~G~G~LT~~Ll~~~~~V~avEiD~--~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~Vv 106 (294)
T PTZ00338 34 IKPTDTV---LEIGPGTGNLTEKLLQLAKKVIAIEIDP--RMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCV 106 (294)
T ss_pred CCCcCEE---EEecCchHHHHHHHHHhCCcEEEEECCH--HHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEE
Confidence 4444445 9999999999999999888899966554 44443222 1247888999877665 3689999
Q ss_pred Ecccc
Q 047630 304 SMHVL 308 (392)
Q Consensus 304 s~~~l 308 (392)
++..+
T Consensus 107 aNlPY 111 (294)
T PTZ00338 107 ANVPY 111 (294)
T ss_pred ecCCc
Confidence 87655
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00049 Score=63.16 Aligned_cols=95 Identities=13% Similarity=-0.012 Sum_probs=58.2
Q ss_pred EEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC---CccEEEeccCcC-C-C-CCC-cccEEEEccc
Q 047630 240 GLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRL-P-F-FDN-TLDIVHSMHV 307 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~L-p-f-~d~-sFDlV~s~~~ 307 (392)
|||++||+|.++..++.+|. .|++++.|. .... .+...+ .+.++.+|+.+. . + ... .||+|+.--.
T Consensus 53 vLDLfaGsG~lglea~srga~~v~~vE~~~--~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP 130 (189)
T TIGR00095 53 LLDVFAGSGLLGEEALSRGAKVAFLEEDDR--KANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP 130 (189)
T ss_pred EEEecCCCcHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC
Confidence 49999999999999999987 688855544 3222 222223 246777776432 2 1 122 3677776544
Q ss_pred ccccCCchhHHHHHHHHH--HcccCCcEEEEEeec
Q 047630 308 LSNWIPTTLLHFLMFDIY--RVLRPGGLFWLDHFF 340 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~--RvLKPGG~lii~~~~ 340 (392)
+.. .....++..+. ..|+++|.+++.+..
T Consensus 131 y~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 131 FFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 422 22233444443 478999988887643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00036 Score=66.86 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=70.2
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQR 291 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~ 291 (392)
..++..++...+..++ |+||+++|+-+..|++. +.++++++.| ....+. ..+.| .+.++.+++.+
T Consensus 68 g~lL~~l~~~~~ak~i---LEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 68 GQFLNMLLKLINAKNT---MEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHhCCCEE---EEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 3445555555444445 99999999999999872 4467775544 333332 22334 37788887543
Q ss_pred C-CC------CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 292 L-PF------FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 292 L-pf------~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
. +- ..++||+|+.-.- +......+..+.+.|+|||++++++..
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHHHHHhccccCCcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 2 21 1368999986533 233456788889999999999999754
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00078 Score=66.33 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=71.5
Q ss_pred ccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 237 IRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
-++|||+|||+|.++...++.|. +|+++. . +.+.+.+. .+. .|.++.+-++++.+| +..|+|++--.-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvE--A-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVE--A-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEe--h-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 35689999999999998888775 577744 2 23333222 222 266777888888775 468999986433
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEe--ecccccchHHHHHHHHHHcCC
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDH--FFCVGAQLEDVYVPLIESVGF 359 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~--~~~~~~~l~~~l~~ll~~aGf 359 (392)
..+..+..+ +..-...|.|||.|..+-.. ..-..-..+..+.+++.++.|
T Consensus 254 ~mL~NERML-EsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnF 305 (517)
T KOG1500|consen 254 YMLVNERML-ESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANF 305 (517)
T ss_pred hhhhhHHHH-HHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhh
Confidence 232233333 34445669999999885332 110001113446777777655
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=64.38 Aligned_cols=125 Identities=15% Similarity=0.089 Sum_probs=87.1
Q ss_pred EEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhH--HHHHhcC---CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 240 GLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFN--NFIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~--~~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
|||+=+|.|.|+..++..+.. |+++|+|+.+-.. +++..++ .+..+++|+..++..-+.||-|++...-..
T Consensus 192 V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~a--- 268 (341)
T COG2520 192 VLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPKSA--- 268 (341)
T ss_pred EEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCCcc---
Confidence 499999999999999997765 8886666533222 1333343 267889999888766588999998765421
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeecccccc---hHHHHHHHHHHcC--CeEEEEEEeeccC
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---LEDVYVPLIESVG--FNKLKWVVGRKLD 371 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---l~~~l~~ll~~aG--f~~i~w~~~~k~d 371 (392)
..++..+.+.+|+||++-+.++...... ....+.....+.| .+...|..+.+.-
T Consensus 269 ----~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~Vksys 327 (341)
T COG2520 269 ----HEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYS 327 (341)
T ss_pred ----hhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccC
Confidence 2477888899999999977766554432 3455666666666 4556666665543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0019 Score=57.95 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=73.2
Q ss_pred EEEEcCCcchHHHHHHHcCC---EEEEEecCCCchhHHHHHhcC-CccEEEeccCcCC-----CCCCcccEEEEcccccc
Q 047630 240 GLDIGGGVATFAVRMMERNI---TIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLP-----FFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~---~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lp-----f~d~sFDlV~s~~~l~~ 310 (392)
||++|.|||-++.++.++|+ .+++ ++.+.++.....++- -+.++.+|+.++. +.+..||.|+|...+-.
T Consensus 52 VlElGPGTGV~TkaIL~~gv~~~~L~~--iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~ 129 (194)
T COG3963 52 VLELGPGTGVITKAILSRGVRPESLTA--IEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLN 129 (194)
T ss_pred eEEEcCCccHhHHHHHhcCCCccceEE--EEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccccc
Confidence 49999999999999999764 4555 444446655444332 3578888877664 46778999999987766
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+ +....-++|+++...|++||.++-..+..
T Consensus 130 ~-P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 130 F-PMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred C-cHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 4 33444579999999999999998777653
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0025 Score=64.37 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcC-C
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRL-P 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~L-p 293 (392)
.+.+++.+........ ..|||++||+|.++..+++....|++++++. ...+. +...+ .+.++.+|+.++ +
T Consensus 192 ~e~l~~~v~~~~~~~~-~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~--~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKGSK-GDLLELYCGNGNFTLALARNFRRVLATEISK--PSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhcCC-CeEEEEeccccHHHHHHHhhCCEEEEEECCH--HHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 5556666655432211 2359999999999999998777898855543 44332 22334 266888886552 1
Q ss_pred -CC--------------CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC
Q 047630 294 -FF--------------DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 294 -f~--------------d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG 358 (392)
+. ...||+|+..-.-.. ..+.+++.+.+ |+++++++.-. ..+...+..+. + |
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G-----~~~~~l~~l~~---~~~ivyvSC~p---~tlarDl~~L~-~-g 335 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG-----LDDETLKLVQA---YERILYISCNP---ETLCENLETLS-Q-T 335 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCCCC-----CcHHHHHHHHc---cCCEEEEEeCH---HHHHHHHHHHc-C-C
Confidence 10 225899987644321 11234455543 78888777432 34445455544 3 8
Q ss_pred CeEEEEEEee
Q 047630 359 FNKLKWVVGR 368 (392)
Q Consensus 359 f~~i~w~~~~ 368 (392)
|+..+.....
T Consensus 336 Y~l~~v~~~D 345 (362)
T PRK05031 336 HKVERFALFD 345 (362)
T ss_pred cEEEEEEEcc
Confidence 9887776554
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00025 Score=65.84 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=57.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhH--HHHHhcC---CccEEEeccCcCCCCCCcccEEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFN--NFIASRG---VVPLYISISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~--~~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s 304 (392)
.++..| ||+.||.|.|+..+++ ++..|+++|+++.+-.. +.+..++ .+..+.+|...+.- .+.||-|++
T Consensus 100 ~~~e~V---lD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim 175 (200)
T PF02475_consen 100 KPGEVV---LDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIM 175 (200)
T ss_dssp -TT-EE---EETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE
T ss_pred CcceEE---EEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEE
Confidence 344444 9999999999999999 67789996665422111 1333333 36678889888765 789999998
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEE
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
...-.. ..+|..+.+++|+||++
T Consensus 176 ~lp~~~-------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 176 NLPESS-------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TSSG-------GGGHHHHHHHEEEEEEE
T ss_pred CChHHH-------HHHHHHHHHHhcCCcEE
Confidence 754322 14788899999999986
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0021 Score=58.83 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=73.1
Q ss_pred EEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.++|||+|.|.-+..++= ...+++. +|.......+ +.+-+ .+.++.+.++. +.....||+|++-.+- .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~L--vEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~-~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTL--VESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA-P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEE--EESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS-S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEE--EeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc-C
Confidence 459999999987766665 4566777 5553444432 22334 26677777777 5567899999986553 2
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+..++.-+...|++||.+++..-....+++. +....++..|.+.....
T Consensus 127 ------l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~-~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 127 ------LDKLLELARPLLKPGGRLLAYKGPDAEEELE-EAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp ------HHHHHHHHGGGEEEEEEEEEEESS--HHHHH-THHHHHHCCCEEEEEEE
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEcCCChHHHHH-HHHhHHHHhCCEEeeec
Confidence 2358888899999999998775433333332 25555666665555443
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0009 Score=64.35 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=63.1
Q ss_pred cccceeccCCCCcHHHHHHHHHh---hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C
Q 047630 208 EKIRWTQKKGNGGLDFSIDEVLA---TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G 280 (392)
Q Consensus 208 e~~~w~~~~~~~~~~~lI~~ll~---l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g 280 (392)
-+|+|+.... .++.+.+ +.++..| ||||+|.|.++..|++++..|+++.+|. ...+...++ +
T Consensus 8 ~GQnFL~d~~------v~~kIv~~a~~~~~d~V---lEIGpG~GaLT~~Ll~~~~~v~aiEiD~--~l~~~L~~~~~~~~ 76 (259)
T COG0030 8 LGQNFLIDKN------VIDKIVEAANISPGDNV---LEIGPGLGALTEPLLERAARVTAIEIDR--RLAEVLKERFAPYD 76 (259)
T ss_pred cccccccCHH------HHHHHHHhcCCCCCCeE---EEECCCCCHHHHHHHhhcCeEEEEEeCH--HHHHHHHHhccccc
Confidence 3467766433 2444433 3343444 9999999999999999999999966664 444433333 3
Q ss_pred CccEEEeccCcCCCCCC-cccEEEEcccc
Q 047630 281 VVPLYISISQRLPFFDN-TLDIVHSMHVL 308 (392)
Q Consensus 281 ~i~~~~~d~~~Lpf~d~-sFDlV~s~~~l 308 (392)
.+.++.+|+-..++++- .++.|+++...
T Consensus 77 n~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 77 NLTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred ceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence 47889999999888654 68899988655
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00078 Score=68.53 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=59.7
Q ss_pred EEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 240 GLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
|||++||+|.++..++.. + ..|+++|+|. ...+ ++..++. +.+..+|+..+....+.||+|+..- +
T Consensus 61 vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~--~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~--- 134 (382)
T PRK04338 61 VLDALSASGIRGIRYALETGVEKVTLNDINP--DAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F--- 134 (382)
T ss_pred EEECCCcccHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C---
Confidence 499999999999999764 4 3788866554 3333 2223332 3467777665422146799999853 2
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+ ..++..+.+.+++||+++++.
T Consensus 135 Gs~---~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 GSP---APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCc---HHHHHHHHHHhcCCCEEEEEe
Confidence 111 247778778899999998883
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.02 Score=57.79 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc----CCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER----NITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~----g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~ 290 (392)
...+...++...++..| ||+.++.|.=+.++++. +..|+++| .+..... .+.+-|. +..+..|..
T Consensus 144 sS~l~a~~L~p~pge~V---lD~cAAPGGKTthla~~~~~~~~iV~A~D--~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~ 218 (355)
T COG0144 144 ASQLPALVLDPKPGERV---LDLCAAPGGKTTHLAELMENEGAIVVAVD--VSPKRLKRLRENLKRLGVRNVIVVNKDAR 218 (355)
T ss_pred HHHHHHHHcCCCCcCEE---EEECCCCCCHHHHHHHhcCCCCceEEEEc--CCHHHHHHHHHHHHHcCCCceEEEecccc
Confidence 45566667777777666 99999999977777773 45567744 4344443 3334453 345666665
Q ss_pred cCCC---CCCcccEEEEc------ccccc-----cC-Cch-------hHHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 291 RLPF---FDNTLDIVHSM------HVLSN-----WI-PTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 291 ~Lpf---~d~sFDlV~s~------~~l~~-----~~-~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
.++- ..+.||.|+.- .++.. |. ... -..++|..+.+.|||||.|+.++.--..++-++
T Consensus 219 ~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~ 298 (355)
T COG0144 219 RLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEE 298 (355)
T ss_pred cccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHH
Confidence 5532 22359999853 22211 10 011 134689999999999999999986655566666
Q ss_pred HHHHHHHHc-CCeEE
Q 047630 349 VYVPLIESV-GFNKL 362 (392)
Q Consensus 349 ~l~~ll~~a-Gf~~i 362 (392)
.+..++++. +|+.+
T Consensus 299 vV~~~L~~~~~~~~~ 313 (355)
T COG0144 299 VVERFLERHPDFELE 313 (355)
T ss_pred HHHHHHHhCCCceee
Confidence 677788775 44433
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00018 Score=66.51 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=84.0
Q ss_pred HHHHHHhhC---CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCccc
Q 047630 224 SIDEVLATK---KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 224 lI~~ll~l~---~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFD 300 (392)
...+++.+. .+....++||+|+|.|.++..|+..--+|+++. ++..+.....+++. .++ +..+- --.+-+||
T Consensus 97 QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATE--lS~tMr~rL~kk~y-nVl-~~~ew-~~t~~k~d 171 (288)
T KOG3987|consen 97 QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATE--LSWTMRDRLKKKNY-NVL-TEIEW-LQTDVKLD 171 (288)
T ss_pred HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHH--hhHHHHHHHhhcCC-cee-eehhh-hhcCceee
Confidence 344555443 123334569999999999999987655566533 32233334444442 221 11111 11345699
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccC-CcEEEEEee------cc---------c----------ccchHHHHHHHH
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRP-GGLFWLDHF------FC---------V----------GAQLEDVYVPLI 354 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKP-GG~lii~~~------~~---------~----------~~~l~~~l~~ll 354 (392)
+|.|...+....++- ++|++++.+|+| .|.+++.-. .. + .++-...+.+++
T Consensus 172 li~clNlLDRc~~p~---kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~l 248 (288)
T KOG3987|consen 172 LILCLNLLDRCFDPF---KLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELL 248 (288)
T ss_pred hHHHHHHHHhhcChH---HHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHH
Confidence 999998887643333 589999999999 888866532 11 0 011134467889
Q ss_pred HHcCCeEEEEEEee
Q 047630 355 ESVGFNKLKWVVGR 368 (392)
Q Consensus 355 ~~aGf~~i~w~~~~ 368 (392)
+.+||.+..|....
T Consensus 249 r~~g~~veawTrlP 262 (288)
T KOG3987|consen 249 RNCGYRVEAWTRLP 262 (288)
T ss_pred HhcCchhhhhhcCC
Confidence 99999999998655
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0096 Score=55.92 Aligned_cols=143 Identities=10% Similarity=0.129 Sum_probs=82.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-c--CCEEEEEecCCCchhHH----HHHhcCCccEEEeccCc---CCCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-R--NITIVTTSMNLNGPFNN----FIASRGVVPLYISISQR---LPFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~--g~~vvg~~iD~~a~~~~----~aa~rg~i~~~~~d~~~---Lpf~d~sFD 300 (392)
+.++.+| |-+|..+|....++++ - .-.|++ ++.+..... .+.+|..+--+.+|+.. ....-+.+|
T Consensus 71 ik~gskV---LYLGAasGTTVSHvSDIvg~~G~VYa--VEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 71 IKPGSKV---LYLGAASGTTVSHVSDIVGPDGVVYA--VEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp --TT-EE---EEETTTTSHHHHHHHHHHTTTSEEEE--EESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EE
T ss_pred CCCCCEE---EEecccCCCccchhhhccCCCCcEEE--EEecchhHHHHHHHhccCCceeeeeccCCChHHhhccccccc
Confidence 4566677 9999999999888888 2 335677 445332222 34445443334455432 112234789
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec------ccccchHHHHHHHHHHcCCeEEEEEEeeccCCCC
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF------CVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGP 374 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~------~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~ 374 (392)
+|++-- ..+++.+-++.++...||+||.+++.--. ...+...+.-.+.+++.||+.++-...+..+
T Consensus 146 vI~~DV-----aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~--- 217 (229)
T PF01269_consen 146 VIFQDV-----AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYE--- 217 (229)
T ss_dssp EEEEE------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTS---
T ss_pred EEEecC-----CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCC---
Confidence 998743 33456677899999999999999887422 1122223334455677789998877554443
Q ss_pred cccceeeEEEEEc
Q 047630 375 ELREMYLSALLEK 387 (392)
Q Consensus 375 ~~~e~ylsai~~K 387 (392)
.+...+.+.++|
T Consensus 218 -~dH~~vv~~y~~ 229 (229)
T PF01269_consen 218 -RDHAMVVGRYRK 229 (229)
T ss_dssp -TTEEEEEEEE--
T ss_pred -CCcEEEEEEecC
Confidence 445545556554
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.01 Score=60.42 Aligned_cols=125 Identities=10% Similarity=0.045 Sum_probs=80.2
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcCC----ccEEEeccCcC----CCCCC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRGV----VPLYISISQRL----PFFDN 297 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg~----i~~~~~d~~~L----pf~d~ 297 (392)
...+.++ ||+=|=||.++.+.+..|+ +|+.+|++- .... ++.-+|. +.++++|+..+ .-...
T Consensus 215 ~~~Gkrv---LNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~ 289 (393)
T COG1092 215 LAAGKRV---LNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGE 289 (393)
T ss_pred hccCCeE---EEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCC
Confidence 3345666 9999999999999999998 898855443 3322 3333443 56888885543 22345
Q ss_pred cccEEEEccc-ccc-----cCCchhHHHHHHHHHHcccCCcEEEEEeeccc--ccchHHHHHHHHHHcCCe
Q 047630 298 TLDIVHSMHV-LSN-----WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV--GAQLEDVYVPLIESVGFN 360 (392)
Q Consensus 298 sFDlV~s~~~-l~~-----~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~--~~~l~~~l~~ll~~aGf~ 360 (392)
+||+|+.--. +.. |.-..+...++..+.++|+|||.+++..-... .+...+.+.+.+...|..
T Consensus 290 ~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~ 360 (393)
T COG1092 290 KFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRR 360 (393)
T ss_pred cccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCc
Confidence 8999997522 111 11123456788999999999999988864332 233344455555665533
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=58.57 Aligned_cols=139 Identities=12% Similarity=0.153 Sum_probs=78.5
Q ss_pred EEEEcCCcchHHHHHHH----c--CCEEEEEecCCCchhHHHHHhc----C--CccE--EEeccCc----CCC--CCCcc
Q 047630 240 GLDIGGGVATFAVRMME----R--NITIVTTSMNLNGPFNNFIASR----G--VVPL--YISISQR----LPF--FDNTL 299 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~----~--g~~vvg~~iD~~a~~~~~aa~r----g--~i~~--~~~d~~~----Lpf--~d~sF 299 (392)
++|+|||.|.=+..|.+ . ....++ +|++.+..+.+.++ . .+.+ ++++..+ ++- .....
T Consensus 80 lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~p--lDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 80 LVELGSGNLRKVGILLEALERQKKSVDYYA--LDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred EEEECCCchHHHHHHHHHHHhcCCCceEEE--EECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 49999999985554443 3 344555 66655555533322 1 1222 4565433 321 12345
Q ss_pred cEEEEc-ccccccCCchhHHHHHHHHHH-cccCCcEEEEEeecccccch------------HHHHHHHH----HHcC---
Q 047630 300 DIVHSM-HVLSNWIPTTLLHFLMFDIYR-VLRPGGLFWLDHFFCVGAQL------------EDVYVPLI----ESVG--- 358 (392)
Q Consensus 300 DlV~s~-~~l~~~~~~~~l~~~L~el~R-vLKPGG~lii~~~~~~~~~l------------~~~l~~ll----~~aG--- 358 (392)
.+++.. .++.++ ++.....+|+++.+ .|+|||.|++..-.+...+. .+...+++ ...|
T Consensus 158 r~~~flGSsiGNf-~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~~~ 236 (319)
T TIGR03439 158 TTILWLGSSIGNF-SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEILGSEA 236 (319)
T ss_pred cEEEEeCccccCC-CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHHHhCccc
Confidence 677665 467675 44555689999999 99999999886533322211 12122222 2223
Q ss_pred CeEEEEEEeeccCCCCcccceee
Q 047630 359 FNKLKWVVGRKLDRGPELREMYL 381 (392)
Q Consensus 359 f~~i~w~~~~k~d~~~~~~e~yl 381 (392)
|..-.|......+.....-+.|+
T Consensus 237 Fd~~~f~h~a~~n~~~~rie~~l 259 (319)
T TIGR03439 237 FREEDWEFLGEWDEELGRHEAFY 259 (319)
T ss_pred cCHHHcEEEEEEcCCCCeEEEEE
Confidence 76777777666665444456665
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0023 Score=64.03 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=62.6
Q ss_pred cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc----------CCccEEEeccCcC-CCCCCcccEE
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQRL-PFFDNTLDIV 302 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~L-pf~d~sFDlV 302 (392)
..+.||.||+|.|..+..+.+.. ..++.+++|. ...+.+.+. ..++++.+|.... ...+++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 34566999999999999888743 3577755554 444332221 1356777775542 3346789999
Q ss_pred EEcccccccC--Cch--hHHHHHH-HHHHcccCCcEEEEE
Q 047630 303 HSMHVLSNWI--PTT--LLHFLMF-DIYRVLRPGGLFWLD 337 (392)
Q Consensus 303 ~s~~~l~~~~--~~~--~l~~~L~-el~RvLKPGG~lii~ 337 (392)
+.-. ...+. +.. --.++++ .+.+.|+|||++++.
T Consensus 181 i~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9763 22110 010 1235777 899999999998765
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.01 Score=59.74 Aligned_cols=130 Identities=11% Similarity=0.040 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhCC--CCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcC
Q 047630 221 LDFSIDEVLATKK--PGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~--~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~L 292 (392)
.+.+++.+.+... +++ |||++||+|.++..+++....|++++++ ....+. +...+ .+.++.+|+.++
T Consensus 183 ~~~l~~~v~~~~~~~~~~---vlDl~~G~G~~sl~la~~~~~v~~vE~~--~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 183 NIKMLEWACEVTQGSKGD---LLELYCGNGNFSLALAQNFRRVLATEIA--KPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHHhhcCCCc---EEEEeccccHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 4556666655442 223 5999999999999999877788885544 344432 22233 267888886553
Q ss_pred C--------C---C-----CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHH
Q 047630 293 P--------F---F-----DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIES 356 (392)
Q Consensus 293 p--------f---~-----d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~ 356 (392)
- + . ...||+|+..-.-.. ..+.+++.+. +|+++++++.- ...+...+..+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G-----~~~~~l~~l~---~~~~ivYvsC~---p~tlaRDl~~L~-- 324 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG-----LDPDTCKLVQ---AYERILYISCN---PETLKANLEQLS-- 324 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCCCCC-----CcHHHHHHHH---cCCcEEEEEcC---HHHHHHHHHHHh--
Confidence 1 1 0 113798886543211 1123445444 47888888742 334444455444
Q ss_pred cCCeEEEEEEee
Q 047630 357 VGFNKLKWVVGR 368 (392)
Q Consensus 357 aGf~~i~w~~~~ 368 (392)
.||+..+.....
T Consensus 325 ~~Y~l~~v~~~D 336 (353)
T TIGR02143 325 ETHRVERFALFD 336 (353)
T ss_pred cCcEEEEEEEcc
Confidence 247776665443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0018 Score=63.47 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH---------cCCEEEEEecCCCchhHH----HHHhcCC----cc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME---------RNITIVTTSMNLNGPFNN----FIASRGV----VP 283 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~---------~g~~vvg~~iD~~a~~~~----~aa~rg~----i~ 283 (392)
...++.+++...++.+| ||-+||+|.|...+.+ ....++|+|+|. .... .+.-++. ..
T Consensus 34 i~~l~~~~~~~~~~~~V---lDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~--~~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSV---LDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDP--EAVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHTT-TTEEE---EETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-H--HHHHHHHHHHHHTTHHCBGCE
T ss_pred HHHHHHhhhhcccccee---echhhhHHHHHHHHHHhhcccccccccceeEeecCcH--HHHHHHHhhhhhhcccccccc
Confidence 44455555533333334 9999999999887765 456788866554 2222 1122331 23
Q ss_pred EEEeccCcCCCC--CCcccEEEEccccccc--CCc----------------hhHHHHHHHHHHcccCCcEEEEEeecc--
Q 047630 284 LYISISQRLPFF--DNTLDIVHSMHVLSNW--IPT----------------TLLHFLMFDIYRVLRPGGLFWLDHFFC-- 341 (392)
Q Consensus 284 ~~~~d~~~Lpf~--d~sFDlV~s~~~l~~~--~~~----------------~~l~~~L~el~RvLKPGG~lii~~~~~-- 341 (392)
+..+|....+.. ...||+|+++..+... ... ..--.++..+.+.||+||++.+.....
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L 188 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFL 188 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHH
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhh
Confidence 666665444332 4789999998554322 110 111247888999999999875554321
Q ss_pred cccchHHHHHHHHHHc
Q 047630 342 VGAQLEDVYVPLIESV 357 (392)
Q Consensus 342 ~~~~l~~~l~~ll~~a 357 (392)
........+++.+-+.
T Consensus 189 ~~~~~~~~iR~~ll~~ 204 (311)
T PF02384_consen 189 FSSSSEKKIRKYLLEN 204 (311)
T ss_dssp HGSTHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHhh
Confidence 1122233466555543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0049 Score=57.94 Aligned_cols=110 Identities=13% Similarity=0.103 Sum_probs=70.2
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH---cCCEEEEEecCCCchhHH--HHHhcC---CccEEEeccCc-C-
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME---RNITIVTTSMNLNGPFNN--FIASRG---VVPLYISISQR-L- 292 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~---~g~~vvg~~iD~~a~~~~--~aa~rg---~i~~~~~d~~~-L- 292 (392)
.+++.+.++...++. ||||.=||+-+..+|. .+-.++++++|.++.... .....| .+.++++.+.+ |
T Consensus 63 ~fl~~li~~~~ak~~---lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 63 QFLQMLIRLLNAKRT---LELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHhCCceE---EEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 345555555554555 9999999997777766 355788866655322221 233333 36777775332 2
Q ss_pred ----CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 293 ----PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 293 ----pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
....++||+|+. .+|.+ .--..+.++.+.||+||+++++...+
T Consensus 140 ~l~~~~~~~tfDfaFv----DadK~--nY~~y~e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFV----DADKD--NYSNYYERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred HHHhcCCCCceeEEEE----ccchH--HHHHHHHHHHhhcccccEEEEecccc
Confidence 225689999984 33322 22268899999999999999998543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=57.19 Aligned_cols=135 Identities=16% Similarity=0.040 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH---cCCEEEEEecCCCchhHH---HHHhcCC----ccEEEec-c
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME---RNITIVTTSMNLNGPFNN---FIASRGV----VPLYISI-S 289 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~---~g~~vvg~~iD~~a~~~~---~aa~rg~----i~~~~~d-~ 289 (392)
....+.++....++-+.++|||+|+|.|..+....+ .-.+++. +|.+..+.. .+.+... ..+.... .
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~--vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 95 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTC--VDRSPEMLELAKRLLRAGPNNRNAEWRRVLYR 95 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeee--ecCCHHHHHHHHHHHhcccccccchhhhhhhc
Confidence 344555555433444556679999999986655555 2234555 566444433 2222221 0000000 1
Q ss_pred CcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc-ccchHHHHHHHHHHcCCeEE
Q 047630 290 QRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-GAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 290 ~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~-~~~l~~~l~~ll~~aGf~~i 362 (392)
...++. ..|+|+++++|..+.+ .....+++.+.+.+.+ .|+|.+.... .-+.-...++.+.+.|+.++
T Consensus 96 ~~~~~~--~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 96 DFLPFP--PDDLVIASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred ccccCC--CCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 112222 2399999999988766 7777888888887766 7777765433 22334457777777776554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0032 Score=60.55 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=52.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-------CccEEEeccCcCCCCCCcccEEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-------VVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-------~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
+++... ||++|.|||.++..|.+.+.+|+++.+|. -+.....+|. ...++++|....++ ..||.++
T Consensus 56 ~k~tD~---VLEvGPGTGnLT~~lLe~~kkVvA~E~Dp--rmvael~krv~gtp~~~kLqV~~gD~lK~d~--P~fd~cV 128 (315)
T KOG0820|consen 56 LKPTDV---VLEVGPGTGNLTVKLLEAGKKVVAVEIDP--RMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--PRFDGCV 128 (315)
T ss_pred CCCCCE---EEEeCCCCCHHHHHHHHhcCeEEEEecCc--HHHHHHHHHhcCCCccceeeEEecccccCCC--cccceee
Confidence 444444 49999999999999999999999976664 5555555552 25678888776654 3589999
Q ss_pred Ecccc
Q 047630 304 SMHVL 308 (392)
Q Consensus 304 s~~~l 308 (392)
++...
T Consensus 129 sNlPy 133 (315)
T KOG0820|consen 129 SNLPY 133 (315)
T ss_pred ccCCc
Confidence 86443
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0066 Score=60.56 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=59.9
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
.+||+||++|.++..|.++|..|+++| . .++.......+.+....++..++.-..+.+|.++|-.+-.. .
T Consensus 214 ~vlDLGAsPGGWT~~L~~rG~~V~AVD--~-g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~P----~--- 283 (357)
T PRK11760 214 RAVDLGAAPGGWTYQLVRRGMFVTAVD--N-GPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEKP----A--- 283 (357)
T ss_pred EEEEeCCCCcHHHHHHHHcCCEEEEEe--c-hhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccCH----H---
Confidence 349999999999999999999999955 4 44555556666677777776655323678999999766322 2
Q ss_pred HHHHHHHHcccCC
Q 047630 319 FLMFDIYRVLRPG 331 (392)
Q Consensus 319 ~~L~el~RvLKPG 331 (392)
.+.+-+.+.|..|
T Consensus 284 rva~lm~~Wl~~g 296 (357)
T PRK11760 284 RVAELMAQWLVNG 296 (357)
T ss_pred HHHHHHHHHHhcC
Confidence 4566666677665
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=58.05 Aligned_cols=142 Identities=17% Similarity=0.145 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhCCC-----CcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhH---HHHH---hc-CC---ccEE
Q 047630 221 LDFSIDEVLATKKP-----GTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN---NFIA---SR-GV---VPLY 285 (392)
Q Consensus 221 ~~~lI~~ll~l~~~-----~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~---~~aa---~r-g~---i~~~ 285 (392)
...+|+++..+-+. .+++ +|-=|||.|+++..++..|..+.|-. ++.-+. .++. +. +. -+|+
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~-iLvPGaGlGRLa~dla~~G~~~qGNE--fSy~Mli~S~FiLN~~~~~nq~~IYPfI 207 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIR-ILVPGAGLGRLAYDLACLGFKCQGNE--FSYFMLICSSFILNYCKQENQFTIYPFI 207 (369)
T ss_pred hhhHHHHHHhhCCCccccccCce-EEecCCCchhHHHHHHHhcccccccH--HHHHHHHHHHHHHHhhccCCcEEEEeee
Confidence 56678887766543 2443 49999999999999999999888732 211111 1222 11 10 1121
Q ss_pred E------------------------------------eccCcC---CCCCCcccEEEEcccccccCCchhHHHHHHHHHH
Q 047630 286 I------------------------------------SISQRL---PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYR 326 (392)
Q Consensus 286 ~------------------------------------~d~~~L---pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~R 326 (392)
+ ||..+. +-..++||+|+..+.+.- ..++-+.+..+..
T Consensus 208 h~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT---a~NileYi~tI~~ 284 (369)
T KOG2798|consen 208 HQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT---AHNILEYIDTIYK 284 (369)
T ss_pred eccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec---hHHHHHHHHHHHH
Confidence 1 111110 111246999998865533 3566789999999
Q ss_pred cccCCcEEEE-----Eeeccccc---c-----hHHHHHHHHHHcCCeEEEEEEee
Q 047630 327 VLRPGGLFWL-----DHFFCVGA---Q-----LEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 327 vLKPGG~lii-----~~~~~~~~---~-----l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+|||||+++- -+|....+ + .-+++..+++..||++++-+.+.
T Consensus 285 iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 285 ILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred hccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 9999999843 33333221 1 15568889999999999887444
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0053 Score=56.43 Aligned_cols=129 Identities=17% Similarity=0.178 Sum_probs=70.7
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhH----------HHHHhc-C--CccEEEeccCcCCCC
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFN----------NFIASR-G--VVPLYISISQRLPFF 295 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~----------~~aa~r-g--~i~~~~~d~~~Lpf~ 295 (392)
+++++..| +|+=.|.|+|+..++. .+++.+....-. .+.. ..+.+. . .++.+-.....++ +
T Consensus 45 Glkpg~tV---id~~PGgGy~TrI~s~~vgp~G~Vy~~~p-~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~ 119 (238)
T COG4798 45 GLKPGATV---IDLIPGGGYFTRIFSPAVGPKGKVYAYVP-AELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-A 119 (238)
T ss_pred ccCCCCEE---EEEecCCccHhhhhchhcCCceeEEEecc-hhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-C
Confidence 46676666 9999999999999987 344332211211 1110 011111 1 1222222222333 2
Q ss_pred CCcccEEEEccccccc----CCchhHHHHHHHHHHcccCCcEEEEEeecc-cccc----------hHHHHHHHHHHcCCe
Q 047630 296 DNTLDIVHSMHVLSNW----IPTTLLHFLMFDIYRVLRPGGLFWLDHFFC-VGAQ----------LEDVYVPLIESVGFN 360 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~----~~~~~l~~~L~el~RvLKPGG~lii~~~~~-~~~~----------l~~~l~~ll~~aGf~ 360 (392)
....|++......|.+ .......++..++++.|||||.+.+.+... .... ......+..+.+||+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFk 199 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFK 199 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcce
Confidence 3334555443222211 124556789999999999999997776422 1111 155677889999998
Q ss_pred EEE
Q 047630 361 KLK 363 (392)
Q Consensus 361 ~i~ 363 (392)
..-
T Consensus 200 l~a 202 (238)
T COG4798 200 LEA 202 (238)
T ss_pred eee
Confidence 754
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0087 Score=57.82 Aligned_cols=115 Identities=9% Similarity=0.000 Sum_probs=70.2
Q ss_pred CCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----------cCCccEEEeccCcCCCCCCcccEEE
Q 047630 234 PGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 234 ~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
..+.++||=||.|.|..+..+.+...+|+-+++|. ...+.+.+ ...++++.. .. .-..++||+|+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~--~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVII 144 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE--KILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLII 144 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH--HHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEE
Confidence 35567779999999999999999766788866654 33322221 112333331 11 11246899999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEe--ecccccchHHHHHHHHHHcCCeEEE
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH--FFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~--~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
.-..+ + +.+.+.++|+|+|||+++... .+-..+.. ..+.+.+++ .|..+.
T Consensus 145 vDs~~-----~---~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~-~~i~~~l~~-~F~~v~ 196 (262)
T PRK00536 145 CLQEP-----D---IHKIDGLKRMLKEDGVFISVAKHPLLEHVSM-QNALKNMGD-FFSIAM 196 (262)
T ss_pred EcCCC-----C---hHHHHHHHHhcCCCcEEEECCCCcccCHHHH-HHHHHHHHh-hCCceE
Confidence 76432 1 247899999999999998864 22222222 334445555 477543
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0072 Score=62.43 Aligned_cols=99 Identities=18% Similarity=0.267 Sum_probs=74.7
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhcC-----CccEEEeccCcCCCCCCcccEEEEcccccccC
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASRG-----VVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~rg-----~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
++|-+|||.-.+...+-+-|. .++. +|.+....+.+..++ ...+...+...+.|++++||+|+.-..+++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~--iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITN--IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCcee--ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 349999999999999998765 4656 445344444333333 35678889999999999999999999888765
Q ss_pred Cch-------hHHHHHHHHHHcccCCcEEEEEee
Q 047630 313 PTT-------LLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 313 ~~~-------~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.++ .+...+.++.|+|++||+++...+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 433 234578999999999999876665
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0092 Score=58.26 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=64.0
Q ss_pred CcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc----------CCccEEEeccCcC-CCCCCcccE
Q 047630 235 GTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQRL-PFFDNTLDI 301 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~L-pf~d~sFDl 301 (392)
++.+.||-||.|.|..+..+.+.. ..++.+++|. ...+.+.+. ..++++.+|...+ .-..++||+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~--~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP--AVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH--HHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 344677999999999999999976 4566655543 333322221 1245666664433 223348999
Q ss_pred EEEcccccccCCchh--HHHHHHHHHHcccCCcEEEEE
Q 047630 302 VHSMHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 302 V~s~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~ 337 (392)
|+.-..=. ..+-+. -..+++.++|+|+++|+++..
T Consensus 153 Ii~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99753321 111011 146999999999999999888
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0037 Score=57.15 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=61.6
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC---CccEEEeccCc-C---CCCCCccc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG---VVPLYISISQR-L---PFFDNTLD 300 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~-L---pf~d~sFD 300 (392)
.+..+ ||+-||+|.++....++|+ .|+.++.|. .... ++..-+ .+.++..|+.. + .-....||
T Consensus 42 ~g~~v---LDLFaGSGalGlEALSRGA~~v~fVE~~~--~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARV---LDLFAGSGALGLEALSRGAKSVVFVEKNR--KAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EE---EETT-TTSHHHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeE---EEcCCccCccHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCce
Confidence 44555 9999999999999999985 677755443 2222 222223 24556666332 2 12468899
Q ss_pred EEEEcccccccCCchhHHHHHHHHH--HcccCCcEEEEEeecc
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIY--RVLRPGGLFWLDHFFC 341 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~--RvLKPGG~lii~~~~~ 341 (392)
+|+.--.+... .....++..+. ..|+++|.+++.+...
T Consensus 117 iIflDPPY~~~---~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFLDPPYAKG---LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE--STTSC---HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEECCCcccc---hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99987655332 11356777776 8999999999997554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.069 Score=50.65 Aligned_cols=123 Identities=16% Similarity=0.203 Sum_probs=73.8
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC--CCCcccEEEEcccccccCCch
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF--FDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf--~d~sFDlV~s~~~l~~~~~~~ 315 (392)
++||+|.-||.|+..+.++|+ .|+++|+-.+.-........+.+.+...++..+.- ..+..|+++|--++..
T Consensus 82 v~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFIS----- 156 (245)
T COG1189 82 VVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFIS----- 156 (245)
T ss_pred EEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhh-----
Confidence 359999999999999999975 58885544322111111111112222223333311 1236789998877754
Q ss_pred hHHHHHHHHHHcccCCcEEEEEe--ecc-------c---------ccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDH--FFC-------V---------GAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~--~~~-------~---------~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+..+|..+..+++++|.++.-. -+. . .......+.+.+++.||........
T Consensus 157 -L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 157 -LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred -HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 3568999999999999875442 110 0 0112445777788889888765533
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.036 Score=52.02 Aligned_cols=121 Identities=19% Similarity=0.153 Sum_probs=77.0
Q ss_pred cEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 238 RIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
.+++|||.|.|.-+..|+= ...+++- +|.......+ ..+-+ .+.++++-++.+.-...-||+|.+..+-
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtL--les~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva- 145 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTL--LESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA- 145 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEE--EccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-
Confidence 4559999999997777663 4555666 4443333332 22223 2677777777765321119999986543
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
. +..++.=+...+|+||.++...+....++..+ .+......|+...+.....
T Consensus 146 ~------L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e-~~~a~~~~~~~~~~~~~~~ 197 (215)
T COG0357 146 S------LNVLLELCLPLLKVGGGFLAYKGLAGKDELPE-AEKAILPLGGQVEKVFSLT 197 (215)
T ss_pred c------hHHHHHHHHHhcccCCcchhhhHHhhhhhHHH-HHHHHHhhcCcEEEEEEee
Confidence 2 23466777889999999877666555555544 6667777778777665443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.056 Score=51.68 Aligned_cols=126 Identities=16% Similarity=0.093 Sum_probs=74.6
Q ss_pred cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh----------cCCccEEEeccCcC-CCCCC-cccE
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQRL-PFFDN-TLDI 301 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~L-pf~d~-sFDl 301 (392)
+.+.||=||.|.|..+..+.+.. ..++.+++|. ...+.+.+ ...++++.+|...+ .-..+ +||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~--~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP--EVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H--HHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh--HHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 44556999999999999999865 4677756554 33332211 12467888885443 22233 8999
Q ss_pred EEEcccccccCCch--hHHHHHHHHHHcccCCcEEEEEee-cccccchHHHHHHHHHHcCCeEEEEE
Q 047630 302 VHSMHVLSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDHF-FCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 302 V~s~~~l~~~~~~~--~l~~~L~el~RvLKPGG~lii~~~-~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
|+.-..- ...+.. --..+++.+.+.|+|||++++..- ..........+.+.+++... .+...
T Consensus 154 Ii~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~ 218 (246)
T PF01564_consen 154 IIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPY 218 (246)
T ss_dssp EEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEE
T ss_pred EEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEE
Confidence 9974332 111111 124689999999999999987652 11122333446666777744 44433
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.058 Score=54.33 Aligned_cols=148 Identities=16% Similarity=0.092 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcCC-
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRLP- 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~Lp- 293 (392)
.+.+++.++++.+...- .+||+-||.|.++..|++....|+|++++. ...+ .+..++ .++|+.++++++.
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~--~av~~A~~Na~~N~i~n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVE--EAVEDARENAKLNGIDNVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-H--HHHHHHHHHHHHTT--SEEEEE--SHHCCC
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCH--HHHHHHHHHHHHcCCCcceEEEeeccchhH
Confidence 56677777765543221 359999999999999999999999966443 3322 333444 2677776554331
Q ss_pred ---------------CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC
Q 047630 294 ---------------FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 294 ---------------f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG 358 (392)
.....+|+|+.--.-... + +.++..+.+ +.=+++++ |....+...+..+ .+ |
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~-~----~~~~~~~~~---~~~ivYvS---CnP~tlaRDl~~L-~~-~ 325 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL-D----EKVIELIKK---LKRIVYVS---CNPATLARDLKIL-KE-G 325 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE---TT-S-C----HHHHHHHHH---SSEEEEEE---S-HHHHHHHHHHH-HC-C
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc-h----HHHHHHHhc---CCeEEEEE---CCHHHHHHHHHHH-hh-c
Confidence 123368888764332221 1 123343332 33344444 4444455556544 43 8
Q ss_pred CeEEEEEEeeccCCCCcccceeeEEEEEc
Q 047630 359 FNKLKWVVGRKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 359 f~~i~w~~~~k~d~~~~~~e~ylsai~~K 387 (392)
|+..+.....-.-.+ ..-|. .++++|
T Consensus 326 y~~~~v~~~DmFP~T-~HvE~--v~lL~r 351 (352)
T PF05958_consen 326 YKLEKVQPVDMFPQT-HHVET--VALLER 351 (352)
T ss_dssp EEEEEEEEE-SSTTS-S--EE--EEEEEE
T ss_pred CEEEEEEEeecCCCC-CcEEE--EEEEEe
Confidence 998877766432221 23343 356665
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.026 Score=58.36 Aligned_cols=134 Identities=15% Similarity=0.143 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH--HHHhcCC--ccEEEeccCcCCCC-
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN--FIASRGV--VPLYISISQRLPFF- 295 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~--~aa~rg~--i~~~~~d~~~Lpf~- 295 (392)
.+.+++.+++......-..+||+=||.|.|+..|+++...|+|++++..+...+ +++.++. +.|..++++++.-.
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 555666665543322222349999999999999999999999966554222221 3334442 67888888776543
Q ss_pred --CCcccEEEEcccccccCCchhHH-HHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 296 --DNTLDIVHSMHVLSNWIPTTLLH-FLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 296 --d~sFDlV~s~~~l~~~~~~~~l~-~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
...+|.|+..-.- .++. .+++.+. .++|-.+++++ |....+...+. .+.+.||++.+..
T Consensus 358 ~~~~~~d~VvvDPPR------~G~~~~~lk~l~-~~~p~~IvYVS---CNP~TlaRDl~-~L~~~gy~i~~v~ 419 (432)
T COG2265 358 WEGYKPDVVVVDPPR------AGADREVLKQLA-KLKPKRIVYVS---CNPATLARDLA-ILASTGYEIERVQ 419 (432)
T ss_pred cccCCCCEEEECCCC------CCCCHHHHHHHH-hcCCCcEEEEe---CCHHHHHHHHH-HHHhCCeEEEEEE
Confidence 3578999865333 2222 3555555 45777788777 33334444344 4566677754443
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.02 Score=55.35 Aligned_cols=105 Identities=18% Similarity=0.090 Sum_probs=57.8
Q ss_pred cccEEEEEcCCcch--HHHHHHH---cCCEEEEEecCCCchhHH--HH--Hhc--CCccEEEeccCcCC------CCCCc
Q 047630 236 TIRIGLDIGGGVAT--FAVRMME---RNITIVTTSMNLNGPFNN--FI--ASR--GVVPLYISISQRLP------FFDNT 298 (392)
Q Consensus 236 ~ir~VLDIGCGtG~--~a~~La~---~g~~vvg~~iD~~a~~~~--~a--a~r--g~i~~~~~d~~~Lp------f~d~s 298 (392)
.|+..||||||-=. .....++ ....|+.+|.|+ .... .+ ... |...++.+|..+.. --.+.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP--vv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP--VVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH--HHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc--hHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 67888999999643 4455554 577888877654 2222 22 222 22567788755421 11122
Q ss_pred cc-----EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 299 LD-----IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 299 FD-----lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
+| .|+...++|++.+.++...+++.+...|-||.+|.|++....
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 33 567778888877778889999999999999999999998654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0006 Score=60.30 Aligned_cols=56 Identities=29% Similarity=0.327 Sum_probs=45.6
Q ss_pred ccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 282 VPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 282 i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+.+++......+|.+++.|+|.+.+++.|+.-++. ..++++++|+|||||+|-+..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEEc
Confidence 34444455667899999999999999999766555 589999999999999996663
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.11 Score=48.43 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=71.9
Q ss_pred EEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH----HHHhcC---CccEEEecc-CcCCCCCCcccEEEEccccc
Q 047630 240 GLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN----FIASRG---VVPLYISIS-QRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~-~~Lpf~d~sFDlV~s~~~l~ 309 (392)
|.||||--|++..+|.+.|. .++++|++. ...+ .+.+.+ .+.+..+|. ..++- .+..|.|+.+..--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~--gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINP--GPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSH--HHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecCCH
Confidence 48999999999999999887 456644443 2222 333444 377888884 44432 22368887665421
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
..+..+|.+....++..-.|++..... ...+++++.+.||..+.-..+.
T Consensus 78 -----~lI~~ILe~~~~~~~~~~~lILqP~~~-----~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 78 -----ELIIEILEAGPEKLSSAKRLILQPNTH-----AYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp -----HHHHHHHHHTGGGGTT--EEEEEESS------HHHHHHHHHHTTEEEEEEEEEE
T ss_pred -----HHHHHHHHhhHHHhccCCeEEEeCCCC-----hHHHHHHHHHCCCEEEEeEEEe
Confidence 334567777777777766777764322 3558999999999999888775
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.016 Score=54.75 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=52.7
Q ss_pred cEEEeccCcC--CCCCCcccEEEEccccc----ccCC--------chhHHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 283 PLYISISQRL--PFFDNTLDIVHSMHVLS----NWIP--------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 283 ~~~~~d~~~L--pf~d~sFDlV~s~~~l~----~~~~--------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
.++++|+.++ .++++++|+|++.-... .... .+-.+.++.|++|+|||||.+++.... ... .
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~---~~~-~ 78 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW---NRV-D 78 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---ccH-H
Confidence 4566775543 56789999999874331 0000 122457899999999999998763211 112 2
Q ss_pred HHHHHHHHcCCeEEEEEEeecc
Q 047630 349 VYVPLIESVGFNKLKWVVGRKL 370 (392)
Q Consensus 349 ~l~~ll~~aGf~~i~w~~~~k~ 370 (392)
.+...++++||....+-+-.|.
T Consensus 79 ~~~~al~~~GF~l~~~IiW~K~ 100 (227)
T PRK13699 79 RFMAAWKNAGFSVVGHLVFTKN 100 (227)
T ss_pred HHHHHHHHCCCEEeeEEEEECC
Confidence 3666789999976554444443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.029 Score=61.62 Aligned_cols=98 Identities=15% Similarity=-0.008 Sum_probs=61.4
Q ss_pred EEEEEcCCcchHHHHHHHc--------------------------------------------CCEEEEEecCCCchhHH
Q 047630 239 IGLDIGGGVATFAVRMMER--------------------------------------------NITIVTTSMNLNGPFNN 274 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--------------------------------------------g~~vvg~~iD~~a~~~~ 274 (392)
.++|-+||+|++.+..+.. ...++|+|+|. ....
T Consensus 193 ~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~--~av~ 270 (702)
T PRK11783 193 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDP--RVIQ 270 (702)
T ss_pred eEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCH--HHHH
Confidence 3599999999988766541 12567755554 3332
Q ss_pred ----HHHhcCC---ccEEEeccCcCCCC--CCcccEEEEcccccc-cCCchhHHHHHHHHHHccc---CCcEEEEEe
Q 047630 275 ----FIASRGV---VPLYISISQRLPFF--DNTLDIVHSMHVLSN-WIPTTLLHFLMFDIYRVLR---PGGLFWLDH 338 (392)
Q Consensus 275 ----~aa~rg~---i~~~~~d~~~Lpf~--d~sFDlV~s~~~l~~-~~~~~~l~~~L~el~RvLK---PGG~lii~~ 338 (392)
++...|+ +.+.++|+.+++.+ .++||+|+++-.+.. +....+++.+..++.+.+| +|+.+++..
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3333443 67888998887654 357999999965532 2233445555555555554 888886553
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.01 Score=57.08 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=64.7
Q ss_pred cccceeccCCCCcHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cCCcc
Q 047630 208 EKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RGVVP 283 (392)
Q Consensus 208 e~~~w~~~~~~~~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg~i~ 283 (392)
-+++|+.... -++.+++ .+.+.++..| ||||.|.|.++..|.+.+..+++++.| ........+ .+.+.
T Consensus 8 ~gQnFL~~~~--~~~~Iv~-~~~~~~~~~V---lEiGpG~G~lT~~L~~~~~~v~~vE~d--~~~~~~L~~~~~~~~~~~ 79 (262)
T PF00398_consen 8 LGQNFLVDPN--IADKIVD-ALDLSEGDTV---LEIGPGPGALTRELLKRGKRVIAVEID--PDLAKHLKERFASNPNVE 79 (262)
T ss_dssp CTSSEEEHHH--HHHHHHH-HHTCGTTSEE---EEESSTTSCCHHHHHHHSSEEEEEESS--HHHHHHHHHHCTTCSSEE
T ss_pred CCcCeeCCHH--HHHHHHH-hcCCCCCCEE---EEeCCCCccchhhHhcccCcceeecCc--HhHHHHHHHHhhhcccce
Confidence 3466765322 1222332 2333344445 999999999999999999889995554 455554444 24578
Q ss_pred EEEeccCcCCCCC---CcccEEEEcccccccCCchhHHHHHHHHHH
Q 047630 284 LYISISQRLPFFD---NTLDIVHSMHVLSNWIPTTLLHFLMFDIYR 326 (392)
Q Consensus 284 ~~~~d~~~Lpf~d---~sFDlV~s~~~l~~~~~~~~l~~~L~el~R 326 (392)
++.+|+..+..++ +.-..|+++... +. . ..++..+..
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~NlPy-~i---s--~~il~~ll~ 119 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNLPY-NI---S--SPILRKLLE 119 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEETG-TG---H--HHHHHHHHH
T ss_pred eeecchhccccHHhhcCCceEEEEEecc-cc---h--HHHHHHHhh
Confidence 9999998887655 455677776544 32 1 235555555
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.07 Score=51.56 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=79.9
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCC-
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPF- 294 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf- 294 (392)
+|-.++++.++..| |+-|.|+|.++.++++ -+++......|+.....+.+. +.+ .+.+.+-|+...-|
T Consensus 96 ~I~~~L~i~PGsvV---~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 96 MILSMLEIRPGSVV---LESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHhcCCCCCEE---EecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 45566778888777 9999999999999988 344444434555444444333 223 36777777665544
Q ss_pred -CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 295 -FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 295 -~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
.+..+|+|+.-.. ..| .++--++.+||.+|.-+.. |-.--+.+. .-.+.+.++||..+...
T Consensus 173 ~ks~~aDaVFLDlP-aPw-------~AiPha~~~lk~~g~r~cs-FSPCIEQvq-rtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 173 IKSLKADAVFLDLP-APW-------EAIPHAAKILKDEGGRLCS-FSPCIEQVQ-RTCEALRSLGFIEIETV 234 (314)
T ss_pred ccccccceEEEcCC-Chh-------hhhhhhHHHhhhcCceEEe-ccHHHHHHH-HHHHHHHhCCCceEEEE
Confidence 3678998886432 233 3567777799988853332 221122222 35567788898776544
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.023 Score=55.63 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=63.9
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC----CccEEEeccCcC-C--CCCCc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG----VVPLYISISQRL-P--FFDNT 298 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg----~i~~~~~d~~~L-p--f~d~s 298 (392)
...+.+| ||+=|=||.|+.+.+..|+ .|+.+| .+....+ +++.++ .++++.+|+... . -..++
T Consensus 121 ~~~gkrv---LnlFsYTGgfsv~Aa~gGA~~v~~VD--~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 121 YAKGKRV---LNLFSYTGGFSVAAAAGGAKEVVSVD--SSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp HCTTCEE---EEET-TTTHHHHHHHHTTESEEEEEE--S-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-
T ss_pred HcCCCce---EEecCCCCHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCC
Confidence 3455555 9999999999999888886 677744 4334333 333334 256788875432 1 12468
Q ss_pred ccEEEEccc-c--cccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 299 LDIVHSMHV-L--SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 299 FDlV~s~~~-l--~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
||+|++--. + ..+.-..+...++..+.++|+|||.|++..-
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 999998522 1 1111123556788999999999999876653
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0057 Score=57.01 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=50.3
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHH-cCCE-EEEEecCCCchhHHHHH-----------hcC----CccEEEeccCcC
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMME-RNIT-IVTTSMNLNGPFNNFIA-----------SRG----VVPLYISISQRL 292 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa-----------~rg----~i~~~~~d~~~L 292 (392)
.+.+++.+ +|||||.|......+- .+.. ++|+.+.. .....+. ..| .+.+..+|..+.
T Consensus 39 ~l~~~dvF---~DlGSG~G~~v~~aal~~~~~~~~GIEi~~--~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 39 NLTPDDVF---YDLGSGVGNVVFQAALQTGCKKSVGIEILP--ELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp T--TT-EE---EEES-TTSHHHHHHHHHH--SEEEEEE-SH--HHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred CCCCCCEE---EECCCCCCHHHHHHHHHcCCcEEEEEEech--HHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 45555555 9999999997555543 4544 78855443 2222111 112 144555654433
Q ss_pred CCCC---CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 293 PFFD---NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 293 pf~d---~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
++.. ..-|+|+++..... +.+...|.++..-||+|-+++-..-++
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~----~~l~~~L~~~~~~lk~G~~IIs~~~~~ 161 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFD----PDLNLALAELLLELKPGARIISTKPFC 161 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT-----HHHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred HhHhhhhcCCCEEEEeccccC----HHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 2211 23599999866422 344556688888999998887655443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.053 Score=49.71 Aligned_cols=145 Identities=18% Similarity=0.146 Sum_probs=77.0
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhcCCccEEEe-ccCcC--------CCCCCcccE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASRGVVPLYIS-ISQRL--------PFFDNTLDI 301 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~-d~~~L--------pf~d~sFDl 301 (392)
.++..| ||+||..|.++.-..++ ++.....++|+ .. ...-+| +.++.+ |+.+- ..++...|+
T Consensus 68 ~p~~~V---lD~G~APGsWsQVavqr~~p~g~v~gVDl-lh---~~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r~Vdv 139 (232)
T KOG4589|consen 68 RPEDTV---LDCGAAPGSWSQVAVQRVNPNGMVLGVDL-LH---IEPPEG-ATIIQGNDVTDPETYRKIFEALPNRPVDV 139 (232)
T ss_pred CCCCEE---EEccCCCChHHHHHHHhhCCCceEEEEee-ee---ccCCCC-cccccccccCCHHHHHHHHHhCCCCcccE
Confidence 355556 99999999998877774 45544444665 11 112223 223333 32210 225678999
Q ss_pred EEEcccccc----cCCchhH----HHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCC
Q 047630 302 VHSMHVLSN----WIPTTLL----HFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRG 373 (392)
Q Consensus 302 V~s~~~l~~----~~~~~~l----~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~ 373 (392)
|++-.+-.. ..+.... ..++.-....++|+|.|+.-.+...++.. ++..+.+. |+.++-..-... -
T Consensus 140 VlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~---l~r~l~~~-f~~Vk~vKP~As--r 213 (232)
T KOG4589|consen 140 VLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEAL---LQRRLQAV-FTNVKKVKPDAS--R 213 (232)
T ss_pred EEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHH---HHHHHHHH-hhhcEeeCCccc--c
Confidence 998654321 1111111 12333344677899999988766544332 33334333 666654422211 1
Q ss_pred CcccceeeEEEEEcCCC
Q 047630 374 PELREMYLSALLEKPFL 390 (392)
Q Consensus 374 ~~~~e~ylsai~~Kp~~ 390 (392)
.+..|.|+.+.=.|+-.
T Consensus 214 ~eS~E~y~v~~~~k~~~ 230 (232)
T KOG4589|consen 214 DESAETYLVCLNFKGNV 230 (232)
T ss_pred ccccceeeeeeeccCcC
Confidence 24568888666555543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.039 Score=58.40 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=15.7
Q ss_pred EEEEEcCCcchHHHHHHH
Q 047630 239 IGLDIGGGVATFAVRMME 256 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~ 256 (392)
+|||.|||+|.+...+++
T Consensus 34 ~ilDP~cGsG~fl~~~~~ 51 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLK 51 (524)
T ss_pred EEEeCCCCccHHHHHHHH
Confidence 469999999999888876
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.032 Score=49.16 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=50.2
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHhcC------CccEEEeccCcCCCCCCcccEEEEc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIASRG------VVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~rg------~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.+.++ +|+|||.|.+....+-.+ -.++|+|+|. +..+ +..++ .+.+.+++..++.+..+.||.++.+
T Consensus 48 Egkkl---~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALE-If~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 48 EGKKL---KDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALE-IFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred cCcch---hhhcCchhhhHHHhhcCCCceEEeeecCH--HHHH-HHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 45566 999999999886666544 4677866554 3333 33332 2578888988888878999999998
Q ss_pred cccc
Q 047630 306 HVLS 309 (392)
Q Consensus 306 ~~l~ 309 (392)
..+.
T Consensus 122 ppFG 125 (185)
T KOG3420|consen 122 PPFG 125 (185)
T ss_pred CCCC
Confidence 7664
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.014 Score=52.40 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=40.3
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCC--CCCCc-ccEEEEcc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLP--FFDNT-LDIVHSMH 306 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lp--f~d~s-FDlV~s~~ 306 (392)
+|+|+.||.|..+..+++....|+++|+|. ...+. +.--| .+.++++|..++. +..+. ||+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~--~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDP--ERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-H--HHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 579999999999999999999999966554 44432 22223 3789999865542 12222 89999763
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.26 Score=45.76 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=78.7
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cC-CEEEEEecCCCchhHH---HHHhcCCccEEEeccCc---CCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RN-ITIVTTSMNLNGPFNN---FIASRGVVPLYISISQR---LPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g-~~vvg~~iD~~a~~~~---~aa~rg~i~~~~~d~~~---Lpf~d~sFDlV 302 (392)
+.++.+| |=+|.-+|+...++++ .+ -.++++..+. -++.+ .+.+|..+-=+.+|+.. ..+--+..|+|
T Consensus 74 i~~g~~V---LYLGAasGTTvSHVSDIv~~G~iYaVEfs~-R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 74 IKEGSKV---LYLGAASGTTVSHVSDIVGEGRIYAVEFSP-RPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred cCCCCEE---EEeeccCCCcHhHHHhccCCCcEEEEEecc-hhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEE
Confidence 4456666 9999999999999988 33 3466655444 23332 34445433333445332 12233458888
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec------ccccchHHHHHHHHHHcCCeEEEEEEeecc
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF------CVGAQLEDVYVPLIESVGFNKLKWVVGRKL 370 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~------~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~ 370 (392)
+.- ...+.+.+-+..++..-||+||++++.--. ...++..+.-.+.+++.||+.++-......
T Consensus 150 y~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePy 218 (231)
T COG1889 150 YQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPY 218 (231)
T ss_pred EEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCc
Confidence 763 344566677899999999999987665321 112222333344567778988876644433
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.078 Score=49.68 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCC-----ccEEEeccCcC--CCCCCcccEEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV-----VPLYISISQRL--PFFDNTLDIVHS 304 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~-----i~~~~~d~~~L--pf~d~sFDlV~s 304 (392)
.++++| |.||-|-|.....+.++.+.-+.+ |+...+..+.+.+.|. +-...+-.++. .++|+.||-|+-
T Consensus 100 tkggrv---LnVGFGMgIidT~iQe~~p~~H~I-iE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRV---LNVGFGMGIIDTFIQEAPPDEHWI-IEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceE---EEeccchHHHHHHHhhcCCcceEE-EecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe
Confidence 355667 999999999999988865432211 3333455555555542 33333332221 346889999986
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA 344 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~ 344 (392)
--.-.+. +++..+.+.+.|.|||+|+|-+..-.+.++
T Consensus 176 DTy~e~y---Edl~~~hqh~~rLLkP~gv~SyfNg~~~~~ 212 (271)
T KOG1709|consen 176 DTYSELY---EDLRHFHQHVVRLLKPEGVFSYFNGLGADN 212 (271)
T ss_pred echhhHH---HHHHHHHHHHhhhcCCCceEEEecCcccch
Confidence 5332333 677788999999999999996666554433
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.075 Score=48.77 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHh----c---CCccEEEeccCcC-CCCCC--cccE
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIAS----R---GVVPLYISISQRL-PFFDN--TLDI 301 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~----r---g~i~~~~~d~~~L-pf~d~--sFDl 301 (392)
.+.++ ||+=+|+|.++....++|+ .++.++.|. .....+.+ - +...++..|+... +-... .||+
T Consensus 43 ~g~~~---LDlFAGSGaLGlEAlSRGA~~~~~vE~~~--~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 43 EGARV---LDLFAGSGALGLEALSRGAARVVFVEKDR--KAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred CCCEE---EEecCCccHhHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccE
Confidence 34455 9999999999999999986 567755544 22222211 1 2356666665533 22222 4999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
|+.--.++.-.-+........+-...|+|+|.+++.+-.
T Consensus 118 VflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 118 VFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 998876652111112222233356789999999998643
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.024 Score=55.74 Aligned_cols=67 Identities=13% Similarity=-0.020 Sum_probs=44.5
Q ss_pred EEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCC--CC--CcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPF--FD--NTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf--~d--~sFDlV~s~~~l 308 (392)
+||.+||.|.++..+++.. ..|+|+|.| ..+...+.++ +.+.+++++...+.. .+ .++|.|++....
T Consensus 23 vlD~TlG~GGhS~~il~~~~~~g~VigiD~D--~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 23 YVDGTFGGGGHSRAILERLGPKGRLIAIDRD--PDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred EEEeCcCChHHHHHHHHhCCCCCEEEEEcCC--HHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEECCCc
Confidence 4999999999999999863 578885544 3444433322 246788887665421 12 279999875443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.006 Score=49.97 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=38.1
Q ss_pred EEEcCCcchHHHHHHH---cC--CEEEEEecCCCchhHH-HHHh---cCCccEEEeccCcC--CCCCCcccEEEEccccc
Q 047630 241 LDIGGGVATFAVRMME---RN--ITIVTTSMNLNGPFNN-FIAS---RGVVPLYISISQRL--PFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 241 LDIGCGtG~~a~~La~---~g--~~vvg~~iD~~a~~~~-~aa~---rg~i~~~~~d~~~L--pf~d~sFDlV~s~~~l~ 309 (392)
||||+..|..+..+++ .+ .+++++|......... .+.+ ...+.++.++..+. .+.+++||+|+.-.. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 6899999998887776 22 2567755433101222 2222 12477888875432 223578999986542 1
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
..+....-+..+.+.|+|||+++++++
T Consensus 80 ---~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 80 ---SYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ---CHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 225556778999999999999998863
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.031 Score=56.76 Aligned_cols=90 Identities=8% Similarity=0.039 Sum_probs=60.9
Q ss_pred EEEEcCCcchHHHHHHHc--C-CEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcCC-CCCCcccEEEEccccc
Q 047630 240 GLDIGGGVATFAVRMMER--N-ITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRLP-FFDNTLDIVHSMHVLS 309 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g-~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~Lp-f~d~sFDlV~s~~~l~ 309 (392)
|||+.||+|..+.+++.+ | ..|+++|+|. ...+ ++..++. +.++.+|+..+- .....||+|..-- +
T Consensus 48 vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~--~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 48 IADALSASGIRAIRYAHEIEGVREVFANDINP--KAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred EEECCCchhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 499999999999999986 4 4688866554 3333 2333332 456677765442 1235799998744 3
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+ ..++..+.+.+++||++.++.
T Consensus 124 --Gs~---~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 --GTP---APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CCc---HHHHHHHHHhcccCCEEEEEe
Confidence 122 248899999999999998883
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.37 Score=48.23 Aligned_cols=118 Identities=15% Similarity=0.067 Sum_probs=58.7
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH------------cC------CEEEEEecCCCchhHHH---------
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME------------RN------ITIVTTSMNLNGPFNNF--------- 275 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~------------~g------~~vvg~~iD~~a~~~~~--------- 275 (392)
..|.++.......+.-+|+|+||..|..+..+.+ .+ ++|+-.|+=. -++...
T Consensus 3 ~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~-NDFn~lF~~l~~~~~ 81 (334)
T PF03492_consen 3 EAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPS-NDFNTLFKSLPSFQQ 81 (334)
T ss_dssp HHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TT-S-HHHHHHCHHHHHH
T ss_pred HHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCC-ccHHHHHHhChhhhh
Confidence 3455555322233333559999999997765543 12 3566655322 344331
Q ss_pred -HHhcCC--ccEEEeccCcCCCCCCcccEEEEcccccccCC------------------------------------chh
Q 047630 276 -IASRGV--VPLYISISQRLPFFDNTLDIVHSMHVLSNWIP------------------------------------TTL 316 (392)
Q Consensus 276 -aa~rg~--i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~------------------------------------~~~ 316 (392)
....+. +..+-++...-=||+++.|++++..++|+... ..+
T Consensus 82 ~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D 161 (334)
T PF03492_consen 82 SLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKD 161 (334)
T ss_dssp HHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHH
T ss_pred ccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHH
Confidence 111121 11222344444578999999999999964321 012
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecc
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+..+|+-=++-|+|||++++.-...
T Consensus 162 ~~~FL~~Ra~ELv~GG~mvl~~~gr 186 (334)
T PF03492_consen 162 FSSFLKARAEELVPGGRMVLTFLGR 186 (334)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEE-
T ss_pred HHHHHHHhhheeccCcEEEEEEeec
Confidence 3334444567789999998887543
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.7 Score=44.82 Aligned_cols=142 Identities=14% Similarity=0.209 Sum_probs=79.4
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC--CCcccEEEEcccccccC-----
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF--DNTLDIVHSMHVLSNWI----- 312 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~--d~sFDlV~s~~~l~~~~----- 312 (392)
|+|+-||.|.+...+.+.|.+++. .+|++....+....+-.-..+.+|+..+... ...+|+++.......+.
T Consensus 3 v~dLFsG~Gg~~~gl~~~G~~~v~-a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~ 81 (275)
T cd00315 3 VIDLFAGIGGFRLGLEKAGFEIVA-ANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKR 81 (275)
T ss_pred EEEEccCcchHHHHHHHcCCEEEE-EEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhc
Confidence 599999999999999888887543 2444333333333322113456677666432 35699999875443211
Q ss_pred --CchhHHHHHHHHH---HcccCCcEEEEEeecc----cccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Ccccceee
Q 047630 313 --PTTLLHFLMFDIY---RVLRPGGLFWLDHFFC----VGAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREMYL 381 (392)
Q Consensus 313 --~~~~l~~~L~el~---RvLKPGG~lii~~~~~----~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~yl 381 (392)
..+....++.++. +.++|. ++++..... ......+.+.+.+++.||. +.|.+....+.| .....+|+
T Consensus 82 ~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~-~~~~~l~a~~~GvPQ~R~R~~~ 159 (275)
T cd00315 82 KGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYN-VYWKLLNASDYGVPQNRERVFI 159 (275)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcE-EEEEEEEHHHcCCCCCCcEEEE
Confidence 0111122344443 344564 445554322 1123345688889999997 567766655554 34555665
Q ss_pred EEE
Q 047630 382 SAL 384 (392)
Q Consensus 382 sai 384 (392)
.++
T Consensus 160 ia~ 162 (275)
T cd00315 160 IGI 162 (275)
T ss_pred EEE
Confidence 443
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.013 Score=48.99 Aligned_cols=68 Identities=22% Similarity=0.394 Sum_probs=41.0
Q ss_pred cccEEEEccccccc---CCchhHHHHHHHHHHcccCCcEEEEEee----ccccc----ch----------HHHHHHHHHH
Q 047630 298 TLDIVHSMHVLSNW---IPTTLLHFLMFDIYRVLRPGGLFWLDHF----FCVGA----QL----------EDVYVPLIES 356 (392)
Q Consensus 298 sFDlV~s~~~l~~~---~~~~~l~~~L~el~RvLKPGG~lii~~~----~~~~~----~l----------~~~l~~ll~~ 356 (392)
.||+|+|..+.-.+ ..++.+..+++.+++.|+|||+|++..- +.... .. ++.+.+.+.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 48999997665211 2356788999999999999999999852 11111 11 3446666665
Q ss_pred --cCCeEEEEE
Q 047630 357 --VGFNKLKWV 365 (392)
Q Consensus 357 --aGf~~i~w~ 365 (392)
.||+.++-.
T Consensus 81 ~evGF~~~e~~ 91 (110)
T PF06859_consen 81 PEVGFSSVEEL 91 (110)
T ss_dssp TTT---EEEEE
T ss_pred cccceEEEEEc
Confidence 699887633
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.046 Score=50.43 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=55.5
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-----HHHhcCC-ccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-----FIASRGV-VPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-----~aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
+|||+|.|+|..++.-+..|. .|+.+|+|+ ... +++.+|. +.+...|.-. .+..||+|+...++..-
T Consensus 82 rVLd~gagsgLvaIAaa~aGA~~v~a~d~~P---~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 82 RVLDLGAGSGLVAIAAARAGAAEVVAADIDP---WLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYNH 155 (218)
T ss_pred eeeecccccChHHHHHHHhhhHHHHhcCCCh---HHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecCc
Confidence 349999999999988888775 466655553 332 3444442 3444444332 56789999999887542
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii 336 (392)
.....++. +.+.|+..|.-++
T Consensus 156 ---~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 156 ---TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred ---hHHHHHHH-HHHHHHhCCCEEE
Confidence 33335666 6666666665444
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.15 Score=49.78 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~ 291 (392)
...+...++...++..| ||+.+|.|.=+.++++. .-.+++.|++ ..... .+.+-|. +.....|...
T Consensus 73 sS~l~~~~L~~~~~~~V---LD~CAapGgKt~~la~~~~~~g~i~A~D~~--~~Rl~~l~~~~~r~g~~~v~~~~~D~~~ 147 (283)
T PF01189_consen 73 SSQLVALALDPQPGERV---LDMCAAPGGKTTHLAELMGNKGEIVANDIS--PKRLKRLKENLKRLGVFNVIVINADARK 147 (283)
T ss_dssp HHHHHHHHHTTTTTSEE---EESSCTTSHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHHHHHTT-SSEEEEESHHHH
T ss_pred ccccccccccccccccc---cccccCCCCceeeeeecccchhHHHHhccC--HHHHHHHHHHHHhcCCceEEEEeecccc
Confidence 34455556666666666 99999999988888873 3477775543 34443 2333353 3344455544
Q ss_pred C-C-CCCCcccEEEEc------ccccccCC-------ch-------hHHHHHHHHHHcc----cCCcEEEEEeecccccc
Q 047630 292 L-P-FFDNTLDIVHSM------HVLSNWIP-------TT-------LLHFLMFDIYRVL----RPGGLFWLDHFFCVGAQ 345 (392)
Q Consensus 292 L-p-f~d~sFDlV~s~------~~l~~~~~-------~~-------~l~~~L~el~RvL----KPGG~lii~~~~~~~~~ 345 (392)
+ + .....||.|+.- .++.. .+ +. ...++|..+.+.+ ||||+++.+..--..++
T Consensus 148 ~~~~~~~~~fd~VlvDaPCSg~G~i~r-~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 148 LDPKKPESKFDRVLVDAPCSGLGTIRR-NPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE 226 (283)
T ss_dssp HHHHHHTTTEEEEEEECSCCCGGGTTT-CTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred ccccccccccchhhcCCCccchhhhhh-ccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence 4 1 233469999863 11211 11 11 1346899999999 99999999876444455
Q ss_pred hHHHHHHHHHHc-CCeE
Q 047630 346 LEDVYVPLIESV-GFNK 361 (392)
Q Consensus 346 l~~~l~~ll~~a-Gf~~ 361 (392)
-++.+...+++. .|+.
T Consensus 227 NE~vV~~fl~~~~~~~l 243 (283)
T PF01189_consen 227 NEEVVEKFLKRHPDFEL 243 (283)
T ss_dssp THHHHHHHHHHSTSEEE
T ss_pred HHHHHHHHHHhCCCcEE
Confidence 556677777775 3443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.083 Score=45.91 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=26.6
Q ss_pred CcccEEEEEcCCcchHHHHHHH------cCCEEEEEecCC
Q 047630 235 GTIRIGLDIGGGVATFAVRMME------RNITIVTTSMNL 268 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~------~g~~vvg~~iD~ 268 (392)
.....|+|+|||.|+++..|+. .+..|+++|.+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 4455669999999999999988 467888866554
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.28 Score=49.71 Aligned_cols=97 Identities=12% Similarity=0.006 Sum_probs=61.6
Q ss_pred EEEEcCCcchHHHHHHHcCC-----------------------------------------EEEEEecCCCchhHH----
Q 047630 240 GLDIGGGVATFAVRMMERNI-----------------------------------------TIVTTSMNLNGPFNN---- 274 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~-----------------------------------------~vvg~~iD~~a~~~~---- 274 (392)
++|-=||+|++++..+-.+. ..+|+|+| ....+
T Consensus 195 l~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did--~r~i~~Ak~ 272 (381)
T COG0116 195 LLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDID--PRHIEGAKA 272 (381)
T ss_pred cccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCC--HHHHHHHHH
Confidence 49999999999988776543 25575544 34433
Q ss_pred HHHhcC---CccEEEeccCcCCCCCCcccEEEEccccc-ccCCchhHH----HHHHHHHHcccCCcEEEEEe
Q 047630 275 FIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLS-NWIPTTLLH----FLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 275 ~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~-~~~~~~~l~----~~L~el~RvLKPGG~lii~~ 338 (392)
++.+.| .|.|.++|+.+++-+-+.+|+|+|+...- -+..+..++ .+.+.+.+.++--+.+++..
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 233334 38899999998865447899999995542 223333333 33445556666666776664
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.056 Score=48.49 Aligned_cols=64 Identities=23% Similarity=0.163 Sum_probs=47.8
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
...+||.|+|+.++..- +..+.+++-|.+.|+|.|.-++.... .++-.+.+.+....+||.+..
T Consensus 100 eq~tFDiIlaADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPR--Rg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPR--RGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred hhCcccEEEeccchhHH---HHHHHHHHHHHHHhCcccceeEecCc--ccchHHHHHHHHHhceeEEEe
Confidence 45689999999998653 55678999999999999996665432 233344578888889987654
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.054 Score=50.25 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=27.4
Q ss_pred EEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH
Q 047630 241 LDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN 274 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~ 274 (392)
.|||||.|.+...|+...++...+++++....+.
T Consensus 65 aDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsd 98 (249)
T KOG3115|consen 65 ADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSD 98 (249)
T ss_pred EeeccCccchhhhccccCccceeeeehhhHHHHH
Confidence 8999999999999999888766666887544443
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.055 Score=50.81 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=59.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcC----CCCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRL----PFFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~L----pf~d~sFDlV~s~~~ 307 (392)
.|+|.-||.|..+..++.+++.|+++|+|+ ....-++.+ | .+.|+++|..++ .+....+|+|..+
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisIdiDP--ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s-- 172 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAIDIDP--VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS-- 172 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEEeccH--HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC--
Confidence 349999999999999999999999977665 333322222 2 278999986543 3433334555543
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEE
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
-.|..+..+..-+.++...++|.|.-
T Consensus 173 -ppwggp~y~~~~~~DL~~~~~p~~~~ 198 (263)
T KOG2730|consen 173 -PPWGGPSYLRADVYDLETHLKPMGTK 198 (263)
T ss_pred -CCCCCcchhhhhhhhhhhhcchhHHH
Confidence 35555565556667777777777543
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.4 Score=47.22 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=37.7
Q ss_pred HHHHHHhhCCCC--cccEEEEEcCCcchHHHHHH--HcCCEEEEEecCCCchhHH--HHHhc-C---CccEEEec-cC--
Q 047630 224 SIDEVLATKKPG--TIRIGLDIGGGVATFAVRMM--ERNITIVTTSMNLNGPFNN--FIASR-G---VVPLYISI-SQ-- 290 (392)
Q Consensus 224 lI~~ll~l~~~~--~ir~VLDIGCGtG~~a~~La--~~g~~vvg~~iD~~a~~~~--~aa~r-g---~i~~~~~d-~~-- 290 (392)
+|++++...... ..-.+||||+|...+-..|. ..+...+|+|+|..+-..+ .+.++ + .|.+.... ..
T Consensus 88 ~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i 167 (299)
T PF05971_consen 88 WIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNI 167 (299)
T ss_dssp HHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SS
T ss_pred HHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcccc
Confidence 456666433221 12356999999986433332 2588999988876332222 33333 2 25555432 11
Q ss_pred --cCCCCCCcccEEEEcccccc
Q 047630 291 --RLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 291 --~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.+...++.||+.+|+-.++.
T Consensus 168 ~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 168 FDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp TTTSTT--S-EEEEEE-----S
T ss_pred chhhhcccceeeEEecCCcccc
Confidence 12224568999999987754
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.11 Score=48.28 Aligned_cols=96 Identities=6% Similarity=-0.017 Sum_probs=49.0
Q ss_pred EEEEEcCCcchHHHHHHH------cCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCC--------CCCccc
Q 047630 239 IGLDIGGGVATFAVRMME------RNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPF--------FDNTLD 300 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~------~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf--------~d~sFD 300 (392)
+|+++|.-.|.-+..+|+ ....|+|+|+|+.. ....+.+. ..++++.+|..+... ....-.
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~-~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~v 113 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP-HNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPV 113 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SSE
T ss_pred eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch-hchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCce
Confidence 349999999886666554 23688998887732 22233333 458999998654321 112223
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+|+- .+-|.. +.+.+.|+-....+++|+++++.+.
T Consensus 114 lVil-Ds~H~~---~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 114 LVIL-DSSHTH---EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEE-SS-------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred EEEE-CCCccH---HHHHHHHHHhCccCCCCCEEEEEec
Confidence 4432 222221 3444677778999999999998874
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.096 Score=48.11 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=60.4
Q ss_pred EEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-------CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 241 LDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-------VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-------~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
.|+|.|+|.++...++..-.|+++..| ++....++.+ .++++.+|+.+..| +..|+|+|-..=..++.
T Consensus 37 ~DLGaGsGiLs~~Aa~~A~rViAiE~d---Pk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~ 111 (252)
T COG4076 37 ADLGAGSGILSVVAAHAAERVIAIEKD---PKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALIE 111 (252)
T ss_pred eeccCCcchHHHHHHhhhceEEEEecC---cHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhhc
Confidence 899999999988888877788885544 3444444433 26778899999888 45799998532212222
Q ss_pred chhHHHHHHHHHHcccCCcEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~li 335 (392)
++. -.++..+...||-+|.++
T Consensus 112 E~q-VpV~n~vleFLr~d~tii 132 (252)
T COG4076 112 EKQ-VPVINAVLEFLRYDPTII 132 (252)
T ss_pred ccc-cHHHHHHHHHhhcCCccc
Confidence 222 257777777888888774
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.26 Score=50.21 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=34.1
Q ss_pred cCcCCCCCCcccEEEEcccccccCCc--h----------------------------------hHHHHHHHHHHcccCCc
Q 047630 289 SQRLPFFDNTLDIVHSMHVLSNWIPT--T----------------------------------LLHFLMFDIYRVLRPGG 332 (392)
Q Consensus 289 ~~~Lpf~d~sFDlV~s~~~l~~~~~~--~----------------------------------~l~~~L~el~RvLKPGG 332 (392)
...--||+++.+++|+++++|. ... + ++..+|+-=.+-|+|||
T Consensus 153 FY~RLfP~~Slh~~~Ss~slHW-LS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG 231 (386)
T PLN02668 153 FYRRLFPARSIDVFHSAFSLHW-LSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGG 231 (386)
T ss_pred ccccccCCCceEEEEeecccee-cccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3333478999999999999964 331 0 12334444467789999
Q ss_pred EEEEEee
Q 047630 333 LFWLDHF 339 (392)
Q Consensus 333 ~lii~~~ 339 (392)
.+++.-.
T Consensus 232 ~mvl~~~ 238 (386)
T PLN02668 232 AMFLVCL 238 (386)
T ss_pred EEEEEEe
Confidence 9988854
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.057 Score=56.25 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH--HHHhcC--CccEEEeccCcC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN--FIASRG--VVPLYISISQRL 292 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~--~aa~rg--~i~~~~~d~~~L 292 (392)
+|.+.+.+..+ ..+||+-||||.++..++++-..|+|+.++.++...+ .+..+| ..+|+++-++++
T Consensus 374 ~i~e~~~l~~~---k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 374 TIGEWAGLPAD---KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHhCCCCC---cEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 44555555544 3459999999999999999888999977665332222 344445 367888855543
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.5 Score=39.48 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=75.8
Q ss_pred EcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----------HHHhcCCccEEEe-ccCcC----CCCCCcccEEEE
Q 047630 243 IGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----------FIASRGVVPLYIS-ISQRL----PFFDNTLDIVHS 304 (392)
Q Consensus 243 IGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----------~aa~rg~i~~~~~-d~~~L----pf~d~sFDlV~s 304 (392)
||=|.=+|+..|++. +..++++..|......+ ...+.| +.+..+ |+..+ ....+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEEE
Confidence 555666788888883 55788877776322221 122233 333333 45544 235688999998
Q ss_pred cccccccC----------CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 305 MHVLSNWI----------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 305 ~~~l~~~~----------~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
++.-.... .+.-+..+++.+.++|+++|.+.|+......-+.-+ +.++.++.||..++-.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~-i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWN-IEELAAEAGLVLVRKV 151 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCcccc-HHHHHHhcCCEEEEEe
Confidence 87643210 123456789999999999999999975443322112 5678899999887654
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.34 Score=48.56 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=63.8
Q ss_pred hhCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEec-cCcCCCCCCcccEEEEcc
Q 047630 230 ATKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISI-SQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d-~~~Lpf~d~sFDlV~s~~ 306 (392)
.+.+++++ +=+|+| .|..+..+++ .+.+|++ +|.+....+.+.+-|.-.++.+. .....--.+.||+|+..-
T Consensus 163 ~~~pG~~V---~I~G~GGlGh~avQ~Aka~ga~Via--~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 163 NVKPGKWV---AVVGAGGLGHMAVQYAKAMGAEVIA--ITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCCCEE---EEECCcHHHHHHHHHHHHcCCeEEE--EeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 35566666 555555 5678999998 7999999 55555677777777754444432 112221123499998765
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
. .+ .+....+.||+||.+++.-..
T Consensus 238 ~-~~---------~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G-PA---------TLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C-hh---------hHHHHHHHHhcCCEEEEECCC
Confidence 5 22 578888999999999887654
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.11 Score=44.55 Aligned_cols=33 Identities=6% Similarity=0.201 Sum_probs=24.7
Q ss_pred EEEEcCCcchHHHHHHHcCCE--EEEEecCCCchhHH
Q 047630 240 GLDIGGGVATFAVRMMERNIT--IVTTSMNLNGPFNN 274 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~--vvg~~iD~~a~~~~ 274 (392)
+||+|||.|.++..+++.+.. +++ ++++....+
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~--~E~~~~~~~ 36 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIA--FEPLPDAYE 36 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEE--EecCHHHHH
Confidence 599999999999999987654 777 555434433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.88 E-value=1 Score=44.91 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=85.0
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCC-ccEEEeccCcCCC---CCCcccEEEEcccccccC--
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV-VPLYISISQRLPF---FDNTLDIVHSMHVLSNWI-- 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~-i~~~~~d~~~Lpf---~d~sFDlV~s~~~l~~~~-- 312 (392)
.++|+=||.|.+..-+.+.|.+++. .+|++....+....+.. ..+...|...+.. ....+|+++....-..+.
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~-a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~a 83 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVF-ANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIA 83 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEE-EEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhhc
Confidence 3599999999999999999987654 24443333332222221 3455555554322 111789999865443321
Q ss_pred --------CchhHHHHHHHHHHcccCCcEEEEEeeccc---ccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Ccccce
Q 047630 313 --------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCV---GAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREM 379 (392)
Q Consensus 313 --------~~~~l~~~L~el~RvLKPGG~lii~~~~~~---~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~ 379 (392)
++..+-.-+.++...++| -.|++.....- .....+.+.+.|++.||. +.|.+....+-| .....+
T Consensus 84 G~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~-~~~~ilna~dyGvPQ~ReRv 161 (328)
T COG0270 84 GKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG-VEFNILNAADYGVPQSRERV 161 (328)
T ss_pred CcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc-chHheeeHHhcCCCCCccEE
Confidence 112222345566667788 66666654322 233567799999999999 777777655554 345566
Q ss_pred eeEEE
Q 047630 380 YLSAL 384 (392)
Q Consensus 380 ylsai 384 (392)
|+.+.
T Consensus 162 fiig~ 166 (328)
T COG0270 162 FIVGF 166 (328)
T ss_pred EEEEe
Confidence 66543
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.17 Score=50.63 Aligned_cols=115 Identities=17% Similarity=0.090 Sum_probs=61.2
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCE---EEEEecCCCchhHH----HHHhcCC---ccEEEec--cCc
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNIT---IVTTSMNLNGPFNN----FIASRGV---VPLYISI--SQR 291 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~---vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d--~~~ 291 (392)
.++++....++-..+.+||+|.|.|.-+.++-+.-++ ++. +.. .+... .++++-. ..+...+ ..+
T Consensus 101 sL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~i--le~-sp~lrkV~~tl~~nv~t~~td~r~s~vt~dR 177 (484)
T COG5459 101 SLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVI--LEA-SPALRKVGDTLAENVSTEKTDWRASDVTEDR 177 (484)
T ss_pred HHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhh--hcc-CHHHHHHHHHHHhhcccccCCCCCCccchhc
Confidence 3444443344434445599999999877666553222 222 222 22221 1122110 1222222 123
Q ss_pred CCCC-CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 292 LPFF-DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 292 Lpf~-d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
++++ ...|++|+...-+-+...+..+...++.+...+.|||.|+|.+...
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 4442 3356666665555444444445558899999999999999998543
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.18 Score=42.17 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=22.6
Q ss_pred EEEcCCcchHHHHHHHcCCEEEEEe
Q 047630 241 LDIGGGVATFAVRMMERNITIVTTS 265 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~g~~vvg~~ 265 (392)
.|||||.|.+..-|.+.|....|+|
T Consensus 63 VDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 63 VDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred EEccCCchHHHHHHHhCCCCccccc
Confidence 8999999999999999999888843
|
; GO: 0008168 methyltransferase activity |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.1 Score=43.01 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=55.9
Q ss_pred EEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCC-------ccEEEe-----ccCcCCCCCCc-ccEEEE
Q 047630 239 IGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGV-------VPLYIS-----ISQRLPFFDNT-LDIVHS 304 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~-------i~~~~~-----d~~~Lpf~d~s-FDlV~s 304 (392)
.||++|.|+|..+..++. .+..++.+|.-............+. ..+.+. ......+.... ||+|++
T Consensus 89 ~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlila 168 (248)
T KOG2793|consen 89 NVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILA 168 (248)
T ss_pred eEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEE
Confidence 459999999988887777 5677766443221111122211110 122222 11111122222 999999
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+.++..-...+ .++.-++..|-.+|.+++.....
T Consensus 169 sDvvy~~~~~e---~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 169 SDVVYEEESFE---GLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred eeeeecCCcch---hHHHHHHHHHhcCCeEEEEEecc
Confidence 99986653334 46777777888888665554443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.5 Score=46.02 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=49.5
Q ss_pred cEEEeccCcC--CCCCCcccEEEEcccccc----------cCCc---hhHHHHHHHHHHcccCCcEEEEEeecccccchH
Q 047630 283 PLYISISQRL--PFFDNTLDIVHSMHVLSN----------WIPT---TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLE 347 (392)
Q Consensus 283 ~~~~~d~~~L--pf~d~sFDlV~s~~~l~~----------~~~~---~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~ 347 (392)
.++++|+..+ .+++++||+|++.-.+.. +... .-++.++.++.|+|||||.+++.... ..+
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~---~~~- 85 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST---ENM- 85 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc---hhh-
Confidence 4666775553 456889999999744311 0000 12357899999999999999885321 122
Q ss_pred HHHHHHHHHcCCeEEEEEEeec
Q 047630 348 DVYVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 348 ~~l~~ll~~aGf~~i~w~~~~k 369 (392)
. +..++.+.||....+-+..+
T Consensus 86 ~-~~~~~~~~~f~~~~~iiW~k 106 (284)
T PRK11524 86 P-FIDLYCRKLFTIKSRIVWSY 106 (284)
T ss_pred h-HHHHHHhcCcceEEEEEEEe
Confidence 1 34455667886544433333
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.6 Score=42.59 Aligned_cols=99 Identities=7% Similarity=0.093 Sum_probs=50.9
Q ss_pred cEEEEEcCCcchH-HHHHHHc---CCEEEEEecCCCchhHH-HHHh-c----CCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 238 RIGLDIGGGVATF-AVRMMER---NITIVTTSMNLNGPFNN-FIAS-R----GVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 238 r~VLDIGCGtG~~-a~~La~~---g~~vvg~~iD~~a~~~~-~aa~-r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
+.|+=||+|.=-+ +..|++. +..++++|+|..+.... ...+ . ..+.++.+|....+..-..||+|+....
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4569999997554 4445542 45677766655222221 1112 1 2368888888777655568999987654
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.. .+.+..++++..+.+.++||..+++..
T Consensus 202 Vg--~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 202 VG--MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -S------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred cc--cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 42 233455689999999999999998885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.3 Score=38.80 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=52.5
Q ss_pred ccEEEeccCcCCC--CCCcccEEEEcccccccCC------chhHHHHHHHHHHcccCCcEEEEEeecccccch--HHHHH
Q 047630 282 VPLYISISQRLPF--FDNTLDIVHSMHVLSNWIP------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL--EDVYV 351 (392)
Q Consensus 282 i~~~~~d~~~Lpf--~d~sFDlV~s~~~l~~~~~------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l--~~~l~ 351 (392)
+.++..+=+++.- +++.+|+|+.+...-.-.| .+.....++.+.+.|+|||++.+..+....+-. .+.+.
T Consensus 28 v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~ 107 (140)
T PF06962_consen 28 VTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVE 107 (140)
T ss_dssp EEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHH
T ss_pred EEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHH
Confidence 6667665444432 2358999999866543222 334457899999999999999999887654322 22233
Q ss_pred HH---HHHcCCeEEEEEEeecc
Q 047630 352 PL---IESVGFNKLKWVVGRKL 370 (392)
Q Consensus 352 ~l---l~~aGf~~i~w~~~~k~ 370 (392)
++ +..-.|.++++....+.
T Consensus 108 ~~~~~L~~~~~~V~~~~~~N~~ 129 (140)
T PF06962_consen 108 EFLASLDQKEFNVLKYQFINQK 129 (140)
T ss_dssp HHHHTS-TTTEEEEEEEESS-S
T ss_pred HHHHhCCcceEEEEEEEccCCC
Confidence 34 44456888888877653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.9 Score=41.83 Aligned_cols=142 Identities=13% Similarity=0.239 Sum_probs=78.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC---CCCCcccEEEEccccccc----
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP---FFDNTLDIVHSMHVLSNW---- 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp---f~d~sFDlV~s~~~l~~~---- 311 (392)
+++|+=||.|.+..-|.+.|.+++. .+|++....+....+-. ....+|+..+. ++. .+|+++....-..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~-a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVW-AVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEE-EEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEE-EeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEeccc
Confidence 3599999999999999999976543 24443333332222212 66777777664 343 59999976443322
Q ss_pred -----CCch-hHHHHHHHHHHcccCCcEEEEEeecc---c-ccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Ccccce
Q 047630 312 -----IPTT-LLHFLMFDIYRVLRPGGLFWLDHFFC---V-GAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREM 379 (392)
Q Consensus 312 -----~~~~-~l~~~L~el~RvLKPGG~lii~~~~~---~-~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~ 379 (392)
.++. .+-.-+-++.+.++|. +|++..... . .....+.+.+.+++.||. +.|.+....+.| .....+
T Consensus 79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk-~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~-v~~~vlna~~yGvPQ~R~R~ 156 (335)
T PF00145_consen 79 KRKGFDDPRNSLFFEFLRIVKELKPK-YFLLENVPGLLSSKNGEVFKEILEELEELGYN-VQWRVLNAADYGVPQNRERV 156 (335)
T ss_dssp THHCCCCHTTSHHHHHHHHHHHHS-S-EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEE-EEEEEEEGGGGTSSBE-EEE
T ss_pred cccccccccchhhHHHHHHHhhccce-EEEecccceeecccccccccccccccccccee-ehhccccHhhCCCCCceeeE
Confidence 1111 1222334444556784 455565432 1 223356688889999986 568877766664 344556
Q ss_pred eeEEEE
Q 047630 380 YLSALL 385 (392)
Q Consensus 380 ylsai~ 385 (392)
|+.++.
T Consensus 157 fivg~r 162 (335)
T PF00145_consen 157 FIVGIR 162 (335)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 664433
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.2 Score=44.99 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=76.9
Q ss_pred cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh--------cC-----CccEEEeccCcC-CCCCCcc
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS--------RG-----VVPLYISISQRL-PFFDNTL 299 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~--------rg-----~i~~~~~d~~~L-pf~d~sF 299 (392)
..+.||-+|.|.|.-+..+.+.. -+++-+|+|+ .+.+.+.+ .| .+.++..|+..+ .-..+.|
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP--~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDP--RMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCH--HHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 44667999999999999999842 3566655554 44432221 11 145566664432 3345689
Q ss_pred cEEEEcccccc--cCCchhHHHHHHHHHHcccCCcEEEEEee--cccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 300 DIVHSMHVLSN--WIPTTLLHFLMFDIYRVLRPGGLFWLDHF--FCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 300 DlV~s~~~l~~--~~~~~~l~~~L~el~RvLKPGG~lii~~~--~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
|.|+.-..=-. ...+---.++..-+.|.|+++|.+++..- +...+-.- .+...++++||...-..+.-
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw-~i~aTik~AG~~~~Pyhv~V 438 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFW-RIDATIKSAGYRVWPYHVHV 438 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceee-eehhHHHhCcceeeeeEEec
Confidence 99986421000 00001123567788899999999988752 11111111 14557899999887766543
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=90.02 E-value=7 Score=38.67 Aligned_cols=142 Identities=14% Similarity=0.166 Sum_probs=77.8
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC-CCcccEEEEcccccccC------
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF-DNTLDIVHSMHVLSNWI------ 312 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~------ 312 (392)
|+|+-||.|.+..-+.+.|.+++. .+|++....+....+---.++.+|+..+... -..+|+++....-..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~-a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~ 79 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVF-ASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRK 79 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEE-EEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcccC
Confidence 489999999999999999988654 2344223333222221113455676665421 12489998764332221
Q ss_pred -CchhHHHHHHHHHHcc---cCCcEEEEEeecc----cccchHHHHHHHHHHcCCeEEEEEEeeccCCC--CcccceeeE
Q 047630 313 -PTTLLHFLMFDIYRVL---RPGGLFWLDHFFC----VGAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREMYLS 382 (392)
Q Consensus 313 -~~~~l~~~L~el~RvL---KPGG~lii~~~~~----~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~yls 382 (392)
..+....++.++.|++ +|. .+++..... ......+.+...+++.||.. .|.+....+.| .....+|+.
T Consensus 80 ~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v-~~~~l~a~dyGvPQ~R~R~f~i 157 (315)
T TIGR00675 80 GFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKV-YYKVLNAKDFGVPQNRERIYIV 157 (315)
T ss_pred CCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEE-EEEEEcHHHCCCCCCccEEEEE
Confidence 0111223455555544 664 445554321 12233455788889999965 56666655554 345566664
Q ss_pred EE
Q 047630 383 AL 384 (392)
Q Consensus 383 ai 384 (392)
++
T Consensus 158 a~ 159 (315)
T TIGR00675 158 GF 159 (315)
T ss_pred EE
Confidence 43
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.9 Score=41.73 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=56.0
Q ss_pred hCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC------CCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL------PFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L------pf~d~sFDlV 302 (392)
+.++.++ |..|+| .|..+..+++ .|..+++++ .+....+.+.+.|. ..+....+.. ....+.+|+|
T Consensus 163 ~~~~~~v---li~g~g~vG~~~~~la~~~G~~V~~~~--~s~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 163 VKPGETV---LVIGLGGLGLNAVQIAKAMGAAVIAVD--IKEEKLELAKELGA-DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCEE---EEECCcHHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHHhCC-CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 4455555 777876 4777777777 688877743 33444455555553 3333321111 1234568988
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+..... ...+.++.+.|+++|.++...
T Consensus 237 id~~g~---------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 FDFVGT---------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EECCCC---------HHHHHHHHHHhhcCCEEEEEC
Confidence 754321 136788999999999997653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.88 E-value=17 Score=34.33 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=82.4
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCE--EEEEecCCCchhHH--HHHhcCC---ccEEEeccCcCCC-C
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNIT--IVTTSMNLNGPFNN--FIASRGV---VPLYISISQRLPF-F 295 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~--vvg~~iD~~a~~~~--~aa~rg~---i~~~~~d~~~Lpf-~ 295 (392)
.+..+..+.+.+.. +.||||--|++..+|.+.+.. +++.++..++-.++ ...+.++ +....+|... ++ .
T Consensus 6 RL~~va~~V~~~~~--iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~ 82 (226)
T COG2384 6 RLTTVANLVKQGAR--IADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLEL 82 (226)
T ss_pred HHHHHHHHHHcCCc--eeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCc
Confidence 34445544433221 499999999999999997654 55544444222221 3334444 3444555422 23 3
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCc
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPE 375 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~ 375 (392)
+..+|+|+....-- ..+..+|.+-.+.|+-=-+|++. +... ...+++++...+|..+.-.... +
T Consensus 83 ~d~~d~ivIAGMGG-----~lI~~ILee~~~~l~~~~rlILQ----Pn~~-~~~LR~~L~~~~~~I~~E~ile------E 146 (226)
T COG2384 83 EDEIDVIVIAGMGG-----TLIREILEEGKEKLKGVERLILQ----PNIH-TYELREWLSANSYEIKAETILE------E 146 (226)
T ss_pred cCCcCEEEEeCCcH-----HHHHHHHHHhhhhhcCcceEEEC----CCCC-HHHHHHHHHhCCceeeeeeeec------c
Confidence 44789888765321 23445677777766643344443 2222 3458999999999887766553 2
Q ss_pred ccceeeEEEEEc
Q 047630 376 LREMYLSALLEK 387 (392)
Q Consensus 376 ~~e~ylsai~~K 387 (392)
.+..|-..+.+|
T Consensus 147 ~~kiYEIlv~e~ 158 (226)
T COG2384 147 DGKIYEILVVEK 158 (226)
T ss_pred cCeEEEEEEEec
Confidence 344554455555
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.6 Score=44.00 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=74.1
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCC------EEEEEecCCCchhHH---HHHhcC-C--ccEEEeccCcC----
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNI------TIVTTSMNLNGPFNN---FIASRG-V--VPLYISISQRL---- 292 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~------~vvg~~iD~~a~~~~---~aa~rg-~--i~~~~~d~~~L---- 292 (392)
+++.++.+| ||+.+-.|.=++.|.+... .+++-|+|. .... ...++- . +.+...++..+
T Consensus 151 L~v~p~~~V---LDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~--~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 151 LGVKPGDKV---LDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDP--KRLNMLVHQLKRLPSPNLLVTNHDASLFPNIY 225 (375)
T ss_pred cccCCCCee---eeeccCCCccHHHHHHHHhcCCCCCeeEecccCH--HHHHHHHHHHhccCCcceeeecccceeccccc
Confidence 456777777 9999999998888877322 566655443 2222 111221 1 11111122211
Q ss_pred -----CCCCCcccEEEEcccc------cc--------cCCc------hhHHHHHHHHHHcccCCcEEEEEeecccccchH
Q 047630 293 -----PFFDNTLDIVHSMHVL------SN--------WIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLE 347 (392)
Q Consensus 293 -----pf~d~sFDlV~s~~~l------~~--------~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~ 347 (392)
+.....||-|++--.- .+ |... .-.-.+|..-.|.||+||.++.+..--...+-+
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE 305 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE 305 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhH
Confidence 2234568988863111 00 1110 112357888899999999999997544333445
Q ss_pred HHHHHHHHHcCCeEEEEEEe
Q 047630 348 DVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 348 ~~l~~ll~~aGf~~i~w~~~ 367 (392)
....+++++.| ..+.|..+
T Consensus 306 aVV~~~L~~~~-~~~~lv~~ 324 (375)
T KOG2198|consen 306 AVVQEALQKVG-GAVELVDV 324 (375)
T ss_pred HHHHHHHHHhc-Ccccceee
Confidence 56777777775 44444433
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.48 E-value=4.1 Score=41.91 Aligned_cols=123 Identities=16% Similarity=0.134 Sum_probs=71.5
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHH----cCCEEEEEecCCCchhHH----HHHhcCCccEE--EeccCcCC---C
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMME----RNITIVTTSMNLNGPFNN----FIASRGVVPLY--ISISQRLP---F 294 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~----~g~~vvg~~iD~~a~~~~----~aa~rg~i~~~--~~d~~~Lp---f 294 (392)
++...++.+| ||+.+-.|.=+.++|. .| .+++ .|.+..... .+.+-|.-..+ ..|...+| |
T Consensus 236 aL~Pq~gERI---lDmcAAPGGKTt~IAalMkn~G-~I~A--nD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~ 309 (460)
T KOG1122|consen 236 ALDPQPGERI---LDMCAAPGGKTTHIAALMKNTG-VIFA--NDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF 309 (460)
T ss_pred ecCCCCCCee---cchhcCCCchHHHHHHHHcCCc-eEEe--cccchHHHHHHHHHHHHhCCCceEEEccCccccccccc
Confidence 3445566677 9999999975555554 33 3445 444333332 33444533333 33554443 3
Q ss_pred CCCcccEEEE----cc--cccc------cCC-------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHH
Q 047630 295 FDNTLDIVHS----MH--VLSN------WIP-------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIE 355 (392)
Q Consensus 295 ~d~sFDlV~s----~~--~l~~------~~~-------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~ 355 (392)
+. +||-|+. +. ++.. +.. ..-.+++|..+...+|+||+|+.+..--..++-+..+...++
T Consensus 310 ~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~ 388 (460)
T KOG1122|consen 310 PG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALK 388 (460)
T ss_pred Cc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHH
Confidence 34 8999984 32 2210 000 011346888889999999999999866555555566666777
Q ss_pred Hc
Q 047630 356 SV 357 (392)
Q Consensus 356 ~a 357 (392)
+.
T Consensus 389 K~ 390 (460)
T KOG1122|consen 389 KR 390 (460)
T ss_pred hC
Confidence 73
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.32 Score=43.63 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=36.5
Q ss_pred CCCcccEEEEcccccccC--------CchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 295 FDNTLDIVHSMHVLSNWI--------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~--------~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
..++||.+.|..++.|.. ++..-...+.++.++|||||.|++......
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 356899999998887642 233334688999999999999999876543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.17 E-value=3.9 Score=39.17 Aligned_cols=145 Identities=10% Similarity=0.168 Sum_probs=76.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cCCE--EEEEecCCCchh-HHHHHhcC--CccEEEeccCc---CCCCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RNIT--IVTTSMNLNGPF-NNFIASRG--VVPLYISISQR---LPFFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~--vvg~~iD~~a~~-~~~aa~rg--~i~~~~~d~~~---Lpf~d~sFDl 301 (392)
++++.++ |=+|+++|+.-.+..+ -|++ |+++..+..+-. ...++++. +++++. |+.. .-..-.-.|+
T Consensus 154 ikpGsKV---LYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiE-DArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 154 IKPGSKV---LYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIE-DARHPAKYRMLVGMVDV 229 (317)
T ss_pred ecCCceE---EEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeec-cCCCchheeeeeeeEEE
Confidence 5567777 9999999998877777 3444 445333221111 12444443 345443 3322 1112235666
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec-ccc-----cchHHHHHHHHHHcCCeEEEEEEeeccCCCCc
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF-CVG-----AQLEDVYVPLIESVGFNKLKWVVGRKLDRGPE 375 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~-~~~-----~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~ 375 (392)
|++-- .+++....+.-++.-.||+||.|+|+--. |.+ +.....-.+.+++--++..+....+..+
T Consensus 230 IFaDv-----aqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtLEP~e---- 300 (317)
T KOG1596|consen 230 IFADV-----AQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTLEPFE---- 300 (317)
T ss_pred EeccC-----CCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheecccccc----
Confidence 66532 33455566788899999999999887532 111 1111112233444345555544443332
Q ss_pred ccceeeEEEEEcC
Q 047630 376 LREMYLSALLEKP 388 (392)
Q Consensus 376 ~~e~ylsai~~Kp 388 (392)
.+..++..+++.|
T Consensus 301 rdha~VvG~Y~~~ 313 (317)
T KOG1596|consen 301 RDHACVVGVYRRP 313 (317)
T ss_pred CCceEEEEEEecC
Confidence 3444445566654
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=87.01 E-value=2.3 Score=46.42 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=44.6
Q ss_pred EEEeccCc-CCCCCCcccEEEEc-ccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeE
Q 047630 284 LYISISQR-LPFFDNTLDIVHSM-HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 284 ~~~~d~~~-Lpf~d~sFDlV~s~-~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~ 361 (392)
++.+|+.. ++-.+..||+++.- ++... .+.---+.++.+++|.++|||.|.-.. ....++..+.++||++
T Consensus 151 l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np~~W~~~~~~~l~~~~~~~~~~~t~t-------~a~~vr~~l~~~GF~v 222 (662)
T PRK01747 151 LWFGDANELLPQLDARADAWFLDGFAPAK-NPDMWSPNLFNALARLARPGATLATFT-------SAGFVRRGLQEAGFTV 222 (662)
T ss_pred EEecCHHHHHHhccccccEEEeCCCCCcc-ChhhccHHHHHHHHHHhCCCCEEEEee-------hHHHHHHHHHHcCCee
Confidence 34455433 22223568999864 22211 111112579999999999999996442 2344788999999987
Q ss_pred EE
Q 047630 362 LK 363 (392)
Q Consensus 362 i~ 363 (392)
-+
T Consensus 223 ~~ 224 (662)
T PRK01747 223 RK 224 (662)
T ss_pred ee
Confidence 64
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.94 E-value=7.4 Score=37.42 Aligned_cols=84 Identities=11% Similarity=-0.027 Sum_probs=52.0
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH---HHHhc------------CCccEEEec
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN---FIASR------------GVVPLYISI 288 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~---~aa~r------------g~i~~~~~d 288 (392)
.+.+..++.++.. .+|||+=+|+|..+..++.+|..|++++-+. .... ...++ ..+.++.+|
T Consensus 77 ~l~kAvglk~g~~-p~VLD~TAGlG~Da~~las~G~~V~~vEr~p--~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 77 AVAKAVGIKGDYL-PDVVDATAGLGRDAFVLASVGCRVRMLERNP--VVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHHhCCCCCCC-CEEEECCCCccHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 3444555666553 2459999999999999999999998855332 2222 11111 114555666
Q ss_pred cCcC-CCCCCcccEEEEcccccc
Q 047630 289 SQRL-PFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 289 ~~~L-pf~d~sFDlV~s~~~l~~ 310 (392)
...+ .-...+||+|+.--.+.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 4332 212347999998776655
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=86.87 E-value=3.5 Score=41.51 Aligned_cols=105 Identities=13% Similarity=-0.012 Sum_probs=58.1
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCc-----C-CC-CCCc
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQR-----L-PF-FDNT 298 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~-----L-pf-~d~s 298 (392)
..+.++..+ |.+|||. |..+..+++ .|. .++++ +.+....+.+.+.+...++.....+ + .+ ....
T Consensus 180 ~~~~~g~~V---lV~g~G~vG~~~~~la~~~g~~~vi~~--~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 180 AEVKPGDTV---AVWGCGPVGLFAARSAKLLGAERVIAI--DRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred ccCCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCC
Confidence 334454455 9999988 888888887 565 47664 3434444455555222322211110 1 11 2336
Q ss_pred ccEEEEccccc-------cc-----CCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 299 LDIVHSMHVLS-------NW-----IPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 299 FDlV~s~~~l~-------~~-----~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+|+|+-.-.-. +. .+..+....+.++.+.|+++|.+++..
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 89988743110 00 011111347899999999999997764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.03 E-value=1 Score=42.68 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=61.0
Q ss_pred ccEEEEEcCCcchHHHHHHHc--------CC---EEEEEecCCCchhHHHHHhcCCccEEEeccCcC--------CCCCC
Q 047630 237 IRIGLDIGGGVATFAVRMMER--------NI---TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL--------PFFDN 297 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~--------g~---~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L--------pf~d~ 297 (392)
+++|+|+....|.++..|.++ +. .+++ +|+ .++.- -.| +--+++|+... -|..+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVa--VDL-Q~MaP---I~G-V~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVA--VDL-QPMAP---IEG-VIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEE--Eec-ccCCc---cCc-eEEeecccCCHhHHHHHHHHhCCC
Confidence 555699999999999888772 11 2666 444 22211 122 23344554432 13456
Q ss_pred cccEEEEccccc-----cc---CCchhHHHHHHHHHHcccCCcEEEEEeecccccc
Q 047630 298 TLDIVHSMHVLS-----NW---IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ 345 (392)
Q Consensus 298 sFDlV~s~~~l~-----~~---~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~ 345 (392)
.-|+|+|-.+.. .+ ...+-+...|.-...+|||||.|+---|......
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ts 170 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTS 170 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchH
Confidence 889999976542 21 1123344566777899999999987766554433
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.7 Score=45.21 Aligned_cols=106 Identities=18% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCCCcccEEEEEcCCcch--HHHHHHHcC--CEEEEEecCCCchhHHHHHh--cC----CccEE---EeccCcCCCC-CC
Q 047630 232 KKPGTIRIGLDIGGGVAT--FAVRMMERN--ITIVTTSMNLNGPFNNFIAS--RG----VVPLY---ISISQRLPFF-DN 297 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~--~a~~La~~g--~~vvg~~iD~~a~~~~~aa~--rg----~i~~~---~~d~~~Lpf~-d~ 297 (392)
.+.-+...++|+|.|.|. .++....++ -.++. +|.+..+...... ++ .-.++ +.--..+|.. .+
T Consensus 196 ~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~--Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~ 273 (491)
T KOG2539|consen 196 SPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSL--VDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKN 273 (491)
T ss_pred CcccChHHHHHHHhhcccchhhhhhhcccccceeEe--eccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCccc
Confidence 344444556899888765 444444443 23333 5664455442221 11 01111 1123345654 44
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHH-cccCCcEEEEEee
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYR-VLRPGGLFWLDHF 339 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~R-vLKPGG~lii~~~ 339 (392)
.||+|++.+.+++.........+.++..| ..++||.+++.+-
T Consensus 274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 59999999999998777766666666654 5688888877764
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.50 E-value=2.9 Score=44.14 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=69.2
Q ss_pred ccEEEEEcCCcchHHHHHH------HcCCEEEEEecCCCchhHHHHHh----cCCccEEEeccCcCCCCCCcccEEEEcc
Q 047630 237 IRIGLDIGGGVATFAVRMM------ERNITIVTTSMNLNGPFNNFIAS----RGVVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La------~~g~~vvg~~iD~~a~~~~~aa~----rg~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
+.+|+=+|+|.|-+..... .+.+.++++.-++++.......+ .+.+.++..|...++-+..+.|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 5677999999997554332 25677777555554332221111 1347888999999985568899998753
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|..+.+.+--.+-|..+.+.|||+|+.+=..+
T Consensus 448 -LGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 448 -LGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred -hccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 33345555556778999999999999865554
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=84.01 E-value=20 Score=34.46 Aligned_cols=101 Identities=17% Similarity=0.059 Sum_probs=60.6
Q ss_pred ccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcC-----CccEEEeccC-----cC---CCCCCcc
Q 047630 237 IRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRG-----VVPLYISISQ-----RL---PFFDNTL 299 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg-----~i~~~~~d~~-----~L---pf~d~sF 299 (392)
++.|+.+|||-=.-+.++.... .+..+++|. +...+ .+.+.+ ...++..|.. .+ .|..+.-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~-~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPD-GTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCC-CCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 4557999999988887775432 234445776 33332 222211 2334444432 11 1222223
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
-++++-.++.+ .+++....+++.+.+...||+.++++...
T Consensus 160 tl~i~EGvl~Y-L~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 160 TAWLWEGLLMY-LTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeeeecchhhc-CCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 35555565544 67788889999999998899999888643
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=83.56 E-value=7.9 Score=41.07 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=55.2
Q ss_pred EEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEecc-C----------cCC----------CCC
Q 047630 240 GLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISIS-Q----------RLP----------FFD 296 (392)
Q Consensus 240 VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-~----------~Lp----------f~d 296 (392)
|+=+|+|. |..+...++ .|..|+++| .+....+.+.+-|. .+..-+. + .+. +.+
T Consensus 168 VlViGaG~iGL~Ai~~Ak~lGA~V~a~D--~~~~rle~aeslGA-~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 168 VLVIGAGVAGLAAIGAAGSLGAIVRAFD--TRPEVAEQVESMGA-EFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred EEEECCcHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHcCC-eEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 39999998 556666666 688888844 54455556666563 3331111 1 010 011
Q ss_pred --CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 297 --NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 297 --~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+|+|+..-....- +... .+.+++.+.+||||.++...
T Consensus 245 ~~~gaDVVIetag~pg~-~aP~--lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 245 QAKEVDIIITTALIPGK-PAPK--LITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred ccCCCCEEEECCCCCcc-cCcc--hHHHHHHHhcCCCCEEEEEc
Confidence 358999987654221 1111 23599999999999986543
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.15 E-value=18 Score=35.84 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecccccch
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFCVGAQL 346 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~~~~~l 346 (392)
++.+|..+.++|+|||+|.+..|..-++.+
T Consensus 223 L~~~L~~a~~~L~~gGRl~VIsFHSLEDRi 252 (314)
T COG0275 223 LEEALEAALDLLKPGGRLAVISFHSLEDRI 252 (314)
T ss_pred HHHHHHHHHHhhCCCcEEEEEEecchHHHH
Confidence 556888888999999999999998876666
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.98 E-value=21 Score=34.47 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=54.6
Q ss_pred EEEcCCcchHHHHHHH----cCCEEEEEecCCCchhHHHHH---hc---CC-ccEEEecc----CcCCCCCCcccEEEEc
Q 047630 241 LDIGGGVATFAVRMME----RNITIVTTSMNLNGPFNNFIA---SR---GV-VPLYISIS----QRLPFFDNTLDIVHSM 305 (392)
Q Consensus 241 LDIGCGtG~~a~~La~----~g~~vvg~~iD~~a~~~~~aa---~r---g~-i~~~~~d~----~~Lpf~d~sFDlV~s~ 305 (392)
+|+|.|+..=+..|.+ ++.-...+-+|+++......+ .+ ++ +..++++. ..+| ..++==.++-.
T Consensus 83 veLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl~~flG 161 (321)
T COG4301 83 VELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRLFVFLG 161 (321)
T ss_pred EEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEEEEEec
Confidence 8999999886655544 554444444667565554211 11 21 22334442 2233 11222233334
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+-++.+. ....+|..+..+|+||-+|.+..
T Consensus 162 StlGN~tp~-e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 162 STLGNLTPG-ECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred ccccCCChH-HHHHHHHHHHhcCCCcceEEEec
Confidence 556665444 44679999999999999997664
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.88 E-value=2.7 Score=42.24 Aligned_cols=83 Identities=11% Similarity=0.054 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhH---------HHHHhcCC----ccEEEe
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN---------NFIASRGV----VPLYIS 287 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~---------~~aa~rg~----i~~~~~ 287 (392)
..++........+|.- |+|==.|||.+....+.-|.-|+|+|||...... ++..+.|. +.+..+
T Consensus 196 LSli~AN~Amv~pGdi---vyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~ 272 (421)
T KOG2671|consen 196 LSLIMANQAMVKPGDI---VYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA 272 (421)
T ss_pred HHHHHhhhhccCCCCE---EecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee
Confidence 4455555554555443 5999999999999999999999998888632221 11222231 456677
Q ss_pred ccCcCCCC-CCcccEEEEcc
Q 047630 288 ISQRLPFF-DNTLDIVHSMH 306 (392)
Q Consensus 288 d~~~Lpf~-d~sFDlV~s~~ 306 (392)
|...-|.. ...||.|+|--
T Consensus 273 D~sn~~~rsn~~fDaIvcDP 292 (421)
T KOG2671|consen 273 DFSNPPLRSNLKFDAIVCDP 292 (421)
T ss_pred cccCcchhhcceeeEEEeCC
Confidence 76665553 45799999953
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.78 E-value=1.8 Score=41.19 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=43.7
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH--------hcC--------CccEEEe
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA--------SRG--------VVPLYIS 287 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa--------~rg--------~i~~~~~ 287 (392)
.+.+..++.++.. .+|||.=+|-|.-+.-++..|.+|+++. -+ +....+. ... .++++.+
T Consensus 64 ~l~kA~Glk~~~~-~~VLDaTaGLG~Da~vlA~~G~~V~~lE--rs-pvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVGLKPGMR-PSVLDATAGLGRDAFVLASLGCKVTGLE--RS-PVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT-BTTB----EEETT-TTSHHHHHHHHHT--EEEEE-----HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhCCCCCCC-CEEEECCCcchHHHHHHHccCCeEEEEE--CC-HHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4444555665432 2459999999999999998899999844 42 2322111 111 1677788
Q ss_pred ccCc-CCCCCCcccEEEEcccccc
Q 047630 288 ISQR-LPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 288 d~~~-Lpf~d~sFDlV~s~~~l~~ 310 (392)
|... +..++++||+|+.--.+.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 7554 5566899999999776654
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.11 E-value=8.5 Score=35.76 Aligned_cols=99 Identities=7% Similarity=0.045 Sum_probs=61.0
Q ss_pred ccEEEEEcCCcchHHHHHHH----cC--CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC-------CCCcccEEE
Q 047630 237 IRIGLDIGGGVATFAVRMME----RN--ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF-------FDNTLDIVH 303 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~----~g--~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf-------~d~sFDlV~ 303 (392)
.+.|+++|.-.|.-+..++. -| ++|+++|+|+ -+....+.+...+.|+.++..+... ..+.--+.+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi-~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDI-KPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEeccc-CcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 35569999988875555554 45 8899988888 3333344433336788887554321 112223344
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|..+-|+. +...+-|+-..+.|..|-++++.+-
T Consensus 149 ilDsdHs~---~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 149 ILDSDHSM---EHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred EecCCchH---HHHHHHHHHhhhHhhcCceEEEecc
Confidence 44555443 4444566777889999999987763
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=80.99 E-value=65 Score=33.90 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=65.2
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCC-----------------CCc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFF-----------------DNT 298 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~-----------------d~s 298 (392)
++|+=||.|.+..-+...|.++++ .+|++....+....+ .....+.+|+..+... -..
T Consensus 91 ~iDLFsGiGGl~lGfe~aG~~~v~-a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p~ 169 (467)
T PRK10458 91 FIDLFAGIGGIRRGFEAIGGQCVF-TSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIPD 169 (467)
T ss_pred EEEeCcCccHHHHHHHHcCCEEEE-EEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCCC
Confidence 499999999999999888887653 344422332221111 1123344555544311 124
Q ss_pred ccEEEEcccccccCC----------------chhHHHHHHHHHHcc---cCCcEEEEEeecc----cccchHHHHHHHHH
Q 047630 299 LDIVHSMHVLSNWIP----------------TTLLHFLMFDIYRVL---RPGGLFWLDHFFC----VGAQLEDVYVPLIE 355 (392)
Q Consensus 299 FDlV~s~~~l~~~~~----------------~~~l~~~L~el~RvL---KPGG~lii~~~~~----~~~~l~~~l~~ll~ 355 (392)
+|+++....-..+.. .+....++.++.|++ +|. +|++..... ......+.+.+.++
T Consensus 170 ~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk-~fvlENV~gl~s~~~g~~f~~i~~~L~ 248 (467)
T PRK10458 170 HDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA-IFVLENVKNLKSHDKGKTFRIIMQTLD 248 (467)
T ss_pred CCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC-EEEEeCcHhhhcccccHHHHHHHHHHH
Confidence 798887543332210 011122555555554 554 445554321 12234556788889
Q ss_pred HcCCeEE
Q 047630 356 SVGFNKL 362 (392)
Q Consensus 356 ~aGf~~i 362 (392)
+.||.+.
T Consensus 249 ~lGY~v~ 255 (467)
T PRK10458 249 ELGYDVA 255 (467)
T ss_pred HcCCeEE
Confidence 9999976
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.94 E-value=6.4 Score=38.79 Aligned_cols=88 Identities=13% Similarity=0.039 Sum_probs=50.3
Q ss_pred EEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEe---ccCcCCCCCCcccEEEEcccccccCCc
Q 047630 241 LDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYIS---ISQRLPFFDNTLDIVHSMHVLSNWIPT 314 (392)
Q Consensus 241 LDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~---d~~~Lpf~d~sFDlV~s~~~l~~~~~~ 314 (392)
|=+|+|. |..+..+++ .|. .+++++ .+....+.+.+.|...++.. +..++....+.+|+|+-.-.-
T Consensus 174 lV~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~------ 245 (343)
T PRK09880 174 FVSGVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH------ 245 (343)
T ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC------
Confidence 7678753 566667776 577 576644 33445555556663222211 111111112358988754321
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEee
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
...+....+.|++||.+++...
T Consensus 246 ---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 246 ---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---HHHHHHHHHHhhcCCEEEEEcc
Confidence 1356788899999999987654
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=80.75 E-value=1 Score=38.57 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=43.4
Q ss_pred cEEEeccCc-CCCCCCcccEEEEcccccccCCch-hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe
Q 047630 283 PLYISISQR-LPFFDNTLDIVHSMHVLSNWIPTT-LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN 360 (392)
Q Consensus 283 ~~~~~d~~~-Lpf~d~sFDlV~s~~~l~~~~~~~-~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~ 360 (392)
.+..+|+.. ++--+..||+|+.-. +..-..++ --..++++++|.++|||.+...... ..++..+.++||.
T Consensus 34 ~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~aGF~ 105 (124)
T PF05430_consen 34 TLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYSSA-------GAVRRALQQAGFE 105 (124)
T ss_dssp EEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B-------HHHHHHHHHCTEE
T ss_pred EEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech-------HHHHHHHHHcCCE
Confidence 455566533 222236789888652 11111111 1246999999999999988544321 2377899999999
Q ss_pred EEEEE
Q 047630 361 KLKWV 365 (392)
Q Consensus 361 ~i~w~ 365 (392)
+-+-.
T Consensus 106 v~~~~ 110 (124)
T PF05430_consen 106 VEKVP 110 (124)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 76544
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=80.66 E-value=46 Score=35.15 Aligned_cols=112 Identities=17% Similarity=0.150 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH----cC--CEEEEEecCCCchhHH----HHHhcCC---ccEEEe
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME----RN--ITIVTTSMNLNGPFNN----FIASRGV---VPLYIS 287 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~----~g--~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~ 287 (392)
+..++.+++...+.. +|+|-.||+|.+.....+ .. ...+| .+++..... .+.-+|. +....+
T Consensus 174 v~~liv~~l~~~~~~---~i~DpacGsgg~l~~a~~~~~~~~~~~~~yG--qE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 174 VSELIVELLDPEPRN---SIYDPACGSGGMLLQAAKYLKRHQDEIFIYG--QEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred HHHHHHHHcCCCCCC---eecCCCCchhHHHHHHHHHHHhhccceeEEE--EeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 555666665443333 459999999987665554 22 44566 443222222 2222332 233344
Q ss_pred ccCcCCC-----CCCcccEEEEccccc--ccCC--------------------chhHHHHHHHHHHcccCCcEEEEE
Q 047630 288 ISQRLPF-----FDNTLDIVHSMHVLS--NWIP--------------------TTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 288 d~~~Lpf-----~d~sFDlV~s~~~l~--~~~~--------------------~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+...-|. ..+.||.|+++..+. .|.. ...-..+++.+.+.|+|||+..|.
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 4333232 336799999985553 2211 111257899999999999866444
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.09 E-value=4 Score=33.94 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=55.0
Q ss_pred CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----C-CCCCcccEEEEcccccccCCchhHH
Q 047630 246 GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----P-FFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 246 GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----p-f~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
|.|..+..+++ .|.++++++ .+....+.+.+.|...++.....++ . ...+.+|+|+-.-.- .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~--~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---------~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATD--RSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---------G 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE--SSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---------H
T ss_pred ChHHHHHHHHHHcCCEEEEEE--CCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc---------H
Confidence 46888888887 688888855 4345556666667322322222211 1 233579999864331 2
Q ss_pred HHHHHHHHcccCCcEEEEEeecc
Q 047630 319 FLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~~~ 341 (392)
..+++...+|++||.+++.....
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 47899999999999998887665
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 3e-08
Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 18/170 (10%)
Query: 229 LATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLY 285
GT +DIG G ++ + ++ +I + S ++N IA +
Sbjct: 39 RFGITAGTC---IDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDR- 94
Query: 286 ISISQ----RLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341
I I Q +P DN D++ S + W + +IYR+L+ GG +
Sbjct: 95 IQIVQGDVHNIPIEDNYADLIVSRGSVFFW--EDVATAFR-EIYRILKSGGKT----YIG 147
Query: 342 VGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKPFLD 391
G +++ + + W + + E E + + L E
Sbjct: 148 GGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS 197
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-07
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 229 LATKKPGTIRIGLDIG---GGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV---V 282
+ + I DIG GG + +T + FN G+ V
Sbjct: 41 IDNLTEKS-LI-ADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRV 98
Query: 283 PLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334
+ LPF + LD++ S + N L+ + + L+ GG
Sbjct: 99 TGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLN----EWRKYLKKGGYL 146
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 241 LDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLYISISQ----RLP 293
LD G G + + + S NF ++IS+ +LP
Sbjct: 28 LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN---FKLNISKGDIRKLP 84
Query: 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337
F D ++ V+S + + + + +I RVL+PGGL ++
Sbjct: 85 FKDESMSFVYSYGTIFHMRKNDVKEAID-EIKRVLKPGGLACIN 127
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIV----TTSMNLNGPFNNFIA-SRGVVPLYI 286
K P + LD+GGG +++ + ER +V + M L +A +GV +
Sbjct: 53 KNPCRV---LDLGGGTGKWSLFLQERGFEVVLVDPSKEM-LE------VAREKGVKNVVE 102
Query: 287 SISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL 346
+ ++ LPF + V ++ + +++ F +I RVL P GL L
Sbjct: 103 AKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFS--EIRRVLVPDGLLIAT-VDNFYTFL 159
Query: 347 EDVY 350
+ +
Sbjct: 160 QQMI 163
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 5e-07
Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 14/163 (8%)
Query: 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPF----NNFIASRGV--V 282
PG ++ L+ G G+ V + + N TS++++ G+ V
Sbjct: 32 DTVYPPGA-KV-LEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNV 89
Query: 283 PLYISISQRLPFFDNTLDIVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341
+ LPF D++ D + VL + P L + +VL+PGG +
Sbjct: 90 KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALK----SLKKVLKPGGTITVIEGDH 145
Query: 342 VGAQLEDVYVPLIESV-GFNKLKWVVGRKLDRGPELREMYLSA 383
IE+ +++ + G ++ + +
Sbjct: 146 GSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQES 188
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 7e-07
Identities = 33/173 (19%), Positives = 54/173 (31%), Gaps = 36/173 (20%)
Query: 233 KPGTIRIGLDIG---GGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISIS 289
+ + LD+G GG A F VR +I + + N + G+ I++
Sbjct: 81 QRQA-KG-LDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADN-ITVK 137
Query: 290 Q----RLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF----------- 334
+P DN+ D + S + P + + RVL+P G+
Sbjct: 138 YGSFLEIPCEDNSYDFIWSQDAFLH-SPD--KLKVFQECARVLKPRGVMAITDPMKEDGI 194
Query: 335 -------WLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMY 380
LD +Y L + G L+ R L Y
Sbjct: 195 DKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF-----SRPDSLVHHY 242
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 9e-07
Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 49/181 (27%)
Query: 233 KPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLYISIS 289
+ G R+ LD+G G+ AVR+ +T ++ S N + G+ ++ S
Sbjct: 60 RSGD-RV-LDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANR-VTFS 116
Query: 290 Q----RLPFFDNTLDIVHSMHVLSNWIPTTLLHF-----LMFDIYRVLRPGGLF------ 334
LPF D + D V ++ +L H + ++ RVLRPGG
Sbjct: 117 YADAMDLPFEDASFDAVWALE--------SLHHMPDRGRALREMARVLRPGGTVAIADFV 168
Query: 335 ----------WLDHFFCVGAQLEDV-----YVPLIESVGFNKLKWVVGRKLDRGPELREM 379
F G + + Y + VV +D + R
Sbjct: 169 LLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAEL-----VVTSTVDISAQARPS 223
Query: 380 Y 380
Sbjct: 224 L 224
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 9e-07
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 29/156 (18%)
Query: 227 EVLATKKPGTIRIGLDIG---GGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV-- 281
+ +I DIG GG F ++ IT + + FN
Sbjct: 39 SFINELTDDA-KI-ADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCAD 96
Query: 282 -VPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF------ 334
V LPF + LD++ S + N ++ + + L+ GG
Sbjct: 97 RVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMN----EWSKYLKKGGFIAVSEAS 152
Query: 335 WL---------DHFFCVGAQLEDV--YVPLIESVGF 359
W D + ++ + + +E G+
Sbjct: 153 WFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGY 188
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 21/116 (18%)
Query: 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIV----TTSMNLNGPFNNFIASRGVVPLYIS 287
KK G + LD+ GV F+ + + +V + M + A +
Sbjct: 37 KKRGKV---LDLACGVGGFSFLLEDYGFEVVGVDISEDM-IR------KAREYAKSRESN 86
Query: 288 IS------QRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337
+ ++L F D T D V + + ++ P L ++ RVL+P G F +
Sbjct: 87 VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFK-EVRRVLKPSGKFIMY 141
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 5e-06
Identities = 22/173 (12%), Positives = 48/173 (27%), Gaps = 18/173 (10%)
Query: 227 EVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVP 283
+A+ LD G G+ ++ + ++ ++ +A V
Sbjct: 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGK 143
Query: 284 LYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG 343
++ + NT D++ + F + L P G + G
Sbjct: 144 FILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFK-HCQQALTPNGYIFFKENCSTG 202
Query: 344 AQL------------EDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSAL 384
+ + Y L G +K + +L + + AL
Sbjct: 203 DRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPT--DLFPLKMYAL 253
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-06
Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 27/142 (19%)
Query: 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR 291
++ + D G G A + +L +
Sbjct: 63 RQRPASLVVADFGCGDCRLASSIRNPV-----HCFDLASLDPRVTVCDM---------AQ 108
Query: 292 LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL----DHFFCVGAQLE 347
+P D ++D+ L T + FL + RVL+PGGL + F V
Sbjct: 109 VPLEDESVDVAVFCLSLMG---TNIRDFLE-EANRVLKPGGLLKVAEVSSRFEDV----- 159
Query: 348 DVYVPLIESVGFNKLKWVVGRK 369
++ + +GF + +
Sbjct: 160 RTFLRAVTKLGFKIVSKDLTNS 181
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 6e-06
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 241 LDIGGGVATFAVRMMERNITIV--TTSMNLNGPFNNFIASRGV--VPLYISISQRLPFFD 296
L++G G + R+ V + +M L + R + + LPF
Sbjct: 41 LEVGAGTGYWLRRLPYPQKVGVEPSEAM-LA------VGRRRAPEATWVRAWGEALPFPG 93
Query: 297 NTLDIVHSMHVLSNW--IPTTLLHFLMFDIYRVLRPGGLFWLDHF 339
+ D+V L + LL RVLRPGG +
Sbjct: 94 ESFDVVLLFTTLEFVEDVERVLLE-----ARRVLRPGGALVVGVL 133
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-06
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 290 QRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349
+ D++ S + ++ + +I+R L G + F +
Sbjct: 99 SVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIG-FGAGRGWVFGD 157
Query: 350 YVPLIESVGF 359
++ + E VG
Sbjct: 158 FLEVAERVGL 167
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 9e-06
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 290 QRLPFFDNTLDIVHSMHVLSNW-IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348
LPF + + + +++ L P L+ +I RVL+ G + E+
Sbjct: 108 SSLPFENEQFEAIMAINSLEWTEEPLRALN----EIKRVLKSDGYACIAILGPTAKPREN 163
Query: 349 VYVPLIESVGFNKL 362
Y L
Sbjct: 164 SYPRLYGKDVVCNT 177
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 290 QRLPFFDNTLDIVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348
+ LPF D++ DI+ + ++ + ++ RVL+ G F L + + D
Sbjct: 79 ESLPFPDDSFDIITCRYAAHHFSDVRKAVR----EVARVLKQDGRFLLVDHYAPEDPVLD 134
Query: 349 VYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSA 383
+V + +L+ + E + M+ +
Sbjct: 135 EFVNHLN-----RLRDPSHVRESSLSEWQAMFSAN 164
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 32/146 (21%)
Query: 241 LDIGGGVATFAVRMMERNITI-VTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTL 299
++IG G FAV + + I + + M IA + V + ++ LP D +
Sbjct: 52 VEIGVGTGRFAVPLKIK-IGVEPSERM-AE------IARKRGVFVLKGTAENLPLKDESF 103
Query: 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF------------------WLDHFFC 341
D + + L + YR+L+ GG F
Sbjct: 104 DFALMVTTICFV--DDPERALK-EAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFY 160
Query: 342 VGAQL--EDVYVPLIESVGFNKLKWV 365
A+ + + L+ GF + K V
Sbjct: 161 KNARFFSTEELMDLMRKAGFEEFKVV 186
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 14/114 (12%)
Query: 227 EVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIV--TTSMNLNGPFNNFIASRGV- 281
++ A K + LD+ G A + T + FI G
Sbjct: 31 QIAALKGNEEV---LDVATGGGHVANAFAPFVKKVVAFDLTEDILKVA--RAFIEGNGHQ 85
Query: 282 -VPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334
V ++++PF D IV ++ F+ + YRVL+ GG
Sbjct: 86 QVEYVQGDAEQMPFTDERFHIVTCRIAAHHF--PNPASFVS-EAYRVLKKGGQL 136
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 36/159 (22%)
Query: 233 KPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLYISIS 289
+ ++ LDIG G+ + + E+ + + N+ N ++ + +
Sbjct: 54 NENS-KV-LDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDI 111
Query: 290 QRLPFFDNTLDIVHSMHVLSNWIPTTLLHF-----LMFDIYRVLRPGGLFWLDHFFCVGA 344
F +N D+++S + L L Y+ L+P G L +C
Sbjct: 112 LTKEFPENNFDLIYSRDAI------LALSLENKNKLFQKCYKWLKPTGTL-LITDYCATE 164
Query: 345 QLE-------------------DVYVPLIESVGFNKLKW 364
+ + Y ++ + F +
Sbjct: 165 KENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVS 203
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 4e-05
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 25/150 (16%)
Query: 241 LDIGGGVATFAVRMMERNITIV----TTSM------NLNGPFNNFIASRGVVPLYISISQ 290
L++G G A+ ++ R + +M + G + +
Sbjct: 44 LELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-------R 96
Query: 291 RLPFFDNTLDIVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGG---LFWLDHFFCVGAQL 346
+P D ++ V +H+ +L + RVL+PGG W L
Sbjct: 97 AIPLPDESVHGVIVVHLWHLVPDWPKVLA----EAIRVLKPGGALLEGWDQAEASPEWTL 152
Query: 347 EDVYVPLIESVGFNKLKWVVGRKLDRGPEL 376
++ + GF + + ++L E
Sbjct: 153 QERWRAFAAEEGFPVERGLHAKRLKEVEEA 182
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 241 LDIGGGVATFAVRMMERNITIVTTSMN---LNGPFNNFIASRGVVPLYISIS------QR 291
LDIG G ++ + + ++ +N + +
Sbjct: 35 LDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS 94
Query: 292 LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334
L F D++ D L++ ++ +++RVL+PG
Sbjct: 95 LSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYL 137
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 5e-05
Identities = 9/86 (10%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL-DHFFCVGAQLEDVYVPL 353
++D + S + + + + + ++L GG D F +
Sbjct: 103 VPTSIDTIVSTYAF-HHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAA 161
Query: 354 IESVGFNKLKWVVGRKLDRGPELREM 379
+ + R P ++ +
Sbjct: 162 KQRGFHQLANDLQTEYYTRIPVMQTI 187
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-05
Identities = 23/179 (12%), Positives = 49/179 (27%), Gaps = 24/179 (13%)
Query: 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER-----NITIVTTSMNLNGPFNNF 275
+ F ++ V KP I +D G G + +M T + + L
Sbjct: 10 VSFLVNTVWKITKPVHI---VDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL 66
Query: 276 IASRGV-VPLYISISQRLPFFDNTLDIVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGL 333
+ + ++ DI L + P T+L + ++ GG
Sbjct: 67 FRLLPYDSEFLEGDATEIEL-NDKYDIAICHAFLLHMTTPETMLQ----KMIHSVKKGGK 121
Query: 334 F---------WLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSA 383
+ + G + + + F G+ + G ++
Sbjct: 122 IICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSEL 180
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 6e-05
Identities = 27/189 (14%), Positives = 68/189 (35%), Gaps = 30/189 (15%)
Query: 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIV----TTSMNLNGPFNNFIASRG 280
++ ++ + DIG G ++V + + + + + M
Sbjct: 23 VNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQA------VVHP 76
Query: 281 VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGL------- 333
V + ++ L D ++D V S+ + ++ + L ++ R++R G +
Sbjct: 77 QVEWFTGYAENLALPDKSVDGVISILAIHHF--SHLEKSFQ-EMQRIIRDGTIVLLTFDI 133
Query: 334 -----FWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGP---ELREMYLSALL 385
WL +F + ++PL E + + + +L +++ +A
Sbjct: 134 RLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPHDLSDLFAAAAW 193
Query: 386 EKP--FLDA 392
+P +L A
Sbjct: 194 RRPELYLKA 202
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 18/141 (12%), Positives = 36/141 (25%), Gaps = 27/141 (19%)
Query: 203 DLQGVEKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIV 262
G + W + + + D L+ R+ L+ G G A R +
Sbjct: 16 RELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTRV-LEAGCGHGPDAARFGPQAARWA 74
Query: 263 ----TTSM----NLNGPFNNFIASRGVVPLYISISQRLPFFDN-TLDIVHSMHVLSNWIP 313
+ + N P + + LP ++ S ++ I
Sbjct: 75 AYDFSPELLKLARANAPHADVY--------EWNGKGELPAGLGAPFGLIVSRRGPTSVIL 126
Query: 314 TTLLHFLMFDIYRVLRPGGLF 334
+ + P F
Sbjct: 127 ---------RLPELAAPDAHF 138
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 19/101 (18%)
Query: 290 QRLPFFDNTLDIVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGLF----WLDHFFCVGA 344
++P DNT+D + P L ++ RV +P W G
Sbjct: 98 NKIPLPDNTVDFIFMAFTFHELSEPLKFLE----ELKRVAKPFAYLAIIDWKKEERDKGP 153
Query: 345 QLEDVY-----VPLIESVGFNKLKWVVGRKLDRGPELREMY 380
E+VY ++E G VGR ++ G +Y
Sbjct: 154 PPEEVYSEWEVGLILEDAGI-----RVGRVVEVGKYCFGVY 189
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 21/161 (13%)
Query: 241 LDIGGGVATFAVRMMERNITIVTTSMNLNGPF----NNFIASRG--VVPLYISISQRLPF 294
LD G G+ R++ V +++ F ++ G V + Q
Sbjct: 84 LDCGAGIGRITKRLLLPLFREVDM-VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP 142
Query: 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL--------DHFFCVGAQL 346
++ D++ V+ + L FL LRP G+ + V + +
Sbjct: 143 EPDSYDVIWIQWVIGHLTDQHLAEFLR-RCKGSLRPNGIIVIKDNMAQEGVILDDVDSSV 201
Query: 347 ---EDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSAL 384
DV +I S G + L L E+ +Y AL
Sbjct: 202 CRDLDVVRRIICSAGLSLLAEERQENLPD--EIYHVYSFAL 240
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 33/208 (15%), Positives = 70/208 (33%), Gaps = 22/208 (10%)
Query: 187 NRKHTQKGFDDCKDCFDLQGVEKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGG 246
+ ++ FD +D Q R + S+ + I LD+G G
Sbjct: 2 SLSEIKRKFDAVSGKYDEQ----RRKFIPCFDDFYGVSVSIASVDTENPDI---LDLGAG 54
Query: 247 VATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQ----RLPFFDNTLDIV 302
+ +ME+ T ++++ +R L + + + F + D+V
Sbjct: 55 TGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDF-EEKYDMV 113
Query: 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL-DHFFCVGAQLEDVYVPLIESVGFNK 361
S + + + L Y +L+ G+F D A +E++ + + +
Sbjct: 114 VSALSI-HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTI-----WRQ 167
Query: 362 LKWVVGRKLDRGPELREMYLSALLEKPF 389
G + E+ Y + L+K
Sbjct: 168 YVENSGLTEE---EIAAGYERSKLDKDI 192
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 34/142 (23%)
Query: 211 RWTQKKGNGGLDFSIDEV-------LATKKPGTIRIGLDIGGGVATFAVRMMERNITIV- 262
W +G ++ + ++P + LD+G G + +R I V
Sbjct: 23 AWIDAVRHGAIESRRQVTDQAILLAILGRQPERV---LDLGCGEGWLLRALADRGIEAVG 79
Query: 263 ---TTSMNLNGPFNNFIA-------SRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312
++ + + Y +++ D++ + L
Sbjct: 80 VDGDRTL---------VDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFAL-LHQ 129
Query: 313 PTTLLHFLMFDIYRVLRPGGLF 334
+ L+ + +L PGG
Sbjct: 130 D---IIELLSAMRTLLVPGGAL 148
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 290 QRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349
+L ++ D+ +S L +++ + L +++ L PGG F F
Sbjct: 99 DKLHLPQDSFDLAYSSLAL-HYVED--VARLFRTVHQALSPGGHFV---FSTEHPIYMAP 152
Query: 350 YVPLIESVGFNKLKWVVGRKLDRGPELRE 378
P + W + R L GP +
Sbjct: 153 ARPGWAIDAEGRRTWPIDRYLVEGPRKTD 181
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIV----TTSMNLNGPFNNFIASRGVVPL 284
+ K G I +D G G + ++E + L +
Sbjct: 13 IFEGKKGVI---VDYGCGNGFYCKYLLEFATKLYCIDINVIA-LK-------EVKEKFDS 61
Query: 285 YISISQRLPFFDNTLDIVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGLFWLDHF 339
I++S DN++D + + + ++ ++ R+L+ G + +
Sbjct: 62 VITLSDPKEIPDNSVDFILFANSFHDMDDKQHVIS----EVKRILKDDGRVIIIDW 113
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 6e-04
Identities = 27/153 (17%), Positives = 41/153 (26%), Gaps = 29/153 (18%)
Query: 241 LDIGGGVATFAVRMMERNITIVT-----TSM------NLNGPFNNFIASRGVVPLYISIS 289
LD+G G + E V M P VV
Sbjct: 49 LDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSP---------VVCYEQKAI 99
Query: 290 QRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--QLE 347
+ + + ++V S L ++I + + +Y L+ G F F V
Sbjct: 100 EDIAIEPDAYNVVLSSLAL-HYIAS--FDDICKKVYINLKSSGSF----IFSVEHPVFTA 152
Query: 348 DVYVPLIESVGFNKLKWVVGRKLDRGPELREMY 380
D NKL W V R +
Sbjct: 153 DGRQDWYTDETGNKLHWPVDRYFNESMRTSHFL 185
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 6e-04
Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 25/181 (13%)
Query: 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIV----TTSMNLNGPFNNFIASRG 280
+ + L G +I L++G G A M+ + + + ASR
Sbjct: 34 LTKFLGELPAGA-KI-LELGCGAGYQAEAMLAAGFDVDATDGSPEL-AA------EASRR 84
Query: 281 VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340
+ ++ + D V + L + L L I+R L+PGGLF+ +
Sbjct: 85 LGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLK-LIWRALKPGGLFYASYKS 143
Query: 341 CVGAQL-----------EDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKPF 389
G E+ G V + + +L + KP
Sbjct: 144 GEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKPE 203
Query: 390 L 390
L
Sbjct: 204 L 204
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 392 | |||
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.71 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.69 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.69 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.68 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.68 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.67 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.66 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.66 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.66 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.65 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.65 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.65 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.65 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.65 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.64 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.64 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.64 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.63 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.63 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.63 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.63 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.62 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.62 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.62 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.61 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.61 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.61 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.61 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.6 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.59 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.59 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.59 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.59 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.59 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.59 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.59 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.59 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.58 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.58 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.58 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.58 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.58 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.58 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.58 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.57 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.57 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.57 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.57 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.57 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.57 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.56 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.56 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.55 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.55 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.55 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.54 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.54 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.54 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.54 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.53 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.52 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.51 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.51 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.51 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.5 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.5 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.49 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.49 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.48 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.46 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.46 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.46 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.46 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.45 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.44 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.44 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.43 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.43 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.43 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.43 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.43 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.42 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.42 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.42 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.42 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.41 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.41 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.41 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.4 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.4 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.39 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.39 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.39 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.38 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.37 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.37 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.37 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.35 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.35 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.35 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.35 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.34 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.34 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.33 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.33 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.33 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.32 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.32 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.32 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.32 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.31 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.31 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.31 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.3 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.3 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.29 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.29 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.28 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.27 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.26 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.26 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.25 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.25 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.24 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.24 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.23 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.23 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.23 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.23 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.22 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.22 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.21 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.21 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.21 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.19 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.19 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.19 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.19 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.18 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.18 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.18 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.16 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.15 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.15 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.15 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.14 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.13 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.13 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.13 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.13 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.12 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.12 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.12 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.11 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.11 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.1 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.1 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.09 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.08 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.08 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.08 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.07 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.07 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.06 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.06 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.06 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.05 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.04 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.04 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.03 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.03 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.03 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.03 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.02 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.02 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.02 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.02 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.01 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.0 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.99 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.99 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.99 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.99 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.98 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.98 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.98 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.97 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.96 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.96 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.95 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.95 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.95 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.95 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.94 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.94 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.93 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.93 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.93 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.93 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.93 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.92 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.92 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.92 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.92 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.91 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.91 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.91 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.91 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.89 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.89 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.88 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.88 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.87 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.86 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.86 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.85 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.85 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.81 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.81 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.8 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.79 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.79 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.77 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.77 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.76 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.76 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.75 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.75 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.74 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.74 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.73 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.72 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.71 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.71 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.68 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.68 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.65 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.65 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.64 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.63 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.61 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.58 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.53 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.53 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.52 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.5 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.5 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.47 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.46 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.45 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.36 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.35 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.29 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.27 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.26 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.24 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.2 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.19 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.19 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.18 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.13 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.1 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.97 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.97 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.96 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.94 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.94 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.91 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.86 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.85 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.82 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.79 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.71 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.71 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.67 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.64 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.64 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.6 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.6 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.53 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.5 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.46 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.42 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.34 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.33 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.24 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.17 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.11 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.92 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.91 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.66 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.55 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.13 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 95.84 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.73 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.73 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.57 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.31 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.29 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.05 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.81 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.54 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.26 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.7 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 92.53 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 92.12 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 91.7 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 91.64 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.43 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 90.54 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.41 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 90.27 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 89.87 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 89.49 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 89.47 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 89.4 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.23 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 89.06 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 88.31 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 87.86 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 87.83 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 87.81 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 87.79 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 86.18 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 85.94 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 85.73 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 85.67 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 85.65 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 85.6 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 85.08 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 84.49 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 84.45 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 83.56 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 83.36 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 83.35 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 83.29 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 83.21 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 82.78 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 82.73 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 82.68 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 82.67 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 82.49 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 82.1 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 81.83 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 81.29 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 81.14 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 80.78 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 80.55 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 80.48 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 80.09 |
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=144.10 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=117.7
Q ss_pred HHHHHHh-hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEE
Q 047630 224 SIDEVLA-TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 224 lI~~ll~-l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
.+..++. +.++.+| ||+|||+|.++..+++.+..++++| ++......+.++-.+.+..++...++ .+++||+|
T Consensus 33 ~~~~~~~~~~~~~~v---LDiGcG~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v 106 (211)
T 3e23_A 33 TLTKFLGELPAGAKI---LELGCGAGYQAEAMLAAGFDVDATD--GSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAV 106 (211)
T ss_dssp HHHHHHTTSCTTCEE---EESSCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEE
T ss_pred HHHHHHHhcCCCCcE---EEECCCCCHHHHHHHHcCCeEEEEC--CCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEE
Confidence 3444443 3444455 9999999999999999999999855 53455555554424688899999998 78999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-----------chHHHHHHHHHHcC-CeEEEEEEeecc
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-----------QLEDVYVPLIESVG-FNKLKWVVGRKL 370 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-----------~l~~~l~~ll~~aG-f~~i~w~~~~k~ 370 (392)
++..+++|+ +.++...+++++.|+|||||++++........ -..+++.++++++| |+.+........
T Consensus 107 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~ 185 (211)
T 3e23_A 107 WAHACLLHV-PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGK 185 (211)
T ss_dssp EECSCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEE
T ss_pred EecCchhhc-CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCC
Confidence 999999885 45577789999999999999999986533211 12677999999999 999988866543
Q ss_pred CCCCcccceeeEEEEEcCCCC
Q 047630 371 DRGPELREMYLSALLEKPFLD 391 (392)
Q Consensus 371 d~~~~~~e~ylsai~~Kp~~~ 391 (392)
... +....|+.++..||..|
T Consensus 186 ~~~-~~~~~wl~~~~~~~~~~ 205 (211)
T 3e23_A 186 GFD-QELAQFLHVSVRKPELE 205 (211)
T ss_dssp CTT-SCEEEEEEEEEECCCC-
T ss_pred CCC-CCCceEEEEEEecCccc
Confidence 322 33455666777776543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=140.70 Aligned_cols=140 Identities=13% Similarity=0.071 Sum_probs=109.7
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCccc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFD 300 (392)
..++..++... +.+| ||+|||+|.++..+++.+..+++ +|++..+.+.+.++. .+.++++|+..+++++++||
T Consensus 31 ~~~l~~~~~~~-~~~v---LDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD 104 (203)
T 3h2b_A 31 RVLIEPWATGV-DGVI---LDVGSGTGRWTGHLASLGHQIEG--LEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWA 104 (203)
T ss_dssp HHHHHHHHHHC-CSCE---EEETCTTCHHHHHHHHTTCCEEE--ECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEE
T ss_pred HHHHHHHhccC-CCeE---EEecCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeE
Confidence 34455555433 4566 99999999999999999999988 556455555555542 47899999999999999999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc------------chHHHHHHHHHHcCCeEEEEEEee
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------------QLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------------~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+|++..+++|+ +.++...+++++.|+|||||++++..+..... -..+++.++++++||+.+......
T Consensus 105 ~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 105 GLLAWYSLIHM-GPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp EEEEESSSTTC-CTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred EEEehhhHhcC-CHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 99999999985 44566789999999999999999987543320 116779999999999999887553
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-16 Score=147.30 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=103.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc----CCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER----NITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~----g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sF 299 (392)
+.++.+| ||||||+|.++..+++. +.+++| +|++..+.+.+.++ + .+.++++|+..+|+. .|
T Consensus 68 ~~~~~~v---LDlGcGtG~~~~~la~~~~~~~~~v~g--vD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~ 140 (261)
T 4gek_A 68 VQPGTQV---YDLGCSLGAATLSVRRNIHHDNCKIIA--IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NA 140 (261)
T ss_dssp CCTTCEE---EEETCTTTHHHHHHHHTCCSSSCEEEE--EESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SE
T ss_pred CCCCCEE---EEEeCCCCHHHHHHHHhcCCCCCEEEE--EECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--cc
Confidence 3456666 99999999999999874 568888 55545555544332 2 378899999998874 59
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc----------------------------------
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------------------------------- 345 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------------------------------- 345 (392)
|+|++.++++++ ++.+...+|++++|+|||||+|++.+.......
T Consensus 141 d~v~~~~~l~~~-~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~ 219 (261)
T 4gek_A 141 SMVVLNFTLQFL-EPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENV 219 (261)
T ss_dssp EEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHH
T ss_pred ccceeeeeeeec-CchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccc
Confidence 999999999874 556667899999999999999999875322110
Q ss_pred ----hHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEcCCCC
Q 047630 346 ----LEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKPFLD 391 (392)
Q Consensus 346 ----l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp~~~ 391 (392)
..+++.++++++||+.++.-.. .-.|-+.+..||-..
T Consensus 220 ~~~~s~~~~~~~L~~AGF~~ve~~fq---------~~nF~~~iA~K~~~~ 260 (261)
T 4gek_A 220 MLTDSVETHKARLHKAGFEHSELWFQ---------CFNFGSLVALKAEDA 260 (261)
T ss_dssp CCCBCHHHHHHHHHHHTCSEEEEEEE---------ETTEEEEEEECCTTC
T ss_pred ccCCCHHHHHHHHHHcCCCeEEEEEE---------eccEEEEEEEEcCCC
Confidence 0345778999999998753211 112345678888653
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-16 Score=141.54 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHh----cC--CccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~ 291 (392)
.+.+++.+ .+.++.+| ||+|||+|.++..+++.+ ..++++| ++....+.+.+ .+ .+.++.+|...
T Consensus 26 ~~~~~~~~-~~~~~~~v---LDiG~G~G~~~~~l~~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 99 (219)
T 3dh0_A 26 PEKVLKEF-GLKEGMTV---LDVGTGAGFYLPYLSKMVGEKGKVYAID--VQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99 (219)
T ss_dssp HHHHHHHH-TCCTTCEE---EESSCTTCTTHHHHHHHHTTTCEEEEEE--SCHHHHHHHHHHHHHHTCTTEEEEECBTTB
T ss_pred HHHHHHHh-CCCCCCEE---EEEecCCCHHHHHHHHHhCCCcEEEEEE--CCHHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 34444433 34555555 999999999999999865 6888855 43444443322 22 37889999999
Q ss_pred CCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc---------hHHHHHHHHHHcCCeEE
Q 047630 292 LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------LEDVYVPLIESVGFNKL 362 (392)
Q Consensus 292 Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------l~~~l~~ll~~aGf~~i 362 (392)
+++++++||+|++..+++++ .+...+++++.|+|||||++++.++...... ..+++.++++++||+.+
T Consensus 100 ~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 176 (219)
T 3dh0_A 100 IPLPDNTVDFIFMAFTFHEL---SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVG 176 (219)
T ss_dssp CSSCSSCEEEEEEESCGGGC---SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCeeEEEeehhhhhc---CCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEE
Confidence 99999999999999999997 3445799999999999999999876543211 15679999999999999
Q ss_pred EEEEeeccCCCCcccceeeEEEEEcCC
Q 047630 363 KWVVGRKLDRGPELREMYLSALLEKPF 389 (392)
Q Consensus 363 ~w~~~~k~d~~~~~~e~ylsai~~Kp~ 389 (392)
+..... ... ...+++|+.
T Consensus 177 ~~~~~~--------~~~-~~~~~~k~~ 194 (219)
T 3dh0_A 177 RVVEVG--------KYC-FGVYAMIVK 194 (219)
T ss_dssp EEEEET--------TTE-EEEEEECC-
T ss_pred EEEeeC--------Cce-EEEEEEecc
Confidence 876331 122 346778764
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=145.90 Aligned_cols=138 Identities=19% Similarity=0.207 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPF 294 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf 294 (392)
.+.+++.+ ...++.+| ||||||+|.++..+++.+..++++| ++..+.+.+.+ .+ .+.+.++|.+.+|+
T Consensus 26 ~~~l~~~l-~~~~~~~v---LDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~ 99 (260)
T 1vl5_A 26 LAKLMQIA-ALKGNEEV---LDVATGGGHVANAFAPFVKKVVAFD--LTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 99 (260)
T ss_dssp HHHHHHHH-TCCSCCEE---EEETCTTCHHHHHHGGGSSEEEEEE--SCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS
T ss_pred HHHHHHHh-CCCCCCEE---EEEeCCCCHHHHHHHHhCCEEEEEe--CCHHHHHHHHHHHHhcCCCceEEEEecHHhCCC
Confidence 45555443 34444555 9999999999999999888888855 54455443332 23 37889999999999
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc---------------------chHHHHHHH
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA---------------------QLEDVYVPL 353 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~---------------------~l~~~l~~l 353 (392)
++++||+|++..+++|+. +...+|+++.|+|||||+|++.+...... ...+.+.++
T Consensus 100 ~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (260)
T 1vl5_A 100 TDERFHIVTCRIAAHHFP---NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKM 176 (260)
T ss_dssp CTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred CCCCEEEEEEhhhhHhcC---CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHH
Confidence 999999999999999984 34579999999999999999876533211 114568899
Q ss_pred HHHcCCeEEEEEEe
Q 047630 354 IESVGFNKLKWVVG 367 (392)
Q Consensus 354 l~~aGf~~i~w~~~ 367 (392)
++++||+.+.+...
T Consensus 177 l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 177 LEEAGFELEELHCF 190 (260)
T ss_dssp HHHHTCEEEEEEEE
T ss_pred HHHCCCeEEEEEEe
Confidence 99999998877754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-15 Score=136.30 Aligned_cols=153 Identities=11% Similarity=0.138 Sum_probs=110.8
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC--CccEEEeccCcCCCCCCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg--~i~~~~~d~~~Lpf~d~s 298 (392)
...+++.+. ..++.+| ||+|||+|.++..+++.+..+++ +|++....+.+.++. .+.++.+|+..++++ ++
T Consensus 34 ~~~~l~~~~-~~~~~~v---LDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~ 106 (220)
T 3hnr_A 34 YEDILEDVV-NKSFGNV---LEFGVGTGNLTNKLLLAGRTVYG--IEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TS 106 (220)
T ss_dssp HHHHHHHHH-HTCCSEE---EEECCTTSHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SC
T ss_pred HHHHHHHhh-ccCCCeE---EEeCCCCCHHHHHHHhCCCeEEE--EeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CC
Confidence 455555544 3455555 99999999999999999999988 555445555444442 478999999999988 99
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc---------------------------hHHHHH
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------------------------LEDVYV 351 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------------------------l~~~l~ 351 (392)
||+|++..+++++ ++.....+++++.|+|||||.+++.+....... ..+++.
T Consensus 107 fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (220)
T 3hnr_A 107 IDTIVSTYAFHHL-TDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQ 185 (220)
T ss_dssp CSEEEEESCGGGS-CHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHH
T ss_pred eEEEEECcchhcC-ChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHH
Confidence 9999999999986 334434599999999999999999874321110 136789
Q ss_pred HHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEcCCCC
Q 047630 352 PLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKPFLD 391 (392)
Q Consensus 352 ~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp~~~ 391 (392)
++++++||+++..... ...|+ +..+|+...
T Consensus 186 ~~l~~aGf~v~~~~~~---------~~~w~-~~~~~~~~~ 215 (220)
T 3hnr_A 186 TIFENNGFHVTFTRLN---------HFVWV-MEATKQLEH 215 (220)
T ss_dssp HHHHHTTEEEEEEECS---------SSEEE-EEEEECSCC
T ss_pred HHHHHCCCEEEEeecc---------ceEEE-Eeehhhhhh
Confidence 9999999987765411 23333 567776543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-16 Score=138.69 Aligned_cols=122 Identities=16% Similarity=0.354 Sum_probs=95.3
Q ss_pred EEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||+|||+|.++..+++. +..++++ |++....+.+.++ + .+.++++|...+++++++||+|++..+++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRAL--DFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEE--ECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 5599999999999999996 6677774 4544444433332 2 378899999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--------------------------chHHHHHHHHHHcCCeEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------------------------QLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------------------------~l~~~l~~ll~~aGf~~i~w 364 (392)
+ .+...+++++.|+|||||++++.+...... ...+++.++++++||+.++.
T Consensus 124 ~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 200 (219)
T 3dlc_A 124 W---EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI 200 (219)
T ss_dssp C---SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred c---cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence 7 445579999999999999999986432110 01467899999999999877
Q ss_pred E
Q 047630 365 V 365 (392)
Q Consensus 365 ~ 365 (392)
.
T Consensus 201 ~ 201 (219)
T 3dlc_A 201 I 201 (219)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.2e-16 Score=141.31 Aligned_cols=137 Identities=17% Similarity=0.095 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC--CccEEEeccCcCCCCCCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg--~i~~~~~d~~~Lpf~d~s 298 (392)
.+.+++.+....++.+| ||||||+|.++..+++.+.+++|+| ++....+.+.++. .+.++++|++.+ +++++
T Consensus 30 ~~~~~~~l~~~~~~~~v---LDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~ 103 (250)
T 2p7i_A 30 HPFMVRAFTPFFRPGNL---LELGSFKGDFTSRLQEHFNDITCVE--ASEEAISHAQGRLKDGITYIHSRFEDA-QLPRR 103 (250)
T ss_dssp HHHHHHHHGGGCCSSCE---EEESCTTSHHHHHHTTTCSCEEEEE--SCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSC
T ss_pred HHHHHHHHHhhcCCCcE---EEECCCCCHHHHHHHHhCCcEEEEe--CCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCc
Confidence 34455555545555666 9999999999999999998998854 5445555444442 478899998887 47889
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHH-HcccCCcEEEEEeecccc-----------------------------cchHH
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIY-RVLRPGGLFWLDHFFCVG-----------------------------AQLED 348 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~-RvLKPGG~lii~~~~~~~-----------------------------~~l~~ 348 (392)
||+|++..+++|+.+ ...+++++. |+|||||++++....... .-..+
T Consensus 104 fD~v~~~~~l~~~~~---~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (250)
T 2p7i_A 104 YDNIVLTHVLEHIDD---PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALD 180 (250)
T ss_dssp EEEEEEESCGGGCSS---HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHH
T ss_pred ccEEEEhhHHHhhcC---HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHH
Confidence 999999999999743 357999999 999999999998743210 00156
Q ss_pred HHHHHHHHcCCeEEEEEE
Q 047630 349 VYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 349 ~l~~ll~~aGf~~i~w~~ 366 (392)
++.++++++||+.+++..
T Consensus 181 ~~~~~l~~~Gf~~~~~~~ 198 (250)
T 2p7i_A 181 TLERDASRAGLQVTYRSG 198 (250)
T ss_dssp HHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEee
Confidence 799999999999998764
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=140.91 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=108.1
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCC
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFD 296 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d 296 (392)
...++.++.......-.+|||||||+|.++..+++. +..++++| ++....+.+.++ ..+.++++|...+|+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 118 (266)
T 3ujc_A 41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGID--ICSNIVNMANERVSGNNKIIFEANDILTKEFPE 118 (266)
T ss_dssp HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCT
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHHhhcCCCeEEEECccccCCCCC
Confidence 344555554332122234499999999999999996 88998855 544555555544 24788999999999999
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-c-----------------chHHHHHHHHHHcC
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-A-----------------QLEDVYVPLIESVG 358 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-~-----------------~l~~~l~~ll~~aG 358 (392)
++||+|++..+++|+ ++.+...+++++.|+|||||++++.++.... . ...+.+.++++++|
T Consensus 119 ~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 197 (266)
T 3ujc_A 119 NNFDLIYSRDAILAL-SLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACN 197 (266)
T ss_dssp TCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTT
T ss_pred CcEEEEeHHHHHHhc-ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcC
Confidence 999999999999985 5566778999999999999999998764332 0 01567999999999
Q ss_pred CeEEEEEEe
Q 047630 359 FNKLKWVVG 367 (392)
Q Consensus 359 f~~i~w~~~ 367 (392)
|+.+.....
T Consensus 198 f~~~~~~~~ 206 (266)
T 3ujc_A 198 FKNVVSKDL 206 (266)
T ss_dssp CEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 999987743
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=143.68 Aligned_cols=131 Identities=6% Similarity=-0.053 Sum_probs=97.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc------------------CCccEEEeccCcCC
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR------------------GVVPLYISISQRLP 293 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r------------------g~i~~~~~d~~~Lp 293 (392)
.++.+| ||+|||+|..+..|+++|..|+|+|++ ..+.+.+.++ ..+.++++|+..++
T Consensus 21 ~~~~~v---LD~GCG~G~~~~~la~~g~~V~gvD~S--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 95 (203)
T 1pjz_A 21 VPGARV---LVPLCGKSQDMSWLSGQGYHVVGAELS--EAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 95 (203)
T ss_dssp CTTCEE---EETTTCCSHHHHHHHHHCCEEEEEEEC--HHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred CCCCEE---EEeCCCCcHhHHHHHHCCCeEEEEeCC--HHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence 445555 999999999999999999999995544 4554444332 24789999999999
Q ss_pred CCC-CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee-cccc---c----chHHHHHHHHHHcCCeEEEE
Q 047630 294 FFD-NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF-FCVG---A----QLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 294 f~d-~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~-~~~~---~----~l~~~l~~ll~~aGf~~i~w 364 (392)
+.+ ++||+|++..+++++ +.+....++++++|+|||||++++... +... . -..+++.+++++ ||+.+..
T Consensus 96 ~~~~~~fD~v~~~~~l~~l-~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 96 ARDIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp HHHHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred cccCCCEEEEEECcchhhC-CHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEe
Confidence 876 899999999999875 556667899999999999998443332 2110 0 125678888888 9998887
Q ss_pred EEeec
Q 047630 365 VVGRK 369 (392)
Q Consensus 365 ~~~~k 369 (392)
.....
T Consensus 174 ~~~~~ 178 (203)
T 1pjz_A 174 GGQDT 178 (203)
T ss_dssp EESSC
T ss_pred ccccc
Confidence 75543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=139.58 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=106.3
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C-CccEEEeccCcCCCCCCcccEEEEcc-cccccC
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRLPFFDNTLDIVHSMH-VLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~Lpf~d~sFDlV~s~~-~l~~~~ 312 (392)
.|||+|||+|.++..+++.+..+++ +|++..+.+.+.++ + .+.++++|...++++ ++||+|++.. +++|+.
T Consensus 40 ~vLdiG~G~G~~~~~l~~~~~~~~~--~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~ 116 (246)
T 1y8c_A 40 DYLDLACGTGNLTENLCPKFKNTWA--VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYII 116 (246)
T ss_dssp EEEEETCTTSTTHHHHGGGSSEEEE--ECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCC
T ss_pred eEEEeCCCCCHHHHHHHHCCCcEEE--EECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccccccC
Confidence 3499999999999999999999988 55544444433322 2 478899999998876 8899999998 999976
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeeccc-----------------------------------------c--------
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-----------------------------------------G-------- 343 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~-----------------------------------------~-------- 343 (392)
++.+...+++++.++|||||+++++..... .
T Consensus 117 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (246)
T 1y8c_A 117 DSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDE 196 (246)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccccEE
Confidence 667788999999999999999988532100 0
Q ss_pred -----cchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEcC
Q 047630 344 -----AQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKP 388 (392)
Q Consensus 344 -----~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp 388 (392)
.-..+++.++++++||+.++................ +..+.+||
T Consensus 197 ~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~-~~~varK~ 245 (246)
T 1y8c_A 197 EHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTER-ITYLVKLG 245 (246)
T ss_dssp EEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSE-EEEEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCcee-EEEEEEec
Confidence 002677999999999999988644221111112222 24688887
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=140.37 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=103.3
Q ss_pred HHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCc
Q 047630 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 225 I~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~s 298 (392)
+-+.+.+.++.+| ||||||+|.++..+++.+..++++| ++..+.+.+.+ .+ .+.+.++|.+.+|+++++
T Consensus 13 ~~~~~~~~~~~~v---LDiGcG~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 13 MIKTAECRAEHRV---LDIGAGAGHTALAFSPYVQECIGVD--ATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHTCCTTCEE---EEESCTTSHHHHHHGGGSSEEEEEE--SCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHhCcCCCCEE---EEEccCcCHHHHHHHHhCCEEEEEE--CCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 3444556666666 9999999999999999988998855 43444443322 22 378899999999999999
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc---------------------chHHHHHHHHHHc
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA---------------------QLEDVYVPLIESV 357 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~---------------------~l~~~l~~ll~~a 357 (392)
||+|++..+++|+. +...+++++.|+|||||++++.+...... ...+++.++++++
T Consensus 88 fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 164 (239)
T 1xxl_A 88 FDIITCRYAAHHFS---DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSAN 164 (239)
T ss_dssp EEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHT
T ss_pred EEEEEECCchhhcc---CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHC
Confidence 99999999999984 44579999999999999999876543211 1156689999999
Q ss_pred CCeEEEEEEe
Q 047630 358 GFNKLKWVVG 367 (392)
Q Consensus 358 Gf~~i~w~~~ 367 (392)
||+.+.....
T Consensus 165 Gf~~~~~~~~ 174 (239)
T 1xxl_A 165 QLAYQDIQKW 174 (239)
T ss_dssp TEEEEEEEEE
T ss_pred CCcEEEEEee
Confidence 9998876643
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=142.90 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=80.8
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEcc-cccccCCchh
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMH-VLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~-~l~~~~~~~~ 316 (392)
.|||||||+|.++..+++.+..++++| ++..+.+.+.++. .+.++++|+..+++ +++||+|++.. +++|+.++++
T Consensus 53 ~vLDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~ 129 (263)
T 3pfg_A 53 SLLDVACGTGMHLRHLADSFGTVEGLE--LSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAE 129 (263)
T ss_dssp EEEEETCTTSHHHHHHTTTSSEEEEEE--SCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHH
T ss_pred cEEEeCCcCCHHHHHHHHcCCeEEEEE--CCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHH
Confidence 349999999999999999999998855 5445555554442 47899999999988 78999999998 9998766677
Q ss_pred HHHHHHHHHHcccCCcEEEEEe
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~ 338 (392)
...+++++.++|||||+|++..
T Consensus 130 ~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 130 LDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCcEEEEEe
Confidence 7889999999999999999863
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-15 Score=137.21 Aligned_cols=145 Identities=18% Similarity=0.289 Sum_probs=109.2
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CC-------ccEEEeccCcCCCCCCccc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GV-------VPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~-------i~~~~~d~~~Lpf~d~sFD 300 (392)
.++.+| ||+|||+|.++..+++.+..++++| ++....+.+.++ +. +.+..++...+++++++||
T Consensus 29 ~~~~~v---LdiG~G~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 103 (235)
T 3sm3_A 29 QEDDEI---LDIGCGSGKISLELASKGYSVTGID--INSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFD 103 (235)
T ss_dssp CTTCEE---EEETCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEE
T ss_pred CCCCeE---EEECCCCCHHHHHHHhCCCeEEEEE--CCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCcee
Confidence 344555 9999999999999999999999955 434444444332 22 5788999999999999999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-------------------------------------
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------------------------------- 343 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------------------------------------- 343 (392)
+|++..+++++.+......+++++.|+|||||++++.++....
T Consensus 104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 9999999999877776778999999999999999998653210
Q ss_pred cchHHHHHHHHHHcCCeEEEEEEeec-cCCCCcccceee
Q 047630 344 AQLEDVYVPLIESVGFNKLKWVVGRK-LDRGPELREMYL 381 (392)
Q Consensus 344 ~~l~~~l~~ll~~aGf~~i~w~~~~k-~d~~~~~~e~yl 381 (392)
.-..+++.++++++||+++.+....- ...+......|+
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~g~~~~~~~i 222 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRVKELETRTGNKILGFVI 222 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEecceeeccCCccceEEE
Confidence 01266799999999999999876553 222334444444
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-16 Score=150.07 Aligned_cols=173 Identities=21% Similarity=0.292 Sum_probs=118.2
Q ss_pred ccccccCCCCChHH-HHHHHHHcCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCcchhhhccccC
Q 047630 114 MSYKVNASCPDDEL-LAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQ 192 (392)
Q Consensus 114 m~y~~~~~Cp~~~~-l~~~~~~~~C~~~~~r~c~~~~p~~y~~p~p~p~s~~~~p~d~~~~W~~y~~~~~~~L~~~~~~~ 192 (392)
|++. ||.|.. +........|+ ++|+++.+..||.+.++.+.+..+.|++....+.
T Consensus 1 m~~~----Cp~C~~~~~~~~~~~~C~---~~~~~~~~~~Gy~~~~~~~~~~~~~~~~~~~~~~----------------- 56 (269)
T 1p91_A 1 MSFS----CPLCHQPLSREKNSYICP---QRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMMQ----------------- 56 (269)
T ss_dssp -CBB----CTTTCCBCEEETTEEECT---TCCEEEBCTTSCEECSCSSSSCSCCCSSSHHHHH-----------------
T ss_pred Cccc----CCCCCccceeCCCEEECC---CCCcCCcCCCEEEEeecccccCCCCCCCCHHHHH-----------------
Confidence 5555 999966 43333456897 7899999999999999888776666665543221
Q ss_pred CCCCCCCcccccccccccceeccCCCCc-HHHHHHHHHhh--CCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecC
Q 047630 193 KGFDDCKDCFDLQGVEKIRWTQKKGNGG-LDFSIDEVLAT--KKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMN 267 (392)
Q Consensus 193 ~~~~~c~~cFd~~~~e~~~w~~~~~~~~-~~~lI~~ll~l--~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD 267 (392)
++..|...+.... .+.+.+.+... .++.+| ||||||+|.++..+++. +..+++ +|
T Consensus 57 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---LdiG~G~G~~~~~l~~~~~~~~v~~--vD 116 (269)
T 1p91_A 57 ---------------ARRAFLDAGHYQPLRDAIVAQLRERLDDKATAV---LDIGCGEGYYTHAFADALPEITTFG--LD 116 (269)
T ss_dssp ---------------HHHHHHTTTTTHHHHHHHHHHHHHHSCTTCCEE---EEETCTTSTTHHHHHHTCTTSEEEE--EE
T ss_pred ---------------HHHHHHhCCCcHHHHHHHHHHHHHhcCCCCCEE---EEECCCCCHHHHHHHHhCCCCeEEE--Ee
Confidence 1122222221101 12222223322 233444 99999999999999986 778888 45
Q ss_pred CCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 268 LNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 268 ~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
++..+.+.+.++. .+.+..+|...+++++++||+|++..+.. +++++.|+|||||.+++....
T Consensus 117 ~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~----------~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 117 VSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC----------KAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp SCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC----------CHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh----------hHHHHHHhcCCCcEEEEEEcC
Confidence 5455555555553 46889999999999999999999876532 479999999999999888754
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-15 Score=134.43 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=118.1
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchH-HHHHHHcCCEEEEEecCCCchhHHHHHh----c-CCccEEEeccCcCCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATF-AVRMMERNITIVTTSMNLNGPFNNFIAS----R-GVVPLYISISQRLPF 294 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~-a~~La~~g~~vvg~~iD~~a~~~~~aa~----r-g~i~~~~~d~~~Lpf 294 (392)
+..+++.+....++.+| ||+|||+|.+ ...+++.+..++++| ++..+.+.+.+ . ..+.+.++|+..+++
T Consensus 11 ~~~~~~~~~~~~~~~~v---LDiGcG~G~~~~~~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 85 (209)
T 2p8j_A 11 LYRFLKYCNESNLDKTV---LDCGAGGDLPPLSIFVEDGYKTYGIE--ISDLQLKKAENFSRENNFKLNISKGDIRKLPF 85 (209)
T ss_dssp HHHHHHHHHHSSSCSEE---EEESCCSSSCTHHHHHHTTCEEEEEE--CCHHHHHHHHHHHHHHTCCCCEEECCTTSCCS
T ss_pred HHHHHHHHhccCCCCEE---EEECCCCCHHHHHHHHhCCCEEEEEE--CCHHHHHHHHHHHHhcCCceEEEECchhhCCC
Confidence 45555555545555555 9999999997 556677888999855 43444443322 2 247899999999999
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc------------------------c--hHH
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------------------------Q--LED 348 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------------------------~--l~~ 348 (392)
++++||+|++..+++|+ +..+...+++++.|+|||||++++..+..... . ..+
T Consensus 86 ~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (209)
T 2p8j_A 86 KDESMSFVYSYGTIFHM-RKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLE 164 (209)
T ss_dssp CTTCEEEEEECSCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHH
T ss_pred CCCceeEEEEcChHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHH
Confidence 89999999999999885 56677889999999999999999887532110 0 156
Q ss_pred HHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEcCCC
Q 047630 349 VYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKPFL 390 (392)
Q Consensus 349 ~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp~~ 390 (392)
++.++++++||...+.......+.+......|...+.+|..+
T Consensus 165 e~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~ 206 (209)
T 2p8j_A 165 EADKYFKDMKVLFKEDRVVERINDGLKIKQGYVDYIAEKFSK 206 (209)
T ss_dssp HHHHTTTTSEEEEEEEEEEEEEETTEEEEEEEEEEEEECCCC
T ss_pred HHHHHHhhcCceeeeeeeeehhhcCCcccceeeeeehhhhhh
Confidence 688999999988776655554444444457777788887543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-15 Score=134.01 Aligned_cols=139 Identities=12% Similarity=0.090 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC--CccEEEeccCcCCCCCCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg--~i~~~~~d~~~Lpf~d~s 298 (392)
...+++.+..+.++.+| ||||||+|.++..+++.+..++++| ++....+.+.+.+ .+.++.+|...+ +++++
T Consensus 34 ~~~~~~~l~~~~~~~~v---LdiG~G~G~~~~~l~~~~~~v~~~D--~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~ 107 (218)
T 3ou2_A 34 APAALERLRAGNIRGDV---LELASGTGYWTRHLSGLADRVTALD--GSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQ 107 (218)
T ss_dssp HHHHHHHHTTTTSCSEE---EEESCTTSHHHHHHHHHSSEEEEEE--SCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSC
T ss_pred HHHHHHHHhcCCCCCeE---EEECCCCCHHHHHHHhcCCeEEEEe--CCHHHHHHHHhcCCCCeEEEecccccC-CCCCc
Confidence 44455544445554555 9999999999999999999999854 5445555555544 378889999888 78899
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc------------------------------cchHH
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------------------------AQLED 348 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------------------------------~~l~~ 348 (392)
||+|++..+++|+ ++..+..+++++.|+|||||.+++.++.... -...+
T Consensus 108 ~D~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (218)
T 3ou2_A 108 WDAVFFAHWLAHV-PDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPA 186 (218)
T ss_dssp EEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHH
T ss_pred eeEEEEechhhcC-CHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHH
Confidence 9999999999985 4454578999999999999999888652210 01256
Q ss_pred HHHHHHHHcCCeEEEEEE
Q 047630 349 VYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 349 ~l~~ll~~aGf~~i~w~~ 366 (392)
++.++++++||++..|..
T Consensus 187 ~~~~~l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 187 ELTERLTALGWSCSVDEV 204 (218)
T ss_dssp HHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHCCCEEEeeec
Confidence 799999999999877764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=141.41 Aligned_cols=128 Identities=18% Similarity=0.175 Sum_probs=101.3
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC--CCCCCcccEEEEcccccc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL--PFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L--pf~d~sFDlV~s~~~l~~ 310 (392)
++.+| ||||||+|.++..+++.+..++| +|++....+.+.++ +.++.+|...+ ++++++||+|++..+++|
T Consensus 41 ~~~~v---LDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~ 113 (240)
T 3dli_A 41 GCRRV---LDIGCGRGEFLELCKEEGIESIG--VDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH 113 (240)
T ss_dssp TCSCE---EEETCTTTHHHHHHHHHTCCEEE--ECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred CCCeE---EEEeCCCCHHHHHHHhCCCcEEE--EECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence 34455 99999999999999999999988 55644555555544 78888888775 888999999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeeccccc---------------chHHHHHHHHHHcCCeEEEEEEee
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA---------------QLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~---------------~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+ ++.++..+++++.|+|||||++++........ -..+.+.++++++||+.+......
T Consensus 114 ~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 114 L-DPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp S-CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred C-CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence 6 45566789999999999999999987532210 115679999999999998877554
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-15 Score=137.18 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=101.1
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc---CCccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR---GVVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r---g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
++.+| ||||||+|.++..+++.+..++++| ++....+.+.++ ..+.++++|...+++++++||+|++..+++
T Consensus 53 ~~~~v---LDiG~G~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 127 (242)
T 3l8d_A 53 KEAEV---LDVGCGDGYGTYKLSRTGYKAVGVD--ISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127 (242)
T ss_dssp TTCEE---EEETCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTT
T ss_pred CCCeE---EEEcCCCCHHHHHHHHcCCeEEEEE--CCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHh
Confidence 44455 9999999999999999999999855 544555555544 247889999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc------------------chHHHHHHHHHHcCCeEEEEEEee
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------------------QLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------------------~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
|+ .+...+++++.++|||||++++..+..... -..+++.++++++||+.+......
T Consensus 128 ~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 201 (242)
T 3l8d_A 128 WT---EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVY 201 (242)
T ss_dssp SS---SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hc---cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeeccc
Confidence 97 344579999999999999999987532211 115679999999999999876443
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-15 Score=129.50 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=112.2
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCccc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFD 300 (392)
..++..+ +.++.+| ||+|||+|.++..+++.+..++++| ++....+.+.++. .+.++.+|...+++++++||
T Consensus 37 ~~~l~~~--~~~~~~v---LdiG~G~G~~~~~l~~~~~~v~~~D--~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D 109 (195)
T 3cgg_A 37 ARLIDAM--APRGAKI---LDAGCGQGRIGGYLSKQGHDVLGTD--LDPILIDYAKQDFPEARWVVGDLSVDQISETDFD 109 (195)
T ss_dssp HHHHHHH--SCTTCEE---EEETCTTTHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEE
T ss_pred HHHHHHh--ccCCCeE---EEECCCCCHHHHHHHHCCCcEEEEc--CCHHHHHHHHHhCCCCcEEEcccccCCCCCCcee
Confidence 3444444 3344555 9999999999999999999998855 5344444444432 37889999998888889999
Q ss_pred EEEEc-ccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccce
Q 047630 301 IVHSM-HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREM 379 (392)
Q Consensus 301 lV~s~-~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ 379 (392)
+|++. .++++ .+.+....++.++.++|||||.+++......... .+.+.++++++||+.+.......... ......
T Consensus 110 ~i~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~-~~~~~~~l~~~Gf~~~~~~~~~~~~~-~~~~~~ 186 (195)
T 3cgg_A 110 LIVSAGNVMGF-LAEDGREPALANIHRALGADGRAVIGFGAGRGWV-FGDFLEVAERVGLELENAFESWDLKP-FVQGSE 186 (195)
T ss_dssp EEEECCCCGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCC-HHHHHHHHHHHTEEEEEEESSTTCCB-CCTTCS
T ss_pred EEEECCcHHhh-cChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcC-HHHHHHHHHHcCCEEeeeecccccCc-CCCCCc
Confidence 99998 56666 4666677899999999999999998865443222 45588999999999887653322111 122333
Q ss_pred eeEEEEEcC
Q 047630 380 YLSALLEKP 388 (392)
Q Consensus 380 ylsai~~Kp 388 (392)
++..+++|+
T Consensus 187 ~~~~v~~k~ 195 (195)
T 3cgg_A 187 FLVAVFTKK 195 (195)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecC
Confidence 445788885
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-15 Score=135.08 Aligned_cols=127 Identities=14% Similarity=0.215 Sum_probs=97.2
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC---CCCCC-cccEEEEcc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL---PFFDN-TLDIVHSMH 306 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L---pf~d~-sFDlV~s~~ 306 (392)
..++.+| ||||||+|.++..+++.+..++++ |++....+.+.+++.+.+...+...+ ++..+ +||+|++..
T Consensus 50 ~~~~~~v---LdiG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~ 124 (227)
T 3e8s_A 50 GRQPERV---LDLGCGEGWLLRALADRGIEAVGV--DGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANF 124 (227)
T ss_dssp HTCCSEE---EEETCTTCHHHHHHHTTTCEEEEE--ESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred cCCCCEE---EEeCCCCCHHHHHHHHCCCEEEEE--cCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECc
Confidence 3344445 999999999999999999999884 45456666666666678888887766 55444 599999999
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-------------------c---------chHHHHHHHHHHcC
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-------------------A---------QLEDVYVPLIESVG 358 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-------------------~---------~l~~~l~~ll~~aG 358 (392)
+++ . .+...+++++.++|||||++++..+.... . ...+++.++++++|
T Consensus 125 ~l~-~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 200 (227)
T 3e8s_A 125 ALL-H---QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG 200 (227)
T ss_dssp CCC-S---SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred hhh-h---hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence 998 3 33346999999999999999998752110 0 02577999999999
Q ss_pred CeEEEEEE
Q 047630 359 FNKLKWVV 366 (392)
Q Consensus 359 f~~i~w~~ 366 (392)
|+++....
T Consensus 201 f~~~~~~~ 208 (227)
T 3e8s_A 201 LRLVSLQE 208 (227)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEec
Confidence 99998774
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=138.13 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=98.2
Q ss_pred cEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc---CCccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 238 RIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR---GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r---g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
.+|||+|||+|.++..+++.+. .++++| ++....+.+.++ ..+.++++|+..+++++++||+|++..+++++
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-- 121 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGID--LSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI-- 121 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC--
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEEEE--CCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh--
Confidence 3459999999999999999887 888854 544555544444 24789999999999999999999999999997
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeecc-------------cc-c----------------------------chHHHHH
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFC-------------VG-A----------------------------QLEDVYV 351 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~-------------~~-~----------------------------~l~~~l~ 351 (392)
.+...+++++.|+|||||++++..... .. . ...+++.
T Consensus 122 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 200 (253)
T 3g5l_A 122 -ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYI 200 (253)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHH
T ss_pred -hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHH
Confidence 445679999999999999999873210 00 0 0356799
Q ss_pred HHHHHcCCeEEEEEEe
Q 047630 352 PLIESVGFNKLKWVVG 367 (392)
Q Consensus 352 ~ll~~aGf~~i~w~~~ 367 (392)
++++++||+++.....
T Consensus 201 ~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 201 QTLLKNGFQINSVIEP 216 (253)
T ss_dssp HHHHHTTEEEEEEECC
T ss_pred HHHHHcCCeeeeeecC
Confidence 9999999999988743
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=132.14 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=94.6
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
+.++.+| ||+|||+|.++..+++.+..+++ +|++....+.+.++ ..+.+..+| +++++++||+|++..+++
T Consensus 15 ~~~~~~v---LDiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~ 86 (170)
T 3i9f_A 15 EGKKGVI---VDYGCGNGFYCKYLLEFATKLYC--IDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFH 86 (170)
T ss_dssp SSCCEEE---EEETCTTCTTHHHHHTTEEEEEE--ECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCST
T ss_pred cCCCCeE---EEECCCCCHHHHHHHhhcCeEEE--EeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchh
Confidence 4444455 99999999999999998767777 55645555555444 347788777 778899999999999999
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc---------hHHHHHHHHHHcCCeEEEEE
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------l~~~l~~ll~~aGf~~i~w~ 365 (392)
++. +...+++++.|+|||||++++.++...... ..+++.++++ ||+.++..
T Consensus 87 ~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 87 DMD---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp TCS---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred ccc---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc
Confidence 973 445799999999999999999987543221 1566888888 99999876
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-15 Score=142.10 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=99.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+.++.+| ||||||+|.++..+++. +..++++| ++..+.+.+.+ .+ .+.++++|...+|+++++||+|
T Consensus 80 ~~~~~~v---LDiGcG~G~~~~~l~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 154 (297)
T 2o57_A 80 LQRQAKG---LDLGAGYGGAARFLVRKFGVSIDCLN--IAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI 154 (297)
T ss_dssp CCTTCEE---EEETCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCEE---EEeCCCCCHHHHHHHHHhCCEEEEEe--CCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEE
Confidence 3444445 99999999999999986 88888855 53444443322 22 3789999999999999999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc------------------chHHHHHHHHHHcCCeEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------------------QLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------------------~l~~~l~~ll~~aGf~~i~w 364 (392)
++..+++|+.+ ...+++++.|+|||||+|++.+...... ...+.+.++++++||+.++.
T Consensus 155 ~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 155 WSQDAFLHSPD---KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp EEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred EecchhhhcCC---HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 99999999844 5679999999999999999987532210 01556889999999999987
Q ss_pred EEe
Q 047630 365 VVG 367 (392)
Q Consensus 365 ~~~ 367 (392)
...
T Consensus 232 ~~~ 234 (297)
T 2o57_A 232 FSR 234 (297)
T ss_dssp EEC
T ss_pred EEC
Confidence 643
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-15 Score=138.44 Aligned_cols=125 Identities=25% Similarity=0.307 Sum_probs=97.2
Q ss_pred EEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||||||+|.++..+++ .+..++++| ++....+.+.+ .+ .+.+..+|...+|+++++||+|++..+++|
T Consensus 64 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 141 (273)
T 3bus_A 64 RVLDVGCGIGKPAVRLATARDVRVTGIS--ISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHH 141 (273)
T ss_dssp EEEEESCTTSHHHHHHHHHSCCEEEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTT
T ss_pred EEEEeCCCCCHHHHHHHHhcCCEEEEEe--CCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhh
Confidence 449999999999999988 478888855 43444443322 23 378899999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeeccccc---------------------chHHHHHHHHHHcCCeEEEEEEee
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA---------------------QLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~---------------------~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+.+ ...+++++.|+|||||++++.++..... ...+.+.++++++||+.+.+....
T Consensus 142 ~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 142 MPD---RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp SSC---HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEECH
T ss_pred CCC---HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEECc
Confidence 733 3579999999999999999887543210 014668899999999999887553
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-15 Score=136.33 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=98.9
Q ss_pred cEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEcccccccC
Q 047630 238 RIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
.+|||||||+|.++..+++.+ ..+++ +|++....+.+.++ ..+.++++|...+++++++||+|++..+++|+
T Consensus 95 ~~vLDiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~- 171 (254)
T 1xtp_A 95 SRALDCGAGIGRITKNLLTKLYATTDL--LEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL- 171 (254)
T ss_dssp SEEEEETCTTTHHHHHTHHHHCSEEEE--EESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGS-
T ss_pred CEEEEECCCcCHHHHHHHHhhcCEEEE--EeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhC-
Confidence 345999999999999999874 45888 45544555544443 23788899999999989999999999999885
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeeccccc------------chHHHHHHHHHHcCCeEEEEEEee
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------------QLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------------~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
++.+...+++++.|+|||||++++.+...... ...+.+.++++++||+.++.....
T Consensus 172 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 172 TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence 44567789999999999999999987422111 125679999999999999887543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=132.12 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=106.5
Q ss_pred HHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCccc
Q 047630 227 EVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 227 ~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sFD 300 (392)
+.+...++.+| ||+|||+|.++..+++.+..++++|++ ....+.+.+ .+ .+.+..+|...+++ +++||
T Consensus 26 ~~~~~~~~~~v---LdiG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D 99 (199)
T 2xvm_A 26 EAVKVVKPGKT---LDLGCGNGRNSLYLAANGYDVDAWDKN--AMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYD 99 (199)
T ss_dssp HHTTTSCSCEE---EEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEE
T ss_pred HHhhccCCCeE---EEEcCCCCHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCce
Confidence 33444444545 999999999999999999999995544 344433222 22 37888999999888 88999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------chHHHHHHHHHHcCCeEEEEEEee--
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------QLEDVYVPLIESVGFNKLKWVVGR-- 368 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------~l~~~l~~ll~~aGf~~i~w~~~~-- 368 (392)
+|++..+++++ +++....+++++.++|||||++++........ -..+++.+++++ |+.+.+....
T Consensus 100 ~v~~~~~l~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~~~~ 176 (199)
T 2xvm_A 100 FILSTVVLMFL-EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNEDVGE 176 (199)
T ss_dssp EEEEESCGGGS-CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECCEEE
T ss_pred EEEEcchhhhC-CHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecccceE
Confidence 99999999885 55567889999999999999988766433211 014557788876 9998876431
Q ss_pred --ccCC-CCcccceeeEEEEEcC
Q 047630 369 --KLDR-GPELREMYLSALLEKP 388 (392)
Q Consensus 369 --k~d~-~~~~~e~ylsai~~Kp 388 (392)
..+. +......+...+.+||
T Consensus 177 ~~~~~~~g~~~~~~~~~~~arK~ 199 (199)
T 2xvm_A 177 LHRTDANGNRIKLRFATMLARKK 199 (199)
T ss_dssp EEEECTTSCEEEEEEEEEEEECC
T ss_pred EEeecCCCCeeeEEEEEEEEecC
Confidence 1111 1122223556788887
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=133.41 Aligned_cols=141 Identities=15% Similarity=0.164 Sum_probs=102.6
Q ss_pred HHHHHHHHHhhCC-CCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCC
Q 047630 221 LDFSIDEVLATKK-PGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLP 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~-~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lp 293 (392)
.+...+.++.+.+ ...-.+|||+|||+|.++..+++. +..++++| ++....+.+.++ +.+.++.+|...++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~ 105 (234)
T 3dtn_A 28 FDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVD--MSEKMLEIAKNRFRGNLKVKYIEADYSKYD 105 (234)
T ss_dssp HHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHTCSCTTEEEEESCTTTCC
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHhhccCCCEEEEeCchhccC
Confidence 3444454544332 112234599999999999999997 67888855 534454444433 24788999999998
Q ss_pred CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc----------------------------
Q 047630 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------------------------- 345 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------------------------- 345 (392)
+. ++||+|++..+++++ ++.....+++++.|+|||||++++.++......
T Consensus 106 ~~-~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (234)
T 3dtn_A 106 FE-EKYDMVVSALSIHHL-EDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGY 183 (234)
T ss_dssp CC-SCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC
T ss_pred CC-CCceEEEEeCccccC-CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 87 899999999999986 555556799999999999999999875432110
Q ss_pred ---------hHHHHHHHHHHcCCeEEEEE
Q 047630 346 ---------LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 346 ---------l~~~l~~ll~~aGf~~i~w~ 365 (392)
..+++.++++++||+.++..
T Consensus 184 ~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 212 (234)
T 3dtn_A 184 ERSKLDKDIEMNQQLNWLKEAGFRDVSCI 212 (234)
T ss_dssp ----CCCCCBHHHHHHHHHHTTCEEEEEE
T ss_pred HhcccccccCHHHHHHHHHHcCCCceeee
Confidence 13567889999999998765
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-15 Score=140.46 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=97.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.++.+| ||||||+|.++..+++.+..++| +|++..+.+.+.++..+.++++|++.+|+++++||+|++..+++|+
T Consensus 33 ~~~~~v---LDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 107 (261)
T 3ege_A 33 PKGSVI---ADIGAGTGGYSVALANQGLFVYA--VEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHF 107 (261)
T ss_dssp CTTCEE---EEETCTTSHHHHHHHTTTCEEEE--ECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGC
T ss_pred CCCCEE---EEEcCcccHHHHHHHhCCCEEEE--EeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhc
Confidence 344445 99999999999999999999998 5553444443333335789999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeeccccc--------------------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------------------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------------------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
.+...++++++|+|| ||++++.++..... ...+.+. +++++||+.+.....
T Consensus 108 ---~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 108 ---SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIPF 178 (261)
T ss_dssp ---SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred ---cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEe
Confidence 455679999999999 99887776532110 0145577 999999998887654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=136.91 Aligned_cols=129 Identities=12% Similarity=-0.046 Sum_probs=97.6
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-----------------------CCccEEEecc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-----------------------GVVPLYISIS 289 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-----------------------g~i~~~~~d~ 289 (392)
++.+| ||+|||+|..+..|++.|..|+| +|++..+.+.+.++ ..+.++++|+
T Consensus 68 ~~~~v---LD~GCG~G~~~~~La~~G~~V~g--vD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 68 SGLRV---FFPLCGKAIEMKWFADRGHTVVG--VEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp CSCEE---EETTCTTCTHHHHHHHTTCEEEE--ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred CCCeE---EEeCCCCcHHHHHHHHCCCeEEE--EECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 44555 99999999999999999999999 55644555444322 2368899999
Q ss_pred CcCCCCC-CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec-ccc-------cchHHHHHHHHHHcCCe
Q 047630 290 QRLPFFD-NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF-CVG-------AQLEDVYVPLIESVGFN 360 (392)
Q Consensus 290 ~~Lpf~d-~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~-~~~-------~~l~~~l~~ll~~aGf~ 360 (392)
..+++.+ ++||+|++..+++++ +++....+++++.|+|||||+|++..+. ... .-..+++.++++. +|+
T Consensus 143 ~~l~~~~~~~FD~V~~~~~l~~l-~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~ 220 (252)
T 2gb4_A 143 FDLPRANIGKFDRIWDRGALVAI-NPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCS 220 (252)
T ss_dssp TTGGGGCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEE
T ss_pred ccCCcccCCCEEEEEEhhhhhhC-CHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeE
Confidence 9998865 899999999999875 5566678999999999999999755432 111 0125678888887 599
Q ss_pred EEEEEEee
Q 047630 361 KLKWVVGR 368 (392)
Q Consensus 361 ~i~w~~~~ 368 (392)
++.+....
T Consensus 221 v~~~~~~~ 228 (252)
T 2gb4_A 221 MQCLEEVD 228 (252)
T ss_dssp EEEEEEEE
T ss_pred EEEEeccc
Confidence 98887554
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-15 Score=137.69 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=95.4
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+.++.+| ||||||+|.++..+++. +..++++| ++..+.+.+. +.+ .+.+.++|+..+++ +++||+|
T Consensus 34 ~~~~~~V---LDiGcG~G~~~~~la~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V 107 (256)
T 1nkv_A 34 MKPGTRI---LDLGSGSGEMLCTWARDHGITGTGID--MSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVA 107 (256)
T ss_dssp CCTTCEE---EEETCTTCHHHHHHHHHTCCEEEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEE
T ss_pred CCCCCEE---EEECCCCCHHHHHHHHhcCCeEEEEe--CCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEE
Confidence 3344445 99999999999999985 77888854 5444444332 233 37889999999988 8899999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc------------------chHHHHHHHHHHcCCeEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------------------QLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------------------~l~~~l~~ll~~aGf~~i~w 364 (392)
++..+++++.+ ...+|+++.|+|||||++++.+...... ...+.+.++++++||+.+..
T Consensus 108 ~~~~~~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 108 ACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp EEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EECCChHhcCC---HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 99999988743 4569999999999999999876432111 01466899999999998875
Q ss_pred EE
Q 047630 365 VV 366 (392)
Q Consensus 365 ~~ 366 (392)
..
T Consensus 185 ~~ 186 (256)
T 1nkv_A 185 VL 186 (256)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-14 Score=130.10 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=103.7
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc----C-------CccEEEeccCcCCCC
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR----G-------VVPLYISISQRLPFF 295 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r----g-------~i~~~~~d~~~Lpf~ 295 (392)
+...++.+| ||||||+|.++..+++.+ ..++++| ++....+.+.++ + .+.++.+|...+++.
T Consensus 25 l~~~~~~~v---LDiGcG~G~~~~~l~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (219)
T 3jwg_A 25 LKSVNAKKV---IDLGCGEGNLLSLLLKDKSFEQITGVD--VSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKR 99 (219)
T ss_dssp HHHTTCCEE---EEETCTTCHHHHHHHTSTTCCEEEEEE--SCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGG
T ss_pred HhhcCCCEE---EEecCCCCHHHHHHHhcCCCCEEEEEE--CCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccc
Confidence 333444555 999999999999999976 5788855 534444443332 1 478899999888888
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc----------------------ccchHHHHHHH
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV----------------------GAQLEDVYVPL 353 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~----------------------~~~l~~~l~~l 353 (392)
+++||+|++..+++|+ ++..+..+++++.|+|||||++++...... .+++.+.+.++
T Consensus 100 ~~~fD~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 178 (219)
T 3jwg_A 100 FSGYDAATVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKV 178 (219)
T ss_dssp GTTCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHH
T ss_pred cCCCCEEEEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHH
Confidence 8999999999999996 555567899999999999997776643211 11122333388
Q ss_pred HHHcCCeEEEEEEeeccCCCCcccceeeEEEEEcC
Q 047630 354 IESVGFNKLKWVVGRKLDRGPELREMYLSALLEKP 388 (392)
Q Consensus 354 l~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp 388 (392)
++++||++....++.. . ...+...-.+++.|-
T Consensus 179 ~~~~Gf~v~~~~~g~~-~--~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 179 AEKYGYSVRFLQIGEI-D--DEFGSPTQMGVFTLG 210 (219)
T ss_dssp HHHHTEEEEEEEESCC-C--TTSCCSEEEEEEEEC
T ss_pred HHHCCcEEEEEecCCc-c--ccCCCCeEEEEEecc
Confidence 9999997765544432 2 123332335788875
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=131.50 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=83.3
Q ss_pred HHHHHHHHHhhC-CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C-CccEEEeccCcCCC
Q 047630 221 LDFSIDEVLATK-KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRLPF 294 (392)
Q Consensus 221 ~~~lI~~ll~l~-~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~Lpf 294 (392)
...+++.+.... ++.+ |||+|||+|.++..+++. ..++++| ++..+.+.+.++ + .+.++++|...+++
T Consensus 20 ~~~~~~~~~~~~~~~~~---vLdiG~G~G~~~~~l~~~-~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 93 (243)
T 3d2l_A 20 YPEWVAWVLEQVEPGKR---IADIGCGTGTATLLLADH-YEVTGVD--LSEEMLEIAQEKAMETNRHVDFWVQDMRELEL 93 (243)
T ss_dssp HHHHHHHHHHHSCTTCE---EEEESCTTCHHHHHHTTT-SEEEEEE--SCHHHHHHHHHHHHHTTCCCEEEECCGGGCCC
T ss_pred HHHHHHHHHHHcCCCCe---EEEecCCCCHHHHHHhhC-CeEEEEE--CCHHHHHHHHHhhhhcCCceEEEEcChhhcCC
Confidence 344455555433 3344 499999999999999988 7888855 534444433322 2 47889999988887
Q ss_pred CCCcccEEEEcc-cccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 295 FDNTLDIVHSMH-VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 295 ~d~sFDlV~s~~-~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+ ++||+|++.. +++|+.+......+++++.++|||||+++++
T Consensus 94 ~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 94 P-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp S-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 6 7899999986 8888767778889999999999999999874
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=138.39 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=85.1
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----------CCccEEEeccCcC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQRL 292 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~L 292 (392)
..+..++...++.+| ||||||+|.++..+++.+..++|+| ++..+.+.+.++ ..+.+..++...+
T Consensus 47 ~~l~~~l~~~~~~~v---LDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~ 121 (293)
T 3thr_A 47 AWLLGLLRQHGCHRV---LDVACGTGVDSIMLVEEGFSVTSVD--ASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL 121 (293)
T ss_dssp HHHHHHHHHTTCCEE---EETTCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred HHHHHHhcccCCCEE---EEecCCCCHHHHHHHHCCCeEEEEE--CCHHHHHHHHHhhhhcccccccceeeEeecChhhC
Confidence 344444545555555 9999999999999999999999855 434444433321 1256788888888
Q ss_pred C---CCCCcccEEEEc-ccccccCC----chhHHHHHHHHHHcccCCcEEEEEe
Q 047630 293 P---FFDNTLDIVHSM-HVLSNWIP----TTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 293 p---f~d~sFDlV~s~-~~l~~~~~----~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+ +++++||+|++. .+++|+.+ .+....++++++|+|||||+|++..
T Consensus 122 ~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 122 DKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp HHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7 889999999998 89999755 4557889999999999999998774
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=138.72 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=97.8
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCC-CCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLP-FFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lp-f~d~sFDlV~s~~~l~~ 310 (392)
.|||||||+|.++..+++.+..++++| ++..+.+.+.++ + .+.++++|...++ +.+++||+|++..+++|
T Consensus 71 ~vLDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 148 (285)
T 4htf_A 71 RVLDAGGGEGQTAIKMAERGHQVILCD--LSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEW 148 (285)
T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGG
T ss_pred EEEEeCCcchHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhc
Confidence 459999999999999999999999955 434444433332 2 3678999999887 78899999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccc------------------------------cchHHHHHHHHHHcCCe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------------------------AQLEDVYVPLIESVGFN 360 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------------------------------~~l~~~l~~ll~~aGf~ 360 (392)
+. +...+++++.|+|||||++++..+.... .-..+++.++++++||+
T Consensus 149 ~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 225 (285)
T 4htf_A 149 VA---DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQ 225 (285)
T ss_dssp CS---CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCE
T ss_pred cc---CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCc
Confidence 73 3457999999999999999988752111 00156799999999999
Q ss_pred EEEEEEee
Q 047630 361 KLKWVVGR 368 (392)
Q Consensus 361 ~i~w~~~~ 368 (392)
++.+....
T Consensus 226 v~~~~~~~ 233 (285)
T 4htf_A 226 IMGKTGVR 233 (285)
T ss_dssp EEEEEEES
T ss_pred eeeeeeEE
Confidence 99887653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-15 Score=137.75 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=95.0
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||||||+|.++..+++.+. .++++| ++....+.+. +.+ .+.++++|...+|+++++||+|++..+++|
T Consensus 49 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 126 (257)
T 3f4k_A 49 KIADIGCGTGGQTLFLADYVKGQITGID--LFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYN 126 (257)
T ss_dssp EEEEETCTTSHHHHHHHHHCCSEEEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCC
T ss_pred eEEEeCCCCCHHHHHHHHhCCCeEEEEE--CCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhh
Confidence 349999999999999999765 888855 4344444332 223 278899999999999999999999999988
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-----------------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-----------------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-----------------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+ + ...+++++.|+|||||++++.+...... ...+.+.++++++||+.+.....
T Consensus 127 ~-~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 196 (257)
T 3f4k_A 127 I-G---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFIL 196 (257)
T ss_dssp C-C---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEEC
T ss_pred c-C---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 6 3 4579999999999999999987431111 01456889999999999986544
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=143.52 Aligned_cols=111 Identities=13% Similarity=0.089 Sum_probs=86.5
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccE
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDl 301 (392)
+.+++.+....+.. ..|||||||+|.++..|++.+.+|+|+ |++..+.+.+.++..+.+.+++++.+|+++++||+
T Consensus 27 ~~l~~~l~~~~~~~--~~vLDvGcGtG~~~~~l~~~~~~v~gv--D~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~ 102 (257)
T 4hg2_A 27 RALFRWLGEVAPAR--GDALDCGCGSGQASLGLAEFFERVHAV--DPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDV 102 (257)
T ss_dssp HHHHHHHHHHSSCS--SEEEEESCTTTTTHHHHHTTCSEEEEE--ESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEE
T ss_pred HHHHHHHHHhcCCC--CCEEEEcCCCCHHHHHHHHhCCEEEEE--eCcHHhhhhhhhcCCceeehhhhhhhcccCCcccE
Confidence 44556665554322 234999999999999999999999994 55444444444444589999999999999999999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
|++..++|++ + .+.++++++|+|||||+|++..+.
T Consensus 103 v~~~~~~h~~-~---~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 103 AIAAQAMHWF-D---LDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp EEECSCCTTC-C---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEeeehhHh-h---HHHHHHHHHHHcCCCCEEEEEECC
Confidence 9999999664 4 346999999999999999887654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=143.03 Aligned_cols=123 Identities=15% Similarity=0.043 Sum_probs=97.8
Q ss_pred EEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||+|||+|.++..+++. +..++++| ++....+.+.+ .+ .+.++++|+..+|+++++||+|++..++++
T Consensus 120 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 197 (312)
T 3vc1_A 120 TLVDAGCGRGGSMVMAHRRFGSRVEGVT--LSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMY 197 (312)
T ss_dssp EEEEESCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGG
T ss_pred EEEEecCCCCHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhh
Confidence 3499999999999999997 88999855 43444443332 33 378999999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccc-------------------hHHHHHHHHHHcCCeEEEEEEe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ-------------------LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~-------------------l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+ + ...+++++.|+|||||++++.+....... ..+++.++++++||+.+.....
T Consensus 198 ~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 198 V-D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp S-C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred C-C---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence 7 3 56799999999999999998875332210 1567899999999999988754
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=134.33 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=102.1
Q ss_pred HHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhcC---CccEEEeccCcCCCCCCccc
Q 047630 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASRG---VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 225 I~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~rg---~i~~~~~d~~~Lpf~d~sFD 300 (392)
+..++...++.+| ||||||+|.++..+++.+. .++++| ++....+.+.++. .+.+.++|...+++++++||
T Consensus 35 l~~~~~~~~~~~v---LdiG~G~G~~~~~l~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 35 LRAMLPEVGGLRI---VDLGCGFGWFCRWAHEHGASYVLGLD--LSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHSCCCTTCEE---EEETCTTCHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHHhccccCCCEE---EEEcCcCCHHHHHHHHCCCCeEEEEc--CCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 4444433344444 9999999999999999888 888855 5345555554442 36788999999998889999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc--------------------cc----------------
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV--------------------GA---------------- 344 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~--------------------~~---------------- 344 (392)
+|++..+++++. +...+++++.++|||||++++...... ..
T Consensus 110 ~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
T 3bkw_A 110 LAYSSLALHYVE---DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG 186 (243)
T ss_dssp EEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred EEEEeccccccc---hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence 999999999873 456799999999999999988753100 00
Q ss_pred -----chHHHHHHHHHHcCCeEEEEEEe
Q 047630 345 -----QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 345 -----~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
...+++.++++++||+.+.+...
T Consensus 187 ~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 02567999999999999988754
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.8e-15 Score=137.88 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=95.8
Q ss_pred EEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
+|||||||+|.++..+++.+ ..++++| ++....+.+.+ .+ .+.++++|...+++++++||+|++..++++
T Consensus 49 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 126 (267)
T 3kkz_A 49 LIADIGCGTGGQTMVLAGHVTGQVTGLD--FLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYN 126 (267)
T ss_dssp EEEEETCTTCHHHHHHHTTCSSEEEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGG
T ss_pred EEEEeCCCCCHHHHHHHhccCCEEEEEe--CCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCcee
Confidence 34999999999999999974 4888855 53444443322 23 378999999999999999999999999988
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-----------------chHHHHHHHHHHcCCeEEEEEEee
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-----------------QLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-----------------~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+ + ...+++++.|+|||||++++.+...... ...+.+.++++++||+.+......
T Consensus 127 ~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 127 I-G---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp T-C---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred c-C---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence 6 3 3569999999999999999987531111 014568899999999999887543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=130.23 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=96.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCccc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFD 300 (392)
.+.+++.+....++.+| ||||||+|.++..++ ..++++|++. . .+.+.+++...+++++++||
T Consensus 55 ~~~~~~~l~~~~~~~~v---LDiG~G~G~~~~~l~---~~v~~~D~s~--~---------~~~~~~~d~~~~~~~~~~fD 117 (215)
T 2zfu_A 55 VDRIARDLRQRPASLVV---ADFGCGDCRLASSIR---NPVHCFDLAS--L---------DPRVTVCDMAQVPLEDESVD 117 (215)
T ss_dssp HHHHHHHHHTSCTTSCE---EEETCTTCHHHHHCC---SCEEEEESSC--S---------STTEEESCTTSCSCCTTCEE
T ss_pred HHHHHHHHhccCCCCeE---EEECCcCCHHHHHhh---ccEEEEeCCC--C---------CceEEEeccccCCCCCCCEe
Confidence 44566655544444556 999999999998874 6788866655 2 36899999999999999999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+|++..++|+ .+...+++++.++|||||.+++.++..... ..+.+.++++++||+.+...
T Consensus 118 ~v~~~~~l~~----~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~-~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 118 VAVFCLSLMG----TNIRDFLEEANRVLKPGGLLKVAEVSSRFE-DVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp EEEEESCCCS----SCHHHHHHHHHHHEEEEEEEEEEECGGGCS-CHHHHHHHHHHTTEEEEEEE
T ss_pred EEEEehhccc----cCHHHHHHHHHHhCCCCeEEEEEEcCCCCC-CHHHHHHHHHHCCCEEEEEe
Confidence 9999999963 345679999999999999999987654332 34568999999999988744
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=135.21 Aligned_cols=123 Identities=14% Similarity=0.153 Sum_probs=94.0
Q ss_pred EEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||||||+|.++..+++ .+..++++| ++....+.+.++ + .+.+..+|...+| ++||+|++..+++|
T Consensus 67 ~vLDiGcG~G~~~~~l~~~~~~~v~gvd--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~ 141 (287)
T 1kpg_A 67 TLLDVGCGWGATMMRAVEKYDVNVVGLT--LSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEH 141 (287)
T ss_dssp EEEEETCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGG
T ss_pred EEEEECCcccHHHHHHHHHcCCEEEEEE--CCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhh
Confidence 349999999999999994 678888855 434444433332 2 3678888988776 78999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------------------------------chHHHHHHHHHHcCC
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------------------------------QLEDVYVPLIESVGF 359 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------------------------------~l~~~l~~ll~~aGf 359 (392)
+ ++.+...+++++.|+|||||++++.++..... ...+++.++++++||
T Consensus 142 ~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf 220 (287)
T 1kpg_A 142 F-GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGF 220 (287)
T ss_dssp T-CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTC
T ss_pred c-ChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCc
Confidence 6 33455689999999999999999887543210 015678899999999
Q ss_pred eEEEEEEe
Q 047630 360 NKLKWVVG 367 (392)
Q Consensus 360 ~~i~w~~~ 367 (392)
+.+.+...
T Consensus 221 ~~~~~~~~ 228 (287)
T 1kpg_A 221 TVTRVQSL 228 (287)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99998754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.7e-15 Score=140.46 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=98.3
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc---------CCccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR---------GVVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r---------g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
|||||||+|.++..+++.+..++++| ++..+.+.+.++ ..+.++++|+..+++ +++||+|++.....+
T Consensus 86 vLDlGcG~G~~~~~l~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~ 162 (299)
T 3g2m_A 86 VLELAAGMGRLTFPFLDLGWEVTALE--LSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSIN 162 (299)
T ss_dssp EEEETCTTTTTHHHHHTTTCCEEEEE--SCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHT
T ss_pred EEEEeccCCHHHHHHHHcCCeEEEEE--CCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccc
Confidence 49999999999999999999999955 434444433332 237899999999987 789999998755555
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------------------------------------------
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA---------------------------------------------- 344 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~---------------------------------------------- 344 (392)
+.+++++..+|+++.|+|||||+|++..+.....
T Consensus 163 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (299)
T 3g2m_A 163 ELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPF 242 (299)
T ss_dssp TSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESCC--CCC
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEeccCCCCcE
Confidence 5677777899999999999999999876432110
Q ss_pred ---------chHHHHHHHHHHcCCeEEEEEEee
Q 047630 345 ---------QLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 345 ---------~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
-..+++.++++++||+++......
T Consensus 243 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 243 VVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp CEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 026779999999999999887554
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=133.93 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=98.0
Q ss_pred EEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHhcC------CccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIASRG------VVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~rg------~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.|||||||+|.++..+++.+ ..++++| ++..+.+.+.++. .+.++.+|...+++++++||+|++..+++++
T Consensus 82 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 159 (241)
T 2ex4_A 82 CALDCGAGIGRITKRLLLPLFREVDMVD--ITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL 159 (241)
T ss_dssp EEEEETCTTTHHHHHTTTTTCSEEEEEE--SCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred EEEEECCCCCHHHHHHHHhcCCEEEEEe--CCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhC
Confidence 45999999999999998874 4788854 5344444443331 2578899999999888899999999999886
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccc-----------cchHHHHHHHHHHcCCeEEEEEEee
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----------AQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----------~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
++..+..+++++.|+|||||++++.+..... ....+++.++++++||+.+++....
T Consensus 160 -~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 226 (241)
T 2ex4_A 160 -TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE 226 (241)
T ss_dssp -CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred -CHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence 4444568999999999999999997653221 0126679999999999999987554
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=133.84 Aligned_cols=129 Identities=10% Similarity=0.062 Sum_probs=100.3
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
+|||||||+|.++..+++.+..+++ +|++....+.+.++ + .+.++++|+..++ ++++||+|++..+++++
T Consensus 69 ~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 69 RALVPGCGGGHDVVAMASPERFVVG--LDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEETCTTCHHHHHHCBTTEEEEE--ECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTS
T ss_pred CEEEeCCCCCHHHHHHHhCCCeEEE--EECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcC
Confidence 4599999999999999998888888 55544444433332 1 2688999998877 45699999999999885
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------chHHHHHHHHHHcCCeEEEEEEeeccC
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------QLEDVYVPLIESVGFNKLKWVVGRKLD 371 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------~l~~~l~~ll~~aGf~~i~w~~~~k~d 371 (392)
+++....+++++.++|||||+|++..+..... -..+++.++++++||+.+........-
T Consensus 146 -~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 211 (235)
T 3lcc_A 146 -EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENPHAI 211 (235)
T ss_dssp -CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECTTCC
T ss_pred -CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecCCcc
Confidence 55677889999999999999999887643221 125679999999999999888666433
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=129.96 Aligned_cols=145 Identities=13% Similarity=0.148 Sum_probs=100.8
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
..|||+|||+|.++..+++.+..++++| ++..+.+.+.++ +.+.++++|+..++ ++++||+|++..+++|+.+
T Consensus 53 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 129 (216)
T 3ofk_A 53 SNGLEIGCAAGAFTEKLAPHCKRLTVID--VMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLED 129 (216)
T ss_dssp EEEEEECCTTSHHHHHHGGGEEEEEEEE--SCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSS
T ss_pred CcEEEEcCCCCHHHHHHHHcCCEEEEEE--CCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCC
Confidence 4459999999999999999988888855 534444444433 24789999999988 6889999999999999877
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeecccc------cchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEc
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------AQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~------~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~K 387 (392)
.+.+..+++++.++|||||++++....... ....+.+..++.+. +..++...... ....+-++..+++|
T Consensus 130 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~----~~~~~d~~l~~~~~ 204 (216)
T 3ofk_A 130 MTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEA-LTEVERVQCQG----QSADEDCLLARFRN 204 (216)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHH-SEEEEEEEEEC----SSTTCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhh-ccceEEEeccC----CccccchhHHHHhC
Confidence 777778999999999999999997642210 11133344455442 55544322211 12234445588999
Q ss_pred CCC
Q 047630 388 PFL 390 (392)
Q Consensus 388 p~~ 390 (392)
|..
T Consensus 205 ~~~ 207 (216)
T 3ofk_A 205 PER 207 (216)
T ss_dssp CC-
T ss_pred Ccc
Confidence 864
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=131.43 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=78.8
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCCCCcccEEEEcc-cccccCCchh
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFFDNTLDIVHSMH-VLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~-~l~~~~~~~~ 316 (392)
.|||+|||+|.++..+++.+..++++| ++..+.+.+.++ ..+.++.+|...+++ +++||+|+|.. +++|+.+.++
T Consensus 43 ~vLdiG~G~G~~~~~l~~~~~~v~~~D--~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~ 119 (239)
T 3bxo_A 43 SLLDVACGTGTHLEHFTKEFGDTAGLE--LSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEE 119 (239)
T ss_dssp EEEEETCTTSHHHHHHHHHHSEEEEEE--SCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHH
T ss_pred eEEEecccCCHHHHHHHHhCCcEEEEe--CCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHH
Confidence 349999999999999999888888844 544555544444 247899999998887 78999999755 8888766677
Q ss_pred HHHHHHHHHHcccCCcEEEEEe
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~ 338 (392)
...+++++.++|||||.+++..
T Consensus 120 ~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 120 LGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp HHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCeEEEEEe
Confidence 8899999999999999998874
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-15 Score=140.84 Aligned_cols=144 Identities=12% Similarity=0.122 Sum_probs=107.7
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHH-H--cCCEEEEEecCCCchhHHHHHhc----CC---ccEEEeccCcCCCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMM-E--RNITIVTTSMNLNGPFNNFIASR----GV---VPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La-~--~g~~vvg~~iD~~a~~~~~aa~r----g~---i~~~~~d~~~Lpf~d~sFD 300 (392)
+.++.+| ||||||+|.++..++ . .+..++++| ++....+.+.++ +. +.++++|+..++++ ++||
T Consensus 116 l~~~~~v---LDiGcG~G~~~~~la~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 189 (305)
T 3ocj_A 116 LRPGCVV---ASVPCGWMSELLALDYSACPGVQLVGID--YDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYD 189 (305)
T ss_dssp CCTTCEE---EETTCTTCHHHHTSCCTTCTTCEEEEEE--SCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEE
T ss_pred CCCCCEE---EEecCCCCHHHHHHHHhcCCCCeEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeE
Confidence 3455555 999999999999985 2 366888855 534444433322 22 78899999999987 9999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc--------------c---------------------c
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG--------------A---------------------Q 345 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~--------------~---------------------~ 345 (392)
+|++..+++|+.++.....+++++.|+|||||+|++.++.... . .
T Consensus 190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
T 3ocj_A 190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALR 269 (305)
T ss_dssp EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCC
T ss_pred EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccC
Confidence 9999999999877777677999999999999999998743210 0 1
Q ss_pred hHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEcC
Q 047630 346 LEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKP 388 (392)
Q Consensus 346 l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp 388 (392)
..+++.++++++||+.++.... ....+..++.+||
T Consensus 270 ~~~~~~~~l~~aGF~~v~~~~~--------~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 270 THAQTRAQLEEAGFTDLRFEDD--------RARLFPTVIARKP 304 (305)
T ss_dssp CHHHHHHHHHHTTCEEEEEECC--------TTSSSCEEEEECC
T ss_pred CHHHHHHHHHHCCCEEEEEEcc--------cCceeeEEEEecC
Confidence 2567999999999999987731 2234456788887
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=135.75 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=99.9
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
+...++.+| ||||||+|.++..+++.+..++++| ++..+.+.+.++ ..+.+.++|+..+++ +++||+|++..+
T Consensus 53 l~~~~~~~v---LDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~ 126 (279)
T 3ccf_A 53 LNPQPGEFI---LDLGCGTGQLTEKIAQSGAEVLGTD--NAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAM 126 (279)
T ss_dssp HCCCTTCEE---EEETCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESC
T ss_pred hCCCCCCEE---EEecCCCCHHHHHHHhCCCeEEEEE--CCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcch
Confidence 334444455 9999999999999999888999854 544555555444 247899999999987 689999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc---------------------------cchHHHHHHHHHHcCCe
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------------------------AQLEDVYVPLIESVGFN 360 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------------------------~~l~~~l~~ll~~aGf~ 360 (392)
++++. +...+++++.|+|||||++++....... -...+.+.++++++||+
T Consensus 127 l~~~~---d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 203 (279)
T 3ccf_A 127 LHWVK---EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFD 203 (279)
T ss_dssp GGGCS---CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEE
T ss_pred hhhCc---CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCE
Confidence 99873 4457999999999999999987653211 00145688999999999
Q ss_pred EEEEEEee
Q 047630 361 KLKWVVGR 368 (392)
Q Consensus 361 ~i~w~~~~ 368 (392)
.+.+....
T Consensus 204 ~~~~~~~~ 211 (279)
T 3ccf_A 204 VTYAALFN 211 (279)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 98876443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=133.11 Aligned_cols=121 Identities=14% Similarity=0.206 Sum_probs=93.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-----CCccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-----GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
.|||+|||+|.++..+++.+..++++| ++..+.+.+.++ ..+.+.++|...+++++++||+|++..+++++.
T Consensus 42 ~vLDiG~G~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 118 (263)
T 2yqz_A 42 VFLELGVGTGRIALPLIARGYRYIALD--ADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVP- 118 (263)
T ss_dssp EEEEETCTTSTTHHHHHTTTCEEEEEE--SCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCT-
T ss_pred EEEEeCCcCCHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhcC-
Confidence 349999999999999999998998855 544555544443 247889999999999999999999999998873
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeeccc--cc-------------------------chHHHHHHHHHHcCCeEEEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCV--GA-------------------------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~--~~-------------------------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+...+++++.|+|||||.+++. +... .. ...+.+.++++++||+.+.+.
T Consensus 119 --~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 194 (263)
T 2yqz_A 119 --DWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTRE 194 (263)
T ss_dssp --THHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred --CHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceEE
Confidence 4567999999999999999887 2211 00 014557788999999877654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=137.89 Aligned_cols=149 Identities=11% Similarity=0.088 Sum_probs=100.2
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc-----------------------------------CCc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR-----------------------------------GVV 282 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r-----------------------------------g~i 282 (392)
+|||||||+|.++..++..+. .|+|+| ++..+.+.+.++ ..+
T Consensus 58 ~vLDiGCG~G~~~~~~~~~~~~~v~g~D--~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 135 (263)
T 2a14_A 58 TLIDIGSGPTIYQVLAACDSFQDITLSD--FTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV 135 (263)
T ss_dssp EEEESSCTTCCGGGTTGGGTEEEEEEEE--SCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHE
T ss_pred eEEEeCCCccHHHHHHHHhhhcceeecc--ccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhh
Confidence 459999999999888888776 588855 533333322211 002
Q ss_pred c-EEEeccCc-CCC---CCCcccEEEEcccccccC-CchhHHHHHHHHHHcccCCcEEEEEeecccc-----c-------
Q 047630 283 P-LYISISQR-LPF---FDNTLDIVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----A------- 344 (392)
Q Consensus 283 ~-~~~~d~~~-Lpf---~d~sFDlV~s~~~l~~~~-~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----~------- 344 (392)
. ++++|+.. .|+ ..++||+|++++++|+.. +.++...++++++|+|||||+|++....... .
T Consensus 136 ~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~ 215 (263)
T 2a14_A 136 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVA 215 (263)
T ss_dssp EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCC
T ss_pred heEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccc
Confidence 2 77888776 344 367999999999998853 3466778999999999999999998643221 0
Q ss_pred chHHHHHHHHHHcCCeEEEEEEeec-cCCCCcccceeeEEEEEcCC
Q 047630 345 QLEDVYVPLIESVGFNKLKWVVGRK-LDRGPELREMYLSALLEKPF 389 (392)
Q Consensus 345 ~l~~~l~~ll~~aGf~~i~w~~~~k-~d~~~~~~e~ylsai~~Kp~ 389 (392)
-..+++.++++++||+.+.+..... ........+.++.++.+|+.
T Consensus 216 ~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 261 (263)
T 2a14_A 216 LEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 261 (263)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred cCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence 0256799999999999998876532 11111111223346888874
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=128.32 Aligned_cols=132 Identities=19% Similarity=0.276 Sum_probs=101.4
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEE
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
.++.+..+.++.+| ||+|||+|.++..+++. ++ +|++....+.+.+++ +.++.++...+++++++||+|+
T Consensus 38 ~~~~l~~~~~~~~v---LDiG~G~G~~~~~l~~~----~~--vD~s~~~~~~a~~~~-~~~~~~d~~~~~~~~~~fD~v~ 107 (219)
T 1vlm_A 38 ELQAVKCLLPEGRG---VEIGVGTGRFAVPLKIK----IG--VEPSERMAEIARKRG-VFVLKGTAENLPLKDESFDFAL 107 (219)
T ss_dssp HHHHHHHHCCSSCE---EEETCTTSTTHHHHTCC----EE--EESCHHHHHHHHHTT-CEEEECBTTBCCSCTTCEEEEE
T ss_pred HHHHHHHhCCCCcE---EEeCCCCCHHHHHHHHH----hc--cCCCHHHHHHHHhcC-CEEEEcccccCCCCCCCeeEEE
Confidence 33444445555555 99999999999999876 55 566455555665554 7899999999999889999999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--------------------chHHHHHHHHHHcCCeEEE
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------------------QLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------------------~l~~~l~~ll~~aGf~~i~ 363 (392)
+..+++++ .+...+++++.++|||||.+++........ -..+++.++++++||+.++
T Consensus 108 ~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 184 (219)
T 1vlm_A 108 MVTTICFV---DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184 (219)
T ss_dssp EESCGGGS---SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred EcchHhhc---cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence 99999987 334579999999999999999986532110 1256799999999999988
Q ss_pred EEEee
Q 047630 364 WVVGR 368 (392)
Q Consensus 364 w~~~~ 368 (392)
.....
T Consensus 185 ~~~~~ 189 (219)
T 1vlm_A 185 VVQTL 189 (219)
T ss_dssp EEEEC
T ss_pred Eeccc
Confidence 77553
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.1e-14 Score=126.68 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=103.3
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C-CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
.|||+|||+|.++..+++.+..+++ +|++....+.+.++ + .+.+..+|+..+++++++||+|++.. .++ .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~-~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTA--VDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHL-P 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEE--ECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCC-C
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEE--EECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcC-C
Confidence 3499999999999999999999988 55544444433322 2 36788899999998889999999964 343 4
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeeccccc-------------chHHHHHHHHHHcCCeEEEEEEeeccCC-CC--ccc
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------------QLEDVYVPLIESVGFNKLKWVVGRKLDR-GP--ELR 377 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------------~l~~~l~~ll~~aGf~~i~w~~~~k~d~-~~--~~~ 377 (392)
......+++++.++|||||++++..+..... -..+++.++++ ||+++.......... +. ...
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g~~~~~~ 184 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEGAYHQGK 184 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCSSSSCCE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCCCCcccH
Confidence 5667889999999999999999997643211 11667888888 999998776654321 11 122
Q ss_pred ceeeEEEEEcCCCC
Q 047630 378 EMYLSALLEKPFLD 391 (392)
Q Consensus 378 e~ylsai~~Kp~~~ 391 (392)
..++....+|+..+
T Consensus 185 ~~~i~~~~~~~~~~ 198 (202)
T 2kw5_A 185 AALIQLLGQKLEHH 198 (202)
T ss_dssp EEEEEEEECCCSSC
T ss_pred HHHHHHHHHhhhhc
Confidence 34445555665543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.1e-14 Score=127.12 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=101.9
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-----CCccEEEeccCcCCCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-----GVVPLYISISQRLPFF 295 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-----g~i~~~~~d~~~Lpf~ 295 (392)
.+.+++.+....+. -.+|||+|||+|.++..+++.+..++++|++ ....+.+.++ ..+.++++|...++++
T Consensus 25 ~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 100 (227)
T 1ve3_A 25 IETLEPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFEVVGVDIS--EDMIRKAREYAKSRESNVEFIVGDARKLSFE 100 (227)
T ss_dssp HHHHHHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCCEEEECCTTSCCSC
T ss_pred HHHHHHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHhcCCCceEEECchhcCCCC
Confidence 34455555543322 2344999999999999999998888885543 3444433322 3478999999999888
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc------------------c---c---------c
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV------------------G---A---------Q 345 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~------------------~---~---------~ 345 (392)
+++||+|++..++++ ....+...+++++.++|||||.+++.+.... . . +
T Consensus 101 ~~~~D~v~~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (227)
T 1ve3_A 101 DKTFDYVIFIDSIVH-FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIE 179 (227)
T ss_dssp TTCEEEEEEESCGGG-CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEE
T ss_pred CCcEEEEEEcCchHh-CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEE
Confidence 899999999998544 2335667899999999999999988754200 0 0 0
Q ss_pred --------------hHHHHHHHHHHcCCeEEEEEEe
Q 047630 346 --------------LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 346 --------------l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
...++.++++++||+.++....
T Consensus 180 ~~~~~~~~~~~~~~w~~~~~~~l~~~GF~~v~~~~~ 215 (227)
T 1ve3_A 180 FKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKV 215 (227)
T ss_dssp C-----CCEEEEECCCHHHHHHHHTTTEEEEEEEEE
T ss_pred eccchhhheeehhhhchHHHHHHHHHhhhHHHHHHh
Confidence 0156899999999999988743
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=138.45 Aligned_cols=137 Identities=12% Similarity=0.134 Sum_probs=98.3
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhc----C-CccEEEeccCcCC
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRLP 293 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~Lp 293 (392)
+.+++.+..+.++.+| ||||||+|.++..+++. +..++++| ++....+.+.++ + .+.+.++|+..++
T Consensus 11 ~~~~~~~~~~~~~~~v---LDiGcG~G~~~~~l~~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 85 (284)
T 3gu3_A 11 SFLVNTVWKITKPVHI---VDYGCGYGYLGLVLMPLLPEGSKYTGID--SGETLLAEARELFRLLPYDSEFLEGDATEIE 85 (284)
T ss_dssp HHHHHTTSCCCSCCEE---EEETCTTTHHHHHHTTTSCTTCEEEEEE--SCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred HHHHHHHhccCCCCeE---EEecCCCCHHHHHHHHhCCCCCEEEEEE--CCHHHHHHHHHHHHhcCCceEEEEcchhhcC
Confidence 3444444444444455 99999999999999986 57888855 433444433322 2 3788999999998
Q ss_pred CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec---------cccc--------------------
Q 047630 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF---------CVGA-------------------- 344 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~---------~~~~-------------------- 344 (392)
+ +++||+|++..+++++. +...++++++|+|||||++++.+.. ....
T Consensus 86 ~-~~~fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (284)
T 3gu3_A 86 L-NDKYDIAICHAFLLHMT---TPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQ 161 (284)
T ss_dssp C-SSCEEEEEEESCGGGCS---SHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHH
T ss_pred c-CCCeeEEEECChhhcCC---CHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhh
Confidence 8 46999999999999973 3457999999999999999887643 0000
Q ss_pred ------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 345 ------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 345 ------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
.....+.++++++||+.+.....
T Consensus 162 ~~~~~~~~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 162 RNGKDGNIGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp HTCCCTTGGGTHHHHHHHTTCEEEEEEEC
T ss_pred hhcccccHHHHHHHHHHHcCCCeEEEEEc
Confidence 01234678999999999987543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-14 Score=131.37 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=103.9
Q ss_pred cEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc---CC--------------------------------
Q 047630 238 RIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR---GV-------------------------------- 281 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r---g~-------------------------------- 281 (392)
..|||+|||+|.++..+++.+. .++++| ++..+.+.+.++ ..
T Consensus 58 ~~vLDlGcG~G~~~~~l~~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (265)
T 2i62_A 58 ELLIDIGSGPTIYQLLSACESFTEIIVSD--YTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA 135 (265)
T ss_dssp EEEEEESCTTCCGGGTTGGGTEEEEEEEE--SCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHhhcccCeEEEec--CCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence 4459999999999999999887 788855 534444433221 11
Q ss_pred c-cEEEeccCcCC-CCC---CcccEEEEcccccccCCc-hhHHHHHHHHHHcccCCcEEEEEeecccc------------
Q 047630 282 V-PLYISISQRLP-FFD---NTLDIVHSMHVLSNWIPT-TLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------ 343 (392)
Q Consensus 282 i-~~~~~d~~~Lp-f~d---~sFDlV~s~~~l~~~~~~-~~l~~~L~el~RvLKPGG~lii~~~~~~~------------ 343 (392)
+ .+.++|+...+ +++ ++||+|++..+++++.+. .....+++++.|+|||||+|++.......
T Consensus 136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 215 (265)
T 2i62_A 136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSL 215 (265)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccccc
Confidence 5 77888887764 355 899999999999854322 46678999999999999999988643210
Q ss_pred cchHHHHHHHHHHcCCeEEEEEEeec-cCCCCcccceeeEEEEEcCCC
Q 047630 344 AQLEDVYVPLIESVGFNKLKWVVGRK-LDRGPELREMYLSALLEKPFL 390 (392)
Q Consensus 344 ~~l~~~l~~ll~~aGf~~i~w~~~~k-~d~~~~~~e~ylsai~~Kp~~ 390 (392)
.-..+++.++++++||+.+.+..... .+.........+..+.+|+..
T Consensus 216 ~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~ 263 (265)
T 2i62_A 216 PLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGR 263 (265)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC-
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccccc
Confidence 01255799999999999999886652 111111112233468888754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-14 Score=128.73 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=94.8
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc----C-------CccEEEeccCcCCCC
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR----G-------VVPLYISISQRLPFF 295 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r----g-------~i~~~~~d~~~Lpf~ 295 (392)
+...++.+| ||||||+|.++..+++.+ ..++++| ++....+.+.++ + .+.++++|+...++.
T Consensus 25 l~~~~~~~v---LDiGcG~G~~~~~l~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (217)
T 3jwh_A 25 LKQSNARRV---IDLGCGQGNLLKILLKDSFFEQITGVD--VSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR 99 (217)
T ss_dssp HHHTTCCEE---EEETCTTCHHHHHHHHCTTCSEEEEEE--SCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG
T ss_pred HHhcCCCEE---EEeCCCCCHHHHHHHhhCCCCEEEEEE--CCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc
Confidence 334444555 999999999999999976 5788855 534444443332 1 478889998888888
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc----------------------cccchHHHHHHH
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC----------------------VGAQLEDVYVPL 353 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~----------------------~~~~l~~~l~~l 353 (392)
+++||+|++..+++|+ ++..+..+++++.|+|||||++++..... ..+++.+.+.++
T Consensus 100 ~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 100 FHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp GCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHH
T ss_pred CCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHH
Confidence 8899999999999986 55566789999999999999887765321 111123333388
Q ss_pred HHHcCCeEEEEE
Q 047630 354 IESVGFNKLKWV 365 (392)
Q Consensus 354 l~~aGf~~i~w~ 365 (392)
++++||++....
T Consensus 179 ~~~~Gf~v~~~~ 190 (217)
T 3jwh_A 179 TERFAYNVQFQP 190 (217)
T ss_dssp HHHSSEEEEECC
T ss_pred HHHcCceEEEEe
Confidence 999999875543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-14 Score=132.79 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=107.3
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHH----HhcC-CccEEEeccCcCCCCC
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFI----ASRG-VVPLYISISQRLPFFD 296 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~a----a~rg-~i~~~~~d~~~Lpf~d 296 (392)
..+++. +...++.+| ||+|||+|.++..+++.+..++++|++ ....+.+ ...+ .+.++++|+..+++ +
T Consensus 110 ~~~~~~-~~~~~~~~v---LD~GcG~G~~~~~l~~~g~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~ 182 (286)
T 3m70_A 110 GDVVDA-AKIISPCKV---LDLGCGQGRNSLYLSLLGYDVTSWDHN--ENSIAFLNETKEKENLNISTALYDINAANI-Q 182 (286)
T ss_dssp HHHHHH-HHHSCSCEE---EEESCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCGGGCCC-C
T ss_pred HHHHHH-hhccCCCcE---EEECCCCCHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHHHcCCceEEEEeccccccc-c
Confidence 334433 334455666 999999999999999999999995544 3444322 2233 47888999998887 8
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------chHHHHHHHHHHcCCeEEEEEE
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------QLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
++||+|++..+++|+ ++..+..+++++.++|||||++++........ -..+++.+++.. |+.+.+..
T Consensus 183 ~~fD~i~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~ 259 (286)
T 3m70_A 183 ENYDFIVSTVVFMFL-NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNE 259 (286)
T ss_dssp SCEEEEEECSSGGGS-CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred CCccEEEEccchhhC-CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEc
Confidence 899999999999885 66667789999999999999987765433211 014456666655 88888753
Q ss_pred ee----ccCC-CCcccceeeEEEEEcC
Q 047630 367 GR----KLDR-GPELREMYLSALLEKP 388 (392)
Q Consensus 367 ~~----k~d~-~~~~~e~ylsai~~Kp 388 (392)
.. +.+. +....-.+...+.+||
T Consensus 260 ~~~~~~~~~~~g~~~~~~~~~l~arK~ 286 (286)
T 3m70_A 260 NMGELHKTDENGNRIKMKFATMLARKK 286 (286)
T ss_dssp CEEEEEEECSSCCEEEEEEEEEEEECC
T ss_pred cCCeeeeccCCCCEEEEEEEEEEEecC
Confidence 21 2221 2222223556788887
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=135.11 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=96.2
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCcccEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
.++.+| ||||||+|.++..+++. +..++++| ++....+.+.+ .+ .+.+..+|...+++++++||+|+
T Consensus 36 ~~~~~v---LDiG~G~G~~~~~l~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 110 (276)
T 3mgg_A 36 PPGAKV---LEAGCGIGAQTVILAKNNPDAEITSID--ISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIF 110 (276)
T ss_dssp CTTCEE---EETTCTTSHHHHHHHHHCTTSEEEEEE--SCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEE
T ss_pred CCCCeE---EEecCCCCHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEE
Confidence 344455 99999999999999997 67888855 53444443332 23 37889999999999999999999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc------c-c--------------------chHHHHHHHHHH
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV------G-A--------------------QLEDVYVPLIES 356 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~------~-~--------------------~l~~~l~~ll~~ 356 (392)
+..+++++.+ ...+++++.|+|||||++++.+.... . . .....+.+++++
T Consensus 111 ~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 187 (276)
T 3mgg_A 111 VCFVLEHLQS---PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQE 187 (276)
T ss_dssp EESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHH
T ss_pred EechhhhcCC---HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 9999999744 34699999999999999998763210 0 0 012457789999
Q ss_pred cCCeEEEEEEe
Q 047630 357 VGFNKLKWVVG 367 (392)
Q Consensus 357 aGf~~i~w~~~ 367 (392)
+||+.++....
T Consensus 188 aGf~~v~~~~~ 198 (276)
T 3mgg_A 188 SGFEKIRVEPR 198 (276)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCCeEEEeeE
Confidence 99999887744
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=141.72 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=96.2
Q ss_pred EEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhc--------------CCccEEEeccCcC------CCCC
Q 047630 240 GLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASR--------------GVVPLYISISQRL------PFFD 296 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~r--------------g~i~~~~~d~~~L------pf~d 296 (392)
|||||||+|.++..+++. +..++++| ++..+.+.+.++ ..+.++++|+..+ ++++
T Consensus 87 VLDlGcG~G~~~~~la~~~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~ 164 (383)
T 4fsd_A 87 VLDLGCGTGRDVYLASKLVGEHGKVIGVD--MLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPD 164 (383)
T ss_dssp EEEESCTTSHHHHHHHHHHTTTCEEEEEE--CCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCT
T ss_pred EEEecCccCHHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCC
Confidence 499999999999999884 55888855 544444444432 2478999999887 8999
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------------------chHHHHHHHHHHc
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------------------QLEDVYVPLIESV 357 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------------------~l~~~l~~ll~~a 357 (392)
++||+|++..+++++. +...++++++|+|||||+|++.++..... -..+++.++++++
T Consensus 165 ~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 241 (383)
T 4fsd_A 165 SSVDIVISNCVCNLST---NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEA 241 (383)
T ss_dssp TCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHT
T ss_pred CCEEEEEEccchhcCC---CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHC
Confidence 9999999999999873 34579999999999999999987644321 1136799999999
Q ss_pred CCeEEEEEEee
Q 047630 358 GFNKLKWVVGR 368 (392)
Q Consensus 358 Gf~~i~w~~~~ 368 (392)
||+.+++....
T Consensus 242 GF~~v~~~~~~ 252 (383)
T 4fsd_A 242 GFRDVRLVSVG 252 (383)
T ss_dssp TCCCEEEEEEE
T ss_pred CCceEEEEecc
Confidence 99988766544
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=132.74 Aligned_cols=124 Identities=11% Similarity=0.105 Sum_probs=96.1
Q ss_pred EEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||||||+|.++..+++. +..++++| ++....+.+.+ .+ .+.+..+|...+ +++||+|++..+++|
T Consensus 75 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~ 149 (302)
T 3hem_A 75 TLLDIGCGWGSTMRHAVAEYDVNVIGLT--LSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEH 149 (302)
T ss_dssp EEEEETCTTSHHHHHHHHHHCCEEEEEE--CCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGG
T ss_pred EEEEeeccCcHHHHHHHHhCCCEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHh
Confidence 3499999999999999997 88888855 53444443332 23 367889998876 789999999999999
Q ss_pred cCCc------hhHHHHHHHHHHcccCCcEEEEEeecccccc-------------------------------hHHHHHHH
Q 047630 311 WIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ-------------------------------LEDVYVPL 353 (392)
Q Consensus 311 ~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~-------------------------------l~~~l~~l 353 (392)
+.++ .....+++++.|+|||||++++..+...... ..+++.++
T Consensus 150 ~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~ 229 (302)
T 3hem_A 150 FADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYY 229 (302)
T ss_dssp TTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHH
T ss_pred cCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHH
Confidence 7554 5667899999999999999999886432211 14568899
Q ss_pred HHHcCCeEEEEEEe
Q 047630 354 IESVGFNKLKWVVG 367 (392)
Q Consensus 354 l~~aGf~~i~w~~~ 367 (392)
++++||+.+.+...
T Consensus 230 l~~aGf~~~~~~~~ 243 (302)
T 3hem_A 230 SSNAGWKVERYHRI 243 (302)
T ss_dssp HHHHTCEEEEEEEC
T ss_pred HHhCCcEEEEEEeC
Confidence 99999999988743
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.5e-14 Score=134.20 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=94.9
Q ss_pred EEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||||||+|.++..+++. +..++++| ++....+.+.++ + .+.+..+|...+| ++||+|++..+++|
T Consensus 93 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 93 TLLDIGCGWGTTMRRAVERFDVNVIGLT--LSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEH 167 (318)
T ss_dssp EEEEESCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGG
T ss_pred EEEEEcccchHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHh
Confidence 3499999999999999987 88998855 434444433332 3 3678888988775 78999999999988
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccc-------------------------------hHHHHHHHHHHcCC
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ-------------------------------LEDVYVPLIESVGF 359 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~-------------------------------l~~~l~~ll~~aGf 359 (392)
+ +..+...+++++.|+|||||++++.++...... ..+++.++++++||
T Consensus 168 ~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf 246 (318)
T 2fk8_A 168 F-GHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGF 246 (318)
T ss_dssp T-CGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTC
T ss_pred c-CHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCC
Confidence 5 445667899999999999999999876432210 15678899999999
Q ss_pred eEEEEEEe
Q 047630 360 NKLKWVVG 367 (392)
Q Consensus 360 ~~i~w~~~ 367 (392)
+.+.+...
T Consensus 247 ~~~~~~~~ 254 (318)
T 2fk8_A 247 TVPEPLSL 254 (318)
T ss_dssp BCCCCEEC
T ss_pred EEEEEEec
Confidence 99887653
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.8e-14 Score=126.56 Aligned_cols=124 Identities=10% Similarity=0.058 Sum_probs=95.5
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCc--CCCCCCcccEEEEcccccccCCchh
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR--LPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~--Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
.|||+|||+|.++..+++.+..++++ |++....+.+.++ ...+..+|+.. +++++++||+|++..+++|+.+
T Consensus 35 ~vLdiG~G~G~~~~~l~~~~~~~~~~--D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~--- 108 (230)
T 3cc8_A 35 EVLDIGCSSGALGAAIKENGTRVSGI--EAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD--- 108 (230)
T ss_dssp EEEEETCTTSHHHHHHHTTTCEEEEE--ESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSC---
T ss_pred cEEEeCCCCCHHHHHHHhcCCeEEEE--eCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCEEEECChhhhcCC---
Confidence 44999999999999999988888884 4534444444444 35788888876 6778899999999999999743
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecccc--------------------------cchHHHHHHHHHHcCCeEEEEEEee
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFCVG--------------------------AQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~~~--------------------------~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
...+++++.++|||||++++....... .-..+++.++++++||+.+......
T Consensus 109 ~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 109 PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEecc
Confidence 347999999999999999987632100 0126679999999999999887654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=137.55 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=91.6
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-------------------------------------
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR------------------------------------- 279 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r------------------------------------- 279 (392)
.|||||||+|.++..+++. +..++|+|+| ..+.+.+.++
T Consensus 49 ~VLDiGCG~G~~~~~la~~~~~~~v~gvDis--~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 49 DVLDLGCNVGHLTLSIACKWGPSRMVGLDID--SRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp EEEEESCTTCHHHHHHHHHTCCSEEEEEESC--HHHHHHHHHTC------------------------------------
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 3499999999999999996 6788885544 4444433332
Q ss_pred ---------------------------CCccEEEeccCcCC-----CCCCcccEEEEcccccccC---CchhHHHHHHHH
Q 047630 280 ---------------------------GVVPLYISISQRLP-----FFDNTLDIVHSMHVLSNWI---PTTLLHFLMFDI 324 (392)
Q Consensus 280 ---------------------------g~i~~~~~d~~~Lp-----f~d~sFDlV~s~~~l~~~~---~~~~l~~~L~el 324 (392)
..+.+.++|....+ +.+++||+|+|..++++++ .++.+..+++++
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~ 206 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRI 206 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHH
Confidence 23677788766543 5788999999999986653 556778999999
Q ss_pred HHcccCCcEEEEEeecc----c----ccch----------HHHHHHHHHH--cCCeEEEEEEe
Q 047630 325 YRVLRPGGLFWLDHFFC----V----GAQL----------EDVYVPLIES--VGFNKLKWVVG 367 (392)
Q Consensus 325 ~RvLKPGG~lii~~~~~----~----~~~l----------~~~l~~ll~~--aGf~~i~w~~~ 367 (392)
+++|||||+|++..... . .+.. ++.+.+++.+ +||+.++....
T Consensus 207 ~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 207 YRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999974211 0 0000 4557888888 99988876543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=128.51 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=93.2
Q ss_pred EEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 240 GLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
|||||||+|.++..+++. +..++++| ++..+.+.+.++ ..+.+.++|.+.++ ++++||+|++..+++++ .+
T Consensus 37 vLdiG~G~G~~~~~l~~~~~~~~v~~~D--~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~---~~ 110 (259)
T 2p35_A 37 GYDLGCGPGNSTELLTDRYGVNVITGID--SDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWV---PD 110 (259)
T ss_dssp EEEETCTTTHHHHHHHHHHCTTSEEEEE--SCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGS---TT
T ss_pred EEEecCcCCHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhC---CC
Confidence 499999999999999987 78898855 544555555444 24789999999988 78899999999999987 34
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecccc--------------------c---------chHHHHHHHHHHcCCeEEEEE
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFCVG--------------------A---------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~~~--------------------~---------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
...+++++.|+|||||++++....... . ...+.+.++++++||++..+.
T Consensus 111 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 188 (259)
T 2p35_A 111 HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRVDVWH 188 (259)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcCCceEEEE
Confidence 567999999999999999987642110 0 115668999999999765554
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-13 Score=124.66 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=75.0
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC-CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
.|||+|||+|.++..+++.+..++++| ++..+.+.+.+ .+ .+.++++|...++++ ++||+|++.....+..+
T Consensus 44 ~vLDlGcG~G~~~~~l~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~ 120 (252)
T 1wzn_A 44 RVLDLACGTGIPTLELAERGYEVVGLD--LHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFD 120 (252)
T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSC
T ss_pred EEEEeCCCCCHHHHHHHHCCCeEEEEE--CCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcCC
Confidence 459999999999999999999999855 43444443322 23 378899999888865 68999999865444456
Q ss_pred chhHHHHHHHHHHcccCCcEEEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
.+....+++++.++|||||.++++
T Consensus 121 ~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 121 EEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 667789999999999999999865
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=131.12 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=89.6
Q ss_pred EEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhc---------------------C---------------C
Q 047630 239 IGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASR---------------------G---------------V 281 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~r---------------------g---------------~ 281 (392)
.|||||||+|.++..++. .+..|+| +|++..+.+.+.++ + .
T Consensus 74 ~vLDiGcG~G~~~~l~~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 151 (289)
T 2g72_A 74 TLIDIGSGPTVYQLLSACSHFEDITM--TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 151 (289)
T ss_dssp EEEEETCTTCCGGGTTGGGGCSEEEE--ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred eEEEECCCcChHHHHhhccCCCeEEE--eCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhh
Confidence 349999999996554444 4678888 55544444433321 1 0
Q ss_pred ccEEEeccCc-CCC-----CCCcccEEEEcccccccCCc-hhHHHHHHHHHHcccCCcEEEEEeecccc-----------
Q 047630 282 VPLYISISQR-LPF-----FDNTLDIVHSMHVLSNWIPT-TLLHFLMFDIYRVLRPGGLFWLDHFFCVG----------- 343 (392)
Q Consensus 282 i~~~~~d~~~-Lpf-----~d~sFDlV~s~~~l~~~~~~-~~l~~~L~el~RvLKPGG~lii~~~~~~~----------- 343 (392)
+.++.+|+.. +|+ ++++||+|+++++++++.+. .+...+|++++|+|||||+|++.......
T Consensus 152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~ 231 (289)
T 2g72_A 152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 231 (289)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEEC
T ss_pred ceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeee
Confidence 2355567776 664 45679999999999884332 46788999999999999999887532110
Q ss_pred -cchHHHHHHHHHHcCCeEEEEEEee
Q 047630 344 -AQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 344 -~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
.-..+++.++++++||+.+.+....
T Consensus 232 ~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 232 VPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0126679999999999999988665
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=130.47 Aligned_cols=131 Identities=18% Similarity=0.103 Sum_probs=98.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCC-CCCcccEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPF-FDNTLDIV 302 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf-~d~sFDlV 302 (392)
.++.+| ||||||+|.++..+++.+. .++++| ++....+.+.++ + .+.++++|+..+++ .+++||+|
T Consensus 63 ~~~~~v---LDiGcG~G~~~~~l~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 63 KRGDSV---LDLGCGKGGDLLKYERAGIGEYYGVD--IAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CTTCEE---EEETCTTTTTHHHHHHHTCSEEEEEE--SCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCeE---EEECCCCCHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEE
Confidence 444555 9999999999999988765 888855 434444433322 2 26888999999888 68899999
Q ss_pred EEccccccc-CCchhHHHHHHHHHHcccCCcEEEEEeeccc---------------------------c-----------
Q 047630 303 HSMHVLSNW-IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV---------------------------G----------- 343 (392)
Q Consensus 303 ~s~~~l~~~-~~~~~l~~~L~el~RvLKPGG~lii~~~~~~---------------------------~----------- 343 (392)
++..++++. ....+...+++++.|+|||||++++...... .
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 999999763 3456678899999999999999988753210 0
Q ss_pred c-------c--hHHHHHHHHHHcCCeEEEEEEe
Q 047630 344 A-------Q--LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 344 ~-------~--l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+ . ..+++.++++++||+.+.+...
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 0 0 1467999999999999998754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-14 Score=141.29 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=101.2
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEE-----EeccCcCCCCC
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLY-----ISISQRLPFFD 296 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~-----~~d~~~Lpf~d 296 (392)
..+++.++.......-..|||||||+|.++..+++.+..++| +|++..+.+.+.+++. +.. .++.+.+++++
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~g--vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLG--FEPSSGVAAKAREKGI-RVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEE--ECCCHHHHHHHHTTTC-CEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEE--ECCCHHHHHHHHHcCC-CcceeeechhhHhhcccCC
Confidence 334444544322111223499999999999999999999988 6665566666666653 333 23455667778
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc-------c-----c----chHHHHHHHHHHcCCe
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-------G-----A----QLEDVYVPLIESVGFN 360 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~-------~-----~----~l~~~l~~ll~~aGf~ 360 (392)
++||+|++..+++|+ .+...++++++|+|||||++++...... . + -..+.+.++++++||+
T Consensus 170 ~~fD~I~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~ 246 (416)
T 4e2x_A 170 GPANVIYAANTLCHI---PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFE 246 (416)
T ss_dssp CCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEE
T ss_pred CCEEEEEECChHHhc---CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCE
Confidence 999999999999998 3556799999999999999999754210 0 0 0156799999999999
Q ss_pred EEEEEEe
Q 047630 361 KLKWVVG 367 (392)
Q Consensus 361 ~i~w~~~ 367 (392)
.+.....
T Consensus 247 ~~~~~~~ 253 (416)
T 4e2x_A 247 LVDVQRL 253 (416)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9988754
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-13 Score=133.99 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=97.9
Q ss_pred HHHHHhhCC-CCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccE
Q 047630 225 IDEVLATKK-PGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 225 I~~ll~l~~-~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDl 301 (392)
+..++...+ -....+|||||||+|.++..+++.. ..+++ +|+ +...+.+.+...+.++.+|+.. |++++ |+
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~ 264 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAIN--FDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DA 264 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SE
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEE--Eeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CE
Confidence 444554332 2334556999999999999999954 45555 665 3333333333457899999876 77655 99
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--------------------------chHHHHHHHHH
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------------------------QLEDVYVPLIE 355 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------------------------~l~~~l~~ll~ 355 (392)
|++..++|+|.+ +....+|++++++|||||+|++.++..... ...++|.++++
T Consensus 265 v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~ 343 (368)
T 3reo_A 265 IFIKWICHDWSD-EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAM 343 (368)
T ss_dssp EEEESCGGGBCH-HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHH
T ss_pred EEEechhhcCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHH
Confidence 999999999744 455689999999999999999887542211 11567999999
Q ss_pred HcCCeEEEEEEe
Q 047630 356 SVGFNKLKWVVG 367 (392)
Q Consensus 356 ~aGf~~i~w~~~ 367 (392)
++||+.++....
T Consensus 344 ~AGF~~v~~~~~ 355 (368)
T 3reo_A 344 ASGFRGFKVASC 355 (368)
T ss_dssp HTTCCEEEEEEE
T ss_pred HCCCeeeEEEEe
Confidence 999999987744
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=136.92 Aligned_cols=123 Identities=13% Similarity=0.147 Sum_probs=92.5
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcC--CCCCCcccEEEEcc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRL--PFFDNTLDIVHSMH 306 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~L--pf~d~sFDlV~s~~ 306 (392)
++|||||||+|.++..+++. +..+++ +|+ +...+.+.++ + .+.++.+|.... |++ ++||+|++..
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 181 KRLLDIGGNTGKWATQCVQYNKEVEVTI--VDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp SEEEEESCTTCHHHHHHHHHSTTCEEEE--EEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEE--EeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 44599999999999999984 556766 555 4444433332 2 378899998875 565 7899999999
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--------------------------chHHHHHHHHHHcCCe
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------------------------QLEDVYVPLIESVGFN 360 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------------------------~l~~~l~~ll~~aGf~ 360 (392)
++|+|. ++....+|++++|+|||||+|++.+...... ...++|.++++++||+
T Consensus 257 vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 257 FLDCFS-EEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp CSTTSC-HHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred hhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 999874 4455689999999999999998877532211 1267799999999999
Q ss_pred EEEEE
Q 047630 361 KLKWV 365 (392)
Q Consensus 361 ~i~w~ 365 (392)
.++..
T Consensus 336 ~v~~~ 340 (363)
T 3dp7_A 336 VEEIQ 340 (363)
T ss_dssp ESCCC
T ss_pred EEEEE
Confidence 87654
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=129.66 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=99.5
Q ss_pred HHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc------CCccEEEeccCcCCCCCCc
Q 047630 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR------GVVPLYISISQRLPFFDNT 298 (392)
Q Consensus 225 I~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r------g~i~~~~~d~~~Lpf~d~s 298 (392)
...++...+-...++|||||||+|.++..++++.+.+.++..|. +...+.+.++ ..++++.+|+...|.+ .
T Consensus 168 ~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~ 244 (353)
T 4a6d_A 168 GRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--E 244 (353)
T ss_dssp HHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--C
T ss_pred HHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--C
Confidence 34444433334455679999999999999999776655555666 4444333322 2478899998766554 4
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------------------chHHHHHHHHHH
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------------------QLEDVYVPLIES 356 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------------------~l~~~l~~ll~~ 356 (392)
+|+|++.+++|+|.+ +....+|++++++|+|||+++|.+.....+ ...++|.+++++
T Consensus 245 ~D~~~~~~vlh~~~d-~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~ 323 (353)
T 4a6d_A 245 ADLYILARVLHDWAD-GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSS 323 (353)
T ss_dssp CSEEEEESSGGGSCH-HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHH
T ss_pred ceEEEeeeecccCCH-HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence 799999999999844 445689999999999999998887643211 116779999999
Q ss_pred cCCeEEEEE
Q 047630 357 VGFNKLKWV 365 (392)
Q Consensus 357 aGf~~i~w~ 365 (392)
+||+.++..
T Consensus 324 AGf~~v~v~ 332 (353)
T 4a6d_A 324 AGFRDFQFK 332 (353)
T ss_dssp HTCEEEEEE
T ss_pred CCCceEEEE
Confidence 999999875
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-13 Score=130.44 Aligned_cols=138 Identities=12% Similarity=0.145 Sum_probs=99.3
Q ss_pred ccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCC-CCCCcccEEEEcc
Q 047630 237 IRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLP-FFDNTLDIVHSMH 306 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lp-f~d~sFDlV~s~~ 306 (392)
..+|||||||+|.++..+++. +..+++ +|+ ....+.+. +.+ .+.++.+|....+ +.++.||+|++..
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQI--WDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEE--EEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEE--EEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence 345599999999999999986 456666 555 44433222 223 3788899988765 2345699999999
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-----------------------cchHHHHHHHHHHcCCeEEE
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----------------------AQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----------------------~~l~~~l~~ll~~aGf~~i~ 363 (392)
++|+| +++....++++++++|||||+|++.+..... ....++|.++++++||+.++
T Consensus 257 vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 257 CLHYF-DAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp CGGGS-CHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccccC-CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence 99997 4455578999999999999999988753221 11166799999999999998
Q ss_pred EEEeeccCCCCcccceeeEEEEEcCC
Q 047630 364 WVVGRKLDRGPELREMYLSALLEKPF 389 (392)
Q Consensus 364 w~~~~k~d~~~~~~e~ylsai~~Kp~ 389 (392)
.. .+.+. ..+.+||.
T Consensus 336 ~~----------~g~~~-l~~a~kp~ 350 (352)
T 3mcz_A 336 RS----------IGRYT-LLIGQRSS 350 (352)
T ss_dssp EE----------ETTEE-EEEEECCC
T ss_pred ec----------cCceE-EEEEecCC
Confidence 32 12232 36788884
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=132.91 Aligned_cols=124 Identities=18% Similarity=0.164 Sum_probs=94.0
Q ss_pred ccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCc
Q 047630 237 IRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPT 314 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~ 314 (392)
...|||||||+|.++..+++.. ..+++ +|+ +...+.+.+...+.++.+|+.. |++++ |+|++..++|+|. +
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~-d 274 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVN--FDL-PHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWS-D 274 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSC-H
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCeEEE--ecC-HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCC-H
Confidence 3456999999999999999854 45555 566 4333333333458899999887 77765 9999999999974 4
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEeeccccc--------------------------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------------------------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------------------------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
++...+|++++++|||||+|++.++..... ...++|.++++++||+.++....
T Consensus 275 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 353 (364)
T 3p9c_A 275 QHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYI 353 (364)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEc
Confidence 455689999999999999999887543211 11567999999999999988744
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=126.34 Aligned_cols=127 Identities=21% Similarity=0.261 Sum_probs=89.3
Q ss_pred EEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc----C-CccEEEeccCcC--CCCCCcccEEEE-ccccc-
Q 047630 240 GLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRL--PFFDNTLDIVHS-MHVLS- 309 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~L--pf~d~sFDlV~s-~~~l~- 309 (392)
|||||||+|.++..+++.+. .+++ +|++..+.+.+.++ + .+.++++|...+ ++++++||+|++ .+.++
T Consensus 64 vLDiGcGtG~~~~~l~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~ 141 (236)
T 1zx0_A 64 VLEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSE 141 (236)
T ss_dssp EEEECCTTSHHHHHHHTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBG
T ss_pred EEEEeccCCHHHHHHHhcCCCeEEE--EcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcccch
Confidence 49999999999999988665 6777 55544555444332 2 367888998888 899999999999 55541
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-----------cchHHHHHHHHHHcCCeE--EEEEEee
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----------AQLEDVYVPLIESVGFNK--LKWVVGR 368 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----------~~l~~~l~~ll~~aGf~~--i~w~~~~ 368 (392)
+.......+.++++++|+|||||+|++.++.... ....+.....+.++||+. +.+....
T Consensus 142 ~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~i~~~~~~ 213 (236)
T 1zx0_A 142 ETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRTEVMA 213 (236)
T ss_dssp GGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGEEEEEEE
T ss_pred hhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCCCceeEEEEe
Confidence 1122345567899999999999999987653211 111344566789999984 6665444
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=130.05 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=93.6
Q ss_pred cccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----c---CCccEEEeccCcCCCCCCcccEEEEcc
Q 047630 236 TIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----R---GVVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----r---g~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
...+|||||||+|.++..+++. +..+++ +|+ ....+.+.+ . ..+.+..+|.. .+++. .||+|++.+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 243 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTV--LDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA 243 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEES
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEE--ecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh
Confidence 3456699999999999999985 455666 556 444443332 2 24788899886 45555 899999999
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc------------------chHHHHHHHHHHcCCeEEEEEE
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------------------QLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------------------~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
++|+|. ++....+|++++++|||||++++.+...... ...++|.++++++||+.++...
T Consensus 244 vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 244 VLHDWD-DLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hhccCC-HHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 999974 4445689999999999999999987643321 1167799999999999998763
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-13 Score=119.53 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=88.4
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHh----cCC--ccEEEeccCcCCCCCCcccEEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIAS----RGV--VPLYISISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~----rg~--i~~~~~d~~~Lpf~d~sFDlV~s 304 (392)
.++.+| ||+|||+|.++..+++.+. .++++|++ ..+.+.+.+ .+. +.+..+|.... .+++||+|++
T Consensus 59 ~~~~~v---LDiG~G~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~ 131 (205)
T 3grz_A 59 VKPLTV---ADVGTGSGILAIAAHKLGAKSVLATDIS--DESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVA 131 (205)
T ss_dssp SSCCEE---EEETCTTSHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEE
T ss_pred cCCCEE---EEECCCCCHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEE
Confidence 344445 9999999999999998765 88885543 444443332 232 67888887664 4689999999
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
...+++ +..+++++.++|||||++++..+... ..+.+.+.++++||+.+...
T Consensus 132 ~~~~~~------~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 132 NILAEI------LLDLIPQLDSHLNEDGQVIFSGIDYL---QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp ESCHHH------HHHHGGGSGGGEEEEEEEEEEEEEGG---GHHHHHHHHHHTTEEEEEEE
T ss_pred CCcHHH------HHHHHHHHHHhcCCCCEEEEEecCcc---cHHHHHHHHHHcCCceEEee
Confidence 887755 35789999999999999999876543 23458889999999998765
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=127.28 Aligned_cols=124 Identities=16% Similarity=0.280 Sum_probs=93.7
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
.+|||||||+|.++..+++. +.+++++ |+ ....+.+.+ .+ .+.++.+|....++++. |+|++..++
T Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~vl 266 (359)
T 1x19_A 192 KKMIDVGGGIGDISAAMLKHFPELDSTIL--NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRIL 266 (359)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTCEEEEE--EC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESCG
T ss_pred CEEEEECCcccHHHHHHHHHCCCCeEEEE--ec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEechh
Confidence 44599999999999999986 4577774 45 444443332 23 37889999988877654 999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeeccc-------------------c-c----chHHHHHHHHHHcCCeEEEE
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-------------------G-A----QLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~-------------------~-~----~l~~~l~~ll~~aGf~~i~w 364 (392)
|+| +++....+++++.++|||||++++.++... . + ...++|.++++++||+.+++
T Consensus 267 h~~-~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~ 345 (359)
T 1x19_A 267 YSA-NEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 345 (359)
T ss_dssp GGS-CHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEE
T ss_pred ccC-CHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEE
Confidence 997 444467899999999999999988774321 1 1 23566999999999999987
Q ss_pred EEe
Q 047630 365 VVG 367 (392)
Q Consensus 365 ~~~ 367 (392)
...
T Consensus 346 ~~~ 348 (359)
T 1x19_A 346 VRK 348 (359)
T ss_dssp EEE
T ss_pred Eec
Confidence 743
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=126.90 Aligned_cols=122 Identities=15% Similarity=0.168 Sum_probs=93.3
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
+|||+|||+|.++..+++. +.+++++ |++ ...+.+.+ .+ .+.+..+|....+++++ ||+|++..++|
T Consensus 168 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~ 243 (335)
T 2r3s_A 168 KVLDISASHGLFGIAVAQHNPNAEIFGV--DWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLH 243 (335)
T ss_dssp EEEEETCTTCHHHHHHHHHCTTCEEEEE--ECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCGG
T ss_pred EEEEECCCcCHHHHHHHHHCCCCeEEEE--ecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchhc
Confidence 4499999999999999986 5678774 453 33332222 22 37889999888777655 99999999999
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-----------------------chHHHHHHHHHHcCCeEEEEE
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-----------------------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-----------------------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
++ +++....+++++.++|||||++++.++..... ...+++.++++++||+.+++.
T Consensus 244 ~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 244 HF-DVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp GS-CHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred cC-CHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 86 44555789999999999999998887643221 116679999999999999876
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=128.66 Aligned_cols=136 Identities=16% Similarity=0.211 Sum_probs=98.4
Q ss_pred HHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCC
Q 047630 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFF 295 (392)
Q Consensus 225 I~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~ 295 (392)
+..++...+-....+|||||||+|.++..+++. +..+++ +|+ ....+.+.+ .+ .+.+..+|.. .+++
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p 266 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTL--LER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIP 266 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEE--EcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC
Confidence 344444332233455699999999999999996 456666 555 444443322 22 4788999987 4666
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--------------------chHHHHHHHHH
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------------------QLEDVYVPLIE 355 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------------------~l~~~l~~ll~ 355 (392)
. .||+|++..++|+| +++....+|++++++|||||+|++.+...... ...++|.++++
T Consensus 267 ~-~~D~v~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~ 344 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDW-DDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLE 344 (369)
T ss_dssp S-SCSEEEEESCGGGS-CHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHH
T ss_pred C-CceEEEhhhhhccC-CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHH
Confidence 5 79999999999987 44444579999999999999999987654331 11677999999
Q ss_pred HcCCeEEEEEE
Q 047630 356 SVGFNKLKWVV 366 (392)
Q Consensus 356 ~aGf~~i~w~~ 366 (392)
++||+.++...
T Consensus 345 ~aGf~~~~~~~ 355 (369)
T 3gwz_A 345 KSGLRVERSLP 355 (369)
T ss_dssp TTTEEEEEEEE
T ss_pred HCCCeEEEEEE
Confidence 99999998863
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=115.62 Aligned_cols=132 Identities=8% Similarity=0.022 Sum_probs=85.4
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCC-CCCCcccEEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLP-FFDNTLDIVHS 304 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lp-f~d~sFDlV~s 304 (392)
.++.+| ||+|||+|.++..+++.+..|+++|++ ..+.+.+. +.+ .+.+++++...++ +.+++||+|++
T Consensus 21 ~~~~~v---LDiGcG~G~~~~~la~~~~~v~~vD~s--~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 21 DDESIV---VDATMGNGNDTAFLAGLSKKVYAFDVQ--EQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp CTTCEE---EESCCTTSHHHHHHHTTSSEEEEEESC--HHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred CCCCEE---EEEcCCCCHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence 344555 999999999999999998999995544 44444332 223 3678887777653 45788999998
Q ss_pred ccccccc------CCchhHHHHHHHHHHcccCCcEEEEEeeccccc--chHHHHHHHH---HHcCCeEEEEEEee
Q 047630 305 MHVLSNW------IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--QLEDVYVPLI---ESVGFNKLKWVVGR 368 (392)
Q Consensus 305 ~~~l~~~------~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--~l~~~l~~ll---~~aGf~~i~w~~~~ 368 (392)
+....+. ........+++++.|+|||||++++..+..... +..+.+.+.+ ...+|...++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLN 170 (185)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESS
T ss_pred eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhc
Confidence 7433221 123455678999999999999999987653322 1122233444 44568888877654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-13 Score=128.46 Aligned_cols=126 Identities=11% Similarity=0.055 Sum_probs=84.7
Q ss_pred EEEEEcCCcchHHHH----HHHc--CCEEEEEecCCCchhHHHHHhc-----C--CccE--EEeccCcCC------CCCC
Q 047630 239 IGLDIGGGVATFAVR----MMER--NITIVTTSMNLNGPFNNFIASR-----G--VVPL--YISISQRLP------FFDN 297 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~----La~~--g~~vvg~~iD~~a~~~~~aa~r-----g--~i~~--~~~d~~~Lp------f~d~ 297 (392)
.|||||||+|.++.. ++.+ +..+..+++|++..+.+.+.++ + .+.+ ..++.+.++ ++++
T Consensus 55 ~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (292)
T 2aot_A 55 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQ 134 (292)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCCC
T ss_pred eEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCCC
Confidence 459999999976543 3333 4444223477766665543332 2 1233 344454443 5689
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc--------------------cchHHHHHHHHHHc
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG--------------------AQLEDVYVPLIESV 357 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~--------------------~~l~~~l~~ll~~a 357 (392)
+||+|++..++||+ .+...+|++++|+|||||+|++....... ....+++.++++++
T Consensus 135 ~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 211 (292)
T 2aot_A 135 KWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 211 (292)
T ss_dssp CEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHH
T ss_pred ceeEEEEeeeeeec---CCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHC
Confidence 99999999999998 44457999999999999999887532110 01156789999999
Q ss_pred CCeEEEEEEe
Q 047630 358 GFNKLKWVVG 367 (392)
Q Consensus 358 Gf~~i~w~~~ 367 (392)
||+.+.....
T Consensus 212 Gf~~~~~~~~ 221 (292)
T 2aot_A 212 GLKYECYDLL 221 (292)
T ss_dssp TCCEEEEEEC
T ss_pred CCceEEEEec
Confidence 9998875543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-12 Score=112.37 Aligned_cols=132 Identities=15% Similarity=0.077 Sum_probs=95.4
Q ss_pred HHHHHHHHHhh--CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCc
Q 047630 221 LDFSIDEVLAT--KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNT 298 (392)
Q Consensus 221 ~~~lI~~ll~l--~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~s 298 (392)
.+.+++. +.. .++++| ||+|||+|.++..+++.+ .++|+|++ ..+.+. ...+.++++|+.. ++++++
T Consensus 10 ~~~l~~~-l~~~~~~~~~v---LD~GcG~G~~~~~l~~~~-~v~gvD~s--~~~~~~---~~~~~~~~~d~~~-~~~~~~ 78 (170)
T 3q87_B 10 TYTLMDA-LEREGLEMKIV---LDLGTSTGVITEQLRKRN-TVVSTDLN--IRALES---HRGGNLVRADLLC-SINQES 78 (170)
T ss_dssp HHHHHHH-HHHHTCCSCEE---EEETCTTCHHHHHHTTTS-EEEEEESC--HHHHHT---CSSSCEEECSTTT-TBCGGG
T ss_pred HHHHHHH-HHhhcCCCCeE---EEeccCccHHHHHHHhcC-cEEEEECC--HHHHhc---ccCCeEEECChhh-hcccCC
Confidence 4445555 433 444555 999999999999999998 88885543 333333 3347899999877 667789
Q ss_pred ccEEEEcccccccCCc------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 299 LDIVHSMHVLSNWIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
||+|+++..+++..+. .....++.++.+.| |||.+++..... ...+.+.++++++||+.+.....
T Consensus 79 fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~---~~~~~l~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 79 VDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA---NRPKEVLARLEERGYGTRILKVR 149 (170)
T ss_dssp CSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG---GCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC---CCHHHHHHHHHHCCCcEEEEEee
Confidence 9999999888753332 12236889999999 999998876433 22345888999999998776643
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=122.93 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=92.6
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCc----hhHHHH----HhcC---CccEEEec---cCcCC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNG----PFNNFI----ASRG---VVPLYISI---SQRLP 293 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a----~~~~~a----a~rg---~i~~~~~d---~~~Lp 293 (392)
+.++.+| ||||||+|.++..+++. + ..++++|++... ...+.+ ...+ .+.+..+| ...+|
T Consensus 41 ~~~~~~v---LDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 117 (275)
T 3bkx_A 41 VKPGEKI---LEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP 117 (275)
T ss_dssp CCTTCEE---EEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG
T ss_pred CCCCCEE---EEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC
Confidence 4455555 99999999999999986 4 688885554410 033322 2222 36788887 56678
Q ss_pred CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-----------------------------
Q 047630 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------------------------- 344 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------------------------- 344 (392)
+++++||+|++..+++|+.++. .+++.+.++++|||++++.++.....
T Consensus 118 ~~~~~fD~v~~~~~l~~~~~~~---~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (275)
T 3bkx_A 118 IADQHFDRVVLAHSLWYFASAN---ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIR 194 (275)
T ss_dssp GTTCCCSEEEEESCGGGSSCHH---HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCC
T ss_pred CCCCCEEEEEEccchhhCCCHH---HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccccccc
Confidence 8889999999999999974443 46777777777799999986532110
Q ss_pred --chHHHHHHHHHHcCCeEEEEEEe
Q 047630 345 --QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 345 --~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
...+.+.++++++||+.+.....
T Consensus 195 ~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 195 TLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 01456889999999999887644
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=126.08 Aligned_cols=123 Identities=14% Similarity=0.056 Sum_probs=92.9
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-------CCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-------GVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-------g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
.+|||||||+|.++..+++. +..++++|+ ....+.+.++ ..+.++.+|... +++ ++||+|++..++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR---EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC---TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc---HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhc
Confidence 56699999999999999986 567777554 3333332221 347889998876 555 679999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeecccc---------------------cchHHHHHHHHHHcCCeEEEEEE
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------------------AQLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------------------~~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
|+| +++....++++++++|||||++++.+..... ....++|.++++++||+.++...
T Consensus 244 ~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 244 GDL-DEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp GGC-CHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred cCC-CHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 997 4444568999999999999999988754221 11266799999999999988763
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=120.83 Aligned_cols=94 Identities=20% Similarity=0.261 Sum_probs=76.9
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
.|||+|||+|.++..+ +. .+++ +|++..+.+.+.++ ..+.+++++...+|+++++||+|++..+++|+. +
T Consensus 39 ~vLdiG~G~G~~~~~l---~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~---~ 110 (211)
T 2gs9_A 39 SLLEVGAGTGYWLRRL---PYPQKVG--VEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE---D 110 (211)
T ss_dssp EEEEETCTTCHHHHHC---CCSEEEE--ECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS---C
T ss_pred eEEEECCCCCHhHHhC---CCCeEEE--EeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC---C
Confidence 4499999999999888 66 8888 55645555555544 247889999999999999999999999999973 4
Q ss_pred HHHHHHHHHHcccCCcEEEEEeec
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
...+++++.|+|||||.+++..+.
T Consensus 111 ~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 111 VERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEEEecC
Confidence 457999999999999999998753
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=127.83 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=90.9
Q ss_pred ccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHH--H---hcCCccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 237 IRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFI--A---SRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~a--a---~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
..+|||||||+|.++..+++....+.++++|+ +...... . ....+.+..+|.. .+++ +||+|++..++|+|
T Consensus 185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~~ 260 (348)
T 3lst_A 185 TGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRILHNW 260 (348)
T ss_dssp SEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCGGGS
T ss_pred CceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhccCC
Confidence 34559999999999999999655544555666 3322210 0 0123788888885 3444 89999999999997
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeeccccc---------------------chHHHHHHHHHHcCCeEEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA---------------------QLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~---------------------~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
. +.....+|++++|+|||||+|++.+...... ...++|.++++++||+.++...
T Consensus 261 ~-d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 261 G-DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp C-HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred C-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 4 3444689999999999999999887533211 1267799999999999998764
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=122.19 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=86.6
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcCC-ccEEEeccCcCCCCCCcccEEEEcccccccCCc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRGV-VPLYISISQRLPFFDNTLDIVHSMHVLSNWIPT 314 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~ 314 (392)
|||+|||+|.++..+++.+..++++|+|. ...+. +...+. +.+..++.... +++++||+|+++...++
T Consensus 124 VLDiGcG~G~l~~~la~~g~~v~gvDi~~--~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~---- 196 (254)
T 2nxc_A 124 VLDLGTGSGVLAIAAEKLGGKALGVDIDP--MVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL---- 196 (254)
T ss_dssp EEEETCTTSHHHHHHHHTTCEEEEEESCG--GGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH----
T ss_pred EEEecCCCcHHHHHHHHhCCeEEEEECCH--HHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHHH----
Confidence 49999999999999999988998866554 33332 223343 67777776552 45678999999765433
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+..++.++.++|||||++++..+.... .+.+.+.++++||+.+...
T Consensus 197 --~~~~l~~~~~~LkpgG~lils~~~~~~---~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 197 --HAALAPRYREALVPGGRALLTGILKDR---APLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEEEGGG---HHHHHHHHHHTTCEEEEEE
T ss_pred --HHHHHHHHHHHcCCCCEEEEEeeccCC---HHHHHHHHHHCCCEEEEEe
Confidence 457999999999999999998765432 4558889999999998875
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-13 Score=123.68 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=92.3
Q ss_pred HHHHHHHHh--hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-CCccEEEecc-CcCCCC-C
Q 047630 222 DFSIDEVLA--TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-GVVPLYISIS-QRLPFF-D 296 (392)
Q Consensus 222 ~~lI~~ll~--l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~-~~Lpf~-d 296 (392)
+.+++.++. +.++.+| ||||||+|.++..+++.+..++++| ++..+.+.+.++ ..+.++++|. +.+|++ +
T Consensus 35 ~~l~~~~~~~~~~~~~~v---LDiGcG~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~ 109 (226)
T 3m33_A 35 ELTFDLWLSRLLTPQTRV---LEAGCGHGPDAARFGPQAARWAAYD--FSPELLKLARANAPHADVYEWNGKGELPAGLG 109 (226)
T ss_dssp THHHHHHHHHHCCTTCEE---EEESCTTSHHHHHHGGGSSEEEEEE--SCHHHHHHHHHHCTTSEEEECCSCSSCCTTCC
T ss_pred HHHHHHHHHhcCCCCCeE---EEeCCCCCHHHHHHHHcCCEEEEEE--CCHHHHHHHHHhCCCceEEEcchhhccCCcCC
Confidence 444554443 3344555 9999999999999999999999955 544555555444 2478999998 678888 8
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
++||+|++.. +.. .+++++.++|||||+++...... . .+.+.+.++++||+.+.....
T Consensus 110 ~~fD~v~~~~------~~~---~~l~~~~~~LkpgG~l~~~~~~~---~-~~~~~~~l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 110 APFGLIVSRR------GPT---SVILRLPELAAPDAHFLYVGPRL---N-VPEVPERLAAVGWDIVAEDHV 167 (226)
T ss_dssp CCEEEEEEES------CCS---GGGGGHHHHEEEEEEEEEEESSS---C-CTHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEEeCC------CHH---HHHHHHHHHcCCCcEEEEeCCcC---C-HHHHHHHHHHCCCeEEEEEee
Confidence 9999999872 112 47899999999999998222111 1 234788999999998876543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=126.83 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=70.8
Q ss_pred EEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc----CC--------ccEEEecc------CcC--CCCCC
Q 047630 239 IGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR----GV--------VPLYISIS------QRL--PFFDN 297 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r----g~--------i~~~~~d~------~~L--pf~d~ 297 (392)
.|||||||+|..+..++.. +..|+|+| ++..+.+.+.++ +. +.+.+.++ +.+ +++++
T Consensus 51 ~VLDlGCG~G~~l~~~~~~~~~~v~GiD--~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~ 128 (302)
T 2vdw_A 51 KVLAIDFGNGADLEKYFYGEIALLVATD--PDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG 128 (302)
T ss_dssp EEEETTCTTTTTHHHHHHTTCSEEEEEE--SCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred eEEEEecCCcHhHHHHHhcCCCeEEEEE--CCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence 3499999999877666654 46888854 544555443332 21 34666665 333 35678
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+||+|+|.+++|+..+.++...++++++|+|||||+|++...
T Consensus 129 ~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 129 KFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp CEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999999999998754444567999999999999999987754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.7e-13 Score=124.30 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=78.3
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
.|||||||+|.++..+++.+..++++| ++..+.+.+.++....++++|...+++++++||+|++..++.|+.++ ..
T Consensus 57 ~vLDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~--~~ 132 (260)
T 2avn_A 57 RVLDLGGGTGKWSLFLQERGFEVVLVD--PSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN--KD 132 (260)
T ss_dssp EEEEETCTTCHHHHHHHTTTCEEEEEE--SCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC--HH
T ss_pred eEEEeCCCcCHHHHHHHHcCCeEEEEe--CCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc--HH
Confidence 349999999999999999999998854 54455555555432248889999999989999999999877776443 56
Q ss_pred HHHHHHHHcccCCcEEEEEee
Q 047630 319 FLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~ 339 (392)
.+++++.|+|||||.+++...
T Consensus 133 ~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 133 KAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEeC
Confidence 899999999999999998764
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-12 Score=125.62 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=90.8
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.+|||||||+|.++..+++.+..+.++++|+ ....+.+. +.+ .+.++.+|... +++. .||+|++..++|+
T Consensus 185 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~ 261 (360)
T 1tw3_A 185 RHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFVLLN 261 (360)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESCGGG
T ss_pred cEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcccccC
Confidence 3459999999999999998654333344555 44444332 222 37888888765 3444 4999999999998
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeec-cccc---------------------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFF-CVGA---------------------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~-~~~~---------------------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
| ++.....+++++.++|||||++++.++. .... ...++|.++++++||+.++....
T Consensus 262 ~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 339 (360)
T 1tw3_A 262 W-PDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQL 339 (360)
T ss_dssp S-CHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeC
Confidence 7 3444457999999999999999988765 2111 11567999999999999987644
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=126.90 Aligned_cols=124 Identities=23% Similarity=0.204 Sum_probs=90.0
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
.+|||||||+|.++..+++. +..+++ +|+ ....+.+.+ .+ .+.++.+|... +++. .||+|++..++
T Consensus 184 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl 258 (374)
T 1qzz_A 184 RHVLDVGGGNGGMLAAIALRAPHLRGTL--VEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFVL 258 (374)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESCG
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCEEEE--EeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEeccc
Confidence 34599999999999999986 456666 555 444443332 22 47888898765 4444 39999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEee--ccccc---------------------chHHHHHHHHHHcCCeEEEEE
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF--FCVGA---------------------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~--~~~~~---------------------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
|+|. +.....+++++.++|||||++++.+. ..... ...++|.++++++||+.++..
T Consensus 259 ~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~ 337 (374)
T 1qzz_A 259 LNWS-DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER 337 (374)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred cCCC-HHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 9873 34445799999999999999988776 42211 125679999999999998877
Q ss_pred Ee
Q 047630 366 VG 367 (392)
Q Consensus 366 ~~ 367 (392)
..
T Consensus 338 ~~ 339 (374)
T 1qzz_A 338 TS 339 (374)
T ss_dssp EE
T ss_pred EC
Confidence 44
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-13 Score=123.29 Aligned_cols=129 Identities=9% Similarity=-0.042 Sum_probs=94.9
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc---CCccEEEeccCcCCCCC-----CcccEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR---GVVPLYISISQRLPFFD-----NTLDIVH 303 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r---g~i~~~~~d~~~Lpf~d-----~sFDlV~ 303 (392)
.++.+| ||+|||+|.++..+++.+..++++| ++..+.+.+.++ ..+.++++|+..+++.. ..||+|+
T Consensus 55 ~~~~~v---LD~GcG~G~~~~~la~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~ 129 (245)
T 3ggd_A 55 NPELPL---IDFACGNGTQTKFLSQFFPRVIGLD--VSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIY 129 (245)
T ss_dssp CTTSCE---EEETCTTSHHHHHHHHHSSCEEEEE--SCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred CCCCeE---EEEcCCCCHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEE
Confidence 344555 9999999999999999888888855 534454444433 24788899988865432 3499999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc-----------------------------hHHHHHHHH
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ-----------------------------LEDVYVPLI 354 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~-----------------------------l~~~l~~ll 354 (392)
+..+++++ ++++...+++++.|+|||||++++.++...... ..+++.+++
T Consensus 130 ~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 130 MRTGFHHI-PVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp EESSSTTS-CGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred EcchhhcC-CHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 99999885 556678899999999999999988876432211 135577777
Q ss_pred HHcCCeEEEEEEee
Q 047630 355 ESVGFNKLKWVVGR 368 (392)
Q Consensus 355 ~~aGf~~i~w~~~~ 368 (392)
+||+.+.-....
T Consensus 209 --aGf~~~~~~~~~ 220 (245)
T 3ggd_A 209 --PDFEILSQGEGL 220 (245)
T ss_dssp --TTEEEEEEECCB
T ss_pred --CCCEEEeccccc
Confidence 899998766443
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=129.63 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=92.0
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhH
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLL 317 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l 317 (392)
..|||||||+|.++..++++...+.++.+|+ +...+.+.+...+.++.+|+.. ++++ ||+|++..++|+|.+ ...
T Consensus 211 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d-~~~ 285 (372)
T 1fp1_D 211 STLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSD-EKC 285 (372)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCH-HHH
T ss_pred CEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCH-HHH
Confidence 4559999999999999999765444444666 4433333332347889999877 6654 999999999999743 344
Q ss_pred HHHHHHHHHcccCCcEEEEEeeccccc-------------------------chHHHHHHHHHHcCCeEEEEEE
Q 047630 318 HFLMFDIYRVLRPGGLFWLDHFFCVGA-------------------------QLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 318 ~~~L~el~RvLKPGG~lii~~~~~~~~-------------------------~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
..+|++++|+|||||+|++.++..... ...++|.++++++||+.++...
T Consensus 286 ~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 286 IEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 589999999999999999886532110 1156799999999999998764
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-12 Score=114.69 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=92.1
Q ss_pred HHHHHHHHhh-CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCC
Q 047630 222 DFSIDEVLAT-KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFF 295 (392)
Q Consensus 222 ~~lI~~ll~l-~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~ 295 (392)
..+.+.+... .++.+| ||+|||+|.++..+++.+. .++++| ++....+.+.++ ..+.+.++|...++++
T Consensus 30 ~~~~~~l~~~~~~~~~v---LdiGcG~G~~~~~l~~~~~~~v~~~D--~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~ 104 (215)
T 2pxx_A 30 SSFRALLEPELRPEDRI---LVLGCGNSALSYELFLGGFPNVTSVD--YSSVVVAAMQACYAHVPQLRWETMDVRKLDFP 104 (215)
T ss_dssp HHHHHHHGGGCCTTCCE---EEETCTTCSHHHHHHHTTCCCEEEEE--SCHHHHHHHHHHTTTCTTCEEEECCTTSCCSC
T ss_pred HHHHHHHHHhcCCCCeE---EEECCCCcHHHHHHHHcCCCcEEEEe--CCHHHHHHHHHhcccCCCcEEEEcchhcCCCC
Confidence 3344444433 344455 9999999999999999876 788855 534444444433 2478899999999998
Q ss_pred CCcccEEEEcccccccC------------CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCC
Q 047630 296 DNTLDIVHSMHVLSNWI------------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGF 359 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~------------~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf 359 (392)
+++||+|++..+++++. .......+++++.|+|||||.+++..+... .....++...||
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-----~~~~~~~~~~~~ 175 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP-----HFRTRHYAQAYY 175 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH-----HHHHHHHCCGGG
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc-----HHHHHHHhcccc
Confidence 89999999998887643 124567899999999999999999876542 223456666666
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.5e-12 Score=113.91 Aligned_cols=118 Identities=19% Similarity=0.117 Sum_probs=85.4
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCccc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sFD 300 (392)
+.+.++.+| ||+|||+|.++..+++.+ ..++++| ++....+.+.+ .+ .+.++.+|........++||
T Consensus 36 l~~~~~~~v---LDiG~G~G~~~~~la~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 110 (204)
T 3e05_A 36 LRLQDDLVM---WDIGAGSASVSIEASNLMPNGRIFALE--RNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPD 110 (204)
T ss_dssp TTCCTTCEE---EEETCTTCHHHHHHHHHCTTSEEEEEE--CCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCS
T ss_pred cCCCCCCEE---EEECCCCCHHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCC
Confidence 344455555 999999999999999976 7888855 53444443332 23 36788888765544447899
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN 360 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~ 360 (392)
+|++..+++ ....+++++.++|||||++++..... +..+.+.+.+++.||.
T Consensus 111 ~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 111 RVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTL---DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp EEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBH---HHHHHHHHHHHHTTCE
T ss_pred EEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEeccc---ccHHHHHHHHHHCCCc
Confidence 999988764 34579999999999999999976443 2234578889999983
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=113.04 Aligned_cols=126 Identities=16% Similarity=0.067 Sum_probs=90.5
Q ss_pred HHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcc
Q 047630 227 EVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 227 ~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sF 299 (392)
..+.+.++.+| ||+|||+|.++..+++.+..|+++|++ ..+.+.+.+ .+ .+.++.+|+.........|
T Consensus 49 ~~l~~~~~~~v---LDlGcG~G~~~~~la~~~~~v~~vD~s--~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 49 AALAPRRGELL---WDIGGGSGSVSVEWCLAGGRAITIEPR--ADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHCCCTTCEE---EEETCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HhcCCCCCCEE---EEecCCCCHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 34445555555 999999999999999998899995544 444443332 22 3678889987743334579
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
|+|++...+ ..+ +++++.++|||||++++..... +....+.+.+++.||+..++....
T Consensus 124 D~v~~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~~g~~i~~i~~~~ 181 (204)
T 3njr_A 124 EAVFIGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTL---ESETLLTQLHARHGGQLLRIDIAQ 181 (204)
T ss_dssp SEEEECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSH---HHHHHHHHHHHHHCSEEEEEEEEE
T ss_pred CEEEECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCc---ccHHHHHHHHHhCCCcEEEEEeec
Confidence 999987644 234 8999999999999999886533 223447778899999988877554
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=123.85 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=81.1
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHH---HcCCEEEEEecCCCchhHHHHHhc--------CCccEEEeccC
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMM---ERNITIVTTSMNLNGPFNNFIASR--------GVVPLYISISQ 290 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La---~~g~~vvg~~iD~~a~~~~~aa~r--------g~i~~~~~d~~ 290 (392)
..+++.+...... .-.+|||||||+|.++..++ ..+..++|+| ++..+.+.+.++ ..+.++++|++
T Consensus 23 ~~~~~~l~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 23 SDFYKMIDEYHDG-ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSD--LSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHHCCS-CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEE--SCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHHhcC-CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEe--CCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 3444545444321 22344999999999999999 4678888855 534444433322 24789999999
Q ss_pred cCCCCC------CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 291 RLPFFD------NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 291 ~Lpf~d------~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
.+++.+ ++||+|++..+++++ +...+++++.|+|||||.|++.
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEEE
Confidence 999887 899999999999887 3457999999999999999884
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-13 Score=125.19 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=83.9
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHhc----C-CccEEEeccCcC--CCCCCcccEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRL--PFFDNTLDIVH 303 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~L--pf~d~sFDlV~ 303 (392)
.++++| ||||||+|..+..+++.+ ..+++ +|++....+.+.++ + .+.++.++++.+ ++++++||.|+
T Consensus 59 ~~G~rV---LdiG~G~G~~~~~~~~~~~~~v~~--id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~ 133 (236)
T 3orh_A 59 SKGGRV---LEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEE---EEECCTTSHHHHHHTTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeE---EEECCCccHHHHHHHHhCCcEEEE--EeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEE
Confidence 345566 999999999999999865 45777 55544555544332 2 256677776543 57889999997
Q ss_pred Ec-----ccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-----------cchHHHHHHHHHHcCCeEE
Q 047630 304 SM-----HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----------AQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 304 s~-----~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----------~~l~~~l~~ll~~aGf~~i 362 (392)
.- ..++|. .+.+.++++++|+|||||+|++.+..... ....+.+...+.++||+..
T Consensus 134 ~D~~~~~~~~~~~---~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~ 205 (236)
T 3orh_A 134 YDTYPLSEETWHT---HQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRE 205 (236)
T ss_dssp ECCCCCBGGGTTT---HHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGG
T ss_pred Eeeeecccchhhh---cchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEE
Confidence 53 333343 56678999999999999999876532111 1124456677889999753
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.6e-12 Score=116.74 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=85.2
Q ss_pred EEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCCCC---CCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLPFF---DNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lpf~---d~sFDlV~s~~~ 307 (392)
.|||||||+|.++..++. .+..++++| ++..+.+.+. +.+ .+.+++++++++++. +++||+|++..+
T Consensus 73 ~vLDiG~G~G~~~~~la~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 150 (240)
T 1xdz_A 73 TICDVGAGAGFPSLPIKICFPHLHVTIVD--SLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (240)
T ss_dssp EEEEECSSSCTTHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred EEEEecCCCCHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc
Confidence 349999999999999985 567888855 5344443322 223 278889998888764 689999998763
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEE
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
..+..+++++.++|||||+|++..-....++. +.+.+.+++.||+.+....
T Consensus 151 -------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~-~~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 151 -------ARLSVLSELCLPLVKKNGLFVALKAASAEEEL-NAGKKAITTLGGELENIHS 201 (240)
T ss_dssp -------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHH-HHHHHHHHHTTEEEEEEEE
T ss_pred -------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHH-HHHHHHHHHcCCeEeEEEE
Confidence 23457999999999999999887533333333 4477788999998876553
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-12 Score=108.33 Aligned_cols=137 Identities=20% Similarity=0.200 Sum_probs=93.0
Q ss_pred EEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d~sFDlV~s~~~ 307 (392)
.|||+|||+|.++..+++. +..++++|++. ... ...+.+..+|....+ +++++||+|++..+
T Consensus 25 ~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~ 97 (180)
T 1ej0_A 25 TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---ccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEECCC
Confidence 3499999999999999986 36888866543 111 133678888988876 77889999999888
Q ss_pred ccccCCch--h------HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccce
Q 047630 308 LSNWIPTT--L------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREM 379 (392)
Q Consensus 308 l~~~~~~~--~------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ 379 (392)
+++..... . ...+++++.++|||||.+++..+..... ..+.+.+++. |+.+.+...... .....+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~ 171 (180)
T 1ej0_A 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGF---DEYLREIRSL-FTKVKVRKPDSS--RARSREV 171 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTH---HHHHHHHHHH-EEEEEEECCTTS--CTTCCEE
T ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcH---HHHHHHHHHh-hhhEEeecCCcc--cccCceE
Confidence 76543221 1 1578999999999999999887654322 2355556654 777766522221 1244577
Q ss_pred eeEEEEEcC
Q 047630 380 YLSALLEKP 388 (392)
Q Consensus 380 ylsai~~Kp 388 (392)
|+.+...||
T Consensus 172 ~~~~~~~~~ 180 (180)
T 1ej0_A 172 YIVATGRKP 180 (180)
T ss_dssp EEEEEEECC
T ss_pred EEEEccCCC
Confidence 765555554
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-12 Score=114.04 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=86.5
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCC--CCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLP--FFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lp--f~d~sFDlV~s~~~l 308 (392)
.|||||||+|.++..+++. +..++|+| ++......+. ..+ .+.++.+|+..++ +++++||+|++.+..
T Consensus 44 ~vLDiGcG~G~~~~~la~~~p~~~v~gvD--~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~ 121 (214)
T 1yzh_A 44 IHVEVGSGKGAFVSGMAKQNPDINYIGID--IQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 121 (214)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEEE--SCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred eEEEEccCcCHHHHHHHHHCCCCCEEEEE--cCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC
Confidence 3499999999999999986 46788855 4334443322 223 3778999988887 778899999998654
Q ss_pred cccCCch------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 309 SNWIPTT------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 309 ~~~~~~~------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
.+ .... ....++.++.++|||||.|++... .....+.+.+.+++.||+.+...
T Consensus 122 ~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 122 PW-PKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD---NRGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CC-CSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES---CHHHHHHHHHHHHHHTCEEEEEE
T ss_pred Cc-cccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHHCCCeeeecc
Confidence 32 1111 124699999999999999988642 22334556778889999887654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=112.80 Aligned_cols=127 Identities=19% Similarity=0.172 Sum_probs=88.5
Q ss_pred CCCCcccEEEEEcCC-cchHHHHHHHc-CCEEEEEecCCCchhHHHH----HhcC-CccEEEeccCcC-CCCCCcccEEE
Q 047630 232 KKPGTIRIGLDIGGG-VATFAVRMMER-NITIVTTSMNLNGPFNNFI----ASRG-VVPLYISISQRL-PFFDNTLDIVH 303 (392)
Q Consensus 232 ~~~~~ir~VLDIGCG-tG~~a~~La~~-g~~vvg~~iD~~a~~~~~a----a~rg-~i~~~~~d~~~L-pf~d~sFDlV~ 303 (392)
.++.+| ||+||| +|.++..+++. +..++++|+| ....+.+ ...+ .+.++++|...+ ++++++||+|+
T Consensus 54 ~~~~~v---LDlG~G~~G~~~~~la~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 54 RGGEVA---LEIGTGHTAMMALMAEKFFNCKVTATEVD--EEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp CSSCEE---EEECCTTTCHHHHHHHHHHCCEEEEEECC--HHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred CCCCEE---EEcCCCHHHHHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEE
Confidence 344555 999999 99999999998 8899995544 3444322 2334 378888886543 45678999999
Q ss_pred EcccccccCC----------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 304 SMHVLSNWIP----------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 304 s~~~l~~~~~----------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
++..+++..+ ......+++++.++|||||++++..... ....+.+.+.+++.||+.....
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK--EKLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc--HhHHHHHHHHHHHcCCceEEEE
Confidence 9877654321 1223679999999999999998864322 1334558889999999766554
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-12 Score=121.05 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=75.4
Q ss_pred ccEEEEEcCCc---chHHHHHHH--cCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCC-----------CCC
Q 047630 237 IRIGLDIGGGV---ATFAVRMME--RNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLP-----------FFD 296 (392)
Q Consensus 237 ir~VLDIGCGt---G~~a~~La~--~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lp-----------f~d 296 (392)
++.|||||||+ |.++..+.+ .+..|+++|+| ..+.+.+.++ +.+.++.+|+.+.+ ++.
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~s--p~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDID--PMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESS--HHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECC--hHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 45569999999 998877766 35788885543 3444433322 35788999876521 223
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.+||+|++..++|++.+. ....+|++++|+|||||+|++.++..
T Consensus 156 ~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 589999999999886543 56789999999999999999998764
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-12 Score=116.00 Aligned_cols=129 Identities=14% Similarity=0.184 Sum_probs=89.3
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HH----hcC--CccEEEeccCcCCCCCCc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IA----SRG--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa----~rg--~i~~~~~d~~~Lpf~d~s 298 (392)
..++.+| ||||||+|.++..+++. +..++|+| ++..+.+. +. ..+ .+.++++|+..+|+.+++
T Consensus 25 ~~~~~~v---LDiGcG~G~~~~~la~~~p~~~v~gvD--~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 99 (218)
T 3mq2_A 25 SQYDDVV---LDVGTGDGKHPYKVARQNPSRLVVALD--ADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV 99 (218)
T ss_dssp TTSSEEE---EEESCTTCHHHHHHHHHCTTEEEEEEE--SCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE
T ss_pred ccCCCEE---EEecCCCCHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC
Confidence 4444455 99999999999999997 67788855 43443332 11 123 368899999999998887
Q ss_pred ccEEEEccccc-----ccCCchhHHHHHHHHHHcccCCcEEEEEeeccc---------------ccchHHHHHHHHHHcC
Q 047630 299 LDIVHSMHVLS-----NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV---------------GAQLEDVYVPLIESVG 358 (392)
Q Consensus 299 FDlV~s~~~l~-----~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~---------------~~~l~~~l~~ll~~aG 358 (392)
|.|+...... |+.++ ..+++++.|+|||||.|++...... .....+.+.++++++|
T Consensus 100 -d~v~~~~~~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 175 (218)
T 3mq2_A 100 -GELHVLMPWGSLLRGVLGSS---PEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAG 175 (218)
T ss_dssp -EEEEEESCCHHHHHHHHTSS---SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTT
T ss_pred -CEEEEEccchhhhhhhhccH---HHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcC
Confidence 8887443221 22222 4699999999999999998642111 0112445888999999
Q ss_pred CeEEEEEEee
Q 047630 359 FNKLKWVVGR 368 (392)
Q Consensus 359 f~~i~w~~~~ 368 (392)
|++.......
T Consensus 176 f~i~~~~~~~ 185 (218)
T 3mq2_A 176 WKLADCRYLE 185 (218)
T ss_dssp EEEEEEEEEC
T ss_pred CCceeeeccc
Confidence 9998877654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=114.20 Aligned_cols=119 Identities=11% Similarity=0.116 Sum_probs=83.1
Q ss_pred EEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHh----cCCccEEEeccCc----CCCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIAS----RGVVPLYISISQR----LPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~----rg~i~~~~~d~~~----Lpf~d~sFDlV~s~~~l 308 (392)
.|||+|||+|.++..+++. + ..|+++| ++..+.+.+.+ ...+.++.+|+.. +++. ++||+|+
T Consensus 77 ~VLDlGcG~G~~~~~la~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~----- 148 (230)
T 1fbn_A 77 KILYLGASAGTTPSHVADIADKGIVYAIE--YAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIY----- 148 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTSEEEEEE--SCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEE-----
T ss_pred EEEEEcccCCHHHHHHHHHcCCcEEEEEE--CCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEE-----
Confidence 3499999999999999986 3 6788855 53444433322 2346788888887 7776 7899999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeeccc--cc-----c-hHHHHHHHHHHcCCeEEEEEEe
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV--GA-----Q-LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~--~~-----~-l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+++..+...+.+++++.++|||||++++. +... .. . ..+++. +++++||+.++....
T Consensus 149 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~ 213 (230)
T 1fbn_A 149 EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDI 213 (230)
T ss_dssp ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEEC
T ss_pred EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEcc
Confidence 23334444467899999999999999987 3211 11 1 235566 889999998876643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=108.61 Aligned_cols=117 Identities=16% Similarity=0.174 Sum_probs=83.2
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC---CccEEEecc-CcCCCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISIS-QRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~-~~Lpf~d~sFDlV~s~~~l 308 (392)
.|||+|||+|.++..+++. +..+++ +|++....+.+.+ .+ .+ ++.++. +.++..+++||+|++..++
T Consensus 28 ~vldiG~G~G~~~~~l~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 28 TLWDIGGGSGSIAIEWLRSTPQTTAVC--FEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEESTTTTHHHHHHHTTSSSEEEEE--ECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred eEEEeCCCCCHHHHHHHHHCCCCeEEE--EeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCcc
Confidence 3499999999999999986 567777 5564444443332 23 24 666665 3444434899999999988
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
++ ..+++++.++|||||++++..+... ....+.+.+++.|++..+.....
T Consensus 105 ~~-------~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 154 (178)
T 3hm2_A 105 TA-------PGVFAAAWKRLPVGGRLVANAVTVE---SEQMLWALRKQFGGTISSFAISH 154 (178)
T ss_dssp TC-------TTHHHHHHHTCCTTCEEEEEECSHH---HHHHHHHHHHHHCCEEEEEEEEE
T ss_pred cH-------HHHHHHHHHhcCCCCEEEEEeeccc---cHHHHHHHHHHcCCeeEEEEeec
Confidence 66 2589999999999999998875432 23347778889998887766554
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-11 Score=117.49 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=88.9
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhcC-CccEE-EeccCcCC---CCCCcccEEEEcccccccC
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASRG-VVPLY-ISISQRLP---FFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~rg-~i~~~-~~d~~~Lp---f~d~sFDlV~s~~~l~~~~ 312 (392)
+|||+|||||.++..+++.+. .|+++|++ ..+.+.+.++. .+... ..++..++ ++..+||+|++..+++++
T Consensus 88 ~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs--~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl- 164 (291)
T 3hp7_A 88 ITIDIGASTGGFTDVMLQNGAKLVYAVDVG--TNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISL- 164 (291)
T ss_dssp EEEEETCTTSHHHHHHHHTTCSEEEEECSS--SSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCG-
T ss_pred EEEecCCCccHHHHHHHhCCCCEEEEEECC--HHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhhH-
Confidence 459999999999999999875 89995544 44444433322 11111 22333333 244569999998887654
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEE---eeccccc---------------chHHHHHHHHHHcCCeEEEEEEeeccCCCC
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLD---HFFCVGA---------------QLEDVYVPLIESVGFNKLKWVVGRKLDRGP 374 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~---~~~~~~~---------------~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~ 374 (392)
..+|.+++|+|||||.|++. .|-...+ ...+.+.++++++||....+..... .|.
T Consensus 165 -----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi--~g~ 237 (291)
T 3hp7_A 165 -----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPI--QGG 237 (291)
T ss_dssp -----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSS--CCG
T ss_pred -----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC--CCC
Confidence 35899999999999999886 2211111 1255688889999999888765432 233
Q ss_pred cccceeeEEEEEc
Q 047630 375 ELREMYLSALLEK 387 (392)
Q Consensus 375 ~~~e~ylsai~~K 387 (392)
+.+.-|+ ..++|
T Consensus 238 ~gn~e~l-~~~~~ 249 (291)
T 3hp7_A 238 HGNIEFL-AHLEK 249 (291)
T ss_dssp GGCCCEE-EEEEE
T ss_pred CcCHHHH-HHhhh
Confidence 3444454 34455
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-12 Score=111.00 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=84.5
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCC-Ccc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFD-NTL 299 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d-~sF 299 (392)
.+.+.++.+| ||+|||+|.++..+++.+..++++| ++....+.+.+ .+ .+.+..+|... ++++ ++|
T Consensus 28 ~~~~~~~~~v---ldiG~G~G~~~~~l~~~~~~v~~~D--~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~ 101 (192)
T 1l3i_A 28 LAEPGKNDVA---VDVGCGTGGVTLELAGRVRRVYAID--RNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDI 101 (192)
T ss_dssp HHCCCTTCEE---EEESCTTSHHHHHHHTTSSEEEEEE--SCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCE
T ss_pred hcCCCCCCEE---EEECCCCCHHHHHHHHhcCEEEEEE--CCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCC
Confidence 3344455555 9999999999999999888888855 43344443332 22 36777787665 3333 589
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeE
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~ 361 (392)
|+|++..+++++ ..+++++.++|+|||.+++..... .....+.+.+++.||..
T Consensus 102 D~v~~~~~~~~~------~~~l~~~~~~l~~gG~l~~~~~~~---~~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 102 DIAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAILL---ETKFEAMECLRDLGFDV 154 (192)
T ss_dssp EEEEESCCTTCH------HHHHHHHHHTEEEEEEEEEEECBH---HHHHHHHHHHHHTTCCC
T ss_pred CEEEECCchHHH------HHHHHHHHHhcCCCcEEEEEecCc---chHHHHHHHHHHCCCce
Confidence 999998876543 579999999999999999886532 22345778899999943
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-11 Score=111.62 Aligned_cols=124 Identities=12% Similarity=0.086 Sum_probs=80.2
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhH----HHHHhcCCccEEEeccCcC----CCCCCcccE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFN----NFIASRGVVPLYISISQRL----PFFDNTLDI 301 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~----~~aa~rg~i~~~~~d~~~L----pf~d~sFDl 301 (392)
.++.+| ||+|||+|.++..+++.. ..|+| +|++..+. +.+.++..+.++++|.... ++. ++||+
T Consensus 56 ~~g~~V---LDlGcGtG~~~~~la~~~~~~~V~g--vD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~ 129 (210)
T 1nt2_A 56 RGDERV---LYLGAASGTTVSHLADIVDEGIIYA--VEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDL 129 (210)
T ss_dssp CSSCEE---EEETCTTSHHHHHHHHHTTTSEEEE--ECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEE
T ss_pred CCCCEE---EEECCcCCHHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeE
Confidence 344455 999999999999998853 57888 55544322 2333344467777877653 444 78999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc---cccchHHHH---HHHHHHcCCeEEEEEEe
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC---VGAQLEDVY---VPLIESVGFNKLKWVVG 367 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~---~~~~l~~~l---~~ll~~aGf~~i~w~~~ 367 (392)
|++.. . .+.....++++++|+|||||+|++..... ......+.+ .+.++++ |+.++....
T Consensus 130 V~~~~-~----~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 130 IYQDI-A----QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSL 195 (210)
T ss_dssp EEECC-C----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred EEEec-c----ChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecC
Confidence 99873 1 22344457999999999999999884221 111112222 2237777 998876643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=108.61 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=83.5
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC--C--ccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG--V--VPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg--~--i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||+|||+|.++..+++.+..++++|++ ....+.+.+ .+ . +.++.+|... ++.+++||+|++...+++
T Consensus 55 ~vLdiG~G~G~~~~~~~~~~~~v~~~D~~--~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~ 131 (194)
T 1dus_A 55 DILDLGCGYGVIGIALADEVKSTTMADIN--RRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRA 131 (194)
T ss_dssp EEEEETCTTSHHHHHHGGGSSEEEEEESC--HHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTT
T ss_pred eEEEeCCCCCHHHHHHHHcCCeEEEEECC--HHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCccc
Confidence 34999999999999999988899985544 344433222 23 1 6788888776 445778999999887764
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.......+++++.++|||||.+++....... ...+.+.+++. |..+++
T Consensus 132 --~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~---~~~~~~~l~~~-~~~~~~ 179 (194)
T 1dus_A 132 --GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG---AKSLAKYMKDV-FGNVET 179 (194)
T ss_dssp --CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH---HHHHHHHHHHH-HSCCEE
T ss_pred --chhHHHHHHHHHHHHcCCCCEEEEEECCCCC---hHHHHHHHHHH-hcceEE
Confidence 2355678999999999999999998765432 22355566665 544443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.3e-12 Score=111.81 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=90.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCC-CCCCcc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLP-FFDNTL 299 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lp-f~d~sF 299 (392)
+.++.+| ||+|||+|.++..+++. +..+++ +|++....+.+. +.+ .+.++++|+..++ +.+++|
T Consensus 20 ~~~~~~v---LDlGcG~G~~~~~l~~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f 94 (197)
T 3eey_A 20 VKEGDTV---VDATCGNGNDTAFLASLVGENGRVFG--FDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPV 94 (197)
T ss_dssp CCTTCEE---EESCCTTSHHHHHHHHHHCTTCEEEE--ECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCE
T ss_pred CCCCCEE---EEcCCCCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCc
Confidence 4455555 99999999999999985 247888 555444444332 222 3788899988876 667899
Q ss_pred cEEEEcccccc------cCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--chHHHHHHHH---HHcCCeEEEEEEee
Q 047630 300 DIVHSMHVLSN------WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--QLEDVYVPLI---ESVGFNKLKWVVGR 368 (392)
Q Consensus 300 DlV~s~~~l~~------~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--~l~~~l~~ll---~~aGf~~i~w~~~~ 368 (392)
|+|++...+.. .........+++++.++|||||++++..+..... ...+.+.+.+ ...+|..+++....
T Consensus 95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~ 174 (197)
T 3eey_A 95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFIN 174 (197)
T ss_dssp EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETT
T ss_pred eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEecc
Confidence 99999876521 1122345579999999999999999987654221 1123344444 34568888887664
Q ss_pred c
Q 047630 369 K 369 (392)
Q Consensus 369 k 369 (392)
+
T Consensus 175 ~ 175 (197)
T 3eey_A 175 Q 175 (197)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-11 Score=113.85 Aligned_cols=136 Identities=11% Similarity=0.068 Sum_probs=92.5
Q ss_pred HHHHHHhhC-CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCC-
Q 047630 224 SIDEVLATK-KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLP- 293 (392)
Q Consensus 224 lI~~ll~l~-~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lp- 293 (392)
++...+.+. ++.+| ||+|||+|.++..+++++. .+++ +|++....+.+. ..+ .+.++.+|+..++
T Consensus 39 ll~~~~~~~~~~~~v---LDlG~G~G~~~~~la~~~~~~v~g--vDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~ 113 (259)
T 3lpm_A 39 LLAKFSYLPIRKGKI---IDLCSGNGIIPLLLSTRTKAKIVG--VEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD 113 (259)
T ss_dssp HHHHHCCCCSSCCEE---EETTCTTTHHHHHHHTTCCCEEEE--ECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG
T ss_pred HHHHHhcCCCCCCEE---EEcCCchhHHHHHHHHhcCCcEEE--EECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh
Confidence 344444444 44555 9999999999999999766 7888 555444443322 223 3688889988775
Q ss_pred -CCCCcccEEEEccccccc-----------------CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHH
Q 047630 294 -FFDNTLDIVHSMHVLSNW-----------------IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIE 355 (392)
Q Consensus 294 -f~d~sFDlV~s~~~l~~~-----------------~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~ 355 (392)
+++++||+|+++..+... .....++.+++++.++|||||+|++.... +. ..++...++
T Consensus 114 ~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~-~~~~~~~l~ 189 (259)
T 3lpm_A 114 LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP---ER-LLDIIDIMR 189 (259)
T ss_dssp TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT---TT-HHHHHHHHH
T ss_pred hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH---HH-HHHHHHHHH
Confidence 457899999997554322 01134567999999999999999985322 22 334777888
Q ss_pred HcCCeEEEEEEee
Q 047630 356 SVGFNKLKWVVGR 368 (392)
Q Consensus 356 ~aGf~~i~w~~~~ 368 (392)
+.||...+...+.
T Consensus 190 ~~~~~~~~~~~v~ 202 (259)
T 3lpm_A 190 KYRLEPKRIQFVH 202 (259)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HCCCceEEEEEee
Confidence 9999887766553
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=113.58 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=84.0
Q ss_pred EEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCC--CCCCcccEEEEccccc
Q 047630 240 GLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLP--FFDNTLDIVHSMHVLS 309 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lp--f~d~sFDlV~s~~~l~ 309 (392)
|||||||+|.++..+++. +..++| +|++......+.+ .+ .+.++.+|+..++ +++++||.|++.+...
T Consensus 42 vLDiGcG~G~~~~~la~~~p~~~v~g--iD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p 119 (213)
T 2fca_A 42 HIEVGTGKGQFISGMAKQNPDINYIG--IELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP 119 (213)
T ss_dssp EEEECCTTSHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred EEEEecCCCHHHHHHHHHCCCCCEEE--EEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCCC
Confidence 499999999999999986 567888 5564455443332 33 3688889988876 7788999998865432
Q ss_pred ccCCc------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 310 NWIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 310 ~~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
|... .....+++++.++|||||.|++... .....+...+.+++.||.....
T Consensus 120 -~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td---~~~~~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 120 -WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD---NRGLFEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp -CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES---CHHHHHHHHHHHHHHTCEEEEE
T ss_pred -CcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC---CHHHHHHHHHHHHHCCCccccc
Confidence 2111 0125689999999999999988752 2233344667788889987653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=114.01 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=83.7
Q ss_pred EEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchh----HHHHHhcCCccEEEeccCc---CCCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPF----NNFIASRGVVPLYISISQR---LPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~----~~~aa~rg~i~~~~~d~~~---Lpf~d~sFDlV~s~~~l 308 (392)
+|||+|||+|.++..+++. +..+++ +|++..+ .+.+.++..+.++.+|+.. +++.+++||+|++...
T Consensus 80 ~vLDlG~G~G~~~~~la~~~g~~~~v~g--vD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~- 156 (233)
T 2ipx_A 80 KVLYLGAASGTTVSHVSDIVGPDGLVYA--VEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA- 156 (233)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEE--ECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC-
T ss_pred EEEEEcccCCHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC-
Confidence 3499999999999999985 367888 5554332 2233343457888898876 5666789999999554
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeeccc---ccc----hHHHHHHHHHHcCCeEEEEEEe
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV---GAQ----LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~---~~~----l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
.......++.++.++|||||++++...... ... ..++ .++++++||+.++....
T Consensus 157 ----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~~~ 217 (233)
T 2ipx_A 157 ----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQLTL 217 (233)
T ss_dssp ----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEEEC
T ss_pred ----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEEec
Confidence 223434678999999999999999643211 001 2222 57788999999886543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.30 E-value=7.7e-12 Score=110.32 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=79.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC--CccEEEeccCcCCC---CCCcccEEEEc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG--VVPLYISISQRLPF---FDNTLDIVHSM 305 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg--~i~~~~~d~~~Lpf---~d~sFDlV~s~ 305 (392)
+.++.++ ||+|||. ++ +|++..+.+.+.++. .+.+.++|++.+++ ++++||+|++.
T Consensus 10 ~~~g~~v---L~~~~g~--------------v~--vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 10 ISAGQFV---AVVWDKS--------------SP--VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp CCTTSEE---EEEECTT--------------SC--HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred CCCCCEE---EEecCCc--------------ee--eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEEC
Confidence 4455666 9999996 12 555344444444432 37899999999987 78999999999
Q ss_pred cccccc-CCchhHHHHHHHHHHcccCCcEEEEEeeccccc------chHHHHHHHHHHcCC
Q 047630 306 HVLSNW-IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------QLEDVYVPLIESVGF 359 (392)
Q Consensus 306 ~~l~~~-~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------~l~~~l~~ll~~aGf 359 (392)
.++||+ .+. ..++++++|+|||||+|++.+...... ...+++.++++++||
T Consensus 71 ~~l~~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 71 LVPGSTTLHS---AEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp CSTTCCCCCC---HHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred ChhhhcccCH---HHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 999886 333 469999999999999999976432211 114679999999999
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=117.47 Aligned_cols=104 Identities=10% Similarity=0.076 Sum_probs=76.0
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC-----CCCcccEEEE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF-----FDNTLDIVHS 304 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf-----~d~sFDlV~s 304 (392)
.+.++.+| ||||||+|.++..+++++..|+++| ++..+.+.+.++-...++..+...++. .+++||+|++
T Consensus 42 ~l~~g~~V---LDlGcGtG~~a~~La~~g~~V~gvD--~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~ 116 (261)
T 3iv6_A 42 NIVPGSTV---AVIGASTRFLIEKALERGASVTVFD--FSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLN 116 (261)
T ss_dssp TCCTTCEE---EEECTTCHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred CCCCcCEE---EEEeCcchHHHHHHHhcCCEEEEEE--CCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEE
Confidence 34455555 9999999999999999999999954 544555555444211233444444433 2578999999
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
..+++|+ ..++...+++++.++| |||+++++...
T Consensus 117 ~~~l~~~-~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 117 DRLINRF-TTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp ESCGGGS-CHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred hhhhHhC-CHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 9999886 4456678999999999 99999988644
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-12 Score=123.05 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=90.5
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
..|||||||+|.++..+++. +.++++ +|+ ....+.+.+...+.+..+|+.. ++++ ||+|++..++|+|.+ .
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d-~ 262 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETFPKLKCIV--FDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTD-K 262 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCH-H
T ss_pred ceEEEeCCCccHHHHHHHHHCCCCeEEE--eeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCH-H
Confidence 34599999999999999985 456777 555 4333333333347888998865 5553 999999999999743 3
Q ss_pred hHHHHHHHHHHcccC---CcEEEEEeeccccc------------------------chHHHHHHHHHHcCCeEEEEEE
Q 047630 316 LLHFLMFDIYRVLRP---GGLFWLDHFFCVGA------------------------QLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 316 ~l~~~L~el~RvLKP---GG~lii~~~~~~~~------------------------~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
....+|++++|+||| ||++++.++..... ...++|.++++++||+.++...
T Consensus 263 ~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 263 DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 445899999999999 99998887542211 1146799999999999988764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-11 Score=128.20 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=79.3
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHh----------cC--CccEEEeccCcCCCC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIAS----------RG--VVPLYISISQRLPFF 295 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~----------rg--~i~~~~~d~~~Lpf~ 295 (392)
..++.+| ||||||+|.++..|++.+ ..|+|+| ++..+.+.+.+ .+ .+.++++|+..+++.
T Consensus 719 ~~~g~rV---LDVGCGTG~lai~LAr~g~p~a~VtGVD--IS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~ 793 (950)
T 3htx_A 719 ESSASTL---VDFGCGSGSLLDSLLDYPTSLQTIIGVD--ISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSR 793 (950)
T ss_dssp HSCCSEE---EEETCSSSHHHHHHTSSCCCCCEEEEEE--SCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTT
T ss_pred ccCCCEE---EEECCCCCHHHHHHHHhCCCCCeEEEEE--CCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcc
Confidence 3345555 999999999999999987 6888855 53444444433 12 378999999999999
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+++||+|++..+++|+ ++.....+++++.|+|||| .+++..
T Consensus 794 d~sFDlVV~~eVLeHL-~dp~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 794 LHDVDIGTCLEVIEHM-EEDQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp SCSCCEEEEESCGGGS-CHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred cCCeeEEEEeCchhhC-ChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 9999999999999996 4455567999999999999 776665
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=114.82 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=87.0
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-CC--EEEEEecCCCchhHHHHH----hcCCccEEEeccC---cCCCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-NI--TIVTTSMNLNGPFNNFIA----SRGVVPLYISISQ---RLPFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g~--~vvg~~iD~~a~~~~~aa----~rg~i~~~~~d~~---~Lpf~d~sFD 300 (392)
+.++.+| ||+|||+|.++..+++. |. .|++ +|++..+.+.+. +++.+..+.++.. ..++..+++|
T Consensus 75 ikpG~~V---ldlG~G~G~~~~~la~~VG~~G~V~a--vD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 75 VKEGDRI---LYLGIASGTTASHMSDIIGPRGRIYG--VEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCTTCEE---EEETCTTSHHHHHHHHHHCTTCEEEE--EECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred CCCCCEE---EEecCcCCHHHHHHHHHhCCCceEEE--EeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEE
Confidence 5677777 99999999999999983 44 5777 556445554332 2344666777644 4567788999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc------cccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC------VGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~------~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+|++.... + ++.+.++.+++|+|||||++++..... ......+...+.++++||+.++....
T Consensus 150 vVf~d~~~-~----~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L 217 (233)
T 4df3_A 150 GLYADVAQ-P----EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHL 217 (233)
T ss_dssp EEEECCCC-T----THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEeccC-C----hhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 99875432 2 345679999999999999998875322 11222333556788999999876543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-11 Score=104.96 Aligned_cols=118 Identities=9% Similarity=0.028 Sum_probs=85.2
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCcccEE
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+...++.++ ||+|||+|.++..+++.+..++++|++ ....+.+.+ .+ .+.++.+|... ++++++||+|
T Consensus 31 ~~~~~~~~v---LdiG~G~G~~~~~l~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i 104 (183)
T 2yxd_A 31 LNLNKDDVV---VDVGCGSGGMTVEIAKRCKFVYAIDYL--DGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKA 104 (183)
T ss_dssp HCCCTTCEE---EEESCCCSHHHHHHHTTSSEEEEEECS--HHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEE
T ss_pred cCCCCCCEE---EEeCCCCCHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEE
Confidence 334444455 999999999999999988889995544 344443332 23 36788888776 6677899999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
++..+ .....+++++.++ |||.+++..... +. ...+.+.+++.||+....
T Consensus 105 ~~~~~-------~~~~~~l~~~~~~--~gG~l~~~~~~~--~~-~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 105 FIGGT-------KNIEKIIEILDKK--KINHIVANTIVL--EN-AAKIINEFESRGYNVDAV 154 (183)
T ss_dssp EECSC-------SCHHHHHHHHHHT--TCCEEEEEESCH--HH-HHHHHHHHHHTTCEEEEE
T ss_pred EECCc-------ccHHHHHHHHhhC--CCCEEEEEeccc--cc-HHHHHHHHHHcCCeEEEE
Confidence 99887 2345789999999 999999987432 22 344788899999866544
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=122.20 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=89.3
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
.|||||||+|.++..+++.. ..+++ +|+ +...+.+.+...+.++.+|... +++ .||+|++..++|+|.+ ..
T Consensus 196 ~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d-~~ 268 (358)
T 1zg3_A 196 SLVDVGGGTGGVTKLIHEIFPHLKCTV--FDQ-PQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWND-EQ 268 (358)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTSEEEE--EEC-HHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCH-HH
T ss_pred EEEEECCCcCHHHHHHHHHCCCCeEEE--ecc-HHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCH-HH
Confidence 45999999999999999964 45655 555 3333222222237888888876 665 4999999999999743 34
Q ss_pred HHHHHHHHHHcccC---CcEEEEEeeccccc-------------------------chHHHHHHHHHHcCCeEEEEEE
Q 047630 317 LHFLMFDIYRVLRP---GGLFWLDHFFCVGA-------------------------QLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 317 l~~~L~el~RvLKP---GG~lii~~~~~~~~-------------------------~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
...+|++++++||| ||++++.++..... ...++|.++++++||+.++...
T Consensus 269 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 45899999999999 99998877542210 0256799999999999988764
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=121.32 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhC-----CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHH----HhcC-CccEEEeccC
Q 047630 221 LDFSIDEVLATK-----KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFI----ASRG-VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l~-----~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~a----a~rg-~i~~~~~d~~ 290 (392)
.+.+++.+.... ++.+| ||+|||+|.++..+++.+..++++|+|. ...+.+ ...+ .+.++.+|+.
T Consensus 216 t~~ll~~l~~~l~~~~~~~~~V---LDlGcG~G~~~~~la~~g~~V~gvDis~--~al~~A~~n~~~~~~~v~~~~~D~~ 290 (381)
T 3dmg_A 216 SLLLLEALQERLGPEGVRGRQV---LDLGAGYGALTLPLARMGAEVVGVEDDL--ASVLSLQKGLEANALKAQALHSDVD 290 (381)
T ss_dssp HHHHHHHHHHHHCTTTTTTCEE---EEETCTTSTTHHHHHHTTCEEEEEESBH--HHHHHHHHHHHHTTCCCEEEECSTT
T ss_pred HHHHHHHHHHhhcccCCCCCEE---EEEeeeCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEcchh
Confidence 455666554432 33445 9999999999999999999999966543 333322 2233 2688999999
Q ss_pred cCCCCCCcccEEEEcccccccC--CchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 291 RLPFFDNTLDIVHSMHVLSNWI--PTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 291 ~Lpf~d~sFDlV~s~~~l~~~~--~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+..+++||+|+++..+++.. .......+++++.++|||||++++..
T Consensus 291 ~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 291 EALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp TTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 8887778999999998887621 23566789999999999999999875
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=112.68 Aligned_cols=128 Identities=10% Similarity=0.033 Sum_probs=83.3
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhH----HHHHhcCCccEEEeccCcCC---CCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFN----NFIASRGVVPLYISISQRLP---FFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~----~~aa~rg~i~~~~~d~~~Lp---f~d~sFD 300 (392)
+.++.+| ||+|||+|.++..+++. .-.|+++| ++..+. +.+.++..+.++++|+.... ...++||
T Consensus 74 l~~g~~V---LDlG~GtG~~t~~la~~v~~~G~V~avD--~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 74 IRKGTKV---LYLGAASGTTISHVSDIIELNGKAYGVE--FSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CCTTCEE---EEETCTTSHHHHHHHHHHTTTSEEEEEE--CCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEE
T ss_pred CCCCCEE---EEEeecCCHHHHHHHHHhCCCCEEEEEE--CcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceE
Confidence 4455555 99999999999999884 34788855 533332 23444455788889876542 1246899
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec-c-----cccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF-C-----VGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~-~-----~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+|++..+. +...+.++..+.++|||||+|++.... + ..++..+...+.+++.||+.++-....
T Consensus 149 ~I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~ 217 (232)
T 3id6_C 149 VLYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLD 217 (232)
T ss_dssp EEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECT
T ss_pred EEEecCCC-----hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 99987553 223334556677799999999887321 1 112222345567788899998866443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-11 Score=111.31 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=78.8
Q ss_pred EEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhH-HHH---Hh----cC--CccEEEeccCcCCCC-CCcccEEEEcc
Q 047630 240 GLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFN-NFI---AS----RG--VVPLYISISQRLPFF-DNTLDIVHSMH 306 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~-~~a---a~----rg--~i~~~~~d~~~Lpf~-d~sFDlV~s~~ 306 (392)
|||||||+|.++..+++ .+..|+| +|++.+.+ +.+ .+ .+ .+.+.+++++.+|.. .+.+|.|++++
T Consensus 28 vLDiGCG~G~~~~~la~~~~~~~v~G--vD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~~ 105 (225)
T 3p2e_A 28 HIDLGTGDGRNIYKLAINDQNTFYIG--IDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILF 105 (225)
T ss_dssp EEEETCTTSHHHHHHHHTCTTEEEEE--ECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEES
T ss_pred EEEEeccCcHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEeC
Confidence 49999999999999995 4566777 55543443 222 22 23 267888999888642 24455555544
Q ss_pred ccccc--CCchhHHHHHHHHHHcccCCcEEEEEeecccc---------------cch--HHHHHHHHHHcCCeEEEEEEe
Q 047630 307 VLSNW--IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------------AQL--EDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 307 ~l~~~--~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------------~~l--~~~l~~ll~~aGf~~i~w~~~ 367 (392)
...+. ........++++++|+|||||.|++....... ... .+++.++++++||++......
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~~~ 185 (225)
T 3p2e_A 106 PWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKEL 185 (225)
T ss_dssp CCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEEEEE
T ss_pred CCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeeeec
Confidence 32110 00001135899999999999999882211100 000 123888999999998887755
Q ss_pred e
Q 047630 368 R 368 (392)
Q Consensus 368 ~ 368 (392)
.
T Consensus 186 ~ 186 (225)
T 3p2e_A 186 D 186 (225)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=109.82 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=92.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC-------C----Cccc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF-------D----NTLD 300 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~-------d----~sFD 300 (392)
.++.+| ||+|||+|.++..+++++..|+|+|++...+ ...+.++++|+...+.. . ++||
T Consensus 24 ~~g~~V---LDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D 93 (191)
T 3dou_A 24 RKGDAV---IEIGSSPGGWTQVLNSLARKIISIDLQEMEE-------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVD 93 (191)
T ss_dssp CTTCEE---EEESCTTCHHHHHHTTTCSEEEEEESSCCCC-------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEE
T ss_pred CCCCEE---EEEeecCCHHHHHHHHcCCcEEEEecccccc-------CCCeEEEEccccCHHHHHHHHHHhhcccCCcce
Confidence 344455 9999999999999999988999977664211 12378999998876521 1 4899
Q ss_pred EEEEcccccccC--------CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCC
Q 047630 301 IVHSMHVLSNWI--------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDR 372 (392)
Q Consensus 301 lV~s~~~l~~~~--------~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~ 372 (392)
+|++........ .....+.++.++.++|||||.|++..+.... ...+...++. .|..++...-...
T Consensus 94 ~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~---~~~~~~~l~~-~F~~v~~~kP~as-- 167 (191)
T 3dou_A 94 DVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM---TNDFIAIWRK-NFSSYKISKPPAS-- 167 (191)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH---HHHHHHHHGG-GEEEEEEECC-----
T ss_pred EEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC---HHHHHHHHHH-hcCEEEEECCCCc--
Confidence 999975432110 0122357889999999999999988775543 2235556654 4888876532211
Q ss_pred CCcccceeeEEEEEcC
Q 047630 373 GPELREMYLSALLEKP 388 (392)
Q Consensus 373 ~~~~~e~ylsai~~Kp 388 (392)
.....|.|+.+.-.|.
T Consensus 168 R~~s~E~y~v~~~~~~ 183 (191)
T 3dou_A 168 RGSSSEIYIMFFGFKA 183 (191)
T ss_dssp ---CCEEEEEEEEECC
T ss_pred cCCCceEEEEEeeecc
Confidence 1256789986655554
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=117.44 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=76.0
Q ss_pred EEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc-----------C--CccEEEeccCcCC----CC--CCc
Q 047630 239 IGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR-----------G--VVPLYISISQRLP----FF--DNT 298 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r-----------g--~i~~~~~d~~~Lp----f~--d~s 298 (392)
.|||+|||+|.++..+++. +..++++| ++..+.+.+.++ + .+.++++|...++ ++ +++
T Consensus 37 ~VLDlGcG~G~~~~~l~~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 114 (313)
T 3bgv_A 37 TVLDLGCGKGGDLLKWKKGRINKLVCTD--IADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC 114 (313)
T ss_dssp EEEEETCTTTTTHHHHHHTTCSEEEEEE--SCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred EEEEECCCCcHHHHHHHhcCCCEEEEEe--CCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence 3499999999999999875 56888855 534444433222 1 3678899988876 53 459
Q ss_pred ccEEEEccccccc-CCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 299 LDIVHSMHVLSNW-IPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 299 FDlV~s~~~l~~~-~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
||+|++..++|+. .+..+...+++++.|+|||||+|++..+
T Consensus 115 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 115 FDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp EEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 9999999999775 4656777899999999999999988764
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=121.05 Aligned_cols=102 Identities=16% Similarity=0.260 Sum_probs=78.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC---CccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+.++.+| ||||||+|.++..+++.+. .|+|+|++ ++.. .+...+ .+.++.++++.+++++++||+|
T Consensus 64 ~~~~~~V---LDvGcG~G~~~~~la~~g~~~v~gvD~s---~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 137 (349)
T 3q7e_A 64 LFKDKVV---LDVGSGTGILCMFAAKAGARKVIGIECS---SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDII 137 (349)
T ss_dssp HHTTCEE---EEESCTTSHHHHHHHHTTCSEEEEEECS---THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEE
T ss_pred cCCCCEE---EEEeccchHHHHHHHHCCCCEEEEECcH---HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEE
Confidence 3444555 9999999999999999876 89985554 3333 222333 2789999999999999999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
++....+.+.....++.++.++.|+|||||+++...
T Consensus 138 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 173 (349)
T 3q7e_A 138 ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR 173 (349)
T ss_dssp EECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred EEccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence 998765555455677789999999999999996443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=118.56 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=75.7
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHH----HhcC---CccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFI----ASRG---VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~a----a~rg---~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+.++.+| ||||||+|.++..+++.+. .++++|++ ++.+.+ .+.+ .+.++.+++..+++++++||+|
T Consensus 62 ~~~~~~V---LDiGcGtG~ls~~la~~g~~~v~gvD~s---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 135 (340)
T 2fyt_A 62 IFKDKVV---LDVGCGTGILSMFAAKAGAKKVLGVDQS---EILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI 135 (340)
T ss_dssp GTTTCEE---EEETCTTSHHHHHHHHTTCSEEEEEESS---THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred hcCCCEE---EEeeccCcHHHHHHHHcCCCEEEEEChH---HHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEE
Confidence 4454545 9999999999999999875 88886654 233322 2222 4788999999999988999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii 336 (392)
++....+.+.....++.++.++.|+|||||+++.
T Consensus 136 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 136 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 9987433333446677899999999999999973
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.8e-11 Score=112.90 Aligned_cols=119 Identities=12% Similarity=0.188 Sum_probs=87.3
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHH----HhcCC---ccEEEeccCcCCCCCCcccEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFI----ASRGV---VPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~a----a~rg~---i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
.++.++ ||+|||+|.++..+++.+. .|++ +|++....+.+ ..++. +.++++|+..++. +++||+|+
T Consensus 124 ~~~~~V---LDlgcG~G~~~~~la~~~~~~V~~--vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi 197 (278)
T 2frn_A 124 KPDELV---VDMFAGIGHLSLPIAVYGKAKVIA--IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp CTTCEE---EETTCTTTTTHHHHHHHTCCEEEE--ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred CCCCEE---EEecccCCHHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEE
Confidence 345555 9999999999999999877 4888 55544444432 22332 6688999988876 78999999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc---ccchHHHHHHHHHHcCCeEEE
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV---GAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~---~~~l~~~l~~ll~~aGf~~i~ 363 (392)
+...... ..++.++.++|||||++++..+... ..+..+.+.+.++++||+...
T Consensus 198 ~~~p~~~-------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 198 MGYVVRT-------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ECCCSSG-------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ECCchhH-------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 8654221 3588999999999999999876532 234456688899999997654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=120.14 Aligned_cols=96 Identities=14% Similarity=0.265 Sum_probs=75.2
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
+|||||||+|.++..+++.+. .|+++|++ .+.+. +...+ .+.++.++++.++++ ++||+|++....+.
T Consensus 66 ~VLDlGcGtG~ls~~la~~g~~~V~gvD~s---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~ 141 (376)
T 3r0q_C 66 TVLDVGTGSGILAIWSAQAGARKVYAVEAT---KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYF 141 (376)
T ss_dssp EEEEESCTTTHHHHHHHHTTCSEEEEEESS---TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTT
T ss_pred EEEEeccCcCHHHHHHHhcCCCEEEEEccH---HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhhc
Confidence 349999999999999999887 89996654 33332 22333 278999999998877 88999999776655
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
......++.++.+++|+|||||++++..
T Consensus 142 l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 142 LLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp BTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred ccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 5455667789999999999999997665
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=104.42 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=84.7
Q ss_pred EEEEEcCCcchHHHHHHHc----CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC---------------------
Q 047630 239 IGLDIGGGVATFAVRMMER----NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------------------- 293 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~----g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------------------- 293 (392)
.|||+|||+|.++..++++ +..++|+|++... ....+.++++|+...+
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 97 (201)
T 2plw_A 25 IILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK 97 (201)
T ss_dssp EEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-------CCTTCEEEECCTTTTSSCCC-----------CHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-------CCCCceEEEccccchhhhhhccccccccccchhhHHH
Confidence 3499999999999999985 3578886655411 1123688889888776
Q ss_pred ----CCCCcccEEEEcccccccCC--chh------HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeE
Q 047630 294 ----FFDNTLDIVHSMHVLSNWIP--TTL------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 294 ----f~d~sFDlV~s~~~l~~~~~--~~~------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~ 361 (392)
+++++||+|++..++++... .+. ...+++++.++|||||.|++..+... .. ..+...++. .|..
T Consensus 98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~-~~l~~~l~~-~f~~ 173 (201)
T 2plw_A 98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS--QT-NNLKTYLKG-MFQL 173 (201)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST--TH-HHHHHHHHT-TEEE
T ss_pred HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC--CH-HHHHHHHHH-HHhe
Confidence 56789999999877654211 011 13488999999999999998765432 22 235555555 3776
Q ss_pred EEEEEeeccCCCCcccceeeEE
Q 047630 362 LKWVVGRKLDRGPELREMYLSA 383 (392)
Q Consensus 362 i~w~~~~k~d~~~~~~e~ylsa 383 (392)
+.+..... ......|.|+.+
T Consensus 174 v~~~~~~~--~r~~s~e~y~v~ 193 (201)
T 2plw_A 174 VHTTKPKA--SRNESREIYLVC 193 (201)
T ss_dssp EEECCCC-------CCEEEEEE
T ss_pred EEEECCcc--cCCcCceEEEEE
Confidence 66532211 112455777633
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=114.37 Aligned_cols=138 Identities=12% Similarity=0.071 Sum_probs=81.9
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhcCCccEEEe---ccCcC---CCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASRGVVPLYIS---ISQRL---PFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~---d~~~L---pf~d~sFDlV~s~~~l~~~ 311 (392)
+|||||||+|.++..+++.+. .|+|+|++. .+.+.+.++.. ..... ++..+ .+....||.+.+..++.++
T Consensus 40 ~VLDiGcGtG~~t~~la~~g~~~V~gvDis~--~ml~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l 116 (232)
T 3opn_A 40 TCLDIGSSTGGFTDVMLQNGAKLVYALDVGT--NQLAWKIRSDE-RVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL 116 (232)
T ss_dssp EEEEETCTTSHHHHHHHHTTCSEEEEECSSC--CCCCHHHHTCT-TEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG
T ss_pred EEEEEccCCCHHHHHHHhcCCCEEEEEcCCH--HHHHHHHHhCc-cccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH
Confidence 459999999999999999885 898855544 44444333321 11111 11111 1111124555554444443
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEe---eccccc---------------chHHHHHHHHHHcCCeEEEEEEeeccCCC
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDH---FFCVGA---------------QLEDVYVPLIESVGFNKLKWVVGRKLDRG 373 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~---~~~~~~---------------~l~~~l~~ll~~aGf~~i~w~~~~k~d~~ 373 (392)
..++.+++|+|||||.|++.. +....+ ...+++.++++++||+.+.+.......
T Consensus 117 ------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g-- 188 (232)
T 3opn_A 117 ------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKG-- 188 (232)
T ss_dssp ------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCB--
T ss_pred ------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCC--
Confidence 358999999999999998862 111100 125568899999999998887554322
Q ss_pred CcccceeeEEEEEcC
Q 047630 374 PELREMYLSALLEKP 388 (392)
Q Consensus 374 ~~~~e~ylsai~~Kp 388 (392)
...+..|+ ..++|.
T Consensus 189 ~~gn~e~l-~~~~~~ 202 (232)
T 3opn_A 189 GAGNVEFL-VHLLKD 202 (232)
T ss_dssp TTTBCCEE-EEEEES
T ss_pred CCCCHHHH-HHHhhc
Confidence 22333444 355663
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.7e-12 Score=112.42 Aligned_cols=138 Identities=13% Similarity=0.073 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhCCC-CcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----C-CccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKP-GTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~-~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~L 292 (392)
.+.+++.++..... ..-.+|||+|||+|.++..+++. +..++++|++. .+.+.+.++ + .+.++++|+..
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~d~~~- 90 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSM--DALAVARRNAERFGAVVDWAAADGIE- 90 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHHHHhCCceEEEEcchHh-
Confidence 44555555543211 12234499999999999999997 45788855543 333322222 2 25666777666
Q ss_pred CCCC-----CcccEEEEcccccccCC-----ch------------------hHHHHHHHHHHcccCCcE-EEEEeecccc
Q 047630 293 PFFD-----NTLDIVHSMHVLSNWIP-----TT------------------LLHFLMFDIYRVLRPGGL-FWLDHFFCVG 343 (392)
Q Consensus 293 pf~d-----~sFDlV~s~~~l~~~~~-----~~------------------~l~~~L~el~RvLKPGG~-lii~~~~~~~ 343 (392)
++.+ ++||+|+++..++.... .. ....+++++.++|||||+ +++....
T Consensus 91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--- 167 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH--- 167 (215)
T ss_dssp HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT---
T ss_pred hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC---
Confidence 5555 89999999765543211 00 116789999999999999 5544322
Q ss_pred cchHHHHHHHHH--HcCCeEEEEE
Q 047630 344 AQLEDVYVPLIE--SVGFNKLKWV 365 (392)
Q Consensus 344 ~~l~~~l~~ll~--~aGf~~i~w~ 365 (392)
...+.+.++++ +.||..+...
T Consensus 168 -~~~~~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 168 -NQADEVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp -SCHHHHHHHTGGGGGGTEECCEE
T ss_pred -ccHHHHHHHHHHhhcCCceEEEE
Confidence 12344777888 8999877644
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.6e-11 Score=105.61 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=75.1
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCC--CCCCcccEEE
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLP--FFDNTLDIVH 303 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lp--f~d~sFDlV~ 303 (392)
++.+| ||+|||+|.++..+++.+. .++++|+| ..+.+.+. ..+ .+.++++|+..++ +++++||+|+
T Consensus 44 ~~~~v---LDlgcG~G~~~~~~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~ 118 (189)
T 3p9n_A 44 TGLAV---LDLYAGSGALGLEALSRGAASVLFVESD--QRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVL 118 (189)
T ss_dssp TTCEE---EEETCTTCHHHHHHHHTTCSEEEEEECC--HHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEE
T ss_pred CCCEE---EEeCCCcCHHHHHHHHCCCCeEEEEECC--HHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEE
Confidence 44445 9999999999998888765 68885544 34443222 223 3788899987764 3478999999
Q ss_pred EcccccccCCchhHHHHHHHHHH--cccCCcEEEEEeecc
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYR--VLRPGGLFWLDHFFC 341 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~R--vLKPGG~lii~~~~~ 341 (392)
+...+++. .+..+.++.++.+ +|||||++++.....
T Consensus 119 ~~~p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 119 ADPPYNVD--SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp ECCCTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred ECCCCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 98876542 3556789999999 999999999987543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.6e-11 Score=111.91 Aligned_cols=119 Identities=16% Similarity=0.054 Sum_probs=85.5
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHH----HhcCC--ccEEEeccCcCCCC---CCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFI----ASRGV--VPLYISISQRLPFF---DNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~a----a~rg~--i~~~~~d~~~Lpf~---d~sFDlV~s~~~ 307 (392)
.|||||||+|..+..++.. +..|+++| ++..+.+.+ .+.+. +.+++++++.++.. +++||+|++..+
T Consensus 83 ~vLDiG~G~G~~~i~la~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~ 160 (249)
T 3g89_A 83 RVLDLGTGAGFPGLPLKIVRPELELVLVD--ATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV 160 (249)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS
T ss_pred EEEEEcCCCCHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc
Confidence 4599999999999999885 56888844 544444432 22332 78889998887653 489999999653
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
. .+..++.++.++|||||+|++..-....+++ ..+...++..||+..+....
T Consensus 161 ~-------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~-~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 161 A-------PLCVLSELLLPFLEVGGAAVAMKGPRVEEEL-APLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp C-------CHHHHHHHHGGGEEEEEEEEEEECSCCHHHH-TTHHHHHHHHTEEEEEEEEE
T ss_pred C-------CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHH-HHHHHHHHHcCCeEEEEEEe
Confidence 2 2356999999999999999876543333333 33677888999988776644
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-12 Score=119.44 Aligned_cols=135 Identities=13% Similarity=0.026 Sum_probs=91.6
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHH----HhcC---CccEEEeccCcCCC
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFI----ASRG---VVPLYISISQRLPF 294 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~a----a~rg---~i~~~~~d~~~Lpf 294 (392)
+.++..+....++.+| ||+|||+|.++..+++.+..|+++|++ ..+.+.+ ...+ .+.++++|+..++
T Consensus 67 ~~l~~~~~~~~~~~~v---LD~gcG~G~~~~~la~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 140 (241)
T 3gdh_A 67 EHIAGRVSQSFKCDVV---VDAFCGVGGNTIQFALTGMRVIAIDID--PVKIALARNNAEVYGIADKIEFICGDFLLLA- 140 (241)
T ss_dssp HHHHHHHHHHSCCSEE---EETTCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-
T ss_pred HHHHHHhhhccCCCEE---EECccccCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHcCCCcCeEEEECChHHhc-
Confidence 3344444444455666 999999999999999999999985544 3444322 2233 3788999988877
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec---------ccccchHHHHHHHHHHcCCeEEEEE
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF---------CVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~---------~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
++++||+|++...+++..... ..+.+++++|||||.+++.... .+.....+.+..++...|.-.+...
T Consensus 141 ~~~~~D~v~~~~~~~~~~~~~---~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~ 217 (241)
T 3gdh_A 141 SFLKADVVFLSPPWGGPDYAT---AETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQN 217 (241)
T ss_dssp GGCCCSEEEECCCCSSGGGGG---SSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEE
T ss_pred ccCCCCEEEECCCcCCcchhh---hHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEeh
Confidence 678999999999888753332 3677899999999998666421 1111123446667777676555544
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.9e-11 Score=111.44 Aligned_cols=137 Identities=12% Similarity=0.133 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~L 292 (392)
.+.+++.++...+ ..-..|||+|||+|.++..+++. +..+++ +|++....+.+.+ .+ .+.++++|....
T Consensus 95 te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~--vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~ 171 (276)
T 2b3t_A 95 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIA--VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA 171 (276)
T ss_dssp HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEE--ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG
T ss_pred HHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEEcchhhh
Confidence 6777777776532 11224599999999999999974 668888 5554444443222 23 367888887663
Q ss_pred CCCCCcccEEEEccccccc------------CCc----------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHH
Q 047630 293 PFFDNTLDIVHSMHVLSNW------------IPT----------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVY 350 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~------------~~~----------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l 350 (392)
+++++||+|+++..++.. .+. .....++.++.++|||||++++...... .+.+
T Consensus 172 -~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~ 246 (276)
T 2b3t_A 172 -LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ----GEAV 246 (276)
T ss_dssp -GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC----HHHH
T ss_pred -cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchH----HHHH
Confidence 446789999998544322 110 3456799999999999999998754332 3457
Q ss_pred HHHHHHcCCeEEEEE
Q 047630 351 VPLIESVGFNKLKWV 365 (392)
Q Consensus 351 ~~ll~~aGf~~i~w~ 365 (392)
.++++++||+.+...
T Consensus 247 ~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 247 RQAFILAGYHDVETC 261 (276)
T ss_dssp HHHHHHTTCTTCCEE
T ss_pred HHHHHHCCCcEEEEE
Confidence 888999999876544
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=113.12 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~ 291 (392)
...++..++...++.+| ||+|||+|..+..+++. +..+++ +|++....+.+. +.| .+.++++|+..
T Consensus 106 ~s~l~~~~l~~~~g~~V---LDlg~G~G~~t~~la~~~~~~~~v~a--vD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~ 180 (315)
T 1ixk_A 106 SSMYPPVALDPKPGEIV---ADMAAAPGGKTSYLAQLMRNDGVIYA--FDVDENRLRETRLNLSRLGVLNVILFHSSSLH 180 (315)
T ss_dssp HHHHHHHHHCCCTTCEE---EECCSSCSHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG
T ss_pred HHHHHHHHhCCCCCCEE---EEeCCCCCHHHHHHHHHhCCCCEEEE--EcCCHHHHHHHHHHHHHhCCCeEEEEECChhh
Confidence 45555666666666666 99999999999999984 357888 555444444322 224 36788888888
Q ss_pred CCCCCCcccEEEEccc------ccccC------Cch-------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHH
Q 047630 292 LPFFDNTLDIVHSMHV------LSNWI------PTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352 (392)
Q Consensus 292 Lpf~d~sFDlV~s~~~------l~~~~------~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ 352 (392)
++..+++||+|++... +++.. ... ....+|.++.++|||||++++.......++..+.+..
T Consensus 181 ~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~ 260 (315)
T 1ixk_A 181 IGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQW 260 (315)
T ss_dssp GGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred cccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHH
Confidence 7766778999998422 22100 001 1247999999999999999998754433444556778
Q ss_pred HHHHcCCeEEEE
Q 047630 353 LIESVGFNKLKW 364 (392)
Q Consensus 353 ll~~aGf~~i~w 364 (392)
++++.||+.+..
T Consensus 261 ~l~~~~~~~~~~ 272 (315)
T 1ixk_A 261 ALDNFDVELLPL 272 (315)
T ss_dssp HHHHSSEEEECC
T ss_pred HHhcCCCEEecC
Confidence 888889887654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-11 Score=115.73 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=77.8
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCccc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFD 300 (392)
+...++.+| ||||||+|.++..+++.+. .|+++|++ ++... +.+.+ .+.++.+++..+++++++||
T Consensus 34 ~~~~~~~~V---LDiGcGtG~ls~~la~~g~~~v~~vD~s---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 107 (328)
T 1g6q_1 34 KDLFKDKIV---LDVGCGTGILSMFAAKHGAKHVIGVDMS---SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVD 107 (328)
T ss_dssp HHHHTTCEE---EEETCTTSHHHHHHHHTCCSEEEEEESS---THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEE
T ss_pred HhhcCCCEE---EEecCccHHHHHHHHHCCCCEEEEEChH---HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCccc
Confidence 334455555 9999999999999999875 89886654 23332 22233 37889999999988888999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+|++....+.+.....++.++.++.|+|||||+++..
T Consensus 108 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred EEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 9999866555445566778999999999999999743
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-10 Score=111.13 Aligned_cols=119 Identities=14% Similarity=0.047 Sum_probs=84.7
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----c-C--CccEEEeccCcCCCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----R-G--VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----r-g--~i~~~~~d~~~Lpf~d~sFD 300 (392)
+.++.+| ||+|||+|.++..+++. +..+++ +|++....+.+.+ . | .+.+..+|+.. ++++++||
T Consensus 108 ~~~~~~V---LD~G~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD 181 (275)
T 1yb2_A 108 LRPGMDI---LEVGVGSGNMSSYILYALNGKGTLTV--VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYD 181 (275)
T ss_dssp CCTTCEE---EEECCTTSHHHHHHHHHHTTSSEEEE--ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEE
T ss_pred CCCcCEE---EEecCCCCHHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCcc
Confidence 4444455 99999999999999986 678888 5554444443322 2 3 36788888877 66778999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
+|++. ..+. ..+++++.++|||||++++..... +..+.+.+.+++.||+.++...
T Consensus 182 ~Vi~~-----~~~~---~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 182 AVIAD-----IPDP---WNHVQKIASMMKPGSVATFYLPNF---DQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp EEEEC-----CSCG---GGSHHHHHHTEEEEEEEEEEESSH---HHHHHHHHHSGGGTEEEEEEEE
T ss_pred EEEEc-----CcCH---HHHHHHHHHHcCCCCEEEEEeCCH---HHHHHHHHHHHHCCCeEEEEEE
Confidence 99982 2222 358999999999999999886432 1223466778889998876654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=108.45 Aligned_cols=119 Identities=11% Similarity=-0.003 Sum_probs=85.1
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhc-----C--CccEEEeccCcCCCCCCc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASR-----G--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~r-----g--~i~~~~~d~~~Lpf~d~s 298 (392)
+.+.++.+| ||+|||+|.++..+++. +..++++| ++....+.+.++ + .+.+..+|....++++++
T Consensus 92 ~~~~~~~~v---LdiG~G~G~~~~~l~~~~~~~~~v~~~D--~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 166 (258)
T 2pwy_A 92 LDLAPGMRV---LEAGTGSGGLTLFLARAVGEKGLVESYE--ARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAA 166 (258)
T ss_dssp TTCCTTCEE---EEECCTTSHHHHHHHHHHCTTSEEEEEE--SCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTC
T ss_pred cCCCCCCEE---EEECCCcCHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCC
Confidence 334455555 99999999999999986 57888855 434444433322 3 477888998888888889
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
||+|++. +.+. ..++.++.++|||||++++..... +. ...+.+.+++.||..++
T Consensus 167 ~D~v~~~-----~~~~---~~~l~~~~~~L~~gG~l~~~~~~~--~~-~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 167 YDGVALD-----LMEP---WKVLEKAALALKPDRFLVAYLPNI--TQ-VLELVRAAEAHPFRLER 220 (258)
T ss_dssp EEEEEEE-----SSCG---GGGHHHHHHHEEEEEEEEEEESCH--HH-HHHHHHHHTTTTEEEEE
T ss_pred cCEEEEC-----CcCH---HHHHHHHHHhCCCCCEEEEEeCCH--HH-HHHHHHHHHHCCCceEE
Confidence 9999983 2222 258999999999999998876432 22 23466678889998754
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-11 Score=110.94 Aligned_cols=119 Identities=20% Similarity=0.294 Sum_probs=78.1
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----------cC--CccEEEeccCc-CC--CCCCcccE
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----------RG--VVPLYISISQR-LP--FFDNTLDI 301 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----------rg--~i~~~~~d~~~-Lp--f~d~sFDl 301 (392)
.|||||||+|.++..|++. +..++| +|++..+.+.+.+ .+ .+.++.+|+.. ++ +++++||.
T Consensus 49 ~vLDiGcG~G~~~~~la~~~p~~~v~G--iDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 49 EFADIGCGYGGLLVELSPLFPDTLILG--LEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp EEEEETCTTCHHHHHHGGGSTTSEEEE--EESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred eEEEEccCCcHHHHHHHHHCCCCeEEE--EECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 4599999999999999986 457888 5554444432221 12 37889999886 66 78899999
Q ss_pred EEEcccccccCCch-----hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC-CeEE
Q 047630 302 VHSMHVLSNWIPTT-----LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG-FNKL 362 (392)
Q Consensus 302 V~s~~~l~~~~~~~-----~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG-f~~i 362 (392)
|++.+.-.+..... ....+++++.|+|||||.|++.... ........+.+.+.| |+.+
T Consensus 127 v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~---~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 127 MFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV---LELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp EEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC---HHHHHHHHHHHHTSTTEEEE
T ss_pred EEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC---HHHHHHHHHHHHHCCCcccc
Confidence 98765432211000 0136999999999999999887422 233344555666666 4443
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-11 Score=112.05 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=79.1
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHH----HhcC--CccEEEeccCcC-C--CCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFI----ASRG--VVPLYISISQRL-P--FFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~a----a~rg--~i~~~~~d~~~L-p--f~d~sFDlV~s~~~ 307 (392)
+|||||||+|.++..+++.+ ..++| +|++....+.+ .+.+ .+.++.+|+..+ + +++++||.|++.+.
T Consensus 37 ~vLDiGcG~G~~~~~lA~~~p~~~v~g--iD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~ 114 (218)
T 3dxy_A 37 VTLEIGFGMGASLVAMAKDRPEQDFLG--IEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP 114 (218)
T ss_dssp EEEEESCTTCHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred eEEEEeeeChHHHHHHHHHCCCCeEEE--EEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence 35999999999999999864 46777 55644554432 2333 378888887774 3 67899999998865
Q ss_pred ccccCCchhH------HHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHc-CCeEE
Q 047630 308 LSNWIPTTLL------HFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESV-GFNKL 362 (392)
Q Consensus 308 l~~~~~~~~l------~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~a-Gf~~i 362 (392)
.. |...... ..+++++.|+|||||+|++..- .....+...+.+... +|+.+
T Consensus 115 ~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td---~~~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3dxy_A 115 DP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD---WEPYAEHMLEVMSSIDGYKNL 172 (218)
T ss_dssp CC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES---CHHHHHHHHHHHHTSTTEEEC
T ss_pred CC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHhCCCcccc
Confidence 42 2222211 2489999999999999988752 223334445555543 45544
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-10 Score=103.34 Aligned_cols=130 Identities=22% Similarity=0.335 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~ 290 (392)
...++..++...++.+| ||||||+|..+..+++. +..++++|++ ..+.+.+.+ .+ .+.++++|+.
T Consensus 46 ~~~~l~~l~~~~~~~~v---LdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 120 (221)
T 3u81_A 46 KGQIMDAVIREYSPSLV---LELGAYCGYSAVRMARLLQPGARLLTMEIN--PDCAAITQQMLNFAGLQDKVTILNGASQ 120 (221)
T ss_dssp HHHHHHHHHHHHCCSEE---EEECCTTSHHHHHHHTTSCTTCEEEEEESC--HHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHhcCCCEE---EEECCCCCHHHHHHHHhCCCCCEEEEEeCC--hHHHHHHHHHHHHcCCCCceEEEECCHH
Confidence 44455666655555555 99999999999999983 6788885543 444443322 23 2788888864
Q ss_pred c-CCCCC-----CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHH-cCCeEE
Q 047630 291 R-LPFFD-----NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIES-VGFNKL 362 (392)
Q Consensus 291 ~-Lpf~d-----~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~-aGf~~i 362 (392)
. ++... ++||+|++....+++ .....++.++ ++|||||+|++++...... .+ +.+.+.+ -+|+..
T Consensus 121 ~~l~~~~~~~~~~~fD~V~~d~~~~~~---~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~--~~-~~~~l~~~~~~~~~ 192 (221)
T 3u81_A 121 DLIPQLKKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKC-GLLRKGTVLLADNVIVPGT--PD-FLAYVRGSSSFECT 192 (221)
T ss_dssp HHGGGTTTTSCCCCCSEEEECSCGGGH---HHHHHHHHHT-TCCCTTCEEEESCCCCCCC--HH-HHHHHHHCTTEEEE
T ss_pred HHHHHHHHhcCCCceEEEEEcCCcccc---hHHHHHHHhc-cccCCCeEEEEeCCCCcch--HH-HHHHHhhCCCceEE
Confidence 4 33322 789999998777665 3333567777 9999999999998764332 23 4445544 344443
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-11 Score=120.99 Aligned_cols=103 Identities=9% Similarity=0.064 Sum_probs=75.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cCC-EEEEEecCCCchhHHHHH-----------hc----CCccEEEeccCcCC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RNI-TIVTTSMNLNGPFNNFIA-----------SR----GVVPLYISISQRLP 293 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa-----------~r----g~i~~~~~d~~~Lp 293 (392)
+.++..+ ||||||+|.++..++. .+. .++|+|++ ....+.+. .. +.+.++++|+..+|
T Consensus 171 l~~gd~V---LDLGCGtG~l~l~lA~~~g~~kVvGIDiS--~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp 245 (438)
T 3uwp_A 171 MTDDDLF---VDLGSGVGQVVLQVAAATNCKHHYGVEKA--DIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE 245 (438)
T ss_dssp CCTTCEE---EEESCTTSHHHHHHHHHCCCSEEEEEECC--HHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHH
T ss_pred CCCCCEE---EEeCCCCCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCc
Confidence 4555556 9999999999999886 455 48885544 33332111 11 34789999999988
Q ss_pred CCC--CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 294 FFD--NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 294 f~d--~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
+.+ ..||+|+++..++ + .++...|.+++|+|||||+|++.+.+..
T Consensus 246 ~~d~~~~aDVVf~Nn~~F-~---pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 246 WRERIANTSVIFVNNFAF-G---PEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp HHHHHHTCSEEEECCTTC-C---HHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred cccccCCccEEEEccccc-C---chHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 754 4799999987653 2 5666789999999999999999986654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=103.36 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=77.1
Q ss_pred EEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHH----hcCC--ccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 240 GLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIA----SRGV--VPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa----~rg~--i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
|||+|||+|.++..+++. +..++++| ++....+.+. ..+. +.+..+|...++ ++++||+|++...
T Consensus 69 vLDiG~G~G~~~~~l~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~---- 141 (207)
T 1jsx_A 69 FIDVGTGPGLPGIPLSIVRPEAHFTLLD--SLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF---- 141 (207)
T ss_dssp EEEETCTTTTTHHHHHHHCTTSEEEEEE--SCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS----
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc----
Confidence 499999999999999985 67888855 4334443322 2232 678888888776 4678999997542
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
.....++.++.++|||||++++...... .+++.++++ ||+.++..
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~~----~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALKGQMP----EDEIALLPE--EYQVESVV 186 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEESSCC----HHHHHTSCT--TEEEEEEE
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEeCCCc----hHHHHHHhc--CCceeeee
Confidence 2235799999999999999998854332 223444444 88877644
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=9.4e-11 Score=112.27 Aligned_cols=97 Identities=11% Similarity=0.170 Sum_probs=72.3
Q ss_pred EEEEEcCCcch----HHHHHHHc------CCEEEEEecCCCchhHHHHHhc-----------------------------
Q 047630 239 IGLDIGGGVAT----FAVRMMER------NITIVTTSMNLNGPFNNFIASR----------------------------- 279 (392)
Q Consensus 239 ~VLDIGCGtG~----~a~~La~~------g~~vvg~~iD~~a~~~~~aa~r----------------------------- 279 (392)
.|||+|||||. ++..|++. +..|+|+|+| ..+.+.|.+.
T Consensus 108 rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis--~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 108 RVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDID--TEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp EEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESC--HHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred EEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECC--HHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 45999999998 66666664 3578886654 3444433321
Q ss_pred --------CCccEEEeccCcCCCC-CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 280 --------GVVPLYISISQRLPFF-DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 280 --------g~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+.|.++|....|++ .+.||+|+|.++++++ +++..++++.+++++|||||+|++.+
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1256778887776665 5789999999999886 55666899999999999999998864
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=105.01 Aligned_cols=97 Identities=11% Similarity=-0.007 Sum_probs=73.6
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCcccEE
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+.+.++.+| ||+|||+|.++..+++.+..++++|++ ....+.+.+ .+ .+.+..+|....+..+++||+|
T Consensus 73 l~~~~~~~v---LdiG~G~G~~~~~la~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 147 (210)
T 3lbf_A 73 LELTPQSRV---LEIGTGSGYQTAILAHLVQHVCSVERI--KGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAI 147 (210)
T ss_dssp TTCCTTCEE---EEECCTTSHHHHHHHHHSSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEE
T ss_pred cCCCCCCEE---EEEcCCCCHHHHHHHHhCCEEEEEecC--HHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEE
Confidence 334455555 999999999999999998899995544 444443332 23 3678889988776677899999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
++..+++++. .++.++|||||++++...
T Consensus 148 ~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 148 IVTAAPPEIP---------TALMTQLDEGGILVLPVG 175 (210)
T ss_dssp EESSBCSSCC---------THHHHTEEEEEEEEEEEC
T ss_pred EEccchhhhh---------HHHHHhcccCcEEEEEEc
Confidence 9999998752 368899999999988753
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=112.56 Aligned_cols=99 Identities=9% Similarity=0.090 Sum_probs=72.6
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHH-HHH-cCCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCcc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVR-MME-RNITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~-La~-~g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sF 299 (392)
++++.++.+| ||||||+|.++.. +++ .+..|+++|+| ..+.+.+.+ .| .+.++++|+..++ +++|
T Consensus 117 la~l~~g~rV---LDIGcG~G~~ta~~lA~~~ga~V~gIDis--~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~F 189 (298)
T 3fpf_A 117 LGRFRRGERA---VFIGGGPLPLTGILLSHVYGMRVNVVEIE--PDIAELSRKVIEGLGVDGVNVITGDETVID--GLEF 189 (298)
T ss_dssp HTTCCTTCEE---EEECCCSSCHHHHHHHHTTCCEEEEEESS--HHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCC
T ss_pred HcCCCCcCEE---EEECCCccHHHHHHHHHccCCEEEEEECC--HHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCc
Confidence 4456666666 9999999987644 455 58889985544 455543332 24 3788999988876 7899
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|+|++.... .+.+++++++.|+|||||+|++...
T Consensus 190 DvV~~~a~~------~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 190 DVLMVAALA------EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp SEEEECTTC------SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CEEEECCCc------cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 999986542 3445799999999999999998874
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=9.5e-11 Score=106.27 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=71.7
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHh----cC----CccEEEeccCcCCC--CCCc-cc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIAS----RG----VVPLYISISQRLPF--FDNT-LD 300 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~----rg----~i~~~~~d~~~Lpf--~d~s-FD 300 (392)
++.+| ||+|||+|.++..++.++. .|++ +|++..+.+.+.+ .+ .+.++.+|+..+.. .+++ ||
T Consensus 53 ~~~~v---LDlGcGtG~~~~~~~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 127 (201)
T 2ift_A 53 HQSEC---LDGFAGSGSLGFEALSRQAKKVTF--LELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFD 127 (201)
T ss_dssp TTCEE---EETTCTTCHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred CCCeE---EEcCCccCHHHHHHHHccCCEEEE--EECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCC
Confidence 44555 9999999999998887764 7888 5554444443322 23 36788888766532 3678 99
Q ss_pred EEEEcccccccCCchhHHHHHHHH--HHcccCCcEEEEEeecc
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDI--YRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el--~RvLKPGG~lii~~~~~ 341 (392)
+|++...++ . ...+.+++++ .|+|||||.+++.....
T Consensus 128 ~I~~~~~~~-~---~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 128 VVFLDPPFH-F---NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EEEECCCSS-S---CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EEEECCCCC-C---ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 999987754 2 4456788888 77899999999887544
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=107.09 Aligned_cols=129 Identities=11% Similarity=0.091 Sum_probs=86.3
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc------CCEEEEEecCCCchhHHHHHh-cCCccEEEeccCcC--
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER------NITIVTTSMNLNGPFNNFIAS-RGVVPLYISISQRL-- 292 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~------g~~vvg~~iD~~a~~~~~aa~-rg~i~~~~~d~~~L-- 292 (392)
...+..++...++.+| ||||||+|..+..|++. +.+|+++|++. .+.+.+.. ...+.++++|...+
T Consensus 70 ~~~l~~~l~~~~~~~V---LDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~--~~l~~a~~~~~~v~~~~gD~~~~~~ 144 (236)
T 2bm8_A 70 QAVYHDMLWELRPRTI---VELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL--SRCQIPASDMENITLHQGDCSDLTT 144 (236)
T ss_dssp HHHHHHHHHHHCCSEE---EEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC--TTCCCCGGGCTTEEEEECCSSCSGG
T ss_pred HHHHHHHHHhcCCCEE---EEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCCh--HHHHHHhccCCceEEEECcchhHHH
Confidence 4455555555444455 99999999999999886 67888866554 33222212 23478999998874
Q ss_pred -CCCC-CcccEEEEcccccccCCchhHHHHHHHHHH-cccCCcEEEEEeecccc-cchHHHHHHHHHHc--CCeE
Q 047630 293 -PFFD-NTLDIVHSMHVLSNWIPTTLLHFLMFDIYR-VLRPGGLFWLDHFFCVG-AQLEDVYVPLIESV--GFNK 361 (392)
Q Consensus 293 -pf~d-~sFDlV~s~~~l~~~~~~~~l~~~L~el~R-vLKPGG~lii~~~~~~~-~~l~~~l~~ll~~a--Gf~~ 361 (392)
++.+ .+||+|++... | .....++.++.| +|||||+|++.++.... ....+.+.+++++. +|+.
T Consensus 145 l~~~~~~~fD~I~~d~~--~----~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 145 FEHLREMAHPLIFIDNA--H----ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp GGGGSSSCSSEEEEESS--C----SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred HHhhccCCCCEEEECCc--h----HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 5544 47999998654 2 234579999998 99999999998652111 11123577788877 4554
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=107.02 Aligned_cols=114 Identities=9% Similarity=-0.050 Sum_probs=76.3
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc----CCEEEEEecCCCchhHHHHHh----c---CC----------
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER----NITIVTTSMNLNGPFNNFIAS----R---GV---------- 281 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~----g~~vvg~~iD~~a~~~~~aa~----r---g~---------- 281 (392)
.+++.++.......-..|||+|||+|.++..+++. +..++|+|+| ....+.+.+ . +.
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis--~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVD--PAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESC--HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECC--HHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 56666665432222234599999999999999886 4577775544 344332221 1 11
Q ss_pred ------------------cc-------------EEEeccCcCCC-----CCCcccEEEEcccccccCC------chhHHH
Q 047630 282 ------------------VP-------------LYISISQRLPF-----FDNTLDIVHSMHVLSNWIP------TTLLHF 319 (392)
Q Consensus 282 ------------------i~-------------~~~~d~~~Lpf-----~d~sFDlV~s~~~l~~~~~------~~~l~~ 319 (392)
+. +.++|...... ..++||+|+++..++.... .+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 45 88888766321 3458999999877655432 245668
Q ss_pred HHHHHHHcccCCcEEEEEe
Q 047630 320 LMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 320 ~L~el~RvLKPGG~lii~~ 338 (392)
+++++.++|||||++++..
T Consensus 196 ~l~~~~~~LkpgG~l~~~~ 214 (250)
T 1o9g_A 196 LLRSLASALPAHAVIAVTD 214 (250)
T ss_dssp HHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEeC
Confidence 9999999999999999843
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.5e-10 Score=99.48 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=83.3
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHc-C----------CEEEEEecCCCchhHHHHHhcCCccEE-EeccCcCC------
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMER-N----------ITIVTTSMNLNGPFNNFIASRGVVPLY-ISISQRLP------ 293 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~-g----------~~vvg~~iD~~a~~~~~aa~rg~i~~~-~~d~~~Lp------ 293 (392)
.++.+| ||+|||+|.++..+++. + ..++++|++. .. ....+.++ .+|....+
T Consensus 21 ~~~~~v---LDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~--~~-----~~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 21 RPGLRV---LDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLH--IF-----PLEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp CTTCEE---EEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSC--CC-----CCTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCCEE---EEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechh--cc-----cCCCCeEEEeccCCCHHHHHHHH
Confidence 344455 99999999999999986 3 6788855543 11 01225677 77765543
Q ss_pred --CCCCcccEEEEccccccc----CCch----hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 294 --FFDNTLDIVHSMHVLSNW----IPTT----LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 294 --f~d~sFDlV~s~~~l~~~----~~~~----~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
+++++||+|++..+++.. .+.. ..+.+++++.|+|||||.|++..+... .. ..+...+... |..+.
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~-~~~~~~l~~~-f~~v~ 166 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS--QS-RRLQRRLTEE-FQNVR 166 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG--GG-HHHHHHHHHH-EEEEE
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc--cH-HHHHHHHHHH-hcceE
Confidence 345689999997655421 1111 114789999999999999999876442 22 2345555553 66666
Q ss_pred EEEeeccCCCCcccceeeEEEEEc
Q 047630 364 WVVGRKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 364 w~~~~k~d~~~~~~e~ylsai~~K 387 (392)
+..... . .....|.|+.+...|
T Consensus 167 ~~~~~~-~-~~~~~e~~~v~~g~~ 188 (196)
T 2nyu_A 167 IIKPEA-S-RKESSEVYFLATQYH 188 (196)
T ss_dssp EECCC----------EEEEEEEEC
T ss_pred EECCcc-c-CccCceEEEEeeecC
Confidence 542211 1 123456666554444
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=100.14 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=77.7
Q ss_pred EEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHHH----HHhcCCccEEEeccCcCC---CCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNNF----IASRGVVPLYISISQRLP---FFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~~----aa~rg~i~~~~~d~~~Lp---f~d~sFDlV~s~~~l 308 (392)
.|||+|||+|.++..+++. + ..++++| ++..+.+. +.+...+.++.+|+.... ..+++||+|++...
T Consensus 76 ~vLDlG~G~G~~~~~la~~~~~~~~v~~vD--~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~- 152 (227)
T 1g8a_A 76 SVLYLGIASGTTASHVSDIVGWEGKIFGIE--FSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA- 152 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTSEEEEEE--SCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC-
T ss_pred EEEEEeccCCHHHHHHHHHhCCCeEEEEEE--CCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC-
Confidence 3499999999999999975 3 6788854 53433322 222234788888877632 22468999997654
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------ch-HHHHHHHHHHcCCeEEEEEEe
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------QL-EDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------~l-~~~l~~ll~~aGf~~i~w~~~ 367 (392)
.+.....++.++.++|||||++++. +..... .. .+++..+ +++ |+.++....
T Consensus 153 ----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~ 212 (227)
T 1g8a_A 153 ----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNL 212 (227)
T ss_dssp ----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEEC
T ss_pred ----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEecc
Confidence 1233335699999999999999887 322111 11 3445555 666 998876543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.5e-10 Score=105.96 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~ 290 (392)
...++..+..+.++.+| ||||||+|..+..+++. +..++++| ++....+.+. +.+ .+.++++|+.
T Consensus 51 ~~~~l~~l~~~~~~~~V---LdiG~G~G~~~~~la~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 125 (248)
T 3tfw_A 51 QGQFLALLVRLTQAKRI---LEIGTLGGYSTIWMARELPADGQLLTLE--ADAHHAQVARENLQLAGVDQRVTLREGPAL 125 (248)
T ss_dssp HHHHHHHHHHHHTCSEE---EEECCTTSHHHHHHHTTSCTTCEEEEEE--CCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred HHHHHHHHHhhcCCCEE---EEecCCchHHHHHHHHhCCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 34455555555555555 99999999999999986 67888855 4344444332 223 3678888876
Q ss_pred c-CCCC--CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 291 R-LPFF--DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 291 ~-Lpf~--d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
. ++.. .++||+|++.... .....+++++.++|||||+|++++...
T Consensus 126 ~~l~~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 126 QSLESLGECPAFDLIFIDADK------PNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp HHHHTCCSCCCCSEEEECSCG------GGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred HHHHhcCCCCCeEEEEECCch------HHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 5 3433 3489999986532 344578999999999999999998654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.6e-10 Score=104.15 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=79.9
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh-------cC---CccEEEeccCcC-------CCCCCcc
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS-------RG---VVPLYISISQRL-------PFFDNTL 299 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~-------rg---~i~~~~~d~~~L-------pf~d~sF 299 (392)
.|||+|||+|.++..++++. ..++++| ++....+.+.+ .+ .+.++.+|+..+ ++++++|
T Consensus 39 ~VLDlG~G~G~~~l~la~~~~~~~v~gvD--i~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f 116 (260)
T 2ozv_A 39 RIADLGAGAGAAGMAVAARLEKAEVTLYE--RSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF 116 (260)
T ss_dssp EEEECCSSSSHHHHHHHHHCTTEEEEEEE--SSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred EEEEeCChHhHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence 45999999999999999974 5777755 53444443322 22 267888998876 3567899
Q ss_pred cEEEEccccccc---------------CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 300 DIVHSMHVLSNW---------------IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 300 DlV~s~~~l~~~---------------~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
|+|+++..+... .....++.+++++.++|||||+|++..... .. .++.+.+++. |..++.
T Consensus 117 D~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~-~~~~~~l~~~-~~~~~i 191 (260)
T 2ozv_A 117 HHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ---SV-AEIIAACGSR-FGGLEI 191 (260)
T ss_dssp EEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG---GH-HHHHHHHTTT-EEEEEE
T ss_pred CEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH---HH-HHHHHHHHhc-CCceEE
Confidence 999998544321 112336789999999999999998864322 33 3355566653 665554
Q ss_pred EE
Q 047630 365 VV 366 (392)
Q Consensus 365 ~~ 366 (392)
..
T Consensus 192 ~~ 193 (260)
T 2ozv_A 192 TL 193 (260)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=106.97 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=83.9
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~s 298 (392)
+.+.++.+| ||+|||+|.++..+++. +..+++ +|++....+.+.++ + .+.+..+|+... +++++
T Consensus 89 ~~~~~~~~v---ldiG~G~G~~~~~l~~~~~~~~~v~~--~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~ 162 (255)
T 3mb5_A 89 AGISPGDFI---VEAGVGSGALTLFLANIVGPEGRVVS--YEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEEN 162 (255)
T ss_dssp TTCCTTCEE---EEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCS
T ss_pred hCCCCCCEE---EEecCCchHHHHHHHHHhCCCeEEEE--EecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCC
Confidence 344455555 99999999999999997 678888 55544444433322 3 267888887754 67889
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC--CeEEEE
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG--FNKLKW 364 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG--f~~i~w 364 (392)
||+|++.. .++ ..+++++.++|||||++++..... +....+.+.+++.| |..++.
T Consensus 163 ~D~v~~~~-----~~~---~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 163 VDHVILDL-----PQP---ERVVEHAAKALKPGGFFVAYTPCS---NQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp EEEEEECS-----SCG---GGGHHHHHHHEEEEEEEEEEESSH---HHHHHHHHHHHHTGGGBSCCEE
T ss_pred cCEEEECC-----CCH---HHHHHHHHHHcCCCCEEEEEECCH---HHHHHHHHHHHHcCCCccccEE
Confidence 99999842 122 248999999999999998875332 22344777889999 876654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=102.37 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=69.1
Q ss_pred EEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHH----hcC---CccEEEeccCc-CCCCCCcccEEEEccccc
Q 047630 239 IGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQR-LPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~-Lpf~d~sFDlV~s~~~l~ 309 (392)
.|||+|||+|.++..+++.+ ..+++ +|++..+.+.+. ..+ .+.++.+|+.. ++..++.||+|++...++
T Consensus 34 ~vLDlGcG~G~~~~~l~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~ 111 (177)
T 2esr_A 34 RVLDLFAGSGGLAIEAVSRGMSAAVL--VEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA 111 (177)
T ss_dssp EEEEETCTTCHHHHHHHHTTCCEEEE--ECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred eEEEeCCCCCHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCCC
Confidence 34999999999999999885 47888 555444444332 222 26788888766 454557799999987653
Q ss_pred ccCCchhHHHHHHHHH--HcccCCcEEEEEeecc
Q 047630 310 NWIPTTLLHFLMFDIY--RVLRPGGLFWLDHFFC 341 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~--RvLKPGG~lii~~~~~ 341 (392)
. ...+.+++.+. ++|||||++++.....
T Consensus 112 ~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 112 K----ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp H----HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred c----chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 2 33456777776 9999999999987544
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=114.87 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=72.3
Q ss_pred cEEEEEcCC------cchHHHHHHHc---CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC------CCcccEE
Q 047630 238 RIGLDIGGG------VATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF------DNTLDIV 302 (392)
Q Consensus 238 r~VLDIGCG------tG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~------d~sFDlV 302 (392)
.+||||||| +|..+..+++. +..++|+|++. .+ ......+.++++|..++++. +++||+|
T Consensus 218 ~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp--~m---~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 218 VRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMD--KS---HVDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp CEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSC--CG---GGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCH--HH---hhcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 345999999 77777777653 67899966655 22 12233589999999999887 7899999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
++..+ |++ .+...+|++++|+|||||+|++.++.
T Consensus 293 isdgs-H~~---~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 293 IDDGS-HIN---AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EECSC-CCH---HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EECCc-ccc---hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 98754 554 55678999999999999999998754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=106.49 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~ 291 (392)
...++..++...++.+| ||||||+|..+..+++ .+..++++| ++....+.+. +.+ .+.++.+|+..
T Consensus 59 ~~~~l~~~~~~~~~~~v---LDiG~G~G~~~~~la~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (232)
T 3ntv_A 59 TLDLIKQLIRMNNVKNI---LEIGTAIGYSSMQFASISDDIHVTTIE--RNETMIQYAKQNLATYHFENQVRIIEGNALE 133 (232)
T ss_dssp HHHHHHHHHHHHTCCEE---EEECCSSSHHHHHHHTTCTTCEEEEEE--CCHHHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHHHhhcCCCEE---EEEeCchhHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence 33445555555555555 9999999999999999 567888855 4344444322 223 47889998766
Q ss_pred C-C-CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 292 L-P-FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 292 L-p-f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
. + ..+++||+|++.... .....+++++.++|||||+|++++...
T Consensus 134 ~~~~~~~~~fD~V~~~~~~------~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 134 QFENVNDKVYDMIFIDAAK------AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp CHHHHTTSCEEEEEEETTS------SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred HHHhhccCCccEEEEcCcH------HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 4 4 447899999976433 334579999999999999999987543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-10 Score=109.60 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=84.9
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----------CCccEEEeccCcCCC--CCCcccEEE
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQRLPF--FDNTLDIVH 303 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~Lpf--~d~sFDlV~ 303 (392)
..|||||||+|.++..+++. ...++++|+| ....+.+.++ ..+.++.+|...++. .+++||+|+
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid--~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRHGTVEHCDLVDID--GEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CeEEEEcCCCCHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 44599999999999999986 3578885544 3443332221 236788898777654 478999999
Q ss_pred EcccccccCCchhH--HHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 304 SMHVLSNWIPTTLL--HFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 304 s~~~l~~~~~~~~l--~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+....+. .+...+ ..+++++.|+|||||+|++..... ......+.+.+.++++||..+.....
T Consensus 175 ~d~~~~~-~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 175 IDTTDPA-GPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALM 240 (304)
T ss_dssp EECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred ECCCCcc-ccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEe
Confidence 9765533 222222 478999999999999998874321 11223456888899999988765533
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-10 Score=106.06 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=71.9
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.+.++.+| ||+|||+|.++..+++.+..++++| ++....+.+.++ +.+.++.+|.......+++||+|++.
T Consensus 67 ~~~~~~~v---LdiG~G~G~~~~~l~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 141 (231)
T 1vbf_A 67 DLHKGQKV---LEIGTGIGYYTALIAEIVDKVVSVE--INEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVW 141 (231)
T ss_dssp TCCTTCEE---EEECCTTSHHHHHHHHHSSEEEEEE--SCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CCCCCCEE---EEEcCCCCHHHHHHHHHcCEEEEEe--CCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEEC
Confidence 34444555 9999999999999999888888855 434444444333 24678888877633356789999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.+++++. .++.++|||||++++...
T Consensus 142 ~~~~~~~---------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 142 ATAPTLL---------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp SBBSSCC---------HHHHHTEEEEEEEEEEEC
T ss_pred CcHHHHH---------HHHHHHcCCCcEEEEEEc
Confidence 9998752 478899999999988864
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.7e-10 Score=105.39 Aligned_cols=145 Identities=11% Similarity=0.074 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhCCCC--cccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHH----HhcC---CccEEEecc
Q 047630 221 LDFSIDEVLATKKPG--TIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFI----ASRG---VVPLYISIS 289 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~--~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~a----a~rg---~i~~~~~d~ 289 (392)
...++..++...+.. .-..|||+|||+|.++..++++ +..++++|++ ..+.+.+ ...+ .+.++++|+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~~~~~d~ 125 (254)
T 2h00_A 48 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVD--DMCFNYAKKNVEQNNLSDLIKVVKVPQ 125 (254)
T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHHHHcCCCccEEEEEcch
Confidence 445666666543211 1234599999999999988875 6788885544 3444322 2233 268888887
Q ss_pred CcC---CCC---CCcccEEEEcccccccCC------------chhHHHHHHHHHHcccCCcEEEEEeec-----------
Q 047630 290 QRL---PFF---DNTLDIVHSMHVLSNWIP------------TTLLHFLMFDIYRVLRPGGLFWLDHFF----------- 340 (392)
Q Consensus 290 ~~L---pf~---d~sFDlV~s~~~l~~~~~------------~~~l~~~L~el~RvLKPGG~lii~~~~----------- 340 (392)
... +++ +++||+|+++..+++... ......++.+++|+|||||.+.+.+..
T Consensus 126 ~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~ 205 (254)
T 2h00_A 126 KTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRL 205 (254)
T ss_dssp TCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGB
T ss_pred hhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccce
Confidence 652 444 368999999866654320 011124567777888887766332110
Q ss_pred ------ccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 341 ------CVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 341 ------~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
.......+.+.++++++||+.++....
T Consensus 206 g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 206 RWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp SCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred EEEEECCCChhHHHHHHHHHHHcCCCceEEEEE
Confidence 000111256888999999998877644
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.8e-10 Score=106.01 Aligned_cols=136 Identities=13% Similarity=0.083 Sum_probs=84.8
Q ss_pred HHHHHHHHHhh---CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEec-CCCchhHHHHHh---------cC------
Q 047630 221 LDFSIDEVLAT---KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSM-NLNGPFNNFIAS---------RG------ 280 (392)
Q Consensus 221 ~~~lI~~ll~l---~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~i-D~~a~~~~~aa~---------rg------ 280 (392)
...+++.+... .++.+| ||+|||+|.++..+++.+. .|+++|+ + ....+.+.+ .+
T Consensus 64 ~~~l~~~l~~~~~~~~~~~v---LDlG~G~G~~~~~~a~~~~~~v~~~D~s~--~~~~~~a~~n~~~N~~~~~~~~~~~~ 138 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTV---CELGAGAGLVSIVAFLAGADQVVATDYPD--PEILNSLESNIREHTANSCSSETVKR 138 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEE---EETTCTTSHHHHHHHHTTCSEEEEEECSC--HHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHhcchhcCCCeE---EEecccccHHHHHHHHcCCCEEEEEeCCC--HHHHHHHHHHHHHhhhhhcccccCCC
Confidence 44455555432 334444 9999999999999999887 8999665 3 333332211 11
Q ss_pred -CccEEEeccCc----CCC--CCCcccEEEEcccccccCCchhHHHHHHHHHHccc---C--CcEEEEEeec-ccc-cch
Q 047630 281 -VVPLYISISQR----LPF--FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLR---P--GGLFWLDHFF-CVG-AQL 346 (392)
Q Consensus 281 -~i~~~~~d~~~----Lpf--~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLK---P--GG~lii~~~~-~~~-~~l 346 (392)
.+.+...+..+ +.. .+++||+|++..++++. .....+++++.++|| | ||.+++.-.. ... ...
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~---~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~ 215 (281)
T 3bzb_A 139 ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH---QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAER 215 (281)
T ss_dssp CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCG---GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------
T ss_pred CCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccCh---HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchh
Confidence 24444333222 110 36789999999998775 556789999999999 9 9987664211 110 011
Q ss_pred HHHHHHHHHHcC-CeEEEE
Q 047630 347 EDVYVPLIESVG-FNKLKW 364 (392)
Q Consensus 347 ~~~l~~ll~~aG-f~~i~w 364 (392)
...+.+.+++.| |+....
T Consensus 216 ~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 216 DLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp CTHHHHHHHHSTTEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEe
Confidence 233566888999 987755
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=100.11 Aligned_cols=111 Identities=11% Similarity=0.030 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHH----HhcC---CccEEEeccC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFI----ASRG---VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~a----a~rg---~i~~~~~d~~ 290 (392)
...++..+....++.+| ||||||+|..+..+++. +..++++|++ ....+.+ .+.+ .+.++++|+.
T Consensus 46 ~~~~l~~l~~~~~~~~v---LdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 120 (223)
T 3duw_A 46 QGKFLQLLVQIQGARNI---LEIGTLGGYSTIWLARGLSSGGRVVTLEAS--EKHADIARSNIERANLNDRVEVRTGLAL 120 (223)
T ss_dssp HHHHHHHHHHHHTCSEE---EEECCTTSHHHHHHHTTCCSSCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred HHHHHHHHHHhhCCCEE---EEecCCccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 34455566555555566 99999999999999996 6788885544 3444322 2223 3678888865
Q ss_pred cC-C-CC---CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 291 RL-P-FF---DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 291 ~L-p-f~---d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
.. + +. .++||+|++.... .....++.++.++|||||++++++....
T Consensus 121 ~~~~~~~~~~~~~fD~v~~d~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 121 DSLQQIENEKYEPFDFIFIDADK------QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp HHHHHHHHTTCCCCSEEEECSCG------GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred HHHHHHHhcCCCCcCEEEEcCCc------HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 43 1 11 2679999987553 3345799999999999999999876543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-09 Score=105.88 Aligned_cols=124 Identities=9% Similarity=-0.000 Sum_probs=82.7
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHH----HhcC----CccEEEeccCcCCC----CCCcccEEEEccc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFI----ASRG----VVPLYISISQRLPF----FDNTLDIVHSMHV 307 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~a----a~rg----~i~~~~~d~~~Lpf----~d~sFDlV~s~~~ 307 (392)
|||+|||+|.++..+++.+..|++ +|++....+.+ ...+ .+.++++|+..+.. .+++||+|++...
T Consensus 157 VLDlgcGtG~~sl~la~~ga~V~~--VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP 234 (332)
T 2igt_A 157 VLNLFGYTGVASLVAAAAGAEVTH--VDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPP 234 (332)
T ss_dssp EEEETCTTCHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCC
T ss_pred EEEcccccCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCc
Confidence 499999999999999999888888 55544444322 2223 26788888766432 1578999999643
Q ss_pred ccccC-------CchhHHHHHHHHHHcccCCcEEEEEeecccc---cchHHHHHHHHHHcCCeEEEEE
Q 047630 308 LSNWI-------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---AQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 308 l~~~~-------~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
..... .......++.++.++|||||+|++....... +.+.+.+.+.+.++|++.....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~~~e 302 (332)
T 2igt_A 235 KFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVASGE 302 (332)
T ss_dssp SEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEEEEE
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 21111 1234567999999999999998877654433 2234444555557888766444
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-10 Score=111.34 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=73.7
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHH----HhcC---CccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFI----ASRG---VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~a----a~rg---~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
..++.+| ||||||+|.++..+++.+. .|+++|++ ++...+ .+.+ .+.++.++.+.++++ ++||+|
T Consensus 48 ~~~~~~V---LDiGcGtG~ls~~la~~g~~~V~~vD~s---~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~I 120 (348)
T 2y1w_A 48 DFKDKIV---LDVGCGSGILSFFAAQAGARKIYAVEAS---TMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDII 120 (348)
T ss_dssp GTTTCEE---EEETCTTSHHHHHHHHTTCSEEEEEECS---THHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEE
T ss_pred cCCcCEE---EEcCCCccHHHHHHHhCCCCEEEEECCH---HHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEE
Confidence 3444444 9999999999999999865 89886654 233322 2223 378899999988765 579999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
++...++++.. +.....+.++.|+|||||++++.
T Consensus 121 vs~~~~~~~~~-~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 121 ISEPMGYMLFN-ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EECCCBTTBTT-TSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEeCchhcCCh-HHHHHHHHHHHhhcCCCeEEEEe
Confidence 99988877644 33456788999999999999755
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.1e-09 Score=98.34 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=92.7
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH----HHHhcC---CccEEEeccCcCCC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRLPF 294 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~Lpf 294 (392)
.+..+....+.+ .+|||||||+|.++..+++.+. .|+++|+|. ...+ .+...+ .+.+..+|......
T Consensus 11 RL~~i~~~v~~g--~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~--~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~ 86 (230)
T 3lec_A 11 RLQKVANYVPKG--ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVN--GPYQSALKNVSEHGLTSKIDVRLANGLSAFE 86 (230)
T ss_dssp HHHHHHTTSCTT--EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSH--HHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHHhCCCC--CEEEEECCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECchhhccc
Confidence 345555544333 2349999999999999999875 467755443 3333 333444 37888999777655
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+++.||+|+.....- +.+..++.+..+.|+++|+|++..... .+.+++++.+.||..++-..+.
T Consensus 87 ~~~~~D~IviaGmGg-----~lI~~IL~~~~~~l~~~~~lIlqp~~~-----~~~lr~~L~~~Gf~i~~E~lv~ 150 (230)
T 3lec_A 87 EADNIDTITICGMGG-----RLIADILNNDIDKLQHVKTLVLQPNNR-----EDDLRKWLAANDFEIVAEDILT 150 (230)
T ss_dssp GGGCCCEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEESSC-----HHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccccCEEEEeCCch-----HHHHHHHHHHHHHhCcCCEEEEECCCC-----hHHHHHHHHHCCCEEEEEEEEE
Confidence 555799988654321 345678999999999999999987432 4568889999999999877664
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=106.94 Aligned_cols=125 Identities=15% Similarity=0.095 Sum_probs=86.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcCCCCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~Lpf~d~sFDl 301 (392)
..++..+ ||+|||+|.++..++..+ ..++|+|+|. .+.+ .+...| .+.+.++|+..++.+.+.||+
T Consensus 201 ~~~~~~v---LD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~--~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~ 275 (354)
T 3tma_A 201 ARPGMRV---LDPFTGSGTIALEAASTLGPTSPVYAGDLDE--KRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDR 275 (354)
T ss_dssp CCTTCCE---EESSCTTSHHHHHHHHHHCTTSCEEEEESCH--HHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSE
T ss_pred CCCCCEE---EeCCCCcCHHHHHHHHhhCCCceEEEEECCH--HHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCE
Confidence 3444455 999999999999999854 7888866543 4433 233334 478999999999887888999
Q ss_pred EEEcccccccCC-ch----hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 302 VHSMHVLSNWIP-TT----LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 302 V~s~~~l~~~~~-~~----~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
|+++..+..... .. ....+++++.++|||||.+++.... .+.+.+..+ .||+..+-...
T Consensus 276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~------~~~~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR------PALLKRALP-PGFALRHARVV 339 (354)
T ss_dssp EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC------HHHHHHHCC-TTEEEEEEEEC
T ss_pred EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC------HHHHHHHhh-cCcEEEEEEEE
Confidence 999866533221 11 1257899999999999999887532 122444555 88887765544
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.04 E-value=8.6e-10 Score=104.11 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=81.3
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----c-C----CccEEEeccCcCCCCCC
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----R-G----VVPLYISISQRLPFFDN 297 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----r-g----~i~~~~~d~~~Lpf~d~ 297 (392)
.+.++.+| ||+|||+|.++..+++. +..+++ +|++....+.+.+ . + .+.+..+|+...+++++
T Consensus 96 ~~~~~~~v---LdiG~G~G~~~~~l~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~ 170 (280)
T 1i9g_A 96 DIFPGARV---LEAGAGSGALTLSLLRAVGPAGQVIS--YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG 170 (280)
T ss_dssp TCCTTCEE---EEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTT
T ss_pred CCCCCCEE---EEEcccccHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCC
Confidence 34455555 99999999999999985 568888 5554444443322 2 3 46788899888888888
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHH-cCCeEEE
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIES-VGFNKLK 363 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~-aGf~~i~ 363 (392)
+||+|++... ++. .++.++.++|||||++++..... +...+ +.+.+++ .||..++
T Consensus 171 ~~D~v~~~~~-----~~~---~~l~~~~~~L~pgG~l~~~~~~~--~~~~~-~~~~l~~~~~f~~~~ 226 (280)
T 1i9g_A 171 SVDRAVLDML-----APW---EVLDAVSRLLVAGGVLMVYVATV--TQLSR-IVEALRAKQCWTEPR 226 (280)
T ss_dssp CEEEEEEESS-----CGG---GGHHHHHHHEEEEEEEEEEESSH--HHHHH-HHHHHHHHSSBCCCE
T ss_pred ceeEEEECCc-----CHH---HHHHHHHHhCCCCCEEEEEeCCH--HHHHH-HHHHHHhcCCcCCcE
Confidence 9999998321 222 48999999999999998876432 23333 3444555 7776543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.8e-10 Score=102.35 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~ 290 (392)
...++..++...++.+| ||||||+|..+..+++. +..++++|++ ....+.+. +.+ .+.++++++.
T Consensus 52 ~~~~l~~l~~~~~~~~v---LdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (225)
T 3tr6_A 52 QAQLLALLVKLMQAKKV---IDIGTFTGYSAIAMGLALPKDGTLITCDVD--EKSTALAKEYWEKAGLSDKIGLRLSPAK 126 (225)
T ss_dssp HHHHHHHHHHHHTCSEE---EEECCTTSHHHHHHHTTCCTTCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred HHHHHHHHHHhhCCCEE---EEeCCcchHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeCCHH
Confidence 34455666655555555 99999999999999986 6788885543 34443322 223 3678888864
Q ss_pred cC-CC-CC----CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 291 RL-PF-FD----NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 291 ~L-pf-~d----~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.. +. .. ++||+|++... ......+++++.++|||||+|++++...
T Consensus 127 ~~~~~~~~~~~~~~fD~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 127 DTLAELIHAGQAWQYDLIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp HHHHHHHTTTCTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred HHHHHhhhccCCCCccEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 43 22 11 78999996553 2344679999999999999999998653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-10 Score=101.96 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=71.0
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHH----hcC--CccEEEeccCc-CCCCCCcccEEEE
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQR-LPFFDNTLDIVHS 304 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~-Lpf~d~sFDlV~s 304 (392)
++.+| ||+|||+|.++..+++++. .|++ +|++..+.+.+. ..+ .+.++++|+.. ++..+++||+|++
T Consensus 54 ~~~~v---LDlgcG~G~~~~~l~~~~~~~V~~--vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~ 128 (202)
T 2fpo_A 54 VDAQC---LDCFAGSGALGLEALSRYAAGATL--IEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV 128 (202)
T ss_dssp TTCEE---EETTCTTCHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred CCCeE---EEeCCCcCHHHHHHHhcCCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence 34455 9999999999998888774 7888 555444444332 233 36788888766 5666789999999
Q ss_pred cccccccCCchhHHHHHHHHHH--cccCCcEEEEEeec
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYR--VLRPGGLFWLDHFF 340 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~R--vLKPGG~lii~~~~ 340 (392)
...++ . .....+++++.+ +|||||++++....
T Consensus 129 ~~p~~-~---~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 129 DPPFR-R---GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CCSSS-T---TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCCCC-C---CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 87754 2 334567888865 69999999988654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-10 Score=100.37 Aligned_cols=97 Identities=11% Similarity=0.003 Sum_probs=67.8
Q ss_pred EEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcC----CCCCCcccEEEEcc
Q 047630 239 IGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRL----PFFDNTLDIVHSMH 306 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~L----pf~d~sFDlV~s~~ 306 (392)
.|||+|||+|.++..+++.+ ..++++|+| ....+.+. ..+ .+.++.+|+... ++.+++||+|++..
T Consensus 47 ~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~ 124 (187)
T 2fhp_A 47 MALDLYSGSGGLAIEAVSRGMDKSICIEKN--FAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP 124 (187)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEeCCccCHHHHHHHHcCCCEEEEEECC--HHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECC
Confidence 34999999999999888876 588885544 34443222 223 267888887653 23368899999987
Q ss_pred cccccCCchhHHHHHHHH--HHcccCCcEEEEEeecc
Q 047630 307 VLSNWIPTTLLHFLMFDI--YRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el--~RvLKPGG~lii~~~~~ 341 (392)
.++. ...+.++..+ .++|||||++++.....
T Consensus 125 ~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 125 PYAK----QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp CGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 7542 2233566666 89999999999886543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-09 Score=102.75 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=82.6
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sF 299 (392)
.+.++.+| ||+|||+|.++..+++. +..+++ +|++....+.+.++ + .+.+..+|+... +++++|
T Consensus 109 ~~~~~~~V---LDiG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~ 182 (277)
T 1o54_A 109 DVKEGDRI---IDTGVGSGAMCAVLARAVGSSGKVFA--YEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDV 182 (277)
T ss_dssp TCCTTCEE---EEECCTTSHHHHHHHHHTTTTCEEEE--ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSE
T ss_pred CCCCCCEE---EEECCcCCHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCcc
Confidence 34444555 99999999999999986 467877 55544444433322 3 267788887765 667889
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
|+|++.. ... ..++.++.++|||||.+++..... +.. ..+.+.+++.||..++..
T Consensus 183 D~V~~~~-----~~~---~~~l~~~~~~L~pgG~l~~~~~~~--~~~-~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 183 DALFLDV-----PDP---WNYIDKCWEALKGGGRFATVCPTT--NQV-QETLKKLQELPFIRIEVW 237 (277)
T ss_dssp EEEEECC-----SCG---GGTHHHHHHHEEEEEEEEEEESSH--HHH-HHHHHHHHHSSEEEEEEE
T ss_pred CEEEECC-----cCH---HHHHHHHHHHcCCCCEEEEEeCCH--HHH-HHHHHHHHHCCCceeEEE
Confidence 9999842 112 258999999999999998876422 222 346667888999877543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-10 Score=103.63 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~ 291 (392)
...++..++...++.+| ||+|||+|.++..+++. +..+++ +|++....+.+.++ + .+.++.+|...
T Consensus 42 ~~~~l~~~~~~~~~~~v---LdiG~G~G~~~~~la~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 116 (233)
T 2gpy_A 42 GMESLLHLLKMAAPARI---LEIGTAIGYSAIRMAQALPEATIVS--IERDERRYEEAHKHVKALGLESRIELLFGDALQ 116 (233)
T ss_dssp HHHHHHHHHHHHCCSEE---EEECCTTSHHHHHHHHHCTTCEEEE--ECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGG
T ss_pred HHHHHHHHHhccCCCEE---EEecCCCcHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence 34455555555555555 99999999999999986 578888 55544444433332 3 36788888766
Q ss_pred C-CCC--CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 292 L-PFF--DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 292 L-pf~--d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
. +.. +++||+|++..... ....+++++.++|||||++++.++.
T Consensus 117 ~~~~~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 117 LGEKLELYPLFDVLFIDAAKG------QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp SHHHHTTSCCEEEEEEEGGGS------CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred HHHhcccCCCccEEEECCCHH------HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 4 433 57899999876653 3457999999999999999998654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5e-09 Score=106.04 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHH----HHHhcC-CccEEEeccCcCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNN----FIASRG-VVPLYISISQRLP 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~----~aa~rg-~i~~~~~d~~~Lp 293 (392)
...++..++...++.+| ||+|||+|..+..+++.. ..++++|++. .... .+.+.| .+.++++|...++
T Consensus 234 ~s~~~~~~l~~~~g~~V---LDlgaG~G~~t~~la~~~~~~~v~a~D~~~--~~l~~~~~~~~~~g~~~~~~~~D~~~~~ 308 (429)
T 1sqg_A 234 SAQGCMTWLAPQNGEHI---LDLCAAPGGKTTHILEVAPEAQVVAVDIDE--QRLSRVYDNLKRLGMKATVKQGDGRYPS 308 (429)
T ss_dssp HHHTHHHHHCCCTTCEE---EEESCTTCHHHHHHHHHCTTCEEEEEESST--TTHHHHHHHHHHTTCCCEEEECCTTCTH
T ss_pred HHHHHHHHcCCCCcCeE---EEECCCchHHHHHHHHHcCCCEEEEECCCH--HHHHHHHHHHHHcCCCeEEEeCchhhch
Confidence 44455566666666666 999999999999999854 5888866554 3333 223334 2678888888776
Q ss_pred --CCCCcccEEEEcc------cccccCCc-------hhH-------HHHHHHHHHcccCCcEEEEEeecccccchHHHHH
Q 047630 294 --FFDNTLDIVHSMH------VLSNWIPT-------TLL-------HFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYV 351 (392)
Q Consensus 294 --f~d~sFDlV~s~~------~l~~~~~~-------~~l-------~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~ 351 (392)
+++++||+|++.. ++++ .++ .++ ..++.++.++|||||++++.+.....++..+.+.
T Consensus 309 ~~~~~~~fD~Vl~D~Pcsg~g~~~~-~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~ 387 (429)
T 1sqg_A 309 QWCGEQQFDRILLDAPCSATGVIRR-HPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIK 387 (429)
T ss_dssp HHHTTCCEEEEEEECCCCCGGGTTT-CTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHH
T ss_pred hhcccCCCCEEEEeCCCCcccccCC-CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHH
Confidence 5668899999732 2222 111 111 4789999999999999999875443344445566
Q ss_pred HHHHHc-CCeEEE--------EEEeeccCCCCcccceeeEEEEEcC
Q 047630 352 PLIESV-GFNKLK--------WVVGRKLDRGPELREMYLSALLEKP 388 (392)
Q Consensus 352 ~ll~~a-Gf~~i~--------w~~~~k~d~~~~~~e~ylsai~~Kp 388 (392)
..+++. +|+.+. +.... .....+.|+.++++|.
T Consensus 388 ~~l~~~~~~~~~~~~~~~~~~~~~~P----~~~~~dGff~a~l~k~ 429 (429)
T 1sqg_A 388 AFLQRTADAELCETGTPEQPGKQNLP----GAEEGDGFFYAKLIKK 429 (429)
T ss_dssp HHHHHCTTCEECSSBCSSSBSEEECC----CTTSCCSEEEEEEEC-
T ss_pred HHHHhCCCCEEeCCCCCCCCeEEECC----CCCCCCceEEEEEEEC
Confidence 677664 576653 11111 1123344556888874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.4e-10 Score=110.95 Aligned_cols=98 Identities=9% Similarity=0.100 Sum_probs=70.8
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhcC-----CccEEEeccCcCCCCCCcccEEEEcc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASRG-----VVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~rg-----~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
..|||+|||+|.++..+++. +..++++|++ ..+.+. +...+ .+.++.+|... ++++++||+|+++.
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s--~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDES--PMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNP 300 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEESC--HHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECC
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEEEECc--HHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECC
Confidence 34599999999999999997 5788885544 344432 22233 25668888776 56778999999998
Q ss_pred ccccc--CCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 307 VLSNW--IPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 307 ~l~~~--~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+|+. ........+++++.++|||||++++..
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 88752 233444578999999999999999865
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.4e-09 Score=98.36 Aligned_cols=131 Identities=11% Similarity=-0.021 Sum_probs=91.5
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH----HHHhcCC---ccEEEeccCcCCC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN----FIASRGV---VPLYISISQRLPF 294 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~~Lpf 294 (392)
-+..+....+.+ ..|||||||+|.++..+++.+. .|+++|+|. ...+ .+...|+ +.+..+|......
T Consensus 11 RL~~i~~~v~~g--~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~--~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~ 86 (244)
T 3gnl_A 11 RLEKVASYITKN--ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVD--GPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE 86 (244)
T ss_dssp HHHHHHTTCCSS--EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSH--HHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHHhCCCC--CEEEEECCccHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEEecchhhccC
Confidence 345555544432 2349999999999999999875 567755443 3333 3333443 6888898776554
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
++..||+|+..... .+.+..++.+..+.|+++|+|++..... .+.+++++.+.||..+.-..+.
T Consensus 87 ~~~~~D~IviagmG-----g~lI~~IL~~~~~~L~~~~~lIlq~~~~-----~~~lr~~L~~~Gf~i~~E~lv~ 150 (244)
T 3gnl_A 87 KKDAIDTIVIAGMG-----GTLIRTILEEGAAKLAGVTKLILQPNIA-----AWQLREWSEQNNWLITSEAILR 150 (244)
T ss_dssp GGGCCCEEEEEEEC-----HHHHHHHHHHTGGGGTTCCEEEEEESSC-----HHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccEEEEeCCc-----hHHHHHHHHHHHHHhCCCCEEEEEcCCC-----hHHHHHHHHHCCCEEEEEEEEE
Confidence 44469998875432 1345678999999999999999997432 4558889999999998877664
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-09 Score=107.60 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=92.5
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--C-CEEEEEecCCCchhHHHH----HhcC--CccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--N-ITIVTTSMNLNGPFNNFI----ASRG--VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g-~~vvg~~iD~~a~~~~~a----a~rg--~i~~~~~d~~~ 291 (392)
...++..++...++.+| ||+|||+|..+..+++. + ..+++ +|++......+ .+.| .+.++++|...
T Consensus 247 ~s~l~~~~l~~~~g~~V---LDlgaG~G~~t~~la~~~~~~~~v~a--~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~ 321 (450)
T 2yxl_A 247 ASAVASIVLDPKPGETV---VDLAAAPGGKTTHLAELMKNKGKIYA--FDVDKMRMKRLKDFVKRMGIKIVKPLVKDARK 321 (450)
T ss_dssp HHHHHHHHHCCCTTCEE---EESSCTTCHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCSEEEECSCTTC
T ss_pred hhHHHHHhcCCCCcCEE---EEeCCCccHHHHHHHHHcCCCCEEEE--EcCCHHHHHHHHHHHHHcCCCcEEEEEcChhh
Confidence 45556666666666666 99999999999999983 3 57888 55544444432 2234 26778888887
Q ss_pred CC--CCCCcccEEEEc------ccccccCCc-------hhH-------HHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 292 LP--FFDNTLDIVHSM------HVLSNWIPT-------TLL-------HFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 292 Lp--f~d~sFDlV~s~------~~l~~~~~~-------~~l-------~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
++ +.+++||+|++. .++++ .++ .++ ..++.++.++|||||++++.+.....++..+.
T Consensus 322 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~-~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~ 400 (450)
T 2yxl_A 322 APEIIGEEVADKVLLDAPCTSSGTIGK-NPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKN 400 (450)
T ss_dssp CSSSSCSSCEEEEEEECCCCCGGGTTT-STTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHH
T ss_pred cchhhccCCCCEEEEcCCCCCCeeecc-ChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHH
Confidence 76 555789999962 22222 111 111 57899999999999999988765544444556
Q ss_pred HHHHHHHc-CCeEEE
Q 047630 350 YVPLIESV-GFNKLK 363 (392)
Q Consensus 350 l~~ll~~a-Gf~~i~ 363 (392)
+...+++. ||+.+.
T Consensus 401 v~~~l~~~~~~~~~~ 415 (450)
T 2yxl_A 401 IRWFLNVHPEFKLVP 415 (450)
T ss_dssp HHHHHHHCSSCEECC
T ss_pred HHHHHHhCCCCEEee
Confidence 77777775 677653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.00 E-value=5.1e-10 Score=97.09 Aligned_cols=99 Identities=13% Similarity=0.169 Sum_probs=68.9
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC-CccEEEeccCcC-CC---CCCcccEEE
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG-VVPLYISISQRL-PF---FDNTLDIVH 303 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg-~i~~~~~d~~~L-pf---~d~sFDlV~ 303 (392)
++.++ ||+|||+|.++..+++.+..+++ +|++....+.+.+ .+ .+.++.+|+... +. .+++||+|+
T Consensus 41 ~~~~v---LD~GcG~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~ 115 (171)
T 1ws6_A 41 RRGRF---LDPFAGSGAVGLEAASEGWEAVL--VEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAF 115 (171)
T ss_dssp TCCEE---EEETCSSCHHHHHHHHTTCEEEE--ECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeE---EEeCCCcCHHHHHHHHCCCeEEE--EeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEE
Confidence 44455 99999999999999999988887 5554444443322 23 467888887653 22 134899999
Q ss_pred EcccccccCCchhHHHHHHHHH--HcccCCcEEEEEeecc
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIY--RVLRPGGLFWLDHFFC 341 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~--RvLKPGG~lii~~~~~ 341 (392)
+...++ .... .+++.+. ++|||||++++.....
T Consensus 116 ~~~~~~--~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 116 MAPPYA--MDLA---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp ECCCTT--SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred ECCCCc--hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 997765 2222 3556665 9999999999887544
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-10 Score=108.50 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=71.1
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCC---EEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCcc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNI---TIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~---~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sF 299 (392)
+.+.++.+| ||||||+|.++..+++.+. .|+++| ++....+.+.+ .+ .+.+..+|....+..+++|
T Consensus 71 l~~~~~~~V---LDiGcG~G~~~~~la~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~f 145 (317)
T 1dl5_A 71 VGLDKGMRV---LEIGGGTGYNAAVMSRVVGEKGLVVSVE--YSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPY 145 (317)
T ss_dssp TTCCTTCEE---EEECCTTSHHHHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred cCCCCcCEE---EEecCCchHHHHHHHHhcCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCe
Confidence 344555555 9999999999999998654 488855 43444443332 23 2678888988765567889
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+|++..+++++. .++.++|||||++++..
T Consensus 146 D~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 146 DVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp EEEEECSBBSCCC---------HHHHHHEEEEEEEEEEB
T ss_pred EEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEE
Confidence 9999999998752 57889999999998864
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.3e-10 Score=105.91 Aligned_cols=95 Identities=9% Similarity=-0.034 Sum_probs=66.9
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-------C-CccEE--EeccCcCCCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-------G-VVPLY--ISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-------g-~i~~~--~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
.|||+|||+|.++..+++. ..|+|+|++. +...+.++ + .+.++ ++|+..++ +++||+|+|..+
T Consensus 77 ~VLDlGcGtG~~s~~la~~-~~V~gvD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~- 149 (265)
T 2oxt_A 77 RVVDLGCGRGGWSYYAASR-PHVMDVRAYT---LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG- 149 (265)
T ss_dssp EEEEESCTTSHHHHHHHTS-TTEEEEEEEC---CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-
T ss_pred EEEEeCcCCCHHHHHHHHc-CcEEEEECch---hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-
Confidence 3499999999999999988 6899966654 21111111 1 25677 78888876 789999999876
Q ss_pred cccCCc----hhHHHHHHHHHHcccCCc--EEEEEeec
Q 047630 309 SNWIPT----TLLHFLMFDIYRVLRPGG--LFWLDHFF 340 (392)
Q Consensus 309 ~~~~~~----~~l~~~L~el~RvLKPGG--~lii~~~~ 340 (392)
++.... .....+|.++.|+||||| .|++..+.
T Consensus 150 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 150 ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 332111 111137899999999999 99987765
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=99.37 Aligned_cols=97 Identities=16% Similarity=0.037 Sum_probs=69.2
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhc----C--CccEEEeccCcCCCCCCcc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASR----G--VVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~r----g--~i~~~~~d~~~Lpf~d~sF 299 (392)
+.+.++.+| ||+|||+|.++..+++.+ ..++++| ++....+.+.++ + .+.+..+|.......+++|
T Consensus 73 ~~~~~~~~v---LdiG~G~G~~~~~l~~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 147 (215)
T 2yxe_A 73 LDLKPGMKV---LEIGTGCGYHAAVTAEIVGEDGLVVSIE--RIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPY 147 (215)
T ss_dssp TTCCTTCEE---EEECCTTSHHHHHHHHHHCTTSEEEEEE--SCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCE
T ss_pred hCCCCCCEE---EEECCCccHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCe
Confidence 334444555 999999999999999864 6888855 434444433322 2 3677788864422236789
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|+|++..+++++. .++.++|||||++++...
T Consensus 148 D~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 148 DRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEESSBBSSCC---------HHHHHTEEEEEEEEEEES
T ss_pred eEEEECCchHHHH---------HHHHHHcCCCcEEEEEEC
Confidence 9999999998752 588999999999988854
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.9e-10 Score=100.59 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~ 290 (392)
...++..++...++.+| ||||||+|..+..+++. +..++++| ++....+.+. +.+ .+.++.+|..
T Consensus 44 ~~~~l~~l~~~~~~~~v---LdiG~G~G~~~~~la~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 118 (210)
T 3c3p_A 44 TGRLLYLLARIKQPQLV---VVPGDGLGCASWWFARAISISSRVVMID--PDRDNVEHARRMLHDNGLIDRVELQVGDPL 118 (210)
T ss_dssp HHHHHHHHHHHHCCSEE---EEESCGGGHHHHHHHTTSCTTCEEEEEE--SCHHHHHHHHHHHHHHSGGGGEEEEESCHH
T ss_pred HHHHHHHHHHhhCCCEE---EEEcCCccHHHHHHHHhCCCCCEEEEEE--CCHHHHHHHHHHHHHCCCCceEEEEEecHH
Confidence 34455555544444555 99999999999999985 66888855 4334443322 223 3678888876
Q ss_pred cC-CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 291 RL-PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 291 ~L-pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
.. +..++ ||+|++.... .....+++++.++|||||++++++..
T Consensus 119 ~~~~~~~~-fD~v~~~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~ 162 (210)
T 3c3p_A 119 GIAAGQRD-IDILFMDCDV------FNGADVLERMNRCLAKNALLIAVNAL 162 (210)
T ss_dssp HHHTTCCS-EEEEEEETTT------SCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred HHhccCCC-CCEEEEcCCh------hhhHHHHHHHHHhcCCCeEEEEECcc
Confidence 53 55556 9999987432 33457999999999999999997654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.8e-10 Score=106.79 Aligned_cols=95 Identities=9% Similarity=-0.017 Sum_probs=67.1
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC--------CccEE--EeccCcCCCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG--------VVPLY--ISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg--------~i~~~--~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
.|||+|||+|.++..++++ ..|+|+|++. +...+.++. .+.++ ++|+..+| +++||+|+|..+
T Consensus 85 ~VLDlGcGtG~~s~~la~~-~~V~gVD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~- 157 (276)
T 2wa2_A 85 TVVDLGCGRGSWSYYAASQ-PNVREVKAYT---LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG- 157 (276)
T ss_dssp EEEEESCTTCHHHHHHHTS-TTEEEEEEEC---CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC-
T ss_pred EEEEeccCCCHHHHHHHHc-CCEEEEECch---hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC-
Confidence 3499999999999999998 6899966654 211111111 25777 78888876 789999999876
Q ss_pred cccCCc----hhHHHHHHHHHHcccCCc--EEEEEeec
Q 047630 309 SNWIPT----TLLHFLMFDIYRVLRPGG--LFWLDHFF 340 (392)
Q Consensus 309 ~~~~~~----~~l~~~L~el~RvLKPGG--~lii~~~~ 340 (392)
+..... .....+|.++.|+||||| .|++..+.
T Consensus 158 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 158 ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 332111 111137899999999999 99987665
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.4e-10 Score=103.26 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHH----HhcC----CccEEEecc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFI----ASRG----VVPLYISIS 289 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~a----a~rg----~i~~~~~d~ 289 (392)
...++..+....+...-..|||||||+|..+..|++. +..+++ +|++....+.+ .+.+ .+.++.+|+
T Consensus 41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda 118 (221)
T 3dr5_A 41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTC--IDPESEHQRQAKALFREAGYSPSRVRFLLSRP 118 (221)
T ss_dssp HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEE--ECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH
Confidence 4455666665554331124499999999999999983 568888 55544444432 2222 367788876
Q ss_pred CcC-C-CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 290 QRL-P-FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 290 ~~L-p-f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
..+ + +.+++||+|++.... .....+++++.++|||||++++++...
T Consensus 119 ~~~l~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 119 LDVMSRLANDSYQLVFGQVSP------MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp HHHGGGSCTTCEEEEEECCCT------TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred HHHHHHhcCCCcCeEEEcCcH------HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 553 2 337899999986543 233568999999999999999987543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=104.02 Aligned_cols=106 Identities=13% Similarity=0.063 Sum_probs=72.7
Q ss_pred CcccEEEEEcCCc--chHHHHHHH---cCCEEEEEecCCCchhHHHHHhc------CCccEEEeccCcCC------CCCC
Q 047630 235 GTIRIGLDIGGGV--ATFAVRMME---RNITIVTTSMNLNGPFNNFIASR------GVVPLYISISQRLP------FFDN 297 (392)
Q Consensus 235 ~~ir~VLDIGCGt--G~~a~~La~---~g~~vvg~~iD~~a~~~~~aa~r------g~i~~~~~d~~~Lp------f~d~ 297 (392)
..++.+||||||+ +.+...+++ .+..|+++| .+..+.+.+.++ +.+.++++|+.+++ ...+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD--~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVD--NDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRD 154 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEE--CCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEe--CChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccc
Confidence 3466779999997 434455444 467888855 434444422221 13678999988752 1135
Q ss_pred ccc-----EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 298 TLD-----IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 298 sFD-----lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
+|| .|+++.+|||+.+.+....+++++.++|+|||+|+++++...
T Consensus 155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 566 588889998865555467899999999999999999987653
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-08 Score=95.06 Aligned_cols=129 Identities=13% Similarity=0.138 Sum_probs=88.3
Q ss_pred HHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH----HHHhcCC---ccEEEeccC-cCCC
Q 047630 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN----FIASRGV---VPLYISISQ-RLPF 294 (392)
Q Consensus 225 I~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~-~Lpf 294 (392)
+..+..+.+.+ .+|||||||+|.++..+++.+. .|+++|+| ....+ .+...|. +.+..+|.. .++.
T Consensus 6 L~~l~~~v~~g--~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~--~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~ 81 (225)
T 3kr9_A 6 LELVASFVSQG--AILLDVGSDHAYLPIELVERGQIKSAIAGEVV--EGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE 81 (225)
T ss_dssp HHHHHTTSCTT--EEEEEETCSTTHHHHHHHHTTSEEEEEEEESS--HHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred HHHHHHhCCCC--CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCceEEEEECchhhhccc
Confidence 44455544333 2349999999999999999875 56675544 33333 3334443 678888863 4442
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
...||+|+....- ...+..++.+..+.|+++|+|++.... -...+++.+.+.||..+.-..+.
T Consensus 82 -~~~~D~IviaG~G-----g~~i~~Il~~~~~~L~~~~~lVlq~~~-----~~~~vr~~L~~~Gf~i~~e~lv~ 144 (225)
T 3kr9_A 82 -TDQVSVITIAGMG-----GRLIARILEEGLGKLANVERLILQPNN-----REDDLRIWLQDHGFQIVAESILE 144 (225)
T ss_dssp -GGCCCEEEEEEEC-----HHHHHHHHHHTGGGCTTCCEEEEEESS-----CHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -CcCCCEEEEcCCC-----hHHHHHHHHHHHHHhCCCCEEEEECCC-----CHHHHHHHHHHCCCEEEEEEEEE
Confidence 2269998875432 133567899999999999999997652 23458889999999999877654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-10 Score=101.29 Aligned_cols=95 Identities=14% Similarity=0.051 Sum_probs=70.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-------EEEEEecCCCchhHHHHHh----cC-------CccEEEeccCcC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-------TIVTTSMNLNGPFNNFIAS----RG-------VVPLYISISQRL 292 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-------~vvg~~iD~~a~~~~~aa~----rg-------~i~~~~~d~~~L 292 (392)
+.++.+| ||||||+|.++..+++... .++++| ++....+.+.+ .+ .+.+..+|....
T Consensus 78 ~~~~~~V---LdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 152 (227)
T 2pbf_A 78 LKPGSRA---IDVGSGSGYLTVCMAIKMNVLENKNSYVIGLE--RVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV 152 (227)
T ss_dssp SCTTCEE---EEESCTTSHHHHHHHHHTTTTTCTTCEEEEEE--SCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred CCCCCEE---EEECCCCCHHHHHHHHHhcccCCCCCEEEEEe--CCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc
Confidence 4455555 9999999999999998643 888855 43444433222 22 367888888775
Q ss_pred C----CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 293 P----FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 293 p----f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
. ..+++||+|++...++++ +.++.++|||||++++...
T Consensus 153 ~~~~~~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 153 NEEEKKELGLFDAIHVGASASEL---------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CHHHHHHHCCEEEEEECSBBSSC---------CHHHHHHEEEEEEEEEEEE
T ss_pred ccccCccCCCcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEc
Confidence 5 556789999999888663 4788999999999988854
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.3e-09 Score=100.13 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=72.0
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHHH----HHhcC--CccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+.++.++ ||+|||+|.++..+++.+. .|+++|++ ....+. +..++ .+.++.+|+..++. +++||+|
T Consensus 117 ~~~~~~V---LDlgcG~G~~s~~la~~~~~~~V~~vD~s--~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~V 190 (272)
T 3a27_A 117 SNENEVV---VDMFAGIGYFTIPLAKYSKPKLVYAIEKN--PTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRV 190 (272)
T ss_dssp CCTTCEE---EETTCTTTTTHHHHHHHTCCSEEEEEECC--HHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEE
T ss_pred cCCCCEE---EEecCcCCHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEE
Confidence 3444445 9999999999999999744 88885544 344332 23333 25788999888744 6789999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
++.... ....++.++.++|||||++++..+...
T Consensus 191 i~d~p~-------~~~~~l~~~~~~LkpgG~l~~s~~~~~ 223 (272)
T 3a27_A 191 IMGYVH-------KTHKFLDKTFEFLKDRGVIHYHETVAE 223 (272)
T ss_dssp EECCCS-------SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred EECCcc-------cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence 987654 223588999999999999998887553
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-09 Score=101.39 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=74.8
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHH----hc--------C--CccEEEeccCc-CC--CCCCcc
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIA----SR--------G--VVPLYISISQR-LP--FFDNTL 299 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa----~r--------g--~i~~~~~d~~~-Lp--f~d~sF 299 (392)
.|||||||+|.++..+++.+ ..++|+| ++....+.+. .. + .+.++.+|+.. ++ +.++++
T Consensus 52 ~vLDiGcG~G~~~~~la~~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 52 TIADIGCGFGGLMIDLSPAFPEDLILGME--IRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp EEEEETCTTSHHHHHHHHHSTTSEEEEEE--SCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred EEEEEcCCCCHHHHHHHHhCCCCCEEEEE--cCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 34999999999999999975 4688854 5344443221 11 3 36788899876 66 778899
Q ss_pred cEEEEcccccccCCch------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCC
Q 047630 300 DIVHSMHVLSNWIPTT------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGF 359 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf 359 (392)
|.|+..+.- .|.... ....++.++.++|||||+|++... .+...+...+.+.+.|.
T Consensus 130 d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td---~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 130 SKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD---VKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEES---CHHHHHHHHHHHHHSTT
T ss_pred CEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec---cHHHHHHHHHHHHhCcC
Confidence 999865422 110000 013699999999999999988532 23333445556666663
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=97.80 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=86.2
Q ss_pred HHHHHHHHHhh-CCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhcCCc-cEEEeccCcC
Q 047630 221 LDFSIDEVLAT-KKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASRGVV-PLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l-~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~rg~i-~~~~~d~~~L 292 (392)
.+.+.+.+... .+.++| ||+|||+|.++..++.. ++++++ +|++..+.+. ++..|.- .+.+.+....
T Consensus 36 ld~fY~~~~~~l~~~~~V---LDlGCG~GplAl~l~~~~p~a~~~A--~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~ 110 (200)
T 3fzg_A 36 LNDFYTYVFGNIKHVSSI---LDFGCGFNPLALYQWNENEKIIYHA--YDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD 110 (200)
T ss_dssp HHHHHHHHHHHSCCCSEE---EEETCTTHHHHHHHHCSSCCCEEEE--ECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH
T ss_pred HHHHHHHHHhhcCCCCeE---EEecCCCCHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHhcCCCccEEEeccccc
Confidence 44444555543 334555 99999999999999875 667777 5554555553 3333532 3555555443
Q ss_pred CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc-------ccchHHHHHHHHHHcCCeEEEEE
Q 047630 293 PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-------GAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~-------~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
.+.++||+|++..++|++ ++.+..+.++.+.|||||+|+-.....- .+.....|++.+.+ .+.++.-.
T Consensus 111 -~~~~~~DvVLa~k~LHlL---~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~-~~~~~~~~ 185 (200)
T 3fzg_A 111 -VYKGTYDVVFLLKMLPVL---KQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKG-WIKILDSK 185 (200)
T ss_dssp -HTTSEEEEEEEETCHHHH---HHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTT-TSCEEEEE
T ss_pred -CCCCCcChhhHhhHHHhh---hhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccC-cceeeeee
Confidence 457889999999999997 2233577799999999999987763211 12224445555533 45555433
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-10 Score=103.02 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchh--HHHHHhcC---CccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPF--NNFIASRG---VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~--~~~aa~rg---~i~~~~~d~~~L 292 (392)
...++..++...++.+| ||||||+|..+..+++. +..++++|++..... .+.+.+.+ .+.++++|+..+
T Consensus 48 ~~~~l~~l~~~~~~~~V---LDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~ 124 (242)
T 3r3h_A 48 QAQFMQMLIRLTRAKKV---LELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT 124 (242)
T ss_dssp HHHHHHHHHHHHTCSEE---EEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HHHHHHHHHhhcCcCEE---EEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 34455555555554555 99999999999999983 678999776652211 12333333 478889887654
Q ss_pred -CCC-----CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 293 -PFF-----DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 293 -pf~-----d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+.. +++||+|++.... .....+++++.++|||||++++++...
T Consensus 125 l~~~~~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 125 LHSLLNEGGEHQFDFIFIDADK------TNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp HHHHHHHHCSSCEEEEEEESCG------GGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred HHHHhhccCCCCEeEEEEcCCh------HHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 222 5789999986542 344568999999999999999988653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8e-10 Score=107.29 Aligned_cols=99 Identities=11% Similarity=-0.036 Sum_probs=66.0
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEec----CCCchhHH-HHHhc--CCccEEEe-ccCcCCCCCCcccEEEEccccc-
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSM----NLNGPFNN-FIASR--GVVPLYIS-ISQRLPFFDNTLDIVHSMHVLS- 309 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~i----D~~a~~~~-~aa~r--g~i~~~~~-d~~~Lpf~d~sFDlV~s~~~l~- 309 (392)
+|||+|||+|.++..++++ ..|+++|+ +. ..... .+... ..+.++.+ |+..++ +++||+|+|..+++
T Consensus 85 ~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~~~~ 160 (305)
T 2p41_A 85 KVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGP-GHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIGESS 160 (305)
T ss_dssp EEEEETCTTSHHHHHHHTS-TTEEEEEEECCCST-TSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCCCCC
T ss_pred EEEEEcCCCCHHHHHHHhc-CCEEEEeccccCch-hHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEECCcccc
Confidence 3499999999999999998 47888776 21 11100 01111 23677777 777665 56899999987653
Q ss_pred --ccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 310 --NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 310 --~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+..+......+|.++.++|||||.|++..+..
T Consensus 161 g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 161 PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 11111111257899999999999999866544
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.7e-09 Score=96.27 Aligned_cols=118 Identities=13% Similarity=0.062 Sum_probs=79.3
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
.+.++.+| ||+|||+|.++..+++.+..+++ +|++....+.+.+ .+ .+.+..+|.....+.+++||+|
T Consensus 88 ~~~~~~~v---ldiG~G~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 162 (248)
T 2yvl_A 88 NLNKEKRV---LEFGTGSGALLAVLSEVAGEVWT--FEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAA 162 (248)
T ss_dssp TCCTTCEE---EEECCTTSHHHHHHHHHSSEEEE--ECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEE
T ss_pred CCCCCCEE---EEeCCCccHHHHHHHHhCCEEEE--EecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEE
Confidence 34455555 99999999999999988888888 5554444443332 23 3677778877754366789999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
++... +. ..+++++.++|||||.+++..... +.. ..+.+.+++. |..++.
T Consensus 163 ~~~~~-----~~---~~~l~~~~~~L~~gG~l~~~~~~~--~~~-~~~~~~l~~~-f~~~~~ 212 (248)
T 2yvl_A 163 FVDVR-----EP---WHYLEKVHKSLMEGAPVGFLLPTA--NQV-IKLLESIENY-FGNLEV 212 (248)
T ss_dssp EECSS-----CG---GGGHHHHHHHBCTTCEEEEEESSH--HHH-HHHHHHSTTT-EEEEEE
T ss_pred EECCc-----CH---HHHHHHHHHHcCCCCEEEEEeCCH--HHH-HHHHHHHHhh-CCcceE
Confidence 98421 22 247899999999999999886432 122 2355555555 765543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8.6e-09 Score=99.41 Aligned_cols=117 Identities=12% Similarity=-0.004 Sum_probs=80.4
Q ss_pred hCCCCcccEEEEEcC------CcchHHHHHHH---cCCEEEEEecCCCchhHHHHHhcCCccE-EEeccCcCCCCCCccc
Q 047630 231 TKKPGTIRIGLDIGG------GVATFAVRMME---RNITIVTTSMNLNGPFNNFIASRGVVPL-YISISQRLPFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGC------GtG~~a~~La~---~g~~vvg~~iD~~a~~~~~aa~rg~i~~-~~~d~~~Lpf~d~sFD 300 (392)
+.++.+| ||+|| |+|. ..+++ .+..|+|+|++.. . . .+.+ +++|+..+++. ++||
T Consensus 61 l~~g~~V---LDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v-~-~v~~~i~gD~~~~~~~-~~fD 125 (290)
T 2xyq_A 61 VPYNMRV---IHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------V-S-DADSTLIGDCATVHTA-NKWD 125 (290)
T ss_dssp CCTTCEE---EEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------B-C-SSSEEEESCGGGCCCS-SCEE
T ss_pred CCCCCEE---EEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------C-C-CCEEEEECccccCCcc-Cccc
Confidence 3444455 99999 4476 33333 2468888766652 1 2 3789 99999988764 6899
Q ss_pred EEEEcccccc--------cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 301 IVHSMHVLSN--------WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 301 lV~s~~~l~~--------~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+|++....+. .......+.+++++.|+|||||.|++..+..... +++.+++++.||..++..
T Consensus 126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~---~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN---ADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC---HHHHHHHTTEEEEEEEEE
T ss_pred EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH---HHHHHHHHHcCCcEEEEE
Confidence 9999744221 1112334679999999999999999987654322 247778999999887665
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-09 Score=107.72 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=72.0
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHH----hcCC-ccEEEeccCcCCCCCCcccEEEEc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIA----SRGV-VPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa----~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
++++| ||+|||+|.++..+++.+ ..++++| ++..+.+.+. ..+. +.++.+|.... .+++||+|+++
T Consensus 196 ~~~~V---LDlGcG~G~~~~~la~~~~~~~v~~vD--~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Iv~~ 268 (343)
T 2pjd_A 196 TKGKV---LDVGCGAGVLSVAFARHSPKIRLTLCD--VSAPAVEASRATLAANGVEGEVFASNVFSE--VKGRFDMIISN 268 (343)
T ss_dssp CCSBC---CBTTCTTSHHHHHHHHHCTTCBCEEEE--SBHHHHHHHHHHHHHTTCCCEEEECSTTTT--CCSCEEEEEEC
T ss_pred CCCeE---EEecCccCHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHhCCCCEEEEcccccc--ccCCeeEEEEC
Confidence 34555 999999999999999876 4788855 4334333222 2332 45677776654 37899999999
Q ss_pred ccccccC--CchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 306 HVLSNWI--PTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 306 ~~l~~~~--~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
..+|+.. .....+.+++++.|+|||||.+++...
T Consensus 269 ~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 269 PPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 9887521 234567899999999999999988754
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-09 Score=108.39 Aligned_cols=103 Identities=16% Similarity=0.066 Sum_probs=69.6
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHH-----------HhcC----CccEEEeccCcC-
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFI-----------ASRG----VVPLYISISQRL- 292 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~a-----------a~rg----~i~~~~~d~~~L- 292 (392)
+.++.+| ||||||+|.++..+++. + ..|+|+|++ ......+ ...| .+.+++++....
T Consensus 240 l~~g~~V---LDLGCGsG~la~~LA~~~g~~~V~GVDis--~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~ 314 (433)
T 1u2z_A 240 LKKGDTF---MDLGSGVGNCVVQAALECGCALSFGCEIM--DDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN 314 (433)
T ss_dssp CCTTCEE---EEESCTTSHHHHHHHHHHCCSEEEEEECC--HHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC
T ss_pred CCCCCEE---EEeCCCcCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccc
Confidence 3444455 99999999999999984 4 468885544 3332222 2223 356777654321
Q ss_pred -CC--CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 293 -PF--FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 293 -pf--~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
++ ..++||+|+++.++. . .++..+|.++.|+|||||.+++.+.+..
T Consensus 315 ~~~~~~~~~FDvIvvn~~l~-~---~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 315 NRVAELIPQCDVILVNNFLF-D---EDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp HHHHHHGGGCSEEEECCTTC-C---HHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred cccccccCCCCEEEEeCccc-c---ccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 22 247899999876662 2 4566789999999999999999865443
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=112.37 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=70.2
Q ss_pred EEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
+|||||||+|.++..+++.+ ..|+++|++ ++.+. +.+.+ .+.++.+|..+++++ ++||+|++...+++
T Consensus 161 ~VLDiGcGtG~la~~la~~~~~~V~gvD~s---~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~ 236 (480)
T 3b3j_A 161 IVLDVGCGSGILSFFAAQAGARKIYAVEAS---TMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM 236 (480)
T ss_dssp EEEEESCSTTHHHHHHHHTTCSEEEEEECH---HHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHH
T ss_pred EEEEecCcccHHHHHHHHcCCCEEEEEEcH---HHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHh
Confidence 45999999999999999875 488885543 23332 22233 378899999888765 58999999877777
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+..+ .....+.++.++|||||++++..
T Consensus 237 ~~~e-~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 237 LFNE-RMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HTCH-HHHHHHHHGGGGEEEEEEEESCE
T ss_pred cCcH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence 5443 44567779999999999997543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-09 Score=108.45 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~ 291 (392)
...++..++...++.+| ||+|||+|..+..+++. ...|++ +|++....+ .+.+.|. +.++.+|...
T Consensus 93 ss~l~~~~L~~~~g~~V---LDlcaGpGgkt~~lA~~~~~~g~V~A--vDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~ 167 (456)
T 3m4x_A 93 SAMIVGTAAAAKPGEKV---LDLCAAPGGKSTQLAAQMKGKGLLVT--NEIFPKRAKILSENIERWGVSNAIVTNHAPAE 167 (456)
T ss_dssp TTHHHHHHHCCCTTCEE---EESSCTTCHHHHHHHHHHTTCSEEEE--ECSSHHHHHHHHHHHHHHTCSSEEEECCCHHH
T ss_pred HHHHHHHHcCCCCCCEE---EEECCCcCHHHHHHHHHcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCceEEEeCCHHH
Confidence 34455666666666666 99999999999999874 357888 555444443 2333343 5667778776
Q ss_pred CC-CCCCcccEEEEccccc---ccCCch----------------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHH
Q 047630 292 LP-FFDNTLDIVHSMHVLS---NWIPTT----------------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYV 351 (392)
Q Consensus 292 Lp-f~d~sFDlV~s~~~l~---~~~~~~----------------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~ 351 (392)
++ ..+++||+|++.-... .+.... ....+|.++.++|||||+|+++......++..+.+.
T Consensus 168 l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~ 247 (456)
T 3m4x_A 168 LVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIIS 247 (456)
T ss_dssp HHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHH
T ss_pred hhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHH
Confidence 64 3467899999753211 111001 123689999999999999998876555555567788
Q ss_pred HHHHHcCCeEEE
Q 047630 352 PLIESVGFNKLK 363 (392)
Q Consensus 352 ~ll~~aGf~~i~ 363 (392)
.++++.+|+.+.
T Consensus 248 ~~l~~~~~~l~~ 259 (456)
T 3m4x_A 248 WLVENYPVTIEE 259 (456)
T ss_dssp HHHHHSSEEEEC
T ss_pred HHHHhCCCEEEe
Confidence 889998876654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.4e-09 Score=100.28 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=79.5
Q ss_pred EEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHHHHhc------CCccEEEeccCcC--CCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNFIASR------GVVPLYISISQRL--PFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~aa~r------g~i~~~~~d~~~L--pf~d~sFDlV~s~~~l 308 (392)
.|||||||+|.++..+++ .+..+++++ ++....+.+.++ ..+.++++|...+ .+.+++||+|++....
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~VE--idp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVVE--LDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEEE--SCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEEE--CCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 569999999999999998 367787755 534554444432 1367888887654 3457899999986433
Q ss_pred cccCCchhH--HHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 309 SNWIPTTLL--HFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 309 ~~~~~~~~l--~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
+. .....+ ..++++++|+|||||+|++...-.........+.+.+++. |..+..
T Consensus 170 ~~-~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~ 225 (317)
T 3gjy_A 170 GA-ITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAV 225 (317)
T ss_dssp TS-CCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEE
T ss_pred cc-ccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCceEE
Confidence 22 222221 5799999999999999988765332222222344455554 655543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.9e-09 Score=101.94 Aligned_cols=119 Identities=10% Similarity=0.046 Sum_probs=82.5
Q ss_pred EEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHHHHH----hcC--CccEEEeccCc-CCC-CCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQR-LPF-FDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~-Lpf-~d~sFDlV~s~~~l 308 (392)
.|||+| |+|.++..++..+. .|++ +|++..+.+.+. +.| .+.++.+|+.. +|. .+++||+|++...+
T Consensus 175 ~VLDlG-G~G~~~~~la~~~~~~~v~~--vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 175 DIFVLG-DDDLTSIALMLSGLPKRIAV--LDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp EEEEES-CTTCHHHHHHHHTCCSEEEE--ECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred EEEEEC-CCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 459999 99999999998765 7877 555444444332 234 37889999888 764 46789999998766
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEE-EEEeecccccch--HHHHHHHHH-HcCCeEEEEE
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLF-WLDHFFCVGAQL--EDVYVPLIE-SVGFNKLKWV 365 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~l-ii~~~~~~~~~l--~~~l~~ll~-~aGf~~i~w~ 365 (392)
+.. ....++.++.++|||||.+ ++.. ....... ...+.+++. +.||......
T Consensus 252 ~~~----~~~~~l~~~~~~LkpgG~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 307 (373)
T 2qm3_A 252 TLE----AIRAFVGRGIATLKGPRCAGYFGI-TRRESSLDKWREIQKLLLNEFNVVITDII 307 (373)
T ss_dssp SHH----HHHHHHHHHHHTBCSTTCEEEEEE-CTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred chH----HHHHHHHHHHHHcccCCeEEEEEE-ecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence 543 2478999999999999954 4443 3211221 144667777 8898775543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-09 Score=99.05 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=69.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHHHHH----h-------cCCccEEEeccCcCCCCC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNNFIA----S-------RGVVPLYISISQRLPFFD 296 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~~aa----~-------rg~i~~~~~d~~~Lpf~d 296 (392)
+.++.+| ||+|||+|.++..+++. + ..++++| ++....+.+. + ...+.+..+|....+..+
T Consensus 75 ~~~~~~v---LDiG~G~G~~~~~la~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 149 (226)
T 1i1n_A 75 LHEGAKA---LDVGSGSGILTACFARMVGCTGKVIGID--HIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEE 149 (226)
T ss_dssp SCTTCEE---EEETCTTSHHHHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGG
T ss_pred CCCCCEE---EEEcCCcCHHHHHHHHHhCCCcEEEEEe--CCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccC
Confidence 3344445 99999999999999985 3 5788855 4344443222 2 124678888887766667
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
++||+|++...++++ +.++.++|||||++++...
T Consensus 150 ~~fD~i~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 150 APYDAIHVGAAAPVV---------PQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp CCEEEEEECSBBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred CCcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEe
Confidence 889999999887653 4788999999999998754
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-09 Score=108.61 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=91.0
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHH----HhcCC-ccEEEeccCcCC
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFI----ASRGV-VPLYISISQRLP 293 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~a----a~rg~-i~~~~~d~~~Lp 293 (392)
..++..++...++.+| ||+|||+|..+..+++. ...|++ +|++....+.+ .+.|. +.++.+|...++
T Consensus 90 s~l~a~~L~~~~g~~V---LDlgaGpG~kt~~LA~~~~~~g~V~A--vDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~ 164 (464)
T 3m6w_A 90 AQAVGVLLDPKPGERV---LDLAAAPGGKTTHLAARMGGKGLLLA--NEVDGKRVRGLLENVERWGAPLAVTQAPPRALA 164 (464)
T ss_dssp THHHHHHHCCCTTCEE---EESSCTTCHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHH
T ss_pred HHHHHHhcCcCCCCEE---EEEcCCcCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCeEEEEECCHHHhh
Confidence 4455566666666666 99999999999999974 247877 55544444432 23343 667778877765
Q ss_pred -CCCCcccEEEEccc------ccccC------Cchh-------HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHH
Q 047630 294 -FFDNTLDIVHSMHV------LSNWI------PTTL-------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPL 353 (392)
Q Consensus 294 -f~d~sFDlV~s~~~------l~~~~------~~~~-------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~l 353 (392)
+.+++||+|++.-. +..-. .+++ ...+|.++.++|||||+|+++......++.++.+..+
T Consensus 165 ~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~ 244 (464)
T 3m6w_A 165 EAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHF 244 (464)
T ss_dssp HHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred hhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHH
Confidence 35688999996311 11100 1111 2678999999999999999887554445555667777
Q ss_pred HHHc-CCeEEE
Q 047630 354 IESV-GFNKLK 363 (392)
Q Consensus 354 l~~a-Gf~~i~ 363 (392)
+++. +|+.+.
T Consensus 245 l~~~~~~~l~~ 255 (464)
T 3m6w_A 245 LKAHPEFRLED 255 (464)
T ss_dssp HHHCTTEEEEC
T ss_pred HHHCCCcEEEe
Confidence 8776 576654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-08 Score=101.99 Aligned_cols=124 Identities=15% Similarity=0.062 Sum_probs=85.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFDl 301 (392)
..++..+ ||+|||+|.++..++..+. .++|+|+| ..+.+. +...| .+.+.++|+..+++++++||+
T Consensus 215 ~~~~~~v---LD~gCGsG~~~i~~a~~~~~~~v~g~Dis--~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~ 289 (373)
T 3tm4_A 215 ELDGGSV---LDPMCGSGTILIELALRRYSGEIIGIEKY--RKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDF 289 (373)
T ss_dssp TCCSCCE---EETTCTTCHHHHHHHHTTCCSCEEEEESC--HHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEE
T ss_pred cCCCCEE---EEccCcCcHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCE
Confidence 4555556 9999999999999999877 88886654 344432 23334 378999999999988899999
Q ss_pred EEEcccccccCC-c---hh-HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 302 VHSMHVLSNWIP-T---TL-LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 302 V~s~~~l~~~~~-~---~~-l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
|+++..+..... . .. ...+++++.|+| ||.+++... ..+.+.+.+++.||+..+-...
T Consensus 290 Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~------~~~~~~~~~~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 290 AISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT------EKKAIEEAIAENGFEIIHHRVI 352 (373)
T ss_dssp EEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES------CHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC------CHHHHHHHHHHcCCEEEEEEEE
Confidence 999866543211 1 11 256889999999 444433321 1234667889999998776544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=101.36 Aligned_cols=109 Identities=9% Similarity=0.013 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHH----HhcC---CccEEEeccC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFI----ASRG---VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~a----a~rg---~i~~~~~d~~ 290 (392)
...++..++...+..+| ||||||+|..+..+++. +..++++|++. ...+.+ .+.+ .+.++.+|+.
T Consensus 67 ~~~ll~~l~~~~~~~~V---LeiG~G~G~~~~~la~~~~~~~~v~~iD~s~--~~~~~a~~~~~~~g~~~~i~~~~gda~ 141 (247)
T 1sui_A 67 EGQFLSMLLKLINAKNT---MEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYELGLPVIKKAGVDHKIDFREGPAL 141 (247)
T ss_dssp HHHHHHHHHHHTTCCEE---EEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHhhCcCEE---EEeCCCcCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCeEEEECCHH
Confidence 34455666665555555 99999999999999985 67888855543 444322 2233 2678888865
Q ss_pred cC-CC------CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 291 RL-PF------FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 291 ~L-pf------~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
.. +. .+++||+|++.... .....+++++.++|||||++++++..
T Consensus 142 ~~l~~l~~~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 142 PVLDEMIKDEKNHGSYDFIFVDADK------DNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp HHHHHHHHSGGGTTCBSEEEECSCS------TTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred HHHHHHHhccCCCCCEEEEEEcCch------HHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 43 32 16789999986432 33457999999999999999998743
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-09 Score=105.79 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=71.3
Q ss_pred EEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-HHHhcC---CccEEEeccCcCCCCCCcccEEEEcccccccCCc
Q 047630 240 GLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-FIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPT 314 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~ 314 (392)
|||||||+|.++...++.|+ .|++++.+..+.... .+..+| .|.++.++++.+.++ +.||+|++-..-.....+
T Consensus 87 VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e 165 (376)
T 4hc4_A 87 VLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHE 165 (376)
T ss_dssp EEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTT
T ss_pred EEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccccccc
Confidence 59999999999999898885 688966543111111 233444 378999999998876 579999995444443444
Q ss_pred hhHHHHHHHHHHcccCCcEEEEE
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~ 337 (392)
..+..++....|.|||||.++..
T Consensus 166 ~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 166 SMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp CSHHHHHHHHHHHEEEEEEEESC
T ss_pred chhhhHHHHHHhhCCCCceECCc
Confidence 56778999999999999998543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=99.95 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=75.0
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----cCC---ccEEEeccCc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----RGV---VPLYISISQR 291 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----rg~---i~~~~~d~~~ 291 (392)
..++..++...++.+| ||||||+|..+..+++. +..++++|++ ....+.+.+ .+. +.+..+|...
T Consensus 49 ~~~l~~l~~~~~~~~V---LdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (239)
T 2hnk_A 49 GQFLNILTKISGAKRI---IEIGTFTGYSSLCFASALPEDGKILCCDVS--EEWTNVARKYWKENGLENKIFLKLGSALE 123 (239)
T ss_dssp HHHHHHHHHHHTCSEE---EEECCTTCHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHhhCcCEE---EEEeCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 3445555555555555 99999999999999986 5788885543 344433322 232 6777887543
Q ss_pred -CC--------------CCC--CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 292 -LP--------------FFD--NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 292 -Lp--------------f~d--~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
++ |++ ++||+|++.... .....+++++.++|||||++++.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 124 TLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK------ENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp HHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred HHHHHHhhcccccccccccCCCCCcCEEEEeCCH------HHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 22 233 789999987543 33457899999999999999998743
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-09 Score=99.88 Aligned_cols=97 Identities=16% Similarity=0.113 Sum_probs=69.4
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCC-cc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDN-TL 299 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~-sF 299 (392)
.+.+.++.+| ||||||+|.++..+++.+ ..++++| ++....+.+.+ .+ .+.+..+|. ..+++++ .|
T Consensus 86 ~l~~~~~~~v---LdiG~G~G~~~~~la~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~f 159 (235)
T 1jg1_A 86 IANLKPGMNI---LEVGTGSGWNAALISEIVKTDVYTIE--RIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPY 159 (235)
T ss_dssp HHTCCTTCCE---EEECCTTSHHHHHHHHHHCSCEEEEE--SCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCE
T ss_pred hcCCCCCCEE---EEEeCCcCHHHHHHHHHhCCEEEEEe--CCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCc
Confidence 3445555566 999999999999999865 7888855 43344443332 23 267778886 4455544 49
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|+|++..+++++ ..++.++|||||++++...
T Consensus 160 D~Ii~~~~~~~~---------~~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 160 DVIIVTAGAPKI---------PEPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp EEEEECSBBSSC---------CHHHHHTEEEEEEEEEEEC
T ss_pred cEEEECCcHHHH---------HHHHHHhcCCCcEEEEEEe
Confidence 999999988775 2478899999999998864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.8e-09 Score=97.07 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=74.1
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCc-
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQR- 291 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~- 291 (392)
.++..++...++.+| ||||||+|..+..+++. +..++++| ++....+.+.+ .+ .+.++.+++..
T Consensus 62 ~~l~~l~~~~~~~~v---LdiG~G~G~~~~~la~~~~~~~~v~~iD--~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 136 (232)
T 3cbg_A 62 QFLGLLISLTGAKQV---LEIGVFRGYSALAMALQLPPDGQIIACD--QDPNATAIAKKYWQKAGVAEKISLRLGPALAT 136 (232)
T ss_dssp HHHHHHHHHHTCCEE---EEECCTTSHHHHHHHTTSCTTCEEEEEE--SCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHhcCCCEE---EEecCCCCHHHHHHHHhCCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 344455544444555 99999999999999985 56888855 43344433322 23 26788887533
Q ss_pred ---CCCCC--CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 292 ---LPFFD--NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 292 ---Lpf~d--~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
++..+ ++||+|++.... .....+++++.++|||||++++++...
T Consensus 137 l~~l~~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 137 LEQLTQGKPLPEFDLIFIDADK------RNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp HHHHHTSSSCCCEEEEEECSCG------GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred HHHHHhcCCCCCcCEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 33334 789999976542 344678999999999999999987543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-08 Score=89.48 Aligned_cols=107 Identities=7% Similarity=0.032 Sum_probs=71.9
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
.|||+|||+|.++..+++.+. .++++| ++....+.+.++- .+.++++|+..++ ++||+|+++..++++....
T Consensus 54 ~vlD~gcG~G~~~~~l~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~- 127 (200)
T 1ne2_A 54 SVIDAGTGNGILACGSYLLGAESVTAFD--IDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHS- 127 (200)
T ss_dssp EEEEETCTTCHHHHHHHHTTBSEEEEEE--SCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC--------
T ss_pred EEEEEeCCccHHHHHHHHcCCCEEEEEE--CCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCch-
Confidence 349999999999999999865 588855 5344444444432 4789999988875 6899999999988764322
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG 358 (392)
...+++++.+++ |+.+++.. . ...+.+.+.+++.|
T Consensus 128 ~~~~l~~~~~~~--g~~~~~~~-~----~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 128 DRAFIDKAFETS--MWIYSIGN-A----KARDFLRREFSARG 162 (200)
T ss_dssp CHHHHHHHHHHE--EEEEEEEE-G----GGHHHHHHHHHHHE
T ss_pred hHHHHHHHHHhc--CcEEEEEc-C----chHHHHHHHHHHCC
Confidence 246899999998 55333332 1 12344677888888
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8e-10 Score=115.89 Aligned_cols=120 Identities=14% Similarity=0.139 Sum_probs=84.2
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcC--CCCCCcccEEEEccccccc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRL--PFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~L--pf~d~sFDlV~s~~~l~~~ 311 (392)
|||||||.|.++..|++.|..|+|+| ++....+ .+.+++. +.+.+++++++ ++.+++||+|+|+.+++|+
T Consensus 70 vLDvGCG~G~~~~~la~~ga~V~giD--~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv 147 (569)
T 4azs_A 70 VLDLGCAQGFFSLSLASKGATIVGID--FQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHI 147 (569)
T ss_dssp EEEETCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHHH
T ss_pred EEEECCCCcHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhcC
Confidence 49999999999999999999999955 5333333 2334452 68889998887 5678899999999999997
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccch------HHHHHHHHHHcCCeEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL------EDVYVPLIESVGFNKL 362 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l------~~~l~~ll~~aGf~~i 362 (392)
.++... ..+..+.+.|+++|..++..+...+..+ ..+|.++++..+|..+
T Consensus 148 ~~~~~~-~~~~~~~~tl~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~i~~~~~~~~ 203 (569)
T 4azs_A 148 VHLHGI-DEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQPDDPRELIEQCAFYRL 203 (569)
T ss_dssp HHHHCH-HHHHHHHHHHHHHSSEEEEECCCTTSSSGGGGGSCSSGGGGTTTSSEEEE
T ss_pred CCHHHH-HHHHHHHHHhccccceeeEEeccccccccccCCCCccHHHhcCHHHHHHH
Confidence 554433 3345677888999887776654322211 2235566666666544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=100.55 Aligned_cols=138 Identities=13% Similarity=0.012 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH--cC-CEEEEEecCCCchhHHH----HHhcC--CccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME--RN-ITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~--~g-~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~ 291 (392)
...++..++...++.+| ||+|||+|..+..+++ .+ ..++++|++ ....+. +.+.| .+.++.+|...
T Consensus 71 ~s~l~~~~l~~~~g~~V---LDlgaG~G~~t~~la~~~~~~~~v~avD~~--~~~l~~~~~~~~~~g~~~v~~~~~D~~~ 145 (274)
T 3ajd_A 71 SSMIPPIVLNPREDDFI---LDMCAAPGGKTTHLAQLMKNKGTIVAVEIS--KTRTKALKSNINRMGVLNTIIINADMRK 145 (274)
T ss_dssp GGGHHHHHHCCCTTCEE---EETTCTTCHHHHHHHHHTTTCSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEESCHHH
T ss_pred HHHHHHHHhCCCCcCEE---EEeCCCccHHHHHHHHHcCCCCEEEEECCC--HHHHHHHHHHHHHhCCCcEEEEeCChHh
Confidence 34455556666666666 9999999999999998 34 688885544 344432 22234 36788888877
Q ss_pred CCC----CCCcccEEEEccccccc---C------C------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHH
Q 047630 292 LPF----FDNTLDIVHSMHVLSNW---I------P------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352 (392)
Q Consensus 292 Lpf----~d~sFDlV~s~~~l~~~---~------~------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ 352 (392)
++. .+++||+|++....... . . ......++.++.++|||||++++.......++..+.+..
T Consensus 146 ~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~ 225 (274)
T 3ajd_A 146 YKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKY 225 (274)
T ss_dssp HHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHH
T ss_pred cchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHH
Confidence 654 26789999987322110 0 0 022357999999999999999998754433333455666
Q ss_pred HHHH-cCCeEEE
Q 047630 353 LIES-VGFNKLK 363 (392)
Q Consensus 353 ll~~-aGf~~i~ 363 (392)
.+++ .+|+.+.
T Consensus 226 ~l~~~~~~~~~~ 237 (274)
T 3ajd_A 226 ILQKRNDVELII 237 (274)
T ss_dssp HHHHCSSEEEEC
T ss_pred HHHhCCCcEEec
Confidence 6655 3565544
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-09 Score=102.32 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=65.8
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHHHHHhc-----------------CCccEEEe
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNNFIASR-----------------GVVPLYIS 287 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~~aa~r-----------------g~i~~~~~ 287 (392)
.+.+.++.+| ||+|||+|.++..+++. + ..++++| ++....+.+.++ ..+.+..+
T Consensus 100 ~l~~~~g~~V---LDiG~G~G~~~~~la~~~g~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 100 MMDINPGDTV---LEAGSGSGGMSLFLSKAVGSQGRVISFE--VRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHTCCTTCEE---EEECCTTSHHHHHHHHHHCTTCEEEEEE--SSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred hcCCCCCCEE---EEeCCCcCHHHHHHHHHhCCCceEEEEe--CCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 3445565555 99999999999999986 5 6788855 434444322221 24788889
Q ss_pred ccCcC--CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 288 ISQRL--PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 288 d~~~L--pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+..+ ++++++||+|++...- . . .++.++.++|||||.|++..
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~~~-~----~---~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDMLN-P----H---VTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp CTTCCC-------EEEEEECSSS-T----T---TTHHHHGGGEEEEEEEEEEE
T ss_pred ChHHcccccCCCCeeEEEECCCC-H----H---HHHHHHHHhcCCCcEEEEEe
Confidence 98776 5667889999985432 2 1 27899999999999998765
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.5e-09 Score=96.85 Aligned_cols=108 Identities=13% Similarity=0.104 Sum_probs=74.7
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQR 291 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~ 291 (392)
..++..+....++.+| ||+|||+|..+..+++. +..++++|++. ...+.+. +.+ .+.++.+|+..
T Consensus 58 ~~~l~~l~~~~~~~~v---LdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 132 (229)
T 2avd_A 58 AQLLANLARLIQAKKA---LDLGTFTGYSALALALALPADGRVVTCEVDA--QPPELGRPLWRQAEAEHKIDLRLKPALE 132 (229)
T ss_dssp HHHHHHHHHHTTCCEE---EEECCTTSHHHHHHHTTSCTTCEEEEEESCS--HHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCEE---EEEcCCccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence 3355555556555555 99999999999999984 56888865543 4443322 223 36788887644
Q ss_pred C-C-CCC----CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 292 L-P-FFD----NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 292 L-p-f~d----~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
. + +.+ ++||+|++.... .....+++++.++|||||++++++..
T Consensus 133 ~~~~~~~~~~~~~~D~v~~d~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 133 TLDELLAAGEAGTFDVAVVDADK------ENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCS------TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred HHHHHHhcCCCCCccEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 3 1 111 689999986542 33457899999999999999998754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.85 E-value=5.6e-08 Score=87.31 Aligned_cols=116 Identities=8% Similarity=0.133 Sum_probs=78.6
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc----C-CccEEEeccCcCCCCCCcccEEEEcccccccC
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
.|||+|||+|.++..+++.+. .++++| ++....+.+.++ + .+.++++|+..++ ++||+|+++..++.+.
T Consensus 52 ~vlD~g~G~G~~~~~l~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 52 VVADLGAGTGVLSYGALLLGAKEVICVE--VDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQR 126 (207)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSSS
T ss_pred EEEEeeCCCCHHHHHHHHcCCCEEEEEE--CCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcccc
Confidence 349999999999999999865 688855 433444433332 2 3678889988875 4899999998876653
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
. .....+++++.+++ ||.+++. .. .....+.+.+.+++.||+.....
T Consensus 127 ~-~~~~~~l~~~~~~l--~~~~~~~-~~--~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 127 K-HADRPFLLKAFEIS--DVVYSIH-LA--KPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp T-TTTHHHHHHHHHHC--SEEEEEE-EC--CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred C-CchHHHHHHHHHhc--CcEEEEE-eC--CcCCHHHHHHHHHHCCCeEEEEE
Confidence 3 33356889999998 5544333 11 12223446778889998765433
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.6e-09 Score=98.03 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=68.0
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-C-------CEEEEEecCCCchhHHHHHh-----------cCCccEEEeccCc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-N-------ITIVTTSMNLNGPFNNFIAS-----------RGVVPLYISISQR 291 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g-------~~vvg~~iD~~a~~~~~aa~-----------rg~i~~~~~d~~~ 291 (392)
+.++.+| ||||||+|.++..+++. + ..++++| ++....+.+.+ ...+.+..+|...
T Consensus 82 ~~~~~~V---LdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 156 (227)
T 1r18_A 82 LKPGARI---LDVGSGSGYLTACFYRYIKAKGVDADTRIVGIE--HQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK 156 (227)
T ss_dssp CCTTCEE---EEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEE--SCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG
T ss_pred CCCCCEE---EEECCCccHHHHHHHHhcccccCCccCEEEEEE--cCHHHHHHHHHHHHhcCccccCCCceEEEECCccc
Confidence 3444455 99999999999999883 3 4888855 43344432221 1246788888776
Q ss_pred CCCCC-CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 292 LPFFD-NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 292 Lpf~d-~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
++++ ++||+|++..+++++ +.++.++|||||++++...
T Consensus 157 -~~~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 157 -GYPPNAPYNAIHVGAAAPDT---------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp -CCGGGCSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred -CCCcCCCccEEEECCchHHH---------HHHHHHHhcCCCEEEEEEe
Confidence 4444 789999999988764 3788999999999998853
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=99.17 Aligned_cols=124 Identities=12% Similarity=0.118 Sum_probs=77.7
Q ss_pred cEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh----------cCCccEEEeccCc-CCCCCCcccEEEE
Q 047630 238 RIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQR-LPFFDNTLDIVHS 304 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~-Lpf~d~sFDlV~s 304 (392)
+.|||||||+|.++..+++.. ..++++|+| ....+.+.+ ...+.++.+|+.. ++..+++||+|++
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid--~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 97 RKVLIIGGGDGGVLREVVKHPSVESVVQCEID--EDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CEEEEECCCchHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 455999999999999999864 578885544 444443222 1236788888765 4445788999998
Q ss_pred cccccccCCch--hHHHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEEE
Q 047630 305 MHVLSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 305 ~~~l~~~~~~~--~l~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
.... ++.+.. ....+++++.++|||||+|++..... ...+....+.+.+++. |..+...
T Consensus 175 d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~ 236 (304)
T 2o07_A 175 DSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAYA 236 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHh-CCCceeE
Confidence 6543 222211 12468999999999999999876321 1222333455555555 6655443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=98.87 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=82.7
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcC---CccEEEeccCcCCCCCCcccEEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s 304 (392)
.++.++ ||+|||+|.++.. ++.+..|+++|++ ....+ .+..++ .+.++.+|+..+. ++||+|++
T Consensus 194 ~~~~~V---LDlg~G~G~~~l~-a~~~~~V~~vD~s--~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~ 264 (336)
T 2yx1_A 194 SLNDVV---VDMFAGVGPFSIA-CKNAKKIYAIDIN--PHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIM 264 (336)
T ss_dssp CTTCEE---EETTCTTSHHHHH-TTTSSEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEE
T ss_pred CCCCEE---EEccCccCHHHHh-ccCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEE
Confidence 344555 9999999999999 8877789885544 33333 233333 3678899988765 78999998
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHc-CCeEEEEEEeec
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESV-GFNKLKWVVGRK 369 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~a-Gf~~i~w~~~~k 369 (392)
...... ..++.++.++|+|||.+++..+.... +...+.++++ |++.+....+..
T Consensus 265 dpP~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~----~~~~~~l~~~~~~~i~~~~~v~~ 319 (336)
T 2yx1_A 265 NLPKFA-------HKFIDKALDIVEEGGVIHYYTIGKDF----DKAIKLFEKKCDCEVLEKRIVKS 319 (336)
T ss_dssp CCTTTG-------GGGHHHHHHHEEEEEEEEEEEEESSS----HHHHHHHHHHSEEEEEEEEEEEE
T ss_pred CCcHhH-------HHHHHHHHHHcCCCCEEEEEEeecCc----hHHHHHHHHhcCCcEEEEEEEec
Confidence 643211 25889999999999999988776652 2345566666 777766665543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.1e-08 Score=94.95 Aligned_cols=117 Identities=10% Similarity=0.143 Sum_probs=82.3
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHH----HHHhcC---CccEEEeccCcCCCCCCcccEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
.++..| ||+|||+|.++..+++.+ ..|+++|+|. ...+ ++..++ .+.++.+|+..++ ..+.||.|+
T Consensus 124 ~~g~~V---lD~~aG~G~~~i~~a~~g~~~V~avD~np--~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi 197 (278)
T 3k6r_A 124 KPDELV---VDMFAGIGHLSLPIAVYGKAKVIAIEKDP--YTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRIL 197 (278)
T ss_dssp CTTCEE---EETTCTTTTTTHHHHHHTCCEEEEECCCH--HHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEE
T ss_pred CCCCEE---EEecCcCcHHHHHHHHhcCCeEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEE
Confidence 445555 999999999999999877 5888855443 3333 334444 3678888988876 467899999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc---cchHHHHHHHHHHcCCeE
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---AQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---~~l~~~l~~ll~~aGf~~ 361 (392)
+...... ..++..+.++||+||++.+..+.... ....+.+.+..++.|++.
T Consensus 198 ~~~p~~~-------~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 198 MGYVVRT-------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp ECCCSSG-------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred ECCCCcH-------HHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence 7654321 24778888999999999776654332 223456778888999875
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-08 Score=93.45 Aligned_cols=123 Identities=13% Similarity=0.111 Sum_probs=80.0
Q ss_pred cEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHh----------cCCccEEEeccCc-CCCCCCcccEEEE
Q 047630 238 RIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQR-LPFFDNTLDIVHS 304 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~-Lpf~d~sFDlV~s 304 (392)
+.|||||||+|.++..+++. + ..++++|+| ....+.+.+ ...+.++.+|+.. ++..+++||+|++
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid--~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 77 EHVLVVGGGDGGVIREILKHPSVKKATLVDID--GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp CEEEEESCTTCHHHHHHTTCTTCSEEEEEESC--HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CEEEEECCchHHHHHHHHhCCCCceEEEEECC--HHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 44599999999999999986 3 578885554 344433222 1236788888665 3445688999999
Q ss_pred cccccccCCchh--HHHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEE
Q 047630 305 MHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 305 ~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.... ++.+... ...+++++.++|||||++++..... ...+....+.+.+++. |..+..
T Consensus 155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~ 215 (275)
T 1iy9_A 155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKL 215 (275)
T ss_dssp SCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeEE
Confidence 6543 3222211 1468999999999999998874321 1122234455667776 665543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=100.45 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=85.3
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC----CccEEEeccCcC-CC---CCCc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG----VVPLYISISQRL-PF---FDNT 298 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg----~i~~~~~d~~~L-pf---~d~s 298 (392)
.++.+| ||+|||+|.++..+++.+. .|+++|++. .+.+ .+..++ .+.++++|+.++ +. ..++
T Consensus 211 ~~~~~V---LDl~cGtG~~sl~la~~ga~~V~~vD~s~--~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~ 285 (385)
T 2b78_A 211 AAGKTV---LNLFSYTAAFSVAAAMGGAMATTSVDLAK--RSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 285 (385)
T ss_dssp TBTCEE---EEETCTTTHHHHHHHHTTBSEEEEEESCT--THHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCeE---EEEeeccCHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCC
Confidence 344445 9999999999999999775 799966655 3333 333333 367888887652 21 2458
Q ss_pred ccEEEEccccc-----cc-CCchhHHHHHHHHHHcccCCcEEEEEeecccc--cchHHHHHHHHHHcCCeEEEE
Q 047630 299 LDIVHSMHVLS-----NW-IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG--AQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 299 FDlV~s~~~l~-----~~-~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~--~~l~~~l~~ll~~aGf~~i~w 364 (392)
||+|++..... .. ........++.++.++|+|||++++....... +...+.+.+.+.++|.+.+..
T Consensus 286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~ 359 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 359 (385)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 99999864432 11 11134456788899999999999988754332 334555667778888884443
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=94.04 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=77.3
Q ss_pred EEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCC--
Q 047630 239 IGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP-- 313 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~-- 313 (392)
.|||+|||+|.++..++++ +..++|+|+|..+ .+.+ ..+.++++|....+ .++.||+|+++-.+.....
T Consensus 42 ~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~--~~~a---~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~ 115 (421)
T 2ih2_A 42 RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKA--LDLP---PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEAS 115 (421)
T ss_dssp EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTT--CCCC---TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTT
T ss_pred EEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHH--HHhC---CCCcEEeCChhhcC-ccCCCCEEEECcCccCccccc
Confidence 4599999999999999983 5789997766522 2211 23678888887765 3568999999754432211
Q ss_pred -------chh-----------------HHHHHHHHHHcccCCcEEEEEeeccc-ccchHHHHHHHHHHcCC
Q 047630 314 -------TTL-----------------LHFLMFDIYRVLRPGGLFWLDHFFCV-GAQLEDVYVPLIESVGF 359 (392)
Q Consensus 314 -------~~~-----------------l~~~L~el~RvLKPGG~lii~~~~~~-~~~l~~~l~~ll~~aGf 359 (392)
.+. ...+++.+.++|+|||++++...... .....+.+++.+.+.|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 116 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK 186 (421)
T ss_dssp TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence 111 12578999999999999977754321 11122447778877776
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-08 Score=97.76 Aligned_cols=124 Identities=14% Similarity=0.079 Sum_probs=76.2
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----------cCCccEEEeccCc-CCCCCCcccEEEE
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQR-LPFFDNTLDIVHS 304 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~-Lpf~d~sFDlV~s 304 (392)
..|||||||+|.++..+++. ...++++|+| ....+.+.+ ...+.++++|+.. ++..+++||+|++
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid--~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVD--GLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEEEESC--HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCCEEEEEECC--HHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 34599999999999999986 3578885554 344332222 1236788888655 3445678999998
Q ss_pred cccccccCCch--hHHHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEE
Q 047630 305 MHVLSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 305 ~~~l~~~~~~~--~l~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
...-....+.. ....+++++.++|||||+|++..... ...+....+.+.+++. |..+..
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~ 231 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRV 231 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCceEE
Confidence 53321011111 11578999999999999999874221 1122233355556665 665543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=93.87 Aligned_cols=108 Identities=10% Similarity=0.022 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHH----HhcCC---ccEEEeccC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFI----ASRGV---VPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~a----a~rg~---i~~~~~d~~ 290 (392)
...++..++...+..+| ||||||+|..+..+++. +..++++|+| ....+.+ .+.+. +.++++|+.
T Consensus 58 ~~~~l~~l~~~~~~~~V---LeiG~G~G~~~~~la~~~~~~~~v~~iD~~--~~~~~~a~~~~~~~g~~~~i~~~~gda~ 132 (237)
T 3c3y_A 58 AGQLMSFVLKLVNAKKT---IEVGVFTGYSLLLTALSIPDDGKITAIDFD--REAYEIGLPFIRKAGVEHKINFIESDAM 132 (237)
T ss_dssp HHHHHHHHHHHTTCCEE---EEECCTTSHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHhhCCCEE---EEeCCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 34456666655555555 99999999999999985 6788885544 3444322 22342 678888865
Q ss_pred cC-C-C-----CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 291 RL-P-F-----FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 291 ~L-p-f-----~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.. + + .+++||+|++... ......+++++.++|||||++++++.
T Consensus 133 ~~l~~l~~~~~~~~~fD~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 133 LALDNLLQGQESEGSYDFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp HHHHHHHHSTTCTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred HHHHHHHhccCCCCCcCEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 43 2 1 2578999997643 23456799999999999999999874
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.6e-08 Score=101.36 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhC--CCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHH----HhcC--CccEEEecc
Q 047630 221 LDFSIDEVLATK--KPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFI----ASRG--VVPLYISIS 289 (392)
Q Consensus 221 ~~~lI~~ll~l~--~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~a----a~rg--~i~~~~~d~ 289 (392)
...++..++... ++.+| ||+|||+|..+..+++. +..|++ +|++......+ .+.| .+.++++|.
T Consensus 103 ~s~l~~~~L~~~~~~g~~V---LDl~aGpG~kt~~lA~~~~~~g~V~a--vDis~~~l~~~~~n~~r~g~~nv~~~~~D~ 177 (479)
T 2frx_A 103 SSMLPVAALFADGNAPQRV---MDVAAAPGSKTTQISARMNNEGAILA--NEFSASRVKVLHANISRCGISNVALTHFDG 177 (479)
T ss_dssp HHHHHHHHHTTTTCCCSEE---EESSCTTSHHHHHHHHHTTTCSEEEE--ECSSHHHHHHHHHHHHHHTCCSEEEECCCS
T ss_pred HHHHHHHHhCcccCCCCEE---EEeCCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEeCCH
Confidence 445555666655 65566 99999999999999984 357888 55544544432 2224 267788888
Q ss_pred CcCCC-CCCcccEEEEcc------cccc-------cCCc------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 290 QRLPF-FDNTLDIVHSMH------VLSN-------WIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 290 ~~Lpf-~d~sFDlV~s~~------~l~~-------~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
..++. .+++||.|++.- .+.. |.+. .....+|.++.++|||||+|+++......++.++.
T Consensus 178 ~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~v 257 (479)
T 2frx_A 178 RVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAV 257 (479)
T ss_dssp TTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHH
T ss_pred HHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHH
Confidence 87764 567899999831 1211 1100 11246899999999999999998754434444455
Q ss_pred HHHHHHHcC
Q 047630 350 YVPLIESVG 358 (392)
Q Consensus 350 l~~ll~~aG 358 (392)
+..++++.+
T Consensus 258 v~~~l~~~~ 266 (479)
T 2frx_A 258 CLWLKETYP 266 (479)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHHCC
Confidence 677777765
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-08 Score=97.73 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=75.0
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----------CCccEEEeccCc-CCCCCCcccEEEE
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQR-LPFFDNTLDIVHS 304 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~-Lpf~d~sFDlV~s 304 (392)
+.|||||||+|..+..+++. ...+++ +|++....+.+.++ ..+.++.+|+.. ++..+++||+|++
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHESVEKVTM--CEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCTTCCEEEE--ECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 44599999999999999986 357877 55544444433322 136777888655 3335688999998
Q ss_pred cccccccCCchhH--HHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEE
Q 047630 305 MHVLSNWIPTTLL--HFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 305 ~~~l~~~~~~~~l--~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
... .++.+...+ ..+++++.++|||||++++..-.. ...+....+.+.+++. |..+..
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~ 248 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTY 248 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEE
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCcceE
Confidence 653 333333322 578999999999999999875211 1122233355556665 665543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=96.47 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhC---CCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHH----HhcCC---ccEEEecc
Q 047630 221 LDFSIDEVLATK---KPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFI----ASRGV---VPLYISIS 289 (392)
Q Consensus 221 ~~~lI~~ll~l~---~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~a----a~rg~---i~~~~~d~ 289 (392)
.+.+++.++... ++.+| ||+|||+|.++..+++. +..++++|++ ....+.+ ...+. +.++++|.
T Consensus 108 te~lv~~~l~~~~~~~~~~v---LDlG~GsG~~~~~la~~~~~~v~~vDis--~~al~~A~~n~~~~~l~~~v~~~~~D~ 182 (284)
T 1nv8_A 108 TEELVELALELIRKYGIKTV---ADIGTGSGAIGVSVAKFSDAIVFATDVS--SKAVEIARKNAERHGVSDRFFVRKGEF 182 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEE---EEESCTTSHHHHHHHHHSSCEEEEEESC--HHHHHHHHHHHHHTTCTTSEEEEESST
T ss_pred HHHHHHHHHHHhcccCCCEE---EEEeCchhHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCceEEEECcc
Confidence 566666665432 33444 99999999999999987 7788885544 3444322 22332 78888887
Q ss_pred CcCCCCCCcc---cEEEEccccccc----------CCch------hHHHHHHHHH-HcccCCcEEEEEeec
Q 047630 290 QRLPFFDNTL---DIVHSMHVLSNW----------IPTT------LLHFLMFDIY-RVLRPGGLFWLDHFF 340 (392)
Q Consensus 290 ~~Lpf~d~sF---DlV~s~~~l~~~----------~~~~------~l~~~L~el~-RvLKPGG~lii~~~~ 340 (392)
... ++ ++| |+|+++...... .+.. +-..+++++. +.|+|||++++..-.
T Consensus 183 ~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 183 LEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp TGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred hhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 762 22 579 999998333211 1111 0115899999 999999999986533
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-08 Score=96.13 Aligned_cols=97 Identities=19% Similarity=0.126 Sum_probs=67.6
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----------CCccEEEeccCcC--CCCCCcccEEE
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQRL--PFFDNTLDIVH 303 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~L--pf~d~sFDlV~ 303 (392)
+.|||||||+|.++..+++. ...++++|+| ....+.+.++ ..+.++++|+..+ .+.+++||+|+
T Consensus 122 ~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis--~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 122 KKVLVIGGGDGGVLREVARHASIEQIDMCEID--KMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CEEEEETCSSSHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CEEEEECCCccHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 45599999999999999986 4578885544 3444332221 2378888887653 23467899999
Q ss_pred EcccccccCCchh--HHHHHHHHHHcccCCcEEEEE
Q 047630 304 SMHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 304 s~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~ 337 (392)
+...- ++..... ...+++++.|+|||||+|++.
T Consensus 200 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 200 VDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp ECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 86432 1121121 357999999999999999996
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=92.57 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=78.5
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----------CCccEEEeccCc-CCCCCCcccEEEE
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQR-LPFFDNTLDIVHS 304 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~-Lpf~d~sFDlV~s 304 (392)
..|||||||+|.++..+++. +..++++|+| ....+.+.++ ..+.++++|... ++..+++||+|++
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis--~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSVENIDICEID--ETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 34599999999999999986 4678885544 3444433321 236788888655 3334678999998
Q ss_pred cccccccCCchhH--HHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEE
Q 047630 305 MHVLSNWIPTTLL--HFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 305 ~~~l~~~~~~~~l--~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
... .++.+...+ +.+++++.++|||||++++..... ...+....+.+.+++. |..++.
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~ 256 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEY 256 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCeEE
Confidence 643 222222222 579999999999999999875321 1112223355556665 555543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.8e-08 Score=97.70 Aligned_cols=127 Identities=9% Similarity=-0.018 Sum_probs=84.3
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHH----HHHhcCC----ccEEEeccCcCCC----CC
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNN----FIASRGV----VPLYISISQRLPF----FD 296 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~----~aa~rg~----i~~~~~d~~~Lpf----~d 296 (392)
.+.++.+| ||+|||+|.++..+++.+ ..|+++|++ ....+ .+..++. +.++.+|+..+.. .+
T Consensus 217 ~~~~~~~V---LDl~cG~G~~sl~la~~g~~~V~~vD~s--~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~ 291 (396)
T 3c0k_A 217 RYVENKRV---LNCFSYTGGFAVSALMGGCSQVVSVDTS--QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRG 291 (396)
T ss_dssp HHCTTCEE---EEESCTTCSHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTT
T ss_pred HhhCCCeE---EEeeccCCHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcC
Confidence 34455555 999999999999999986 478885544 34433 2333332 5688888766421 14
Q ss_pred CcccEEEEcccccc------cCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--chHHHHHHHHHHcCCeE
Q 047630 297 NTLDIVHSMHVLSN------WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--QLEDVYVPLIESVGFNK 361 (392)
Q Consensus 297 ~sFDlV~s~~~l~~------~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--~l~~~l~~ll~~aGf~~ 361 (392)
++||+|++...... .........++.++.+.|+|||++++........ ...+.+.+.+.++|++.
T Consensus 292 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 364 (396)
T 3c0k_A 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV 364 (396)
T ss_dssp CCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred CCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence 68999999743311 0111456689999999999999999886543322 34555666778888543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-08 Score=95.72 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=80.2
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh-----------cCCccEEEeccCc-CCCCCCcccEEE
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS-----------RGVVPLYISISQR-LPFFDNTLDIVH 303 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~-----------rg~i~~~~~d~~~-Lpf~d~sFDlV~ 303 (392)
+.|||||||+|.++..+++. +..++++|+| ....+.+.+ ...+.++++|+.. ++..+++||+|+
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid--~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHPTVEKAVMVDID--GELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTSTTCCEEEEEESC--HHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CeEEEEcCCcCHHHHHHHhcCCCCEEEEEECC--HHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 34599999999999999986 4578885554 344332221 1246788888765 344578899999
Q ss_pred Eccccccc--CCchh--HHHHHHHHHHcccCCcEEEEEeecc--cccchHHHHHHHHHHcCCeEEEE
Q 047630 304 SMHVLSNW--IPTTL--LHFLMFDIYRVLRPGGLFWLDHFFC--VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 304 s~~~l~~~--~~~~~--l~~~L~el~RvLKPGG~lii~~~~~--~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
+....+.. .+... ...+++++.++|||||+|++..... ...+....+.+.+++. |..+..
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~ 222 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRS 222 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCceEE
Confidence 97654320 11111 2579999999999999998874321 1223344466667776 655543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.5e-08 Score=93.03 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=79.1
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----------CCccEEEeccCcC-CCCCCcccEEEE
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQRL-PFFDNTLDIVHS 304 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~L-pf~d~sFDlV~s 304 (392)
+.|||||||+|..+..+++. ...++++|+| ....+.+.++ ..+.++++|.... +..+++||+|++
T Consensus 80 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid--~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 80 KNVLVVGGGDGGIIRELCKYKSVENIDICEID--ETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CeEEEEeCCcCHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 45599999999999999986 3578885544 3444433322 2367888886653 333678999998
Q ss_pred cccccccCCchhH--HHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEE
Q 047630 305 MHVLSNWIPTTLL--HFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 305 ~~~l~~~~~~~~l--~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.... ++.+...+ ..+++++.++|||||++++..... ...+....+.+.+++. |..+..
T Consensus 158 d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~ 218 (283)
T 2i7c_A 158 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEY 218 (283)
T ss_dssp ECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred cCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCceEE
Confidence 6433 32333333 579999999999999999874311 1122223345556655 666543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-08 Score=94.69 Aligned_cols=90 Identities=13% Similarity=0.238 Sum_probs=61.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.|||||||+|.++..+++.+..++++|+| ..+.+.+.++ + .+.++.+|+..++++ +||+|+++..++.
T Consensus 31 ~VLDiG~G~G~lt~~L~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlpy~~- 105 (285)
T 1zq9_A 31 VVLEVGPGTGNMTVKLLEKAKKVVACELD--PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLPYQI- 105 (285)
T ss_dssp EEEEECCTTSTTHHHHHHHSSEEEEEESC--HHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECCGGG-
T ss_pred EEEEEcCcccHHHHHHHhhCCEEEEEECC--HHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecCccc-
Confidence 34999999999999999999999995544 4444433322 2 367889999888765 7999999765532
Q ss_pred CCchhHHHHH--------------HHH--HHcccCCcEE
Q 047630 312 IPTTLLHFLM--------------FDI--YRVLRPGGLF 334 (392)
Q Consensus 312 ~~~~~l~~~L--------------~el--~RvLKPGG~l 334 (392)
.. ..+..++ +|+ .++|||||.+
T Consensus 106 ~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 106 SS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp HH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred ch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 11 1111222 333 3799999987
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=91.57 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=77.2
Q ss_pred cEEEEEcCCcchHHHHHHHcC-------CEEEEEecCCCchhHHHH----HhcC-CccEEEeccCcCCCCCCcccEEEEc
Q 047630 238 RIGLDIGGGVATFAVRMMERN-------ITIVTTSMNLNGPFNNFI----ASRG-VVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g-------~~vvg~~iD~~a~~~~~a----a~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.+|||+|||+|.++..+++.. ..++|+|+| ......+ ...| .+.+..+|... +...+.||+|+++
T Consensus 132 ~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~--~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 132 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVD--DLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISD 208 (344)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESC--HHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEE
T ss_pred CEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECC--HHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEEC
Confidence 445999999999999888742 567775544 3333322 2233 25777888655 3346789999999
Q ss_pred ccccccCCch---------------hHHHHHHHHHHcccCCcEEEEEeeccc-ccchHHHHHHHHHHcCC
Q 047630 306 HVLSNWIPTT---------------LLHFLMFDIYRVLRPGGLFWLDHFFCV-GAQLEDVYVPLIESVGF 359 (392)
Q Consensus 306 ~~l~~~~~~~---------------~l~~~L~el~RvLKPGG~lii~~~~~~-~~~l~~~l~~ll~~aGf 359 (392)
..+.++...+ ....++.++.+.|||||++++...... .......+++.+.+.|+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH 278 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence 8875542221 112589999999999999987763211 11123457777777664
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=6.2e-08 Score=92.51 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=76.2
Q ss_pred cEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHhc----------------CCccEEEeccCcC-CCCCCcc
Q 047630 238 RIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIASR----------------GVVPLYISISQRL-PFFDNTL 299 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~r----------------g~i~~~~~d~~~L-pf~d~sF 299 (392)
..|||||||+|.++..+++.+ ..++++|+| ....+.+.++ ..+.++.+|+... +. +++|
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid--~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDVDEVIMVEID--EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCCSEEEEEESC--HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CeEEEEcCCcCHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 345999999999999999874 478885544 3444332221 2367788876542 33 6789
Q ss_pred cEEEEcccccccCCchhH--HHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEE
Q 047630 300 DIVHSMHVLSNWIPTTLL--HFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l--~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
|+|++.... ++.+...+ ..+++++.++|||||++++..... ...+....+.+.+++. |..+..
T Consensus 154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~ 219 (281)
T 1mjf_A 154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYY 219 (281)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEE
T ss_pred eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCceEE
Confidence 999986543 32222222 578999999999999998874321 1222233355555555 665544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4e-08 Score=97.82 Aligned_cols=120 Identities=11% Similarity=-0.027 Sum_probs=80.0
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCcCCC----CCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQRLPF----FDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~Lpf----~d~sFDlV~s~~~l 308 (392)
.|||+|||+|.++..+++.+..|+++|++ ....+. +..++. +.++++|+..+.. .+++||+|++....
T Consensus 212 ~VLDlg~G~G~~~~~la~~~~~v~~vD~s--~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 212 RALDVFSYAGGFALHLALGFREVVAVDSS--AEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp EEEEETCTTTHHHHHHHHHEEEEEEEESC--HHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred eEEEeeeccCHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 34999999999999999886678885543 344432 333342 6788888766422 25789999986433
Q ss_pred cccCC------chhHHHHHHHHHHcccCCcEEEEEeecccc--cchHHHHHHHHHHcCCe
Q 047630 309 SNWIP------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVG--AQLEDVYVPLIESVGFN 360 (392)
Q Consensus 309 ~~~~~------~~~l~~~L~el~RvLKPGG~lii~~~~~~~--~~l~~~l~~ll~~aGf~ 360 (392)
..... ......++.++.++|+|||++++....... +...+.+.+.+.+.|.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 349 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL 349 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 22111 134567899999999999999988754322 22345566677777743
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-07 Score=93.08 Aligned_cols=148 Identities=15% Similarity=0.135 Sum_probs=92.0
Q ss_pred HHHHHHHHHhh---CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCc
Q 047630 221 LDFSIDEVLAT---KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l---~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~ 291 (392)
.+.+++.++.. .++.+ |||+|||+|.++..+++.+..|+|+|++ ....+. +...+ .+.++.+|+..
T Consensus 271 ~e~l~~~~~~~l~~~~~~~---VLDlgcG~G~~~~~la~~~~~V~gvD~s--~~al~~A~~n~~~~~~~~v~f~~~d~~~ 345 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDR---VLDLFCGMGNFTLPLATQAASVVGVEGV--PALVEKGQQNARLNGLQNVTFYHENLEE 345 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCE---EEEESCTTTTTHHHHHTTSSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred HHHHHHHHHHhhcCCCCCE---EEECCCCCCHHHHHHHhhCCEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 45566665543 23344 4999999999999999998899995544 344332 22333 37889998776
Q ss_pred ----CCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 292 ----LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 292 ----Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+++.+++||+|++....... ..+++.+.+ ++|+++++++.- ...+.... ..+.+.||+..+....
T Consensus 346 ~l~~~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~~-~~p~~ivyvsc~---p~tlard~-~~l~~~Gy~~~~~~~~ 414 (433)
T 1uwv_A 346 DVTKQPWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYVSCN---PATLARDS-EALLKAGYTIARLAML 414 (433)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEEESC---HHHHHHHH-HHHHHTTCEEEEEEEE
T ss_pred HhhhhhhhcCCCCEEEECCCCccH------HHHHHHHHh-cCCCeEEEEECC---hHHHHhhH-HHHHHCCcEEEEEEEe
Confidence 45667899999986544322 235555543 789999888642 22333323 3556779998876655
Q ss_pred eccCCCCcccceeeEEEEEc
Q 047630 368 RKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 368 ~k~d~~~~~~e~ylsai~~K 387 (392)
.-.-. ...-|. .++++|
T Consensus 415 d~Fp~-t~HvE~--v~ll~r 431 (433)
T 1uwv_A 415 DMFPH-TGHLES--MVLFSR 431 (433)
T ss_dssp CCSTT-SSCCEE--EEEEEC
T ss_pred ccCCC-CCeEEE--EEEEEE
Confidence 43221 123343 356665
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-07 Score=93.27 Aligned_cols=123 Identities=16% Similarity=0.104 Sum_probs=80.0
Q ss_pred CCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcCC-ccEEEeccCcC-CCCCCcccEEEEccc
Q 047630 234 PGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRGV-VPLYISISQRL-PFFDNTLDIVHSMHV 307 (392)
Q Consensus 234 ~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg~-i~~~~~d~~~L-pf~d~sFDlV~s~~~ 307 (392)
+.+| ||+|||+|.++..+++.|..|+++|++ ..+.+. +..++. ..+.++|+..+ +...+.||+|++...
T Consensus 215 g~~V---LDlg~GtG~~sl~~a~~ga~V~avDis--~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 215 GERV---LDVYSYVGGFALRAARKGAYALAVDKD--LEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TCEE---EEESCTTTHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred CCeE---EEcccchhHHHHHHHHcCCeEEEEECC--HHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 5555 999999999999999999888885544 344432 333343 24667776653 222344999998744
Q ss_pred ccccCC------chhHHHHHHHHHHcccCCcEEEEEeeccc--ccchHHHHHHHHHHcCCeE
Q 047630 308 LSNWIP------TTLLHFLMFDIYRVLRPGGLFWLDHFFCV--GAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 308 l~~~~~------~~~l~~~L~el~RvLKPGG~lii~~~~~~--~~~l~~~l~~ll~~aGf~~ 361 (392)
...-.. ......++..+.++|||||+|++...... .+...+.+.+.+.++|.+.
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~ 351 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRL 351 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeE
Confidence 311000 12345789999999999999987765433 2334455667777777543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.63 E-value=6.5e-08 Score=96.66 Aligned_cols=122 Identities=11% Similarity=0.002 Sum_probs=80.3
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC---CccEEEeccCcCCC----CCCccc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRLPF----FDNTLD 300 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~Lpf----~d~sFD 300 (392)
++.+| ||+|||+|.++..+++.+. .|+++|++ ....+ .+..++ .+.++.+|+..+.. .+++||
T Consensus 217 ~~~~V---LDl~~G~G~~~~~la~~g~~~v~~vD~s--~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 217 PGDRV---LDVFTYTGGFAIHAAIAGADEVIGIDKS--PRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp TTCEE---EETTCTTTHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeE---EEecCCCCHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCC
Confidence 44445 9999999999999999865 88885544 33333 233334 36788888766422 257899
Q ss_pred EEEEcccccccCC------chhHHHHHHHHHHcccCCcEEEEEeecccc--cchHHHHHHHHHHcCC
Q 047630 301 IVHSMHVLSNWIP------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVG--AQLEDVYVPLIESVGF 359 (392)
Q Consensus 301 lV~s~~~l~~~~~------~~~l~~~L~el~RvLKPGG~lii~~~~~~~--~~l~~~l~~ll~~aGf 359 (392)
+|++......... ......++.++.++|||||++++....... +...+.+.+.+.+.|.
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~ 358 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGK 358 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTE
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 9998643321100 134567899999999999999888654322 2234445566666663
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.5e-08 Score=103.41 Aligned_cols=122 Identities=15% Similarity=0.065 Sum_probs=82.1
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhHH----HHHhcC----CccEEEeccCc-CCCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFNN----FIASRG----VVPLYISISQR-LPFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~~----~aa~rg----~i~~~~~d~~~-Lpf~d~sF 299 (392)
.+.++.+| ||+|||+|.++..++..|.. |+++|++ ....+ .+..++ .+.++++|+.. ++...++|
T Consensus 536 ~~~~g~~V---LDlg~GtG~~sl~aa~~ga~~V~aVD~s--~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~f 610 (703)
T 3v97_A 536 QMSKGKDF---LNLFSYTGSATVHAGLGGARSTTTVDMS--RTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQF 610 (703)
T ss_dssp HHCTTCEE---EEESCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCE
T ss_pred HhcCCCcE---EEeeechhHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCc
Confidence 34455556 99999999999999988764 8885544 34443 233333 26788888766 44456899
Q ss_pred cEEEEcccccc--------cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe
Q 047630 300 DIVHSMHVLSN--------WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN 360 (392)
Q Consensus 300 DlV~s~~~l~~--------~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~ 360 (392)
|+|++...... +........++.++.++|||||+|+++.-....... .+.+++.||+
T Consensus 611 D~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~----~~~l~~~g~~ 675 (703)
T 3v97_A 611 DLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD----LDGLAKLGLK 675 (703)
T ss_dssp EEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC----HHHHHHTTEE
T ss_pred cEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC----HHHHHHcCCc
Confidence 99998643211 111245667899999999999999988644322222 3467788866
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=91.76 Aligned_cols=74 Identities=15% Similarity=0.291 Sum_probs=49.5
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCcccEE
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+.+.++.+| ||||||+|.++..+++.+..++++| ++..+.+.+.+ .+ .+.++.+|+..+++. +||+|
T Consensus 38 ~~~~~~~~V---LDiG~G~G~lt~~La~~~~~v~~vD--i~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~V 110 (299)
T 2h1r_A 38 AKIKSSDIV---LEIGCGTGNLTVKLLPLAKKVITID--IDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVC 110 (299)
T ss_dssp HCCCTTCEE---EEECCTTSTTHHHHTTTSSEEEEEC--SCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEE
T ss_pred cCCCCcCEE---EEEcCcCcHHHHHHHhcCCEEEEEE--CCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEE
Confidence 334444445 9999999999999999988999955 54444443322 22 367888898887753 79999
Q ss_pred EEccccc
Q 047630 303 HSMHVLS 309 (392)
Q Consensus 303 ~s~~~l~ 309 (392)
+++..++
T Consensus 111 v~n~py~ 117 (299)
T 2h1r_A 111 TANIPYK 117 (299)
T ss_dssp EEECCGG
T ss_pred EEcCCcc
Confidence 9976653
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-08 Score=94.18 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=62.4
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCC-CcccEEEEcccccccCC
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFD-NTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d-~sFDlV~s~~~l~~~~~ 313 (392)
.|||+|||+|.++..+++.+..++| +|++..+.+.+.++ ..+.++++|+..+++++ ++| .|+++..++. .
T Consensus 32 ~VLDiG~G~G~~~~~l~~~~~~v~~--id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~--~ 106 (245)
T 1yub_A 32 TVYEIGTGKGHLTTKLAKISKQVTS--IELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHL--S 106 (245)
T ss_dssp EEEECSCCCSSCSHHHHHHSSEEEE--SSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCSSS--C
T ss_pred EEEEEeCCCCHHHHHHHHhCCeEEE--EECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCccc--c
Confidence 3499999999999999998888988 44533433322222 23678889999988774 688 6777643321 1
Q ss_pred chhHHH----------HH----HHHHHcccCCcEEEEE
Q 047630 314 TTLLHF----------LM----FDIYRVLRPGGLFWLD 337 (392)
Q Consensus 314 ~~~l~~----------~L----~el~RvLKPGG~lii~ 337 (392)
...+.. ++ +.+.|+|||||.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 107 TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 111111 33 6689999999987443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.3e-07 Score=86.85 Aligned_cols=135 Identities=9% Similarity=0.035 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhcCC-ccEEEeccCcCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASRGV-VPLYISISQRLP 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~rg~-i~~~~~d~~~Lp 293 (392)
.+.+...++...+ ....|||||||+|-++..++.. ...++++|+| ..+.+. +...|. ..+.+.|...-+
T Consensus 119 lD~fY~~i~~~i~--~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId--~~~le~a~~~l~~~g~~~~~~v~D~~~~~ 194 (281)
T 3lcv_B 119 LDEFYRELFRHLP--RPNTLRDLACGLNPLAAPWMGLPAETVYIASDID--ARLVGFVDEALTRLNVPHRTNVADLLEDR 194 (281)
T ss_dssp HHHHHHHHGGGSC--CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESB--HHHHHHHHHHHHHTTCCEEEEECCTTTSC
T ss_pred HHHHHHHHHhccC--CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCC--HHHHHHHHHHHHhcCCCceEEEeeecccC
Confidence 4444555555443 2445699999999999988874 4578885544 455543 333343 345555544433
Q ss_pred CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc---ccc----chHHHHHHHHHHcCCeEE
Q 047630 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC---VGA----QLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~---~~~----~l~~~l~~ll~~aGf~~i 362 (392)
+.+.||+|++.-++++..+ +.....+ ++.+.|+|+|+++-..... ... ...+.|.+.+.+.|...-
T Consensus 195 -p~~~~DvaL~lkti~~Le~-q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~ 267 (281)
T 3lcv_B 195 -LDEPADVTLLLKTLPCLET-QQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQ 267 (281)
T ss_dssp -CCSCCSEEEETTCHHHHHH-HSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEE
T ss_pred -CCCCcchHHHHHHHHHhhh-hhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCcee
Confidence 5678999999999988633 3323445 9999999999998776521 111 225556666777786433
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=90.02 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=72.3
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----------cCCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
+.|||||||+|..+..+++.+..+++ +|++....+.+.+ ...+.++.+|...+. ++||+|++..
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~v~~--veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 74 KEVLIVDGFDLELAHQLFKYDTHIDF--VQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CEEEEESSCCHHHHHHHTTSSCEEEE--ECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CEEEEEeCCcCHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 45699999999999999887556777 5553444332221 123677788877654 7899999862
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc-ccchHHHHHHHHHHcCCeEEEE
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-GAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~-~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.++. .+++++.++|||||++++...... .......+.+.+++. |..+..
T Consensus 148 ----~dp~---~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~ 197 (262)
T 2cmg_A 148 ----EPDI---HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMP 197 (262)
T ss_dssp ----CCCH---HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred ----CChH---HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEE
Confidence 2222 389999999999999988642211 111222344445554 665543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.2e-07 Score=91.36 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHH----HhcCC-ccEEEeccCcCCCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFI----ASRGV-VPLYISISQRLPFF 295 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~a----a~rg~-i~~~~~d~~~Lpf~ 295 (392)
.+.+++.++.+.++.++ ||+|||+|.++..+++.+..|+++|++ ..+.+.+ ..++. +.++.+|+.++..
T Consensus 278 ~e~l~~~~~~~~~~~~V---LDlgcG~G~~sl~la~~~~~V~gvD~s--~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~- 351 (425)
T 2jjq_A 278 AVNLVRKVSELVEGEKI---LDMYSGVGTFGIYLAKRGFNVKGFDSN--EFAIEMARRNVEINNVDAEFEVASDREVSV- 351 (425)
T ss_dssp HHHHHHHHHHHCCSSEE---EEETCTTTHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHHTCCEEEEECCTTTCCC-
T ss_pred HHHHHHHhhccCCCCEE---EEeeccchHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHcCCcEEEEECChHHcCc-
Confidence 44555655554444455 999999999999999998899995544 3444322 22333 6788999888743
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+ +||+|++....... . +.+++.+. .|+|||+++++.
T Consensus 352 ~-~fD~Vv~dPPr~g~---~--~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 352 K-GFDTVIVDPPRAGL---H--PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp T-TCSEEEECCCTTCS---C--HHHHHHHH-HHCCSEEEEEES
T ss_pred c-CCCEEEEcCCccch---H--HHHHHHHH-hcCCCcEEEEEC
Confidence 2 89999986543221 1 13555554 599999999874
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-07 Score=90.13 Aligned_cols=75 Identities=8% Similarity=0.133 Sum_probs=57.7
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cCCccEEEeccCcCCCCCCcccEEEEc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RGVVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.+.++.+| ||||||+|.++..+++.+..|+++|+|. ...+.+.+ .+.+.++++|+..+++++..||.|+++
T Consensus 47 ~~~~~~~V---LEIG~G~G~lT~~La~~~~~V~aVEid~--~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~N 121 (295)
T 3gru_A 47 NLTKDDVV---LEIGLGKGILTEELAKNAKKVYVIEIDK--SLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVAN 121 (295)
T ss_dssp TCCTTCEE---EEECCTTSHHHHHHHHHSSEEEEEESCG--GGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEE
T ss_pred CCCCcCEE---EEECCCchHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEe
Confidence 34444555 9999999999999999999999966554 44443332 245789999999999888889999988
Q ss_pred cccc
Q 047630 306 HVLS 309 (392)
Q Consensus 306 ~~l~ 309 (392)
..++
T Consensus 122 lPy~ 125 (295)
T 3gru_A 122 LPYQ 125 (295)
T ss_dssp CCGG
T ss_pred Cccc
Confidence 6653
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.5e-07 Score=86.98 Aligned_cols=140 Identities=11% Similarity=0.042 Sum_probs=82.0
Q ss_pred EEEEEcCCcchHHHHHHHc-CC-EEEEEecCCCchhHHHH-HhcC-CccEEEeccCcCCCCCCcccEEEEccccc---cc
Q 047630 239 IGLDIGGGVATFAVRMMER-NI-TIVTTSMNLNGPFNNFI-ASRG-VVPLYISISQRLPFFDNTLDIVHSMHVLS---NW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~-~vvg~~iD~~a~~~~~a-a~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~---~~ 311 (392)
+|||+|||+|.++..++++ ++ .+.++++..+-+..... ...+ .+..+..+++...+.++.||+|+|..+.+ ++
T Consensus 77 ~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~ 156 (277)
T 3evf_A 77 RVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSV 156 (277)
T ss_dssp EEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCCSCHH
T ss_pred EEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccCcCchH
Confidence 4599999999999988875 43 34553333211100000 0011 12334555555667788999999987664 22
Q ss_pred CCchhHHHHHHHHHHcccCC-cEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPG-GLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSA 383 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPG-G~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsa 383 (392)
.+......+|..+.++|||| |.|++..|..-.++..+ +.+.+++. |+.+....- . .-....|.|+.+
T Consensus 157 ~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~-l~~~lk~~-F~~V~~~KP-a--SR~~S~E~Y~V~ 224 (277)
T 3evf_A 157 TEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLE-KLELLQRR-FGGTVIRNP-L--SRNSTHEMYYVS 224 (277)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHH-HHHHHHHH-HCCEEECCT-T--SCTTCCCEEEES
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHH-HHHHHHHh-cCCEEEEeC-C--CCCCCCceEEEE
Confidence 23323234678889999999 99999655522344433 44555554 777766533 1 113456788743
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-07 Score=87.25 Aligned_cols=83 Identities=10% Similarity=0.189 Sum_probs=54.4
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCC-C
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFD-N 297 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d-~ 297 (392)
.+++.++.......-..|||||||+|.++..+++++..+++ +|++..+.+.+.++ +.+.++.+|+..+++++ .
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTA--IEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEE--ECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEE--EECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 34455544322112233499999999999999999989988 55544555544432 34788999999998874 4
Q ss_pred cccEEEEcccc
Q 047630 298 TLDIVHSMHVL 308 (392)
Q Consensus 298 sFDlV~s~~~l 308 (392)
.| .|+++..+
T Consensus 95 ~~-~vv~nlPy 104 (244)
T 1qam_A 95 SY-KIFGNIPY 104 (244)
T ss_dssp CC-EEEEECCG
T ss_pred Ce-EEEEeCCc
Confidence 55 45555443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=6.2e-07 Score=84.10 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=73.2
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcCC-ccEEEeccCcCCCCC
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRGV-VPLYISISQRLPFFD 296 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg~-i~~~~~d~~~Lpf~d 296 (392)
+.+...++...+ ...|||||||+|.++..+. .+..++++|+| +.+.+.+. ..+. ..+.+.|...-+.+.
T Consensus 94 d~fY~~i~~~~~---p~~VLDlGCG~gpLal~~~-~~~~y~a~DId--~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~ 167 (253)
T 3frh_A 94 DTLYDFIFSAET---PRRVLDIACGLNPLALYER-GIASVWGCDIH--QGLGDVITPFAREKDWDFTFALQDVLCAPPAE 167 (253)
T ss_dssp HHHHHHHTSSCC---CSEEEEETCTTTHHHHHHT-TCSEEEEEESB--HHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC
T ss_pred HHHHHHHhcCCC---CCeEEEecCCccHHHHHhc-cCCeEEEEeCC--HHHHHHHHHHHHhcCCCceEEEeecccCCCCC
Confidence 334444554422 3455999999999999888 77788886655 45554322 2342 456677877766544
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+||+|++.-++|++.+.+. ....++.+.|+++|+++-..
T Consensus 168 -~~DvvLllk~lh~LE~q~~--~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 168 -AGDLALIFKLLPLLEREQA--GSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp -BCSEEEEESCHHHHHHHST--THHHHHHHHCBCSEEEEEEE
T ss_pred -CcchHHHHHHHHHhhhhch--hhHHHHHHHhcCCCEEEEcC
Confidence 8999999988877533222 23348888999999987776
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.8e-06 Score=81.79 Aligned_cols=52 Identities=21% Similarity=0.136 Sum_probs=40.1
Q ss_pred cCcCCCCCCcccEEEEcccccccCCch-----------------------------------hHHHHHHHHHHcccCCcE
Q 047630 289 SQRLPFFDNTLDIVHSMHVLSNWIPTT-----------------------------------LLHFLMFDIYRVLRPGGL 333 (392)
Q Consensus 289 ~~~Lpf~d~sFDlV~s~~~l~~~~~~~-----------------------------------~l~~~L~el~RvLKPGG~ 333 (392)
...-.|++++||+|+++.++|.+.+.. ++..+|+..+|.|+|||+
T Consensus 141 Fy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~ 220 (374)
T 3b5i_A 141 FYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGA 220 (374)
T ss_dssp TTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred hhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 333457899999999999996543211 456679999999999999
Q ss_pred EEEEeec
Q 047630 334 FWLDHFF 340 (392)
Q Consensus 334 lii~~~~ 340 (392)
+++....
T Consensus 221 mvl~~~g 227 (374)
T 3b5i_A 221 MFLVCLG 227 (374)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9888653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=89.18 Aligned_cols=109 Identities=10% Similarity=0.078 Sum_probs=71.0
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---------------CCEEEEEecCCCchhHHH----HHhcC----
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---------------NITIVTTSMNLNGPFNNF----IASRG---- 280 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---------------g~~vvg~~iD~~a~~~~~----aa~rg---- 280 (392)
++.+++...++.+| ||.|||+|.++..+++. +..++|+|+|. ..... +..+|
T Consensus 162 ~mv~~l~~~~~~~V---lDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~--~~~~lA~~nl~l~g~~~~ 236 (445)
T 2okc_A 162 AMVDCINPQMGETV---CDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTP--LVVTLASMNLYLHGIGTD 236 (445)
T ss_dssp HHHHHHCCCTTCCE---EETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCH--HHHHHHHHHHHHTTCCSS
T ss_pred HHHHHhCCCCCCEE---eccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCH--HHHHHHHHHHHHhCCCcC
Confidence 33334433333445 99999999998887763 35688866543 33322 22233
Q ss_pred CccEEEeccCcCCCCCCcccEEEEcccccccCCch--------------hHHHHHHHHHHcccCCcEEEEEe
Q 047630 281 VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT--------------LLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 281 ~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~--------------~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+.+.++|....+.. ..||+|+++..+....... .-..+++.+.+.|||||++.+..
T Consensus 237 ~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 237 RSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp CCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 357888887776643 4899999997665422111 11368999999999999997765
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.6e-06 Score=81.41 Aligned_cols=132 Identities=11% Similarity=-0.001 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcCC-
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRLP- 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~Lp- 293 (392)
.+.+++.+++...... ..|||+|||+|.++..+++....|+++| ++....+ .+..++ .+.++.+|+.++.
T Consensus 199 ~~~l~~~~~~~~~~~~-~~vLDl~cG~G~~~l~la~~~~~V~gvd--~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~ 275 (369)
T 3bt7_A 199 NIQMLEWALDVTKGSK-GDLLELYCGNGNFSLALARNFDRVLATE--IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 275 (369)
T ss_dssp HHHHHHHHHHHTTTCC-SEEEEESCTTSHHHHHHGGGSSEEEEEC--CCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH
T ss_pred HHHHHHHHHHHhhcCC-CEEEEccCCCCHHHHHHHhcCCEEEEEE--CCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence 3556666655432211 2359999999999999999878899855 5344443 233334 3678888876541
Q ss_pred -CCC--------------CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC
Q 047630 294 -FFD--------------NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 294 -f~d--------------~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG 358 (392)
+.. .+||+|+....... +..++.+.|+++|.+++... ....+...+..+.+ |
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g---------~~~~~~~~l~~~g~ivyvsc--~p~t~ard~~~l~~--~ 342 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSG---------LDSETEKMVQAYPRILYISC--NPETLCKNLETLSQ--T 342 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC---------CCHHHHHHHTTSSEEEEEES--CHHHHHHHHHHHHH--H
T ss_pred HHhhccccccccccccccCCCCEEEECcCccc---------cHHHHHHHHhCCCEEEEEEC--CHHHHHHHHHHHhh--C
Confidence 111 37999987533211 34567777889998877653 22333344444433 5
Q ss_pred CeEEEEEEee
Q 047630 359 FNKLKWVVGR 368 (392)
Q Consensus 359 f~~i~w~~~~ 368 (392)
|+..+.....
T Consensus 343 y~~~~~~~~D 352 (369)
T 3bt7_A 343 HKVERLALFD 352 (369)
T ss_dssp EEEEEEEEEC
T ss_pred cEEEEEEeec
Confidence 7776666553
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-06 Score=82.81 Aligned_cols=75 Identities=8% Similarity=0.116 Sum_probs=55.9
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc---CCccEEEeccCcCCCCCC-cccEEEE
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR---GVVPLYISISQRLPFFDN-TLDIVHS 304 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r---g~i~~~~~d~~~Lpf~d~-sFDlV~s 304 (392)
+.+.++ .| ||||||+|.++..+++.+..|+++|+| ..+.+.+.++ +.+.++++|+..+++++. .+|.|++
T Consensus 43 ~~~~~~-~V---LEIG~G~G~lt~~L~~~~~~V~avEid--~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~ 116 (271)
T 3fut_A 43 ARPFTG-PV---FEVGPGLGALTRALLEAGAEVTAIEKD--LRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVA 116 (271)
T ss_dssp HCCCCS-CE---EEECCTTSHHHHHHHHTTCCEEEEESC--GGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEE
T ss_pred cCCCCC-eE---EEEeCchHHHHHHHHHcCCEEEEEECC--HHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEe
Confidence 334444 55 999999999999999999999996655 4555544332 347899999999887653 6899998
Q ss_pred ccccc
Q 047630 305 MHVLS 309 (392)
Q Consensus 305 ~~~l~ 309 (392)
+..++
T Consensus 117 NlPy~ 121 (271)
T 3fut_A 117 NLPYH 121 (271)
T ss_dssp EECSS
T ss_pred cCccc
Confidence 87653
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=82.46 Aligned_cols=74 Identities=14% Similarity=0.272 Sum_probs=53.2
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCC----Cccc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFD----NTLD 300 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d----~sFD 300 (392)
+.+.++.+| ||||||+|.++..+++.+..++++|+| ..+.+.+.++ +.+.++++|+..+++++ +.||
T Consensus 25 ~~~~~~~~V---LEIG~G~G~lt~~La~~~~~V~avEid--~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~ 99 (255)
T 3tqs_A 25 IHPQKTDTL---VEIGPGRGALTDYLLTECDNLALVEID--RDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR 99 (255)
T ss_dssp HCCCTTCEE---EEECCTTTTTHHHHTTTSSEEEEEECC--HHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE
T ss_pred cCCCCcCEE---EEEcccccHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE
Confidence 344455555 999999999999999999899995544 4555443332 35789999999987743 4688
Q ss_pred EEEEcccc
Q 047630 301 IVHSMHVL 308 (392)
Q Consensus 301 lV~s~~~l 308 (392)
|+++..+
T Consensus 100 -vv~NlPY 106 (255)
T 3tqs_A 100 -VVGNLPY 106 (255)
T ss_dssp -EEEECCH
T ss_pred -EEecCCc
Confidence 6666544
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.2e-06 Score=84.38 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=68.0
Q ss_pred EEEEcCCcchHHHHHHHcC----------------------------------------CEEEEEecCCCchhHH----H
Q 047630 240 GLDIGGGVATFAVRMMERN----------------------------------------ITIVTTSMNLNGPFNN----F 275 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g----------------------------------------~~vvg~~iD~~a~~~~----~ 275 (392)
|||.+||+|.++..++..+ ..++|+|+|. ...+ .
T Consensus 199 vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~--~ai~~Ar~N 276 (385)
T 3ldu_A 199 LVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDE--ESIDIAREN 276 (385)
T ss_dssp EEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCH--HHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCH--HHHHHHHHH
Confidence 4999999999998887642 4588866543 3333 2
Q ss_pred HHhcC---CccEEEeccCcCCCCCCcccEEEEcccccc-cCCchhHHHHHHHHHHcccC--CcEEEEEe
Q 047630 276 IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN-WIPTTLLHFLMFDIYRVLRP--GGLFWLDH 338 (392)
Q Consensus 276 aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~-~~~~~~l~~~L~el~RvLKP--GG~lii~~ 338 (392)
+...| .+.+.++|+.+++.+ .+||+|+++..+.. +.+...+..+.+++.++||+ ||.+++..
T Consensus 277 a~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 277 AEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp HHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred HHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 33334 378899999988764 58999999876542 22335667788888888887 88887664
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.7e-06 Score=84.21 Aligned_cols=96 Identities=8% Similarity=0.015 Sum_probs=66.6
Q ss_pred EEEEcCCcchHHHHHHHcC----------------------------------------CEEEEEecCCCchhHH----H
Q 047630 240 GLDIGGGVATFAVRMMERN----------------------------------------ITIVTTSMNLNGPFNN----F 275 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g----------------------------------------~~vvg~~iD~~a~~~~----~ 275 (392)
|||.+||+|.++...+..+ ..++|+|+|. .+.+ .
T Consensus 205 vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~--~al~~Ar~N 282 (393)
T 3k0b_A 205 FYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDA--RLIEIAKQN 282 (393)
T ss_dssp EEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCH--HHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCH--HHHHHHHHH
Confidence 4999999999988877632 3488855543 4443 2
Q ss_pred HHhcC---CccEEEeccCcCCCCCCcccEEEEcccccc-cCCchhHHHHHHHHHHcccC--CcEEEEEe
Q 047630 276 IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN-WIPTTLLHFLMFDIYRVLRP--GGLFWLDH 338 (392)
Q Consensus 276 aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~-~~~~~~l~~~L~el~RvLKP--GG~lii~~ 338 (392)
+...| .+.+.++|+.+++.+ .+||+|+++..+.. ..+...+..+.+++.++||+ ||.+++..
T Consensus 283 a~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 283 AVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred HHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 33334 378999999998865 48999999955432 22334566777878788877 88887764
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4e-05 Score=75.91 Aligned_cols=143 Identities=10% Similarity=0.065 Sum_probs=90.9
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.++..+ ||+||.+|.++..+++++..|++ +|. .++.......+.+.++.+|...+....+.||+|+|-.+...
T Consensus 210 ~~G~~v---lDLGAaPGGWT~~l~~rg~~V~a--VD~-~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~p- 282 (375)
T 4auk_A 210 ANGMWA---VDLGACPGGWTYQLVKRNMWVYS--VDN-GPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKP- 282 (375)
T ss_dssp CTTCEE---EEETCTTCHHHHHHHHTTCEEEE--ECS-SCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSCH-
T ss_pred CCCCEE---EEeCcCCCHHHHHHHHCCCEEEE--EEh-hhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCCh-
Confidence 455555 99999999999999999999999 555 45555555556688999998888777788999999776532
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeeccc--ccch---HHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV--GAQL---EDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLE 386 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~--~~~l---~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~ 386 (392)
.....++..+...+..++.++...+.-. .+.+ ...+...++..||...- . ... ...++.|+ ++.++
T Consensus 283 ---~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~l-~-akh--L~hdReEi--TV~~r 353 (375)
T 4auk_A 283 ---AKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQI-Q-ARQ--LYHDREEV--TVHVR 353 (375)
T ss_dssp ---HHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEEE-E-EEC--CTTCSSEE--EEEEE
T ss_pred ---HHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchhh-e-ehh--hccCCcEE--EEEEE
Confidence 3433444444444444455544333211 1111 34466778888886421 1 111 11234454 67888
Q ss_pred cCCC
Q 047630 387 KPFL 390 (392)
Q Consensus 387 Kp~~ 390 (392)
||..
T Consensus 354 k~~a 357 (375)
T 4auk_A 354 RIWA 357 (375)
T ss_dssp ECCC
T ss_pred echh
Confidence 8864
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-05 Score=77.18 Aligned_cols=130 Identities=16% Similarity=0.083 Sum_probs=79.7
Q ss_pred EEEEEcCCcchHHHHHHHc-----------------CCEEEEEecCCC-chhHH----------HH-HhcCC---ccEEE
Q 047630 239 IGLDIGGGVATFAVRMMER-----------------NITIVTTSMNLN-GPFNN----------FI-ASRGV---VPLYI 286 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-----------------g~~vvg~~iD~~-a~~~~----------~a-a~rg~---i~~~~ 286 (392)
.|+|+||++|..+..+.+. .+.+..+--|+- -++.. .. ...|. .-|+.
T Consensus 55 ~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~ 134 (384)
T 2efj_A 55 KVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIG 134 (384)
T ss_dssp EEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEEE
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEEE
Confidence 4599999999988766552 123333234441 23321 11 12221 23444
Q ss_pred ec---cCcCCCCCCcccEEEEcccccccCCch-h-----------------------------------HHHHHHHHHHc
Q 047630 287 SI---SQRLPFFDNTLDIVHSMHVLSNWIPTT-L-----------------------------------LHFLMFDIYRV 327 (392)
Q Consensus 287 ~d---~~~Lpf~d~sFDlV~s~~~l~~~~~~~-~-----------------------------------l~~~L~el~Rv 327 (392)
+. ...-.|++++||+|+++.++|...+.. . +..+|+-.+|.
T Consensus 135 gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~e 214 (384)
T 2efj_A 135 AMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEE 214 (384)
T ss_dssp ECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 334578999999999999996543221 1 12236677999
Q ss_pred ccCCcEEEEEeeccccc--c------h-----------------------------HHHHHHHHHHcC-CeEEEEEEee
Q 047630 328 LRPGGLFWLDHFFCVGA--Q------L-----------------------------EDVYVPLIESVG-FNKLKWVVGR 368 (392)
Q Consensus 328 LKPGG~lii~~~~~~~~--~------l-----------------------------~~~l~~ll~~aG-f~~i~w~~~~ 368 (392)
|+|||++++........ . + .++++.++++.| |++.+.+...
T Consensus 215 L~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~ 293 (384)
T 2efj_A 215 LISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFN 293 (384)
T ss_dssp EEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred hccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEe
Confidence 99999999987644332 1 0 667888899874 7777766443
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.6e-06 Score=81.72 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=69.0
Q ss_pred EEEEcCCcchHHHHHHHcC----------------------------------------CEEEEEecCCCchhHH----H
Q 047630 240 GLDIGGGVATFAVRMMERN----------------------------------------ITIVTTSMNLNGPFNN----F 275 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g----------------------------------------~~vvg~~iD~~a~~~~----~ 275 (392)
+||.+||+|.++...+..+ ..++|+|+|. .+.+ +
T Consensus 198 llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~--~al~~Ar~N 275 (384)
T 3ldg_A 198 FVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDG--RMVEIARKN 275 (384)
T ss_dssp EEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCH--HHHHHHHHH
T ss_pred EEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCH--HHHHHHHHH
Confidence 4999999999988877632 3488866543 4433 2
Q ss_pred HHhcC---CccEEEeccCcCCCCCCcccEEEEcccccc-cCCchhHHHHHHHHHHcccC--CcEEEEEee
Q 047630 276 IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN-WIPTTLLHFLMFDIYRVLRP--GGLFWLDHF 339 (392)
Q Consensus 276 aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~-~~~~~~l~~~L~el~RvLKP--GG~lii~~~ 339 (392)
+...| .+.+.++|+.+++.+ .+||+|+++-.+.. +.+...++.+.+++.+.||+ ||.+++...
T Consensus 276 a~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 276 AREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 33334 377899999998865 48999999965532 33446777888888888887 888877643
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.10 E-value=2e-05 Score=76.42 Aligned_cols=136 Identities=10% Similarity=-0.018 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~ 291 (392)
...++..++...++.+| ||+|||+|..+..+++. ...|+++|++ ....+ .+.+.| .+.++.+|+..
T Consensus 90 ~s~l~~~~l~~~~g~~V---LDlcaG~G~kt~~la~~~~~~g~V~a~D~~--~~~l~~~~~n~~r~g~~~v~~~~~D~~~ 164 (309)
T 2b9e_A 90 ASCLPAMLLDPPPGSHV---IDACAAPGNKTSHLAALLKNQGKIFAFDLD--AKRLASMATLLARAGVSCCELAEEDFLA 164 (309)
T ss_dssp GGGHHHHHHCCCTTCEE---EESSCTTCHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred HHHHHHHHhCCCCCCEE---EEeCCChhHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEeCChHh
Confidence 34455556666666666 99999999999999883 3578885544 44443 233334 36788888877
Q ss_pred CCCCC---CcccEEEEcc------cccc-----cC---Cchh-------HHHHHHHHHHcccCCcEEEEEeecccccchH
Q 047630 292 LPFFD---NTLDIVHSMH------VLSN-----WI---PTTL-------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLE 347 (392)
Q Consensus 292 Lpf~d---~sFDlV~s~~------~l~~-----~~---~~~~-------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~ 347 (392)
++... ++||.|++.- .+.. |. .+++ ..++|..+.+.|+ ||++++....-..++..
T Consensus 165 ~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene 243 (309)
T 2b9e_A 165 VSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENE 243 (309)
T ss_dssp SCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTH
T ss_pred cCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhH
Confidence 75432 5799999731 1111 00 0111 1356788888887 99998876543334444
Q ss_pred HHHHHHHHHc-C-CeEE
Q 047630 348 DVYVPLIESV-G-FNKL 362 (392)
Q Consensus 348 ~~l~~ll~~a-G-f~~i 362 (392)
+.+...+++. + |+.+
T Consensus 244 ~~v~~~l~~~~~~~~~~ 260 (309)
T 2b9e_A 244 DVVRDALQQNPGAFRLA 260 (309)
T ss_dssp HHHHHHHTTSTTTEEEC
T ss_pred HHHHHHHHhCCCcEEEe
Confidence 5566677665 3 5544
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.97 E-value=5.1e-05 Score=75.05 Aligned_cols=99 Identities=19% Similarity=0.098 Sum_probs=61.9
Q ss_pred EEEEcCCcchHHHHHHHc----------------C--CEEEEEecCCCchhHHHHHhcC------CccEEEe---ccCcC
Q 047630 240 GLDIGGGVATFAVRMMER----------------N--ITIVTTSMNLNGPFNNFIASRG------VVPLYIS---ISQRL 292 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~----------------g--~~vvg~~iD~~a~~~~~aa~rg------~i~~~~~---d~~~L 292 (392)
|+|+||++|..+..+.+. . .+|...|+-. .++......-. ..-++.+ +...-
T Consensus 55 IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~-NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~r 133 (359)
T 1m6e_X 55 IADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPG-NDFNAIFRSLPIENDVDGVCFINGVPGSFYGR 133 (359)
T ss_dssp CEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTT-SCHHHHHTTTTTSCSCTTCEEEEEEESCSSSC
T ss_pred EEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCc-hHHHHHHHhcchhcccCCCEEEEecchhhhhc
Confidence 499999999865544332 2 3455544322 33333211110 1123333 34456
Q ss_pred CCCCCcccEEEEcccccccCCc------------------------------hhHHHHHHHHHHcccCCcEEEEEee
Q 047630 293 PFFDNTLDIVHSMHVLSNWIPT------------------------------TLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~~------------------------------~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.|+++++|+|+++.++|..... .++..+|+..++.|+|||++++...
T Consensus 134 lfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 134 LFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp CSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred cCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 7899999999999999654321 1345568889999999999988865
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.3e-06 Score=77.84 Aligned_cols=82 Identities=12% Similarity=0.078 Sum_probs=54.3
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCc-------hhHHHHHhc-------CCccEEEecc
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNG-------PFNNFIASR-------GVVPLYISIS 289 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a-------~~~~~aa~r-------g~i~~~~~d~ 289 (392)
++.+.+...++.++ ||+|||+|.++..+++.+..|+++| ++. ...+.+.++ +.+.++.+|.
T Consensus 74 ~l~~a~~~~~~~~V---LDlgcG~G~~a~~lA~~g~~V~~vD--~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~ 148 (258)
T 2r6z_A 74 LIAKAVNHTAHPTV---WDATAGLGRDSFVLASLGLTVTAFE--QHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA 148 (258)
T ss_dssp HHHHHTTGGGCCCE---EETTCTTCHHHHHHHHTTCCEEEEE--CCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred HHHHHhCcCCcCeE---EEeeCccCHHHHHHHHhCCEEEEEE--CChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence 34444444344555 9999999999999999988999855 534 232222221 2378899987
Q ss_pred CcC-C-CCC--CcccEEEEcccccc
Q 047630 290 QRL-P-FFD--NTLDIVHSMHVLSN 310 (392)
Q Consensus 290 ~~L-p-f~d--~sFDlV~s~~~l~~ 310 (392)
..+ + +++ ++||+|++...+.+
T Consensus 149 ~~~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 149 AEQMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHHHHHHHHHCCCSEEEECCCC--
T ss_pred HHHHHhhhccCCCccEEEECCCCCC
Confidence 764 3 444 78999999876655
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.96 E-value=4.8e-05 Score=79.21 Aligned_cols=111 Identities=13% Similarity=0.056 Sum_probs=69.6
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--------------------CCEEEEEecCCCchhHHH----HHh
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--------------------NITIVTTSMNLNGPFNNF----IAS 278 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--------------------g~~vvg~~iD~~a~~~~~----aa~ 278 (392)
.++.+++...++.+| ||.|||+|.++..+++. ...++|+++|. ..... +..
T Consensus 159 ~~mv~~l~p~~~~~V---lDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~--~~~~lA~~nl~l 233 (541)
T 2ar0_A 159 KTIIHLLKPQPREVV---QDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP--GTRRLALMNCLL 233 (541)
T ss_dssp HHHHHHHCCCTTCCE---EETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH--HHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCeE---ecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCH--HHHHHHHHHHHH
Confidence 333344433334445 99999999998777652 13688866543 33322 222
Q ss_pred cCC-------ccEEEeccCcCC-CCCCcccEEEEcccccccCC-----------chhHHHHHHHHHHcccCCcEEEEEe
Q 047630 279 RGV-------VPLYISISQRLP-FFDNTLDIVHSMHVLSNWIP-----------TTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 279 rg~-------i~~~~~d~~~Lp-f~d~sFDlV~s~~~l~~~~~-----------~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
++. +.+.++|....+ ...+.||+|+++..+..... ...-..++..+.+.|||||++.+..
T Consensus 234 ~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 234 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 332 467888865543 34578999999866643211 1111268999999999999997765
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=3e-05 Score=72.78 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=47.2
Q ss_pred EEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHhc--CCccEEEeccCcCCCCCCc-ccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIASR--GVVPLYISISQRLPFFDNT-LDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~r--g~i~~~~~d~~~Lpf~d~s-FDlV~s~~~l 308 (392)
|||||||+|.++..+++.+ ..+++ +|++..+.+.+.++ ..+.++++|+..+++++.. ...|+++..+
T Consensus 35 VLDiG~G~G~lt~~L~~~~~~~v~a--vEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~vv~NlPy 105 (249)
T 3ftd_A 35 VVEVGGGTGNLTKVLLQHPLKKLYV--IELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKVVGNLPY 105 (249)
T ss_dssp EEEEESCHHHHHHHHTTSCCSEEEE--ECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEEEEECCT
T ss_pred EEEEcCchHHHHHHHHHcCCCeEEE--EECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEEEEECch
Confidence 4999999999999999985 78988 55544555555544 2367899999998876521 1255555443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=77.01 Aligned_cols=138 Identities=11% Similarity=0.019 Sum_probs=78.3
Q ss_pred EEEEEcCCcchHHHHHHHc-CC-EEEEEecCCCchhHHHHH---hcC-CccEEEeccCcCCCCCCcccEEEEcccccc--
Q 047630 239 IGLDIGGGVATFAVRMMER-NI-TIVTTSMNLNGPFNNFIA---SRG-VVPLYISISQRLPFFDNTLDIVHSMHVLSN-- 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~-~vvg~~iD~~a~~~~~aa---~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~-- 310 (392)
.|||+|||.|.|+...++. ++ .++|+++.. +...... ..+ .+.....+..-..+..+.+|+|+|..+...
T Consensus 93 ~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~--d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmApnsG~ 170 (282)
T 3gcz_A 93 IVVDLGCGRGGWSYYAASLKNVKKVMAFTLGV--QGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGESSPS 170 (282)
T ss_dssp EEEEETCTTCHHHHHHHTSTTEEEEEEECCCC--TTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCCCCSC
T ss_pred EEEEeCCCCCHHHHHHHHhcCCCeeeeEEecc--CccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCccCCCC
Confidence 3599999999999988864 43 355644432 2111000 011 112223222333456788999999877751
Q ss_pred -cCCchhHHHHHHHHHHcccCC--cEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEE
Q 047630 311 -WIPTTLLHFLMFDIYRVLRPG--GLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSA 383 (392)
Q Consensus 311 -~~~~~~l~~~L~el~RvLKPG--G~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsa 383 (392)
+.+......+|.-+.++|||| |.|++-.|..-.++..+ +.+.+++. |+.+.+..- . .-....|.|+.+
T Consensus 171 ~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~-l~~~lk~~-F~~V~~~KP-a--SR~~S~E~Y~V~ 241 (282)
T 3gcz_A 171 IAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIME-ELSRLQLK-HGGGLVRVP-L--SRNSTHEMYWVS 241 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHH-HHHHHHHH-HCCEEECCT-T--SCTTCCCEEEET
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHH-HHHHHHHh-cCCEEEEcC-C--CcccCcceeEEE
Confidence 112222224577778999999 99999766532344433 44455554 777766533 1 113456787743
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.8e-06 Score=78.14 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=51.4
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCE----EEEEecCCCchhHHHHHhc--CCccEEEeccCcCCCCCC-----
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNIT----IVTTSMNLNGPFNNFIASR--GVVPLYISISQRLPFFDN----- 297 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~----vvg~~iD~~a~~~~~aa~r--g~i~~~~~d~~~Lpf~d~----- 297 (392)
+.+.++.+| ||||||+|.++..|++.+.. ++++|+| ..+.+.+.++ ..+.++++|+..+++++-
T Consensus 38 ~~~~~~~~V---LEIG~G~G~lt~~La~~~~~~~~~V~avDid--~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~~~~ 112 (279)
T 3uzu_A 38 IRPERGERM---VEIGPGLGALTGPVIARLATPGSPLHAVELD--RDLIGRLEQRFGELLELHAGDALTFDFGSIARPGD 112 (279)
T ss_dssp HCCCTTCEE---EEECCTTSTTHHHHHHHHCBTTBCEEEEECC--HHHHHHHHHHHGGGEEEEESCGGGCCGGGGSCSSS
T ss_pred cCCCCcCEE---EEEccccHHHHHHHHHhCCCcCCeEEEEECC--HHHHHHHHHhcCCCcEEEECChhcCChhHhccccc
Confidence 334455555 99999999999999998777 9885544 4555544443 347899999999887542
Q ss_pred -cccEEEEcccc
Q 047630 298 -TLDIVHSMHVL 308 (392)
Q Consensus 298 -sFDlV~s~~~l 308 (392)
..+.|+++..+
T Consensus 113 ~~~~~vv~NlPY 124 (279)
T 3uzu_A 113 EPSLRIIGNLPY 124 (279)
T ss_dssp SCCEEEEEECCH
T ss_pred CCceEEEEccCc
Confidence 22356665543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1.2e-05 Score=80.11 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=63.9
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhc---------------CC--ccEEEecc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASR---------------GV--VPLYISIS 289 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~r---------------g~--i~~~~~d~ 289 (392)
++.+| ||+|||+|.++..++++ +..|+++|+|. ...+ ++... +. +.++.+|+
T Consensus 47 ~~~~V---LDl~aGtG~~~l~~a~~~~~~~V~avDi~~--~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da 121 (378)
T 2dul_A 47 NPKIV---LDALSATGIRGIRFALETPAEEVWLNDISE--DAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA 121 (378)
T ss_dssp CCSEE---EESSCTTSHHHHHHHHHSSCSEEEEEESCH--HHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH
T ss_pred CCCEE---EECCCchhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcH
Confidence 44555 99999999999999985 35788866554 3332 33333 42 56777886
Q ss_pred CcCCC-CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 290 QRLPF-FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 290 ~~Lpf-~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+.. ..+.||+|+..- .. . ...++..+.+.||+||+++++.
T Consensus 122 ~~~~~~~~~~fD~I~lDP-~~---~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 122 NRLMAERHRYFHFIDLDP-FG---S---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHHHSTTCEEEEEECC-SS---C---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccCCCCEEEeCC-CC---C---HHHHHHHHHHhcCCCCEEEEEe
Confidence 55421 245799999542 21 1 1358899999999999988764
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.2e-05 Score=83.07 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=64.3
Q ss_pred CcccEEEEEcCCcchH---HHHHHHc-CC--EEEEEecCCCchhHH----HHHhcC---CccEEEeccCcCCCCCCcccE
Q 047630 235 GTIRIGLDIGGGVATF---AVRMMER-NI--TIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~---a~~La~~-g~--~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~Lpf~d~sFDl 301 (392)
.+..+|||||||+|-+ +...+++ +. +|++++ .+ ++.. ...+++ .|+++.++++++..+ +.+|+
T Consensus 356 ~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVE--kn-p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDI 431 (637)
T 4gqb_A 356 TNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVE--KN-PNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADI 431 (637)
T ss_dssp TCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEE--SC-HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEE
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEE--CC-HHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCE
Confidence 3445689999999987 4444433 33 567744 42 2322 222333 489999999998765 57999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEE
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~li 335 (392)
|++=..= .+...+.+..++....|.|||||+++
T Consensus 432 IVSEwMG-~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 432 IVSELLG-SFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EECCCCB-TTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEcCc-ccccccCCHHHHHHHHHhcCCCcEEc
Confidence 9986433 22334555678888999999999983
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.5e-05 Score=72.74 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=47.0
Q ss_pred ccEEEeccCc-CCCCCC----cccEEEEc-ccccccCCch-hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHH
Q 047630 282 VPLYISISQR-LPFFDN----TLDIVHSM-HVLSNWIPTT-LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLI 354 (392)
Q Consensus 282 i~~~~~d~~~-Lpf~d~----sFDlV~s~-~~l~~~~~~~-~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll 354 (392)
+.++.+|+.+ ++..+. .||+|+.- +.... .++ --..++.+++|+|||||+|+. +... ..++..+
T Consensus 152 l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~--~p~lw~~~~l~~l~~~L~pGG~l~t---ysaa----~~vrr~L 222 (257)
T 2qy6_A 152 LDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK--NPDMWTQNLFNAMARLARPGGTLAT---FTSA----GFVRRGL 222 (257)
T ss_dssp EEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT--CGGGCCHHHHHHHHHHEEEEEEEEE---SCCB----HHHHHHH
T ss_pred EEEEECcHHHHHhhcccccCCeEEEEEECCCCccc--ChhhcCHHHHHHHHHHcCCCcEEEE---EeCC----HHHHHHH
Confidence 4567777655 443322 79999974 22211 111 124689999999999999974 2222 2367788
Q ss_pred HHcCCeEEE
Q 047630 355 ESVGFNKLK 363 (392)
Q Consensus 355 ~~aGf~~i~ 363 (392)
.++||++.+
T Consensus 223 ~~aGF~v~~ 231 (257)
T 2qy6_A 223 QEAGFTMQK 231 (257)
T ss_dssp HHHTEEEEE
T ss_pred HHCCCEEEe
Confidence 889999664
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=6.1e-05 Score=80.82 Aligned_cols=97 Identities=14% Similarity=0.011 Sum_probs=63.0
Q ss_pred EEEEcCCcchHHHHHHHc--------------------------------------------CCEEEEEecCCCchhHH-
Q 047630 240 GLDIGGGVATFAVRMMER--------------------------------------------NITIVTTSMNLNGPFNN- 274 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--------------------------------------------g~~vvg~~iD~~a~~~~- 274 (392)
+||.+||+|.++...+.. ...++|+|+|. ...+
T Consensus 194 llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~--~av~~ 271 (703)
T 3v97_A 194 LLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDA--RVIQR 271 (703)
T ss_dssp EEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCH--HHHHH
T ss_pred EEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCH--HHHHH
Confidence 499999999998776653 14688866554 3333
Q ss_pred ---HHHhcCC---ccEEEeccCcC--CCCCCcccEEEEcccccc-cCCchhHHHHHHHHHHc---ccCCcEEEEEe
Q 047630 275 ---FIASRGV---VPLYISISQRL--PFFDNTLDIVHSMHVLSN-WIPTTLLHFLMFDIYRV---LRPGGLFWLDH 338 (392)
Q Consensus 275 ---~aa~rg~---i~~~~~d~~~L--pf~d~sFDlV~s~~~l~~-~~~~~~l~~~L~el~Rv---LKPGG~lii~~ 338 (392)
++...|+ +.+.++|+..+ |..+++||+|+++-.+.. +.+...+..+.+.+.++ +.|||.+++..
T Consensus 272 A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 272 ARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 3334453 67889998887 444458999999955432 23344555555555544 45799987653
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2.3e-05 Score=78.45 Aligned_cols=90 Identities=9% Similarity=-0.016 Sum_probs=61.8
Q ss_pred EEEEcCCcchHHHHHHHc--C-CEEEEEecCCCchhHH----HHHhcCC----ccEEEeccCcC-C-CCCCcccEEEEcc
Q 047630 240 GLDIGGGVATFAVRMMER--N-ITIVTTSMNLNGPFNN----FIASRGV----VPLYISISQRL-P-FFDNTLDIVHSMH 306 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g-~~vvg~~iD~~a~~~~----~aa~rg~----i~~~~~d~~~L-p-f~d~sFDlV~s~~ 306 (392)
|||++||+|.++..++++ | ..|++ +|++....+ ++..+++ +.++.+|+..+ . ...+.||+|++.-
T Consensus 56 VLDlfaGtG~~sl~aa~~~~ga~~V~a--vDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP 133 (392)
T 3axs_A 56 VADPLSASGIRAIRFLLETSCVEKAYA--NDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDP 133 (392)
T ss_dssp EEESSCTTSHHHHHHHHHCSCEEEEEE--ECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECC
T ss_pred EEECCCcccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECC
Confidence 499999999999999984 5 46777 445334333 3334443 56777776543 1 2246799999765
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
. .. ...++..+.+.|++||+++++.
T Consensus 134 -~---g~---~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 134 -F---GT---PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp -S---SC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred -C---cC---HHHHHHHHHHHhCCCCEEEEEe
Confidence 1 11 1348889999999999998875
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.71 E-value=2.9e-05 Score=82.53 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=65.0
Q ss_pred ccEEEEEcCCcchHHHH---HHH-cC-----------CEEEEEecCCCchhH-HHHHhcC---CccEEEeccCcCCCC--
Q 047630 237 IRIGLDIGGGVATFAVR---MME-RN-----------ITIVTTSMNLNGPFN-NFIASRG---VVPLYISISQRLPFF-- 295 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~---La~-~g-----------~~vvg~~iD~~a~~~-~~aa~rg---~i~~~~~d~~~Lpf~-- 295 (392)
..+|||||||+|-+... .++ .+ ..|++++.+..+... +....++ .|.++.++++++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 34689999999998532 221 22 377775543211111 1222233 489999999988764
Q ss_pred ---CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEE
Q 047630 296 ---DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 296 ---d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~li 335 (392)
.+..|+|++-..- .+.+.+.....|..+.|.|||||+++
T Consensus 490 ~~~~ekVDIIVSElmG-sfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLG-SFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCB-TTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccc-cccchhccHHHHHHHHHhCCCCcEEE
Confidence 5789999997543 33455656678888999999999884
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.67 E-value=3e-05 Score=72.90 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=49.7
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCE--EEEEecCCCchhHHHHHhcC----CccEEEeccCcCCCCCC-----
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNIT--IVTTSMNLNGPFNNFIASRG----VVPLYISISQRLPFFDN----- 297 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~--vvg~~iD~~a~~~~~aa~rg----~i~~~~~d~~~Lpf~d~----- 297 (392)
+.+.++.+| ||||||+|.++. +.+ +.. +++ +|++..+.+.+.++- .+.++++|+..+++++.
T Consensus 17 ~~~~~~~~V---LEIG~G~G~lt~-l~~-~~~~~v~a--vEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~ 89 (252)
T 1qyr_A 17 INPQKGQAM---VEIGPGLAALTE-PVG-ERLDQLTV--IELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMG 89 (252)
T ss_dssp HCCCTTCCE---EEECCTTTTTHH-HHH-TTCSCEEE--ECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHT
T ss_pred cCCCCcCEE---EEECCCCcHHHH-hhh-CCCCeEEE--EECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccC
Confidence 344555556 999999999999 654 566 888 556455655555431 36889999988876432
Q ss_pred cccEEEEcccc
Q 047630 298 TLDIVHSMHVL 308 (392)
Q Consensus 298 sFDlV~s~~~l 308 (392)
..|.|+++..+
T Consensus 90 ~~~~vvsNlPY 100 (252)
T 1qyr_A 90 QPLRVFGNLPY 100 (252)
T ss_dssp SCEEEEEECCT
T ss_pred CceEEEECCCC
Confidence 34677777654
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.64 E-value=2.6e-05 Score=73.78 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=61.4
Q ss_pred HHHHHHhhCCC--CcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhH-------HHHHhc--------CCccEEE
Q 047630 224 SIDEVLATKKP--GTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN-------NFIASR--------GVVPLYI 286 (392)
Q Consensus 224 lI~~ll~l~~~--~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~-------~~aa~r--------g~i~~~~ 286 (392)
.+.+.+.+.++ .+| ||+|||+|..+..+++++..|++++.+ .... +.+.++ ..+.++.
T Consensus 77 ~l~~al~l~~g~~~~V---LDl~~G~G~dal~lA~~g~~V~~vE~~--~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~ 151 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDV---VDATAGLGRDAFVLASVGCRVRMLERN--PVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (258)
T ss_dssp HHHHHTTCBTTBCCCE---EETTCTTCHHHHHHHHHTCCEEEEECC--HHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred HHHHHhcccCCCCCEE---EEcCCcCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence 33444555554 455 999999999999999998899995544 3321 111110 1267888
Q ss_pred eccCc-CCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCc
Q 047630 287 SISQR-LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGG 332 (392)
Q Consensus 287 ~d~~~-Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG 332 (392)
+|... ++.....||+|++...+.+ .... .++++..++||+.+
T Consensus 152 ~D~~~~L~~~~~~fDvV~lDP~y~~-~~~s---aavkk~~~~lr~l~ 194 (258)
T 2oyr_A 152 ASSLTALTDITPRPQVVYLDPMFPH-KQKS---ALVKKEMRVFQSLV 194 (258)
T ss_dssp SCHHHHSTTCSSCCSEEEECCCCCC-CCC--------HHHHHHHHHS
T ss_pred CCHHHHHHhCcccCCEEEEcCCCCC-cccc---hHHHHHHHHHHHhh
Confidence 88665 3433347999999877744 2212 35666777777755
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00041 Score=72.24 Aligned_cols=118 Identities=17% Similarity=0.054 Sum_probs=69.9
Q ss_pred EEEEEcCCcchHHHHHHHc-----------------CCEEEEEecCCCchhHHH----HHhcCC---ccEEEeccCcCC-
Q 047630 239 IGLDIGGGVATFAVRMMER-----------------NITIVTTSMNLNGPFNNF----IASRGV---VPLYISISQRLP- 293 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-----------------g~~vvg~~iD~~a~~~~~----aa~rg~---i~~~~~d~~~Lp- 293 (392)
+|||.+||+|.+...+++. ...++| +|++...... +...|. +.+.++|....+
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G--~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYG--QESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEE--CCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEE--EeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 4599999999988776431 356777 5553333332 223342 222566654443
Q ss_pred CCCCcccEEEEcccccc--cCCc----------------------h--hHHHHHHHHHHcccCCcEEEEEee---ccccc
Q 047630 294 FFDNTLDIVHSMHVLSN--WIPT----------------------T--LLHFLMFDIYRVLRPGGLFWLDHF---FCVGA 344 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~--~~~~----------------------~--~l~~~L~el~RvLKPGG~lii~~~---~~~~~ 344 (392)
+.+..||+|+++-.+.. |... . .--.++..+.+.|||||++.+... .....
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~ 404 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNT 404 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCG
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCc
Confidence 45678999999865542 2110 0 011588999999999999866642 12221
Q ss_pred chHHHHHHHHHHcC
Q 047630 345 QLEDVYVPLIESVG 358 (392)
Q Consensus 345 ~l~~~l~~ll~~aG 358 (392)
.....+++.+.+.+
T Consensus 405 ~~~~~iRk~Lle~~ 418 (544)
T 3khk_A 405 NNEGEIRKTLVEQD 418 (544)
T ss_dssp GGHHHHHHHHHHTT
T ss_pred chHHHHHHHHHhCC
Confidence 23344677766654
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00077 Score=70.13 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=72.6
Q ss_pred EEEEEcCCcchHHHHHHHc-----CCEEEEEecCCCchhHH----HHHhcCC----ccEEEeccCcC--C-CCCCcccEE
Q 047630 239 IGLDIGGGVATFAVRMMER-----NITIVTTSMNLNGPFNN----FIASRGV----VPLYISISQRL--P-FFDNTLDIV 302 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-----g~~vvg~~iD~~a~~~~----~aa~rg~----i~~~~~d~~~L--p-f~d~sFDlV 302 (392)
+|||.+||+|.+...+++. ...++|+++|. .... .+..+|. +.+.++|.... | .....||+|
T Consensus 224 ~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~--~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~I 301 (542)
T 3lkd_A 224 TLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNT--STYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGV 301 (542)
T ss_dssp EEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEE
T ss_pred EEeecccchhHHHHHHHHHHHhccCceEEEEECcH--HHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEE
Confidence 4499999999988877764 56788866554 3222 2233443 35778886655 3 356789999
Q ss_pred EEcccccc-cCCc--------------------hhHHHHHHHHHHccc-CCcEEEEEeecc--cccchHHHHHHHHHHcC
Q 047630 303 HSMHVLSN-WIPT--------------------TLLHFLMFDIYRVLR-PGGLFWLDHFFC--VGAQLEDVYVPLIESVG 358 (392)
Q Consensus 303 ~s~~~l~~-~~~~--------------------~~l~~~L~el~RvLK-PGG~lii~~~~~--~~~~l~~~l~~ll~~aG 358 (392)
+++-.+.. |... .+ -.++..+.+.|| |||++.+..... ........+++.+-+.+
T Consensus 302 vaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~ 380 (542)
T 3lkd_A 302 LMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEG 380 (542)
T ss_dssp EECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTT
T ss_pred EecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCC
Confidence 99854421 1100 01 148999999999 999996654321 11222344666666654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=5.3e-05 Score=71.26 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=77.2
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-CC-EEEEEecCCCchhHHHHHh-cC--CccEEEe-ccCcCCCCCCcccEEEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-NI-TIVTTSMNLNGPFNNFIAS-RG--VVPLYIS-ISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g~-~vvg~~iD~~a~~~~~aa~-rg--~i~~~~~-d~~~Lpf~d~sFDlV~s 304 (392)
+.+++.| ||+||+.|.++.+.++. ++ .|.|..+.++.+....... .| .+.+..+ |+..++ ...+|+|+|
T Consensus 71 ikpg~~V---VDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLS 145 (269)
T 2px2_A 71 VQPIGKV---VDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLC 145 (269)
T ss_dssp CCCCEEE---EEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEE
T ss_pred CCCCCEE---EEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEe
Confidence 3455555 99999999999999985 33 2334322221000000000 22 1234446 777643 557999999
Q ss_pred cccccc---cCCchhHHHHHHHHHHcccCCc-EEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCccccee
Q 047630 305 MHVLSN---WIPTTLLHFLMFDIYRVLRPGG-LFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMY 380 (392)
Q Consensus 305 ~~~l~~---~~~~~~l~~~L~el~RvLKPGG-~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~y 380 (392)
-.+-.. ..+......+|.-+.++|+||| .|++-.|....++..+.+..+-.. |..++.+ ... .-.+..|+|
T Consensus 146 DMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~--F~~vkvk--~pa-SR~~S~E~Y 220 (269)
T 2px2_A 146 DIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR--FGGGLVR--VPL-SRNSNHEMY 220 (269)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH--HCCEEEC--CTT-SCTTCCCEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH--cCCEEEE--CCC-CCCCCccEE
Confidence 765531 1111111125666669999999 898877664334444433333333 5666532 221 123456888
Q ss_pred eEE
Q 047630 381 LSA 383 (392)
Q Consensus 381 lsa 383 (392)
+.+
T Consensus 221 lVa 223 (269)
T 2px2_A 221 WVS 223 (269)
T ss_dssp EET
T ss_pred EEe
Confidence 743
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00027 Score=67.73 Aligned_cols=139 Identities=12% Similarity=0.087 Sum_probs=76.8
Q ss_pred cEEEEEcCCcchHHHHHHHc-CC-EEEEEecCCCchhHHHH-HhcC--CccEEEeccCcCCCCCCcccEEEEcccccc--
Q 047630 238 RIGLDIGGGVATFAVRMMER-NI-TIVTTSMNLNGPFNNFI-ASRG--VVPLYISISQRLPFFDNTLDIVHSMHVLSN-- 310 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~-g~-~vvg~~iD~~a~~~~~a-a~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~-- 310 (392)
..|||+||++|.|+..++++ ++ .|+++++..+....... ...+ ++.+ .....-..+..+.+|+|+|..+...
T Consensus 83 ~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~-~~~~di~~l~~~~~DlVlsD~APnsG~ 161 (300)
T 3eld_A 83 GRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKF-KDKSNVFTMPTEPSDTLLCDIGESSSN 161 (300)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEE-ECSCCTTTSCCCCCSEEEECCCCCCSS
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEe-ecCceeeecCCCCcCEEeecCcCCCCC
Confidence 44599999999999999985 43 45664443211000000 0001 1122 2222223345678999999876651
Q ss_pred -cCCchhHHHHHHHHHHcccCC-cEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeE
Q 047630 311 -WIPTTLLHFLMFDIYRVLRPG-GLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLS 382 (392)
Q Consensus 311 -~~~~~~l~~~L~el~RvLKPG-G~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~yls 382 (392)
..+......+|.-+.++|+|| |.|++-.|..-.++..+ +...+++. |..+....- .- -....|.|+.
T Consensus 162 ~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~-ll~~lk~~-F~~V~~~KP--aS-R~~S~E~Y~V 230 (300)
T 3eld_A 162 PLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIE-KLERLQLR-FGGGIVRVP--FS-RNSTHEMYYI 230 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHH-HHHHHHHH-HCCEEECCT--TS-CTTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHH-HHHHHHHh-CCcEEEEeC--CC-CCCChHHeee
Confidence 111222234577778999999 99999866532334333 44455554 676665422 11 1245677763
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00044 Score=59.80 Aligned_cols=87 Identities=9% Similarity=0.134 Sum_probs=60.7
Q ss_pred CCCCcccEEEEEcCCcc-hHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCC--CcccEEEEccc
Q 047630 232 KKPGTIRIGLDIGGGVA-TFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFD--NTLDIVHSMHV 307 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG-~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d--~sFDlV~s~~~ 307 (392)
.+++++ ||||||.| ..|..|++ .|.+|+++|++..+ ++++.+|+.+ |..+ ..||+|.+...
T Consensus 34 ~~~~rV---lEVG~G~g~~vA~~La~~~g~~V~atDInp~A-----------v~~v~dDiF~-P~~~~Y~~~DLIYsirP 98 (153)
T 2k4m_A 34 GPGTRV---VEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH-----------GGIVRDDITS-PRMEIYRGAALIYSIRP 98 (153)
T ss_dssp CSSSEE---EEETCTTCCHHHHHHHHHSCCEEEEECSSCSS-----------TTEECCCSSS-CCHHHHTTEEEEEEESC
T ss_pred CCCCcE---EEEccCCChHHHHHHHHhCCCeEEEEECCccc-----------cceEEccCCC-CcccccCCcCEEEEcCC
Confidence 334566 99999999 69999998 99999998877633 2377788766 3332 37999987664
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
. .++...+.++.+. -|.-++|..+..
T Consensus 99 P------~El~~~i~~lA~~--v~adliI~pL~~ 124 (153)
T 2k4m_A 99 P------AEIHSSLMRVADA--VGARLIIKPLTG 124 (153)
T ss_dssp C------TTTHHHHHHHHHH--HTCEEEEECBTT
T ss_pred C------HHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 3 3334455666554 357788887655
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=7.4e-05 Score=72.14 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-----CCccEEEeccCcCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-----GVVPLYISISQRLP 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-----g~i~~~~~d~~~Lp 293 (392)
.+..++. +.+.+++.+ ||+|||+|.++..+++. +..++++|+| ..+.+.+.++ ..+.++++|+..++
T Consensus 15 l~e~l~~-L~~~~g~~v---LD~g~G~G~~s~~la~~~~~~~VigvD~d--~~al~~A~~~~~~~g~~v~~v~~d~~~l~ 88 (301)
T 1m6y_A 15 VREVIEF-LKPEDEKII---LDCTVGEGGHSRAILEHCPGCRIIGIDVD--SEVLRIAEEKLKEFSDRVSLFKVSYREAD 88 (301)
T ss_dssp HHHHHHH-HCCCTTCEE---EETTCTTSHHHHHHHHHCTTCEEEEEESC--HHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred HHHHHHh-cCCCCCCEE---EEEeCCcCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 3444433 334455555 99999999999999986 4788885544 4554433332 24788999988775
Q ss_pred C--C---CCcccEEEEccc
Q 047630 294 F--F---DNTLDIVHSMHV 307 (392)
Q Consensus 294 f--~---d~sFDlV~s~~~ 307 (392)
. . .++||.|++...
T Consensus 89 ~~l~~~g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 89 FLLKTLGIEKVDGILMDLG 107 (301)
T ss_dssp HHHHHTTCSCEEEEEEECS
T ss_pred HHHHhcCCCCCCEEEEcCc
Confidence 2 1 157999997543
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00034 Score=63.68 Aligned_cols=90 Identities=12% Similarity=0.068 Sum_probs=58.5
Q ss_pred cEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHH----HHHhcCC-----ccEEEeccCc---------------C
Q 047630 238 RIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNN----FIASRGV-----VPLYISISQR---------------L 292 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~----~aa~rg~-----i~~~~~d~~~---------------L 292 (392)
+.|||+||| +-+..|++. +..+++++.| ....+ ...+.|. +.++.+++.. +
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d--~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELPGKHVTSVESD--RAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp SEEEEESCS--HHHHHHHTSTTCEEEEEESC--HHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CEEEEECch--HHHHHHHHcCCCEEEEEeCC--HHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 344999985 677777775 5788885544 34443 2333343 6778887543 2
Q ss_pred C--------C-CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 293 P--------F-FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 293 p--------f-~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+ . ..++||+|+.-.-.. ...+..+.+.|+|||+++++++
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHHHHHHCSSCEEEEETTG
T ss_pred HHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHHHHHhcCCCeEEEEeCC
Confidence 2 1 237899999765321 1355667799999999999985
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.34 E-value=9.9e-05 Score=74.24 Aligned_cols=66 Identities=14% Similarity=0.059 Sum_probs=47.9
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhc--CC--ccEEEeccCcC-CC-CCCcccEEEEccc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASR--GV--VPLYISISQRL-PF-FDNTLDIVHSMHV 307 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~r--g~--i~~~~~d~~~L-pf-~d~sFDlV~s~~~ 307 (392)
|||+|||+|..+..+++.+..|+++|+| ..+.+. +... |. +.++++|+..+ +. .+++||+|++.-.
T Consensus 97 VLDLgcG~G~~al~LA~~g~~V~~VD~s--~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPP 172 (410)
T 3ll7_A 97 VVDLTGGLGIDFIALMSKASQGIYIERN--DETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPA 172 (410)
T ss_dssp EEESSCSSSHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCE
T ss_pred EEEeCCCchHHHHHHHhcCCEEEEEECC--HHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCC
Confidence 4999999999999999999999996654 344432 2222 43 78889998764 32 2468999998643
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.001 Score=65.67 Aligned_cols=131 Identities=15% Similarity=0.024 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHHHHH----hcC--------CccEEE
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNNFIA----SRG--------VVPLYI 286 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~~aa----~rg--------~i~~~~ 286 (392)
...+...++...++.+| ||+.+|.|.=+.++++.+. .+++ +|++......+. +.+ .+.+..
T Consensus 136 aS~l~~~~L~~~pg~~V---LD~CAaPGGKT~~la~~~~~~~l~A--~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~ 210 (359)
T 4fzv_A 136 ASLLPVLALGLQPGDIV---LDLCAAPGGKTLALLQTGCCRNLAA--NDLSPSRIARLQKILHSYVPEEIRDGNQVRVTS 210 (359)
T ss_dssp GGHHHHHHHCCCTTEEE---EESSCTTCHHHHHHHHTTCEEEEEE--ECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEEC
T ss_pred HHHHHHHHhCCCCCCEE---EEecCCccHHHHHHHHhcCCCcEEE--EcCCHHHHHHHHHHHHHhhhhhhccCCceEEEe
Confidence 45566677777777776 9999999999999998765 4555 566444443222 111 244555
Q ss_pred eccCcCC-CCCCcccEEEEc----c---cccccC-------Cch-------hHHHHHHHHHHcccCCcEEEEEeeccccc
Q 047630 287 SISQRLP-FFDNTLDIVHSM----H---VLSNWI-------PTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGA 344 (392)
Q Consensus 287 ~d~~~Lp-f~d~sFDlV~s~----~---~l~~~~-------~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~ 344 (392)
.|...++ ...+.||.|+.- . ....-. ... ...++|..+.+.|||||+|+.+..--..+
T Consensus 211 ~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ 290 (359)
T 4fzv_A 211 WDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL 290 (359)
T ss_dssp CCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT
T ss_pred CchhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh
Confidence 6666553 346789999953 2 111100 001 12468889999999999998887543333
Q ss_pred chHHHHHHHHHH
Q 047630 345 QLEDVYVPLIES 356 (392)
Q Consensus 345 ~l~~~l~~ll~~ 356 (392)
+-++.+...+++
T Consensus 291 ENE~vV~~~L~~ 302 (359)
T 4fzv_A 291 QNEYVVQGAIEL 302 (359)
T ss_dssp TTHHHHHHHHHH
T ss_pred hCHHHHHHHHHh
Confidence 434445555543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0018 Score=61.92 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=81.0
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc-------CCEEEEEecCCCc----------h--------------h
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER-------NITIVTTSMNLNG----------P--------------F 272 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-------g~~vvg~~iD~~a----------~--------------~ 272 (392)
++..+......+.| ||+|+..|..+..|++. +.+++++|..-.. + .
T Consensus 97 l~~~v~~~~~pg~I---lEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~ 173 (282)
T 2wk1_A 97 CVEDVIGNNVPGDL---VETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVS 173 (282)
T ss_dssp HHHHHHHTTCCCEE---EEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCC
T ss_pred HHHHHHhcCCCCcE---EEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhH
Confidence 34444433333555 99999999988777651 5678886643110 0 0
Q ss_pred ----HHHHHhcC----CccEEEeccCc-CC-CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 273 ----NNFIASRG----VVPLYISISQR-LP-FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 273 ----~~~aa~rg----~i~~~~~d~~~-Lp-f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
.+...+.| .+.++.+++.+ +| +++++||+|+.-.-. .+.....|..+.+.|+|||+++++++..
T Consensus 174 ~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-----y~~~~~~Le~~~p~L~pGGiIv~DD~~~- 247 (282)
T 2wk1_A 174 EEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-----YESTWDTLTNLYPKVSVGGYVIVDDYMM- 247 (282)
T ss_dssp HHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-----HHHHHHHHHHHGGGEEEEEEEEESSCTT-
T ss_pred HHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-----cccHHHHHHHHHhhcCCCEEEEEcCCCC-
Confidence 11223323 37788887543 44 335789999976432 1233468899999999999999999843
Q ss_pred ccchHHHHHHHHHHcCCe
Q 047630 343 GAQLEDVYVPLIESVGFN 360 (392)
Q Consensus 343 ~~~l~~~l~~ll~~aGf~ 360 (392)
+....+.+.+..++.|.+
T Consensus 248 ~~G~~~Av~Ef~~~~~i~ 265 (282)
T 2wk1_A 248 CPPCKDAVDEYRAKFDIA 265 (282)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhcCCc
Confidence 233455688888887743
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0046 Score=66.82 Aligned_cols=117 Identities=7% Similarity=-0.037 Sum_probs=67.6
Q ss_pred EEEEEcCCcchHHHHHHHcC-----CEEEEEecCCCchhHHHH--H---h-----cCC--ccEEEeccCcC-CCCCCccc
Q 047630 239 IGLDIGGGVATFAVRMMERN-----ITIVTTSMNLNGPFNNFI--A---S-----RGV--VPLYISISQRL-PFFDNTLD 300 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g-----~~vvg~~iD~~a~~~~~a--a---~-----rg~--i~~~~~d~~~L-pf~d~sFD 300 (392)
+|||.|||+|.++..+++.. ..++|+|+|. .....+ . . .+. ..+...+.... +...+.||
T Consensus 324 rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp--~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 324 VISDPAAGSGNLLATVSAGFNNVMPRQIWANDIET--LFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp EEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCG--GGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred EEEECCCCccHHHHHHHHHhcccCCCeEEEEECCH--HHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 45999999999999988743 3678855554 333322 1 1 121 12333344332 23457899
Q ss_pred EEEEcccccc-cCCch-------------------------hHHHHHHHHHHcccCCcEEEEEeecc---cccchHHHHH
Q 047630 301 IVHSMHVLSN-WIPTT-------------------------LLHFLMFDIYRVLRPGGLFWLDHFFC---VGAQLEDVYV 351 (392)
Q Consensus 301 lV~s~~~l~~-~~~~~-------------------------~l~~~L~el~RvLKPGG~lii~~~~~---~~~~l~~~l~ 351 (392)
+|+++-.+.. ..... ....++..+.+.|||||++.+..... ......+.++
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLR 481 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFR 481 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHH
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHH
Confidence 9999966632 11111 12347888999999999997665321 1122234466
Q ss_pred HHHHHc
Q 047630 352 PLIESV 357 (392)
Q Consensus 352 ~ll~~a 357 (392)
+.+.+.
T Consensus 482 k~LLe~ 487 (878)
T 3s1s_A 482 EFLVGN 487 (878)
T ss_dssp HHHTTT
T ss_pred HHHHhC
Confidence 665543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.003 Score=60.54 Aligned_cols=136 Identities=14% Similarity=0.053 Sum_probs=80.6
Q ss_pred CCCcccEEEEEcC------CcchHH-HHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEc
Q 047630 233 KPGTIRIGLDIGG------GVATFA-VRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 233 ~~~~ir~VLDIGC------GtG~~a-~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.+.+| ||+|+ -.|.+. ..+...|..++++|+.. ... ..--++++|...+.. .+.||+|+|-
T Consensus 109 ~gmrV---LDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~---~~s-----da~~~IqGD~~~~~~-~~k~DLVISD 176 (344)
T 3r24_A 109 YNMRV---IHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLND---FVS-----DADSTLIGDCATVHT-ANKWDLIISD 176 (344)
T ss_dssp TTCEE---EEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSC---CBC-----SSSEEEESCGGGEEE-SSCEEEEEEC
T ss_pred CCCEE---EeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcc---ccc-----CCCeEEEcccccccc-CCCCCEEEec
Confidence 34555 99996 456632 22322345677755443 211 111347888765443 4789999986
Q ss_pred ccccc--cCCc------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCccc
Q 047630 306 HVLSN--WIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELR 377 (392)
Q Consensus 306 ~~l~~--~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~ 377 (392)
.+-.- ..+. .-.+.++.=+.++|+|||.|++-.|...+. +.+.++.+ -|+.++... . .-+ .+..
T Consensus 177 MAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~---~~L~~lrk--~F~~VK~fK-~-ASR-a~Ss 248 (344)
T 3r24_A 177 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN---ADLYKLMG--HFSWWTAFV-T-NVN-ASSS 248 (344)
T ss_dssp CCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC---HHHHHHHT--TEEEEEEEE-E-GGG-TTSS
T ss_pred CCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH---HHHHHHHh--hCCeEEEEC-C-CCC-CCCe
Confidence 44321 0111 124556666778999999999998877663 33555554 488887774 2 111 3567
Q ss_pred ceeeEEEEEcC
Q 047630 378 EMYLSALLEKP 388 (392)
Q Consensus 378 e~ylsai~~Kp 388 (392)
|+|+.++-.|-
T Consensus 249 EvYLVG~gfKg 259 (344)
T 3r24_A 249 EAFLIGANYLG 259 (344)
T ss_dssp CEEEEEEEECS
T ss_pred eEEEEeeeccC
Confidence 99987665553
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0055 Score=58.82 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=75.8
Q ss_pred cccEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHh-----------cCCccEEEeccCcC-CCCCCcccE
Q 047630 236 TIRIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIAS-----------RGVVPLYISISQRL-PFFDNTLDI 301 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~-----------rg~i~~~~~d~~~L-pf~d~sFDl 301 (392)
+.+.||=||.|.|..+..+.+. + ..++.+++|. ...+.+.+ ...++++.+|...+ .-..++||+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~--~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDA--GVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCH--HHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCH--HHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 4455699999999999999985 2 4677756554 33332111 12367888886553 445688999
Q ss_pred EEEcccccccCCchh--HHHHHHHHHHcccCCcEEEEEe--ecccccchHHHHHHHHHHcCCeEEEE
Q 047630 302 VHSMHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLDH--FFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 302 V~s~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~~--~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
|+.-.. ....+... -..+++.++|+|+|||+++... .+...+.... +.+.+++. |..+..
T Consensus 161 Ii~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~-~~~~l~~~-F~~v~~ 224 (294)
T 3o4f_A 161 IISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAID-SHRKLSHY-FSDVGF 224 (294)
T ss_dssp EEESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHH-HHHHHHHH-CSEEEE
T ss_pred EEEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHH-HHHHHHhh-CCceee
Confidence 997532 11111111 1358999999999999998753 2222333333 33445555 555543
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0014 Score=62.79 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=68.3
Q ss_pred EEEEEcCCcchHHHHHHH-cCCE-EEEEecCCCchhHH---HHHhc--CCccEEEe-ccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMME-RNIT-IVTTSMNLNGPFNN---FIASR--GVVPLYIS-ISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~-~g~~-vvg~~iD~~a~~~~---~aa~r--g~i~~~~~-d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||+||++|.++.+.+. .++. |+| +|+.....+ .+... .++.+..+ |+..++- ..+|+|+|--.=..
T Consensus 97 ~VlDLGaapGGwsq~~~~~~gv~~V~a--vdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDigeSs 172 (321)
T 3lkz_A 97 KVIDLGCGRGGWCYYMATQKRVQEVRG--YTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIGESS 172 (321)
T ss_dssp EEEEETCTTCHHHHHHTTCTTEEEEEE--ECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCCCCC
T ss_pred EEEEeCCCCCcHHHHHHhhcCCCEEEE--EEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECccCC
Confidence 359999999999997777 4554 777 445332111 00111 13566666 6666653 56999999765211
Q ss_pred ---cCCchhHHHHHHHHHHcccCC-cEEEEEeecccccchHHHHHHHHHHcC
Q 047630 311 ---WIPTTLLHFLMFDIYRVLRPG-GLFWLDHFFCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 311 ---~~~~~~l~~~L~el~RvLKPG-G~lii~~~~~~~~~l~~~l~~ll~~aG 358 (392)
..+......+|.-+.+.|++| |-|++-.+....++..+.+..+-...|
T Consensus 173 ~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fg 224 (321)
T 3lkz_A 173 SSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYG 224 (321)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHC
T ss_pred CChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhC
Confidence 111112223677778899999 888886554434444443444444433
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.005 Score=57.27 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=72.0
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cCCE-EEEEecCCCchhHH---HHHhc--CCccEEEe-ccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RNIT-IVTTSMNLNGPFNN---FIASR--GVVPLYIS-ISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~-vvg~~iD~~a~~~~---~aa~r--g~i~~~~~-d~~~Lpf~d~sFDlV 302 (392)
+.+++. |||+||++|.++.+.+. .++. |++ +|+.....+ ..... +.+.|..+ |+..++- ..+|.|
T Consensus 76 l~~g~~---VvDLGaapGGWSq~~a~~~g~~~V~a--vdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~Dtl 148 (267)
T 3p8z_A 76 VIPEGR---VIDLGCGRGGWSYYCAGLKKVTEVRG--YTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKCDTL 148 (267)
T ss_dssp SCCCEE---EEEESCTTSHHHHHHHTSTTEEEEEE--ECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCCSEE
T ss_pred CCCCCE---EEEcCCCCCcHHHHHHHhcCCCEEEE--EecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccccEE
Confidence 445444 49999999999997777 4554 677 555333221 11122 24788888 7776653 669999
Q ss_pred EEcccccccC---CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC
Q 047630 303 HSMHVLSNWI---PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 303 ~s~~~l~~~~---~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG 358 (392)
+|-..-..-. +......+|+-+.+.|++ |-|++-.+.....+..+.+..+-...|
T Consensus 149 lcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~fg 206 (267)
T 3p8z_A 149 LCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKHG 206 (267)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHhC
Confidence 9986653311 111222367777899998 788886554444444343444444433
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0093 Score=59.16 Aligned_cols=124 Identities=10% Similarity=0.085 Sum_probs=71.7
Q ss_pred ccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHhc--------------CCccEEEeccCcC----CCCCC
Q 047630 237 IRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIASR--------------GVVPLYISISQRL----PFFDN 297 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~r--------------g~i~~~~~d~~~L----pf~d~ 297 (392)
.+.||=||.|.|..+..+.+.. ..++.+++| ....+.+.+. ..++++.+|+..+ .-..+
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~~~V~~VEID--p~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKPKMVTMVEID--QMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCCSEEEEEESC--HHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCeEEEECCCcHHHHHHHHhcCCceeEEEccC--HHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 3566999999999999998854 356665544 3444333221 1145666775432 12346
Q ss_pred cccEEEEccccccc-CC----c--hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 298 TLDIVHSMHVLSNW-IP----T--TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 298 sFDlV~s~~~l~~~-~~----~--~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
+||+|+.-..-... .+ . .--+.+++.++++|+|||+++...-.....+....+.+.+++. |..+.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v-F~~v~ 355 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL-YCPVE 355 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS-SSCEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh-CCcce
Confidence 89999975321100 00 1 1124678999999999999987532111112234466667776 44443
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.035 Score=53.49 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=47.9
Q ss_pred cEEEeccCc-CC-CCCCcccEEEEcccccccCCch-hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCC
Q 047630 283 PLYISISQR-LP-FFDNTLDIVHSMHVLSNWIPTT-LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGF 359 (392)
Q Consensus 283 ~~~~~d~~~-Lp-f~d~sFDlV~s~~~l~~~~~~~-~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf 359 (392)
.+..+|+.. ++ +.+..||+|+.-. +..-..++ --+.+++.++|.++|||.|.- ++.. ..+++.|.++||
T Consensus 169 ~l~~GDa~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT---Ytaa----g~VRR~L~~aGF 240 (308)
T 3vyw_A 169 KVLLGDARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS---YSSS----LSVRKSLLTLGF 240 (308)
T ss_dssp EEEESCHHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE---SCCC----HHHHHHHHHTTC
T ss_pred EEEechHHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE---EeCc----HHHHHHHHHCCC
Confidence 456677543 33 2345799998742 22212222 124799999999999999863 3322 337779999999
Q ss_pred eEEEEE
Q 047630 360 NKLKWV 365 (392)
Q Consensus 360 ~~i~w~ 365 (392)
++-+-.
T Consensus 241 ~V~k~~ 246 (308)
T 3vyw_A 241 KVGSSR 246 (308)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 976644
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.01 Score=56.59 Aligned_cols=79 Identities=14% Similarity=0.025 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh--cCCccEEEeccCcCCC----
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS--RGVVPLYISISQRLPF---- 294 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~--rg~i~~~~~d~~~Lpf---- 294 (392)
.+..++.+ .+.+++.+ ||.+||.|..+..+++++..++|+|.|. ...+.+.+ .+.+.+++++...++.
T Consensus 11 l~e~le~L-~~~~gg~~---VD~T~G~GGHS~~il~~~g~VigiD~Dp--~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 11 YQEALDLL-AVRPGGVY---VDATLGGAGHARGILERGGRVIGLDQDP--EAVARAKGLHLPGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp HHHHHHHH-TCCTTCEE---EETTCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHTCCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHhh-CCCCCCEE---EEeCCCCcHHHHHHHHCCCEEEEEeCCH--HHHHHHHhhccCCEEEEECCcchHHHHHHH
Confidence 34444433 35555555 9999999999999999877899966554 34333322 1346788888776631
Q ss_pred -CCCcccEEEEc
Q 047630 295 -FDNTLDIVHSM 305 (392)
Q Consensus 295 -~d~sFDlV~s~ 305 (392)
..++||.|++.
T Consensus 85 ~g~~~vDgIL~D 96 (285)
T 1wg8_A 85 LGVERVDGILAD 96 (285)
T ss_dssp TTCSCEEEEEEE
T ss_pred cCCCCcCEEEeC
Confidence 23579999863
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.024 Score=53.97 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=53.6
Q ss_pred ccEEEeccCc-CC-CCCCcccEEEEcccccccCCc-----------------hhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 282 VPLYISISQR-LP-FFDNTLDIVHSMHVLSNWIPT-----------------TLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 282 i~~~~~d~~~-Lp-f~d~sFDlV~s~~~l~~~~~~-----------------~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
+.++++|+.. ++ +++++||+|++.-.+....+. ..+..++.++.|+|||||.+++..-...
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~ 101 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVA 101 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEE
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 5678888665 32 467899999998665321110 1134678899999999999977642110
Q ss_pred ------c----cchHHHHHHHHHHcCCeEEE
Q 047630 343 ------G----AQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 343 ------~----~~l~~~l~~ll~~aGf~~i~ 363 (392)
. -.+...+..+++++||....
T Consensus 102 ~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 102 VARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred cccccCCcccccccHHHHHHHHHHcCCeeec
Confidence 0 11234577788999997755
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.039 Score=57.08 Aligned_cols=139 Identities=16% Similarity=0.094 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH----c-----------CCEEEEEecCCCchhHH----HHHhcCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME----R-----------NITIVTTSMNLNGPFNN----FIASRGV 281 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~----~-----------g~~vvg~~iD~~a~~~~----~aa~rg~ 281 (392)
+-.++.+++...++.+| +|-+||+|.|.....+ . ...++|.++|. .... .+.-+|.
T Consensus 205 Vv~lmv~l~~p~~~~~I---~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~--~~~~la~mNl~lhg~ 279 (530)
T 3ufb_A 205 VVRFMVEVMDPQLGESV---LDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKS--LPYLLVQMNLLLHGL 279 (530)
T ss_dssp HHHHHHHHHCCCTTCCE---EETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSH--HHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhccCCCCEE---EeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccH--HHHHHHHHHHHhcCC
Confidence 34444445544444455 9999999999876554 1 24577755443 2222 2222342
Q ss_pred --ccEEEeccCcCCC----CCCcccEEEEcccccccCC-------------chhHHHHHHHHHHccc-------CCcEEE
Q 047630 282 --VPLYISISQRLPF----FDNTLDIVHSMHVLSNWIP-------------TTLLHFLMFDIYRVLR-------PGGLFW 335 (392)
Q Consensus 282 --i~~~~~d~~~Lpf----~d~sFDlV~s~~~l~~~~~-------------~~~l~~~L~el~RvLK-------PGG~li 335 (392)
..+..+|....|. ....||+|+++-.+..-.. ...--.++..+.+.|| |||++.
T Consensus 280 ~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~a 359 (530)
T 3ufb_A 280 EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAA 359 (530)
T ss_dssp SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEE
T ss_pred ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEE
Confidence 3456666555443 2357999999976632110 0111246677777776 799986
Q ss_pred EEeecc--cccchHHHHHHHHHHcCCeEEEEE
Q 047630 336 LDHFFC--VGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 336 i~~~~~--~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+..... ........+++.+-+. +......
T Consensus 360 vVlP~g~Lf~~~~~~~iRk~Lle~-~~l~aII 390 (530)
T 3ufb_A 360 VVVPNGTLFSDGISARIKEELLKN-FNLHTIV 390 (530)
T ss_dssp EEEEHHHHHCCTHHHHHHHHHHHH-SEEEEEE
T ss_pred EEecchhhhccchHHHHHHHHhhc-CEEEEEE
Confidence 664311 1122223355555443 3444443
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.11 Score=50.48 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=80.1
Q ss_pred EEEEEcCCcchHHHHHHHcCC--E-EEEEecCCCchhHHHHHhc-CCccEEEeccCcCCC---CCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI--T-IVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPF---FDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~--~-vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf---~d~sFDlV~s~~~l~~~ 311 (392)
+|+|+-||.|.++..+.+.|. + +.+ +|++....+....+ ....++.+|+..+.. +...+|+|+....-..+
T Consensus 4 ~v~dLFaG~Gg~~~g~~~~G~~~~~v~~--~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 4 RVLELYSGVGGMHHALRESCIPAQVVAA--IDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEE--ECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred eEEEeCcCccHHHHHHHHCCCCceEEEE--EeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 359999999999999999883 3 555 55533444433333 234577888877642 11258999987553322
Q ss_pred CC-------chhHHHHHHHHHHcc---c--CCcEEEEEeeccc-ccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Ccc
Q 047630 312 IP-------TTLLHFLMFDIYRVL---R--PGGLFWLDHFFCV-GAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PEL 376 (392)
Q Consensus 312 ~~-------~~~l~~~L~el~RvL---K--PGG~lii~~~~~~-~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~ 376 (392)
.. .+....++.++.|++ + |. +|++.....- .....+.+.+.+++.||.. .|.+....+.| ...
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~-~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v-~~~vl~a~~~GvPQ~R 159 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQY-QEFLLSPTSLGIPNSR 159 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEE-EEEEECGGGGTCSCCC
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCCC-EEEEeCCccccCHHHHHHHHHHHHHCCCee-EEEEEEHHHCCCCCcc
Confidence 11 011112455444444 4 54 5555554331 1233455788889999864 67767665553 345
Q ss_pred cceeeEEE
Q 047630 377 REMYLSAL 384 (392)
Q Consensus 377 ~e~ylsai 384 (392)
..+|+.+.
T Consensus 160 ~R~~iv~~ 167 (343)
T 1g55_A 160 LRYFLIAK 167 (343)
T ss_dssp CEEEEEEE
T ss_pred cEEEEEEE
Confidence 55666443
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.26 Score=48.67 Aligned_cols=141 Identities=12% Similarity=0.064 Sum_probs=82.7
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCC--------CCCcccEEEEcccccc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPF--------FDNTLDIVHSMHVLSN 310 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf--------~d~sFDlV~s~~~l~~ 310 (392)
++|+-||.|.++..+.+.|.+++. .+|++....+....+ ....++.+|+..+.. ....+|+|+....-..
T Consensus 5 vidLFsG~GGlslG~~~aG~~~v~-avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ~ 83 (376)
T 3g7u_A 5 VIDLFSGVGGLSLGAARAGFDVKM-AVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQG 83 (376)
T ss_dssp EEEETCTTSHHHHHHHHHTCEEEE-EECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCCT
T ss_pred EEEEccCcCHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCCC
Confidence 499999999999999999987652 355533443333322 234677788776632 2457999998754332
Q ss_pred cC------CchhHHHHHHH---HHHcccCCcEEEEEeecc----cccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Cc
Q 047630 311 WI------PTTLLHFLMFD---IYRVLRPGGLFWLDHFFC----VGAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PE 375 (392)
Q Consensus 311 ~~------~~~~l~~~L~e---l~RvLKPGG~lii~~~~~----~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~ 375 (392)
+. ..+....++.+ +.+.+||. +|++..... ......+.+. .+++.||..+.|.+....+.| ..
T Consensus 84 fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~-~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v~~~~vl~a~dyGvPQ~ 161 (376)
T 3g7u_A 84 FSSIGKGNPDDSRNQLYMHFYRLVSELQPL-FFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDYGAPTI 161 (376)
T ss_dssp TC-------CHHHHHHHHHHHHHHHHHCCS-EEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEECCCEEEEGGGGTCSBC
T ss_pred cccccCCCCCCchHHHHHHHHHHHHHhCCC-EEEEecchHhhccCcHHHHHHHH-HHHcCCCccCcEEEEEHhhCCCCCC
Confidence 21 01111234444 44455774 445554322 1223345566 889999987677777766654 34
Q ss_pred ccceeeEE
Q 047630 376 LREMYLSA 383 (392)
Q Consensus 376 ~~e~ylsa 383 (392)
...+|+.+
T Consensus 162 R~R~~iig 169 (376)
T 3g7u_A 162 RTRYFFIG 169 (376)
T ss_dssp CEEEEEEE
T ss_pred CcEEEEEE
Confidence 44555544
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.15 Score=49.60 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=65.3
Q ss_pred ccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhc-----------------------CCccEEEecc
Q 047630 237 IRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASR-----------------------GVVPLYISIS 289 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~r-----------------------g~i~~~~~d~ 289 (392)
.+.|+.+|||....+.++...+..+..+++|. +...+ .+.+. ....++-.|.
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 34569999999999999988544555556776 43333 11121 1234555565
Q ss_pred CcCC--------C-CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 290 QRLP--------F-FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 290 ~~Lp--------f-~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.+.. . ..+...++++-.++.. .+++....+++.+.+.. |+|.+++.+...
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~Y-L~~~~~~~ll~~ia~~~-~~~~~v~~e~i~ 235 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCY-MHNNESQLLINTIMSKF-SHGLWISYDPIG 235 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGG-SCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhC-CCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence 4421 1 2245677777777765 67788889999998877 788776555443
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.79 Score=43.54 Aligned_cols=138 Identities=9% Similarity=0.141 Sum_probs=83.0
Q ss_pred EEEEcCCcchHHHHHHHcCCEEE-EEecCCCchhHHHHHhcCCccEEEeccCcCCCC-CCcccEEEEccccccc------
Q 047630 240 GLDIGGGVATFAVRMMERNITIV-TTSMNLNGPFNNFIASRGVVPLYISISQRLPFF-DNTLDIVHSMHVLSNW------ 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vv-g~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~------ 311 (392)
|||+=||.|.+..-|.+.|.+++ ++++|. ...+....+---.++.+|+..+... -..+|+++....-..+
T Consensus 3 vidLFsG~GG~~~G~~~aG~~~v~a~e~d~--~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~ 80 (331)
T 3ubt_Y 3 LISLFSGAGGLDLGFQKAGFRIICANEYDK--SIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSL 80 (331)
T ss_dssp EEEESCTTCHHHHHHHHTTCEEEEEEECCT--TTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEE
T ss_pred EEEeCcCccHHHHHHHHCCCEEEEEEeCCH--HHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCc
Confidence 59999999999999999998865 455544 3333322322235677887776431 1358999876433221
Q ss_pred ---CCchhHHHHHHH---HHHcccCCcEEEEEeecc----cccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Ccccce
Q 047630 312 ---IPTTLLHFLMFD---IYRVLRPGGLFWLDHFFC----VGAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREM 379 (392)
Q Consensus 312 ---~~~~~l~~~L~e---l~RvLKPGG~lii~~~~~----~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~ 379 (392)
.++.. .++.+ +.+.+||. +|++..... ......+.+.+.+++.||. +.|.+....+.| +....+
T Consensus 81 ~g~~d~R~--~L~~~~~r~i~~~~Pk-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~-v~~~vlna~~yGvPQ~R~Rv 156 (331)
T 3ubt_Y 81 RGIDDPRG--KLFYEYIRILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD-VHIILLNANDYGVAQDRKRV 156 (331)
T ss_dssp CCTTCGGG--HHHHHHHHHHHHHCCS-EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEE-EEEEEEEGGGTTCSBCCEEE
T ss_pred cCCCCchh--HHHHHHHHHHhccCCe-EEEeeeecccccccccchhhhhhhhhccCCcE-EEEEecccccCCCCcccceE
Confidence 12221 34444 44456785 555555421 2233455677889999987 567777766664 344556
Q ss_pred eeEE
Q 047630 380 YLSA 383 (392)
Q Consensus 380 ylsa 383 (392)
|+.+
T Consensus 157 fivg 160 (331)
T 3ubt_Y 157 FYIG 160 (331)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6644
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.81 E-value=0.32 Score=46.97 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=79.1
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCC-CCcccEEEEcccccccC----
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFF-DNTLDIVHSMHVLSNWI---- 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~---- 312 (392)
+++|+.||.|.++..+.+.|.+++. .+|++....+....+ .... .+|+..+... -..+|+|+.......+.
T Consensus 13 ~~~dLFaG~Gg~~~g~~~aG~~~v~-~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~ 89 (327)
T 2c7p_A 13 RFIDLFAGLGGFRLALESCGAECVY-SNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSISGK 89 (327)
T ss_dssp EEEEETCTTTHHHHHHHHTTCEEEE-EECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCTTSC
T ss_pred cEEEECCCcCHHHHHHHHCCCeEEE-EEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcchhcc
Confidence 3499999999999999999987543 345533333322222 1111 5676655321 12589999874443321
Q ss_pred -----C-chhHHHHHHHHHHcccCCcEEEEEeeccc----ccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Cccccee
Q 047630 313 -----P-TTLLHFLMFDIYRVLRPGGLFWLDHFFCV----GAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREMY 380 (392)
Q Consensus 313 -----~-~~~l~~~L~el~RvLKPGG~lii~~~~~~----~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~y 380 (392)
+ +..+-.-+.++.+.+||. +|++.....- .....+.+.+.+++.||. +.|.+....+.| .....+|
T Consensus 90 ~~g~~d~r~~L~~~~~r~i~~~~P~-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~~GvPQ~R~R~~ 167 (327)
T 2c7p_A 90 QKGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYS-FHAKVLNALDYGIPQKRERIY 167 (327)
T ss_dssp CCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBC-CEEEEEEGGGGTCSBCCEEEE
T ss_pred cCCCcchhhHHHHHHHHHHHhccCc-EEEEeCcHHHHhccccHHHHHHHHHHHhCCCE-EEEEEEEHHHcCCCccceEEE
Confidence 1 112212233344456784 5556654321 223455688888999997 567777665554 3444566
Q ss_pred eEE
Q 047630 381 LSA 383 (392)
Q Consensus 381 lsa 383 (392)
+.+
T Consensus 168 iv~ 170 (327)
T 2c7p_A 168 MIC 170 (327)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.033 Score=52.99 Aligned_cols=47 Identities=9% Similarity=-0.012 Sum_probs=33.3
Q ss_pred HHHHHHHhh--CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH
Q 047630 223 FSIDEVLAT--KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN 274 (392)
Q Consensus 223 ~lI~~ll~l--~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~ 274 (392)
.+++.++.. .+++. |||++||+|..+..+++.|..++|+++| ....+
T Consensus 223 ~l~~~~i~~~~~~~~~---vlD~f~GsGt~~~~a~~~g~~~~g~e~~--~~~~~ 271 (297)
T 2zig_A 223 ELAERLVRMFSFVGDV---VLDPFAGTGTTLIAAARWGRRALGVELV--PRYAQ 271 (297)
T ss_dssp HHHHHHHHHHCCTTCE---EEETTCTTTHHHHHHHHTTCEEEEEESC--HHHHH
T ss_pred HHHHHHHHHhCCCCCE---EEECCCCCCHHHHHHHHcCCeEEEEeCC--HHHHH
Confidence 455555443 23444 4999999999999999999999995554 34444
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.11 Score=50.07 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=52.8
Q ss_pred ccEEEeccCc-CC-CCCCcccEEEEcccccccCC-----------chhHHHHHHHHHHcccCCcEEEEEeecc--ccc--
Q 047630 282 VPLYISISQR-LP-FFDNTLDIVHSMHVLSNWIP-----------TTLLHFLMFDIYRVLRPGGLFWLDHFFC--VGA-- 344 (392)
Q Consensus 282 i~~~~~d~~~-Lp-f~d~sFDlV~s~~~l~~~~~-----------~~~l~~~L~el~RvLKPGG~lii~~~~~--~~~-- 344 (392)
..++++|+.. +. +++++||+|++.-.+..-.+ ...+..++.++.|+|||||.+++..-.. ...
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~ 94 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA 94 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence 4567777543 33 45789999999855432110 0246678999999999999998864322 111
Q ss_pred ---chHHHHHHHHHHcCCeEEE
Q 047630 345 ---QLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 345 ---~l~~~l~~ll~~aGf~~i~ 363 (392)
.....+.++++++||..+.
T Consensus 95 ~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 95 RSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp ECCHHHHHHHHHHHTTCCEEEE
T ss_pred cccchHHHHHHHHHhCCCEEEE
Confidence 1123455678899997654
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.9 Score=43.88 Aligned_cols=140 Identities=9% Similarity=0.110 Sum_probs=82.2
Q ss_pred EEEEEcCCcchHHHHHHHcCC--EEE--EEecCCCchhHHHHHhc-CCccEEEeccCcCCC---CCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI--TIV--TTSMNLNGPFNNFIASR-GVVPLYISISQRLPF---FDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~--~vv--g~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf---~d~sFDlV~s~~~l~~ 310 (392)
+++|+-||.|.+...+.+.|. +++ + +|++....+....+ +. .++.+|+..+.. +...+|+++....-..
T Consensus 12 ~vidLFaG~GG~~~G~~~aG~~~~~v~~a--~e~d~~a~~ty~~N~~~-~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~ 88 (327)
T 3qv2_A 12 NVIEFFSGIGGLRSSYERSSININATFIP--FDINEIANKIYSKNFKE-EVQVKNLDSISIKQIESLNCNTWFMSPPCQP 88 (327)
T ss_dssp EEEEETCTTTHHHHHHHHSSCCCCEEEEE--ECCCHHHHHHHHHHHCC-CCBCCCTTTCCHHHHHHTCCCEEEECCCCTT
T ss_pred EEEEECCChhHHHHHHHHcCCCceEEEEE--EECCHHHHHHHHHHCCC-CcccCChhhcCHHHhccCCCCEEEecCCccC
Confidence 359999999999999999884 544 6 45533333322222 22 245677776642 2236899998755443
Q ss_pred c---------CCchhHHHHHHHHHH-ccc-----CCcEEEEEeeccc-ccchHHHHHHHHHHcCCeEEEEEEeeccCCC-
Q 047630 311 W---------IPTTLLHFLMFDIYR-VLR-----PGGLFWLDHFFCV-GAQLEDVYVPLIESVGFNKLKWVVGRKLDRG- 373 (392)
Q Consensus 311 ~---------~~~~~l~~~L~el~R-vLK-----PGG~lii~~~~~~-~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~- 373 (392)
+ ...+....++.++.| +++ | -++++.....- .....+.+.+.+++.||. +.|.+....+.|
T Consensus 89 fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P-~~~~lENV~gl~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~yGv 166 (327)
T 3qv2_A 89 YNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKP-KHIFIENVPLFKESLVFKEIYNILIKNQYY-IKDIICSPIDIGI 166 (327)
T ss_dssp CSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCC-SEEEEEECGGGGGSHHHHHHHHHHHHTTCE-EEEEEECGGGGTC
T ss_pred cccccCCCCCCCccccchhHHHHHHHHHHHhccCC-CEEEEEchhhhcChHHHHHHHHHHHhCCCE-EEEEEEeHHHcCC
Confidence 3 001122246777777 554 4 35555554322 223456688889999997 567777665554
Q ss_pred -CcccceeeEE
Q 047630 374 -PELREMYLSA 383 (392)
Q Consensus 374 -~~~~e~ylsa 383 (392)
.....+|+.+
T Consensus 167 PQ~R~R~fivg 177 (327)
T 3qv2_A 167 PNSRTRYYVMA 177 (327)
T ss_dssp SBCCCEEEEEE
T ss_pred CccceEEEEEE
Confidence 3344555533
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.31 Score=46.83 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=60.3
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
.+.++.++ |-+|+|. |..+..+++ .|.+|++++ .+....+.+.+.|.-.++ .+...+ . ..+|+|+-.-.
T Consensus 173 ~~~~g~~V---lV~GaG~vG~~a~qla~~~Ga~Vi~~~--~~~~~~~~~~~lGa~~v~-~~~~~~--~-~~~D~vid~~g 243 (348)
T 3two_A 173 KVTKGTKV---GVAGFGGLGSMAVKYAVAMGAEVSVFA--RNEHKKQDALSMGVKHFY-TDPKQC--K-EELDFIISTIP 243 (348)
T ss_dssp TCCTTCEE---EEESCSHHHHHHHHHHHHTTCEEEEEC--SSSTTHHHHHHTTCSEEE-SSGGGC--C-SCEEEEEECCC
T ss_pred CCCCCCEE---EEECCcHHHHHHHHHHHHCCCeEEEEe--CCHHHHHHHHhcCCCeec-CCHHHH--h-cCCCEEEECCC
Confidence 45566666 8889875 778888877 788988854 434566666677743333 333222 1 27999986543
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
-. ..+....+.|++||.+++...
T Consensus 244 ~~---------~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 244 TH---------YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp SC---------CCHHHHHTTEEEEEEEEECCC
T ss_pred cH---------HHHHHHHHHHhcCCEEEEECC
Confidence 21 135788899999999987643
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.051 Score=65.88 Aligned_cols=95 Identities=13% Similarity=0.066 Sum_probs=37.6
Q ss_pred EEEEEcCCcchHHHHHHHc-C------CEEEEEecCCCchhHHHHHhcC-CccEEEe--ccCc-CCCCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMER-N------ITIVTTSMNLNGPFNNFIASRG-VVPLYIS--ISQR-LPFFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g------~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~--d~~~-Lpf~d~sFDlV~s~~~ 307 (392)
.||+||.|+|..+..+.+. + ...+.+|++ +.+.+.+.++- ...+... |.+. -++...+||+|++..+
T Consensus 1243 ~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s--~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1243 KVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRN--PQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSS--SSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred eEEEECCCccHHHHHHHHhhcccCcccceEEEecCC--hHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 3599999999865544331 1 134444444 33322222210 0112221 2222 1345567999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+|.. .++...|.++.+.|||||++++.+
T Consensus 1321 l~~t---~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1321 LATL---GDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp -----------------------CCEEEEEE
T ss_pred cccc---ccHHHHHHHHHHhcCCCcEEEEEe
Confidence 9654 344568999999999999998865
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=91.70 E-value=1.5 Score=42.33 Aligned_cols=140 Identities=10% Similarity=0.094 Sum_probs=80.2
Q ss_pred EEEEcCCcchHHHHHHHcCC--E-EEEEecCCCchhHHHHHhc-CCccEEEeccCcCCC---CCCcccEEEEcccccccC
Q 047630 240 GLDIGGGVATFAVRMMERNI--T-IVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPF---FDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~--~-vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf---~d~sFDlV~s~~~l~~~~ 312 (392)
++|+-||.|.+...+.+.|. + +.+ +|++....+....+ +...++.+|+..+.. +...+|+++....-..+.
T Consensus 6 ~idLFaG~GG~~~G~~~aG~~~~~v~a--~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 6 ILELYSGIGGMHCAWKESGLDGEIVAA--VDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEETCTTTHHHHHHHHHTCSEEEEEE--ECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred EEEECcCccHHHHHHHHcCCCceEEEE--EeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 59999999999999988886 4 345 55533333322222 234567788777642 223689999764433221
Q ss_pred ------C-chhHHHHHHHHHHcc---c-CCcEEEEEeeccc-ccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Ccccc
Q 047630 313 ------P-TTLLHFLMFDIYRVL---R-PGGLFWLDHFFCV-GAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELRE 378 (392)
Q Consensus 313 ------~-~~~l~~~L~el~RvL---K-PGG~lii~~~~~~-~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e 378 (392)
. .+....++.++.|++ + | -++++.....- .....+.+.+.+++.||.. .|.+....+.| .....
T Consensus 84 ~ag~~~~~~d~r~~L~~~~~r~i~~~~~P-~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v-~~~vl~a~~~GvPQ~R~R 161 (333)
T 4h0n_A 84 RNGKYLDDNDPRTNSFLYLIGILDQLDNV-DYILMENVKGFENSTVRNLFIDKLKECNFIY-QEFLLCPSTVGVPNSRLR 161 (333)
T ss_dssp ETTEECCTTCTTSCCHHHHHHHGGGCTTC-CEEEEEECTTGGGSHHHHHHHHHHHHTTEEE-EEEEECTTTTTCSCCCCE
T ss_pred hhhhccCCcCcccccHHHHHHHHHHhcCC-CEEEEecchhhhhhhHHHHHHHHHHhCCCeE-EEEEecHHHcCCCccceE
Confidence 0 011112455555554 4 5 34555554322 1223456888899999875 56666655554 34445
Q ss_pred eeeEE
Q 047630 379 MYLSA 383 (392)
Q Consensus 379 ~ylsa 383 (392)
+|+.+
T Consensus 162 ~fiva 166 (333)
T 4h0n_A 162 YYCTA 166 (333)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66544
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.26 Score=47.88 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=58.6
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFDlV 302 (392)
+.++.++ |-+|+|. |..+..+++ .|. .|++++ .+....+.+.+.|.-.++.....++ ...++.+|+|
T Consensus 188 ~~~g~~V---lV~GaG~vG~~a~qlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~v 262 (371)
T 1f8f_A 188 VTPASSF---VTWGAGAVGLSALLAAKVCGASIIIAVD--IVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA 262 (371)
T ss_dssp CCTTCEE---EEESCSHHHHHHHHHHHHHTCSEEEEEE--SCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEE
Confidence 4455555 9999886 788888887 677 688754 3345555666666422222211111 1122369999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+-.-.- ...+.++.+.|++||++++...
T Consensus 263 id~~g~---------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 263 LESTGS---------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp EECSCC---------HHHHHHHHHTEEEEEEEEECCC
T ss_pred EECCCC---------HHHHHHHHHHHhcCCEEEEeCC
Confidence 865431 1367889999999999977643
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=1 Score=47.58 Aligned_cols=63 Identities=22% Similarity=0.165 Sum_probs=40.7
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+..+|+++.-..--.-.++---..++..+.++++|||.+...... ..+++.+.++||...+..
T Consensus 169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAA-------GFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCC-------HHHHHHHHHTTCEEEEEE
T ss_pred CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCc-------HHHHHHHHhCCeEEEecc
Confidence 468999987431111011111246899999999999987543221 347778999999877654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=90.54 E-value=0.36 Score=47.27 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=36.7
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh---cCCccEEEeccCcC
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS---RGVVPLYISISQRL 292 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~---rg~i~~~~~d~~~L 292 (392)
.|||||.|.|.++..|++. ...++++.+| ........+ .+.+.++.+|+..+
T Consensus 61 ~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D--~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 61 KVLDLYPGVGIQSAIFYNKYCPRQYSLLEKR--SSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp EEEEESCTTCHHHHHHHHHHCCSEEEEECCC--HHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred EEEEECCCCCHHHHHHHhhCCCCEEEEEecC--HHHHHHHHHhccCCCEEEEECCccch
Confidence 3499999999999999985 5688885544 444443332 34578888887544
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=1.3 Score=46.69 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=40.8
Q ss_pred CCcccEEEEcccccccCCch-hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 296 DNTLDIVHSMHVLSNWIPTT-LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~-~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+..||+++.-. +..-..++ --..++..++++++|||.+...... ..+++.+.++||...+..
T Consensus 177 ~~~~d~~~~D~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 177 NQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA-------GFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp TTCEEEEEECC-SCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCC-------HHHHHHHHHHTCEEEEEE
T ss_pred CCcccEEEECC-CCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCc-------HHHHHHHHhCCeEEEecc
Confidence 46799998742 21111111 1246899999999999998643221 347788999999877654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.27 E-value=0.91 Score=41.91 Aligned_cols=83 Identities=7% Similarity=-0.014 Sum_probs=50.5
Q ss_pred cEEEeccCcC--CCCCCcccEEEEccccccc----C---Cc----hhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 283 PLYISISQRL--PFFDNTLDIVHSMHVLSNW----I---PT----TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 283 ~~~~~d~~~L--pf~d~sFDlV~s~~~l~~~----~---~~----~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
.++++|+... .+++++||+|++.-....- . .. ..+...+.++.|+|+|||.+++... ......
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~----d~~~~~ 81 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT----PFNCAF 81 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC----HHHHHH
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC----cHHHHH
Confidence 4566664321 1346789999887544211 0 00 1356788999999999999988741 111233
Q ss_pred HHHHHHHcCCeEEEEEEeec
Q 047630 350 YVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 350 l~~ll~~aGf~~i~w~~~~k 369 (392)
+..++.+.||....+.+..|
T Consensus 82 ~~~~~~~~gf~~~~~iiW~K 101 (260)
T 1g60_A 82 ICQYLVSKGMIFQNWITWDK 101 (260)
T ss_dssp HHHHHHHTTCEEEEEEEECC
T ss_pred HHHHHHhhccceeEEEEEEe
Confidence 56678888997765444333
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.58 Score=45.91 Aligned_cols=104 Identities=11% Similarity=0.029 Sum_probs=60.7
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC------CC-CCCc
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL------PF-FDNT 298 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L------pf-~d~s 298 (392)
..+.++.+| |-+|+|. |.++..+++ .|. .|++++ .+....+.+.+.|. ..+.....++ .. ....
T Consensus 181 ~~~~~g~~V---lV~GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa-~~i~~~~~~~~~~~~~~~~~g~g 254 (398)
T 2dph_A 181 AGVKPGSHV---YIAGAGPVGRCAAAGARLLGAACVIVGD--QNPERLKLLSDAGF-ETIDLRNSAPLRDQIDQILGKPE 254 (398)
T ss_dssp TTCCTTCEE---EEECCSHHHHHHHHHHHHHTCSEEEEEE--SCHHHHHHHHTTTC-EEEETTSSSCHHHHHHHHHSSSC
T ss_pred cCCCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEEc--CCHHHHHHHHHcCC-cEEcCCCcchHHHHHHHHhCCCC
Confidence 345566666 9999986 888888887 688 888855 43455556666664 4332211111 00 1236
Q ss_pred ccEEEEcccccccCC-c----hhHHHHHHHHHHcccCCcEEEEEe
Q 047630 299 LDIVHSMHVLSNWIP-T----TLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 299 FDlV~s~~~l~~~~~-~----~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
||+|+-.-.-..... . ......+.++.+.|++||++++..
T Consensus 255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 999986543211000 0 000136788999999999997553
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=89.49 E-value=0.8 Score=43.98 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=59.5
Q ss_pred HHhhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----C-CCCCc
Q 047630 228 VLATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----P-FFDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----p-f~d~s 298 (392)
...+.++.++ |=+|+|. |.++..+++ .|. .|++ ++.+....+.+.+.|...++.....++ . .....
T Consensus 161 ~~~~~~g~~V---lV~GaG~vG~~a~qla~~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g 235 (352)
T 3fpc_A 161 LANIKLGDTV---CVIGIGPVGLMSVAGANHLGAGRIFA--VGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKG 235 (352)
T ss_dssp HTTCCTTCCE---EEECCSHHHHHHHHHHHTTTCSSEEE--ECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCC
T ss_pred hcCCCCCCEE---EEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCC
Confidence 3445666666 8888875 778888887 677 6888 444344455666666422322211111 0 12336
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+|+|+-.-.- . ..+.++.+.|++||.++...
T Consensus 236 ~D~v~d~~g~------~---~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 236 VDKVVIAGGD------V---HTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp EEEEEECSSC------T---THHHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCCC------h---HHHHHHHHHHhcCCEEEEec
Confidence 9999864322 1 25788899999999997553
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=89.47 E-value=0.92 Score=43.68 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=58.8
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEec---cCc----C-CCCCC
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISI---SQR----L-PFFDN 297 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d---~~~----L-pf~d~ 297 (392)
..+.++.++ |-+|+|. |.++..+++ .|. .|++++ .+....+.+.+.|.-..+... ..+ + ....+
T Consensus 167 ~~~~~g~~V---lV~GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~ 241 (356)
T 1pl8_A 167 GGVTLGHKV---LVCGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGC 241 (356)
T ss_dssp HTCCTTCEE---EEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred cCCCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCC
Confidence 345566666 8899875 778888887 688 888855 334445566666642222211 011 1 00114
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+|+|+-.-.- . ..+.+..++|++||++++..
T Consensus 242 g~D~vid~~g~------~---~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 242 KPEVTIECTGA------E---ASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp CCSEEEECSCC------H---HHHHHHHHHSCTTCEEEECS
T ss_pred CCCEEEECCCC------h---HHHHHHHHHhcCCCEEEEEe
Confidence 68999865331 1 25688889999999997654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=1 Score=43.76 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=60.6
Q ss_pred HHhhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC--------CCCC
Q 047630 228 VLATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL--------PFFD 296 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L--------pf~d 296 (392)
...+.++.++ |=+|+|. |.++..+++ .|. .|+++ +.+....+.+.+.|....+.....++ ....
T Consensus 177 ~~~~~~g~~V---lV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~ 251 (370)
T 4ej6_A 177 LSGIKAGSTV---AILGGGVIGLLTVQLARLAGATTVILS--TRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVP 251 (370)
T ss_dssp HHTCCTTCEE---EEECCSHHHHHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSST
T ss_pred hcCCCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccC
Confidence 3456666666 7788865 778888877 687 78774 44345555566666422322111110 1223
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+.+|+|+-.-.- ...+.++.+.|++||.+++...
T Consensus 252 gg~Dvvid~~G~---------~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 252 GGVDVVIECAGV---------AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp TCEEEEEECSCC---------HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCEEEECCCC---------HHHHHHHHHHhccCCEEEEEec
Confidence 479999864321 1367889999999999987653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.23 E-value=0.5 Score=43.70 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=30.8
Q ss_pred HHHHHHHhh--CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecC
Q 047630 223 FSIDEVLAT--KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMN 267 (392)
Q Consensus 223 ~lI~~ll~l--~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD 267 (392)
.+++.++.. .+++. |||..||+|..+....+.|..++|++++
T Consensus 200 ~l~~~~i~~~~~~~~~---vlD~f~GsGtt~~~a~~~gr~~ig~e~~ 243 (260)
T 1g60_A 200 DLIERIIRASSNPNDL---VLDCFMGSGTTAIVAKKLGRNFIGCDMN 243 (260)
T ss_dssp HHHHHHHHHHCCTTCE---EEESSCTTCHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHhCCCCCE---EEECCCCCCHHHHHHHHcCCeEEEEeCC
Confidence 344444432 33444 5999999999999999999999996554
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.06 E-value=1.3 Score=42.36 Aligned_cols=96 Identities=14% Similarity=0.038 Sum_probs=58.1
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEecc-CcCC------CC---C
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISIS-QRLP------FF---D 296 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-~~Lp------f~---d 296 (392)
..+.++.++ |-+|+|. |..+..+++ .|..|++++ .+....+.+.+.|.-..+.... .++. .. .
T Consensus 164 ~~~~~g~~V---lV~GaG~vG~~a~qla~~~Ga~Vi~~~--~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g 238 (352)
T 1e3j_A 164 AGVQLGTTV---LVIGAGPIGLVSVLAAKAYGAFVVCTA--RSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 238 (352)
T ss_dssp HTCCTTCEE---EEECCSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred cCCCCCCEE---EEECCCHHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccC
Confidence 345566666 8899875 777777777 788887754 3344445555666422222111 1110 01 2
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+|+|+-.-.- . ..+.+..+.|++||.++...
T Consensus 239 ~g~D~vid~~g~------~---~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 239 DLPNVTIDCSGN------E---KCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SCCSEEEECSCC------H---HHHHHHHHHSCTTCEEEECS
T ss_pred CCCCEEEECCCC------H---HHHHHHHHHHhcCCEEEEEe
Confidence 468999865431 1 25688889999999997654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=88.31 E-value=0.55 Score=40.94 Aligned_cols=92 Identities=20% Similarity=0.115 Sum_probs=53.4
Q ss_pred hCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCCCcc
Q 047630 231 TKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFDNTL 299 (392)
Q Consensus 231 l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d~sF 299 (392)
+.++..+ |.+|+ |.|..+..++. .|.+|++++.+ ....+.+.+.|. .... +..... .....+
T Consensus 36 ~~~g~~v---lV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~--~~~~~~~~~~g~-~~~~-d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 36 LSPGERV---LIHSATGGVGMAAVSIAKMIGARIYTTAGS--DAKREMLSRLGV-EYVG-DSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp CCTTCEE---EETTTTSHHHHHHHHHHHHHTCEEEEEESS--HHHHHHHHTTCC-SEEE-ETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCCEE---EEeeCCChHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHcCC-CEEe-eCCcHHHHHHHHHHhCCCCC
Confidence 3444444 99994 45666655554 78898885532 334444444453 2222 211110 112469
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|+|+.+-. . ..+.++.+.|++||++++...
T Consensus 109 D~vi~~~g-------~---~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 109 DVVLNSLA-------G---EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEEEECCC-------T---HHHHHHHHTEEEEEEEEECSC
T ss_pred eEEEECCc-------h---HHHHHHHHHhccCCEEEEEcC
Confidence 99986532 1 257888999999999977643
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=87.86 E-value=7.5 Score=36.72 Aligned_cols=138 Identities=11% Similarity=0.016 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCc-C---
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQR-L--- 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~-L--- 292 (392)
...+++.+..+. ++.+ ||+=+|+|.++..+.+.+..++.++ .+......+.++ ..+.++..|... +
T Consensus 80 l~~yf~~l~~~n-~~~~---LDlfaGSGaLgiEaLS~~d~~vfvE--~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l 153 (283)
T 2oo3_A 80 FLEYISVIKQIN-LNST---LSYYPGSPYFAINQLRSQDRLYLCE--LHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNAL 153 (283)
T ss_dssp GHHHHHHHHHHS-SSSS---CCEEECHHHHHHHHSCTTSEEEEEC--CSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCc---eeEeCCcHHHHHHHcCCCCeEEEEe--CCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHh
Confidence 455555555443 3566 9999999999999999887888844 422333322222 235666666432 2
Q ss_pred CCCCCcccEEEEcccccccCCchhHHHHHHHHHH--cccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 293 PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYR--VLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~R--vLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
.-+...||+|+.--.+.. ....+.++..+.+ .+.|+|++++==......... .+.+.+++.|.+.++.+..-
T Consensus 154 ~~~~~~fdLVfiDPPYe~---k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~-~~~~~l~~~~~~~l~~el~~ 227 (283)
T 2oo3_A 154 LPPPEKRGLIFIDPSYER---KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTE-QFLRKMREISSKSVRIELHL 227 (283)
T ss_dssp CSCTTSCEEEEECCCCCS---TTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHH-HHHHHHHHHCSSEEEEEEEC
T ss_pred cCCCCCccEEEECCCCCC---CcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHH-HHHHHHHhcCCCeEEEEEEe
Confidence 123457999998776542 1344556665555 456888775433333333333 46666777776555544443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.83 E-value=0.8 Score=44.53 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=57.3
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEec----cCcCCCCCCcccEEE
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISI----SQRLPFFDNTLDIVH 303 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d----~~~Lpf~d~sFDlV~ 303 (392)
.+.++.++ |-+|+|. |..+..+++ .|..|++++. +....+.+.+.|...++... .+.+. +.+|+|+
T Consensus 191 ~~~~g~~V---lV~GaG~vG~~aiqlak~~Ga~Vi~~~~--~~~~~~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvi 262 (369)
T 1uuf_A 191 QAGPGKKV---GVVGIGGLGHMGIKLAHAMGAHVVAFTT--SEAKREAAKALGADEVVNSRNADEMAAHL---KSFDFIL 262 (369)
T ss_dssp TCCTTCEE---EEECCSHHHHHHHHHHHHTTCEEEEEES--SGGGHHHHHHHTCSEEEETTCHHHHHTTT---TCEEEEE
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHcCCcEEeccccHHHHHHhh---cCCCEEE
Confidence 45566655 8899875 778888877 7888888553 34555556566642222211 11221 4699998
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
-.-.-. ..+.+..+.|++||.++...
T Consensus 263 d~~g~~---------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 263 NTVAAP---------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp ECCSSC---------CCHHHHHTTEEEEEEEEECC
T ss_pred ECCCCH---------HHHHHHHHHhccCCEEEEec
Confidence 654321 13577889999999987643
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=87.81 E-value=1.7 Score=41.65 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=47.7
Q ss_pred cEE-EeccCc-C-CCCCCcccEEEEcccccc----cC-C---chhHHHHHHHHHHcccCCcEEEEEeecccc-----cch
Q 047630 283 PLY-ISISQR-L-PFFDNTLDIVHSMHVLSN----WI-P---TTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----AQL 346 (392)
Q Consensus 283 ~~~-~~d~~~-L-pf~d~sFDlV~s~~~l~~----~~-~---~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----~~l 346 (392)
.++ ++|+.. + .+++++||+|++.-.... |. . ...+...|.++.|+|+|||.+++..-.... ..+
T Consensus 40 ~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~~~~l 119 (319)
T 1eg2_A 40 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDL 119 (319)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCH
T ss_pred eEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcccccccccccH
Confidence 445 666432 1 234678888888754421 10 0 113567888999999999999887533222 122
Q ss_pred HHHHHHHHHHcC-CeEEE
Q 047630 347 EDVYVPLIESVG-FNKLK 363 (392)
Q Consensus 347 ~~~l~~ll~~aG-f~~i~ 363 (392)
..+..++...| |..+.
T Consensus 120 -~~l~~~i~~~G~~~~~~ 136 (319)
T 1eg2_A 120 -ISIISHMRQNSKMLLAN 136 (319)
T ss_dssp -HHHHHHHHHHCCCEEEE
T ss_pred -HHHHHHHhCcccceeEE
Confidence 33556667777 86654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=0.87 Score=43.45 Aligned_cols=95 Identities=14% Similarity=0.030 Sum_probs=58.2
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC----CCCCcccEEE
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP----FFDNTLDIVH 303 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp----f~d~sFDlV~ 303 (392)
.+.++.++ |-+|+|. |..+..+++ .|.+|++++ .+....+.+.+.|.-..+.....++. -..+.+|+|+
T Consensus 163 ~~~~g~~V---lV~GaG~vG~~a~qla~~~Ga~Vi~~~--~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 163 DTRPGQWV---VISGIGGLGHVAVQYARAMGLRVAAVD--IDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp TCCTTSEE---EEECCSTTHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHCCCeEEEEe--CCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 34555555 7799875 888888887 789998855 43455556666664222222111110 0113588887
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
-...- ...+..+.+.|++||.+++..
T Consensus 238 d~~g~---------~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 238 VTAVS---------PKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp ESSCC---------HHHHHHHHHHEEEEEEEEECS
T ss_pred EeCCC---------HHHHHHHHHHhccCCEEEEeC
Confidence 54321 136788999999999997654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=86.18 E-value=1.6 Score=42.35 Aligned_cols=95 Identities=11% Similarity=0.037 Sum_probs=58.4
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEec--cCcC-----CCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISI--SQRL-----PFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d--~~~L-----pf~d~sF 299 (392)
.+.++.+| |=+|+|. |.++..+++ .|. .|+++ +.+....+.+.+.|.-.++... ...+ ...++.+
T Consensus 190 ~~~~g~~V---lV~GaG~vG~~a~q~a~~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 190 KVEPGSNV---AIFGLGTVGLAVAEGAKTAGASRIIGI--DIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp CCCTTCCE---EEECCSHHHHHHHHHHHHHTCSCEEEE--CSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 34455666 8889874 778888877 687 78884 4434555666666642222211 1111 1123479
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEe
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDH 338 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~ 338 (392)
|+|+-.-.- ...+....+.|++| |++++..
T Consensus 265 D~vid~~g~---------~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 265 DYSFECIGN---------VSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SEEEECSCC---------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCC---------HHHHHHHHHHhhccCCEEEEEc
Confidence 999865331 13678899999997 9987654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=85.94 E-value=5.8 Score=37.78 Aligned_cols=100 Identities=14% Similarity=0.009 Sum_probs=63.1
Q ss_pred ccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHH----HHHh-----cCCccEEEeccCcCC---------CCCC
Q 047630 237 IRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNN----FIAS-----RGVVPLYISISQRLP---------FFDN 297 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~----~aa~-----rg~i~~~~~d~~~Lp---------f~d~ 297 (392)
++.|+++|||-=..+.++.. .+..++- +|. +...+ ...+ .+...++..|..+ . |...
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~e--vD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYE--IDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPS 178 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEE--EEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEE--cCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence 45569999999888877773 3456655 554 33332 2221 1223455566554 2 1112
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.-=++++-.++++ .+++....+++.+...+.||+.++++....
T Consensus 179 ~Pt~~i~Egvl~Y-l~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 179 ARTAWLAEGLLMY-LPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp SCEEEEECSCGGG-SCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCEEEEEechHhh-CCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 2335556666655 566788899999999999999999987643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=85.73 E-value=2.3 Score=41.06 Aligned_cols=94 Identities=10% Similarity=-0.003 Sum_probs=56.8
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEecc--CcC-----CCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISIS--QRL-----PFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~--~~L-----pf~d~sFD 300 (392)
+.++.++ |-+|+|. |..+..+++ .|. .|+++ +.+....+.+.+.|.-.++.... .++ ...++.+|
T Consensus 189 ~~~g~~V---lV~GaG~vG~~a~qla~~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D 263 (374)
T 2jhf_A 189 VTQGSTC---AVFGLGGVGLSVIMGCKAAGAARIIGV--DINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVD 263 (374)
T ss_dssp CCTTCEE---EEECCSHHHHHHHHHHHHTTCSEEEEE--CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCc
Confidence 4455555 8889765 777777777 687 78884 44345556666666422221111 111 01124699
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~ 338 (392)
+|+-.-.- ...+.+..+.|++| |.+++..
T Consensus 264 ~vid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 264 FSFEVIGR---------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp EEEECSCC---------HHHHHHHHHHBCTTTCEEEECS
T ss_pred EEEECCCC---------HHHHHHHHHHhhcCCcEEEEec
Confidence 99865321 13578889999999 9997654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=85.67 E-value=2.4 Score=40.96 Aligned_cols=95 Identities=11% Similarity=-0.054 Sum_probs=57.9
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEecc--CcC-----CCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISIS--QRL-----PFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~--~~L-----pf~d~sF 299 (392)
.+.++.+| |-+|+|. |.++..+++ .|. .|++++ .+....+.+.+.|.-.++.... .++ ....+.+
T Consensus 188 ~~~~g~~V---lV~GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 188 KVTPGSTC---AVFGLGGVGFSAIVGCKAAGASRIIGVG--THKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp CCCTTCEE---EEECCSHHHHHHHHHHHHHTCSEEEEEC--SCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 34455555 8889875 777888877 687 788844 4345556666666422222111 111 1112369
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEe
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDH 338 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~ 338 (392)
|+|+-.-.- ...+.+..+.|++| |.+++..
T Consensus 263 Dvvid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 263 DYAVECAGR---------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SEEEECSCC---------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CEEEECCCC---------HHHHHHHHHHHhcCCCEEEEEc
Confidence 999864321 13678889999999 9997654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=85.65 E-value=0.98 Score=43.13 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=55.7
Q ss_pred hCCCCcccEEEEEcCC--cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----C-CCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGG--VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----P-FFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCG--tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----p-f~d~sFDl 301 (392)
+.++.++ |-+|+| .|..+..+++ .|.+|++++.+ ....+.+.+.|.-..+.....++ . .....+|+
T Consensus 142 ~~~g~~V---lV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~--~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dv 216 (340)
T 3gms_A 142 LQRNDVL---LVNACGSAIGHLFAQLSQILNFRLIAVTRN--NKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADA 216 (340)
T ss_dssp CCTTCEE---EESSTTSHHHHHHHHHHHHHTCEEEEEESS--STTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred cCCCCEE---EEeCCccHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcE
Confidence 4455555 999987 5777777776 78999886644 34555555556322222111111 0 12346999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|+.+-.- . .+.+..+.|++||.+++...
T Consensus 217 vid~~g~------~----~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 217 AIDSIGG------P----DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp EEESSCH------H----HHHHHHHTEEEEEEEEECCC
T ss_pred EEECCCC------h----hHHHHHHHhcCCCEEEEEee
Confidence 9865432 1 22445589999999987643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.60 E-value=2.5 Score=40.78 Aligned_cols=94 Identities=15% Similarity=0.021 Sum_probs=56.7
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEecc--CcC-----CCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISIS--QRL-----PFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~--~~L-----pf~d~sFD 300 (392)
+.+++++ |-+|+|. |..+..+++ .|. .|++++ .+....+.+.+.|.-.++.... .++ ....+.+|
T Consensus 190 ~~~g~~V---lV~GaG~vG~~a~qla~~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D 264 (374)
T 1cdo_A 190 VEPGSTC---AVFGLGAVGLAAVMGCHSAGAKRIIAVD--LNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVD 264 (374)
T ss_dssp CCTTCEE---EEECCSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEEc--CCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCC
Confidence 4455555 8889765 777777777 687 788844 4345556666666422221111 111 01123699
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~ 338 (392)
+|+-.-.- ...+....+.|++| |.+++..
T Consensus 265 ~vid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 265 FSLECVGN---------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp EEEECSCC---------HHHHHHHHHTBCTTTCEEEECS
T ss_pred EEEECCCC---------HHHHHHHHHHhhcCCcEEEEEc
Confidence 99864321 13678889999999 9997654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=85.08 E-value=1.1 Score=43.21 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=57.3
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC------CCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP------FFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp------f~d~sFDlV 302 (392)
+.++.++ |-+|+|. |..+..+++ .|..|++++ .+....+.+.+.|.-..+..+..++. .....+|+|
T Consensus 187 ~~~g~~V---lV~G~G~vG~~a~qla~~~Ga~Vi~~~--~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~v 261 (363)
T 3uog_A 187 LRAGDRV---VVQGTGGVALFGLQIAKATGAEVIVTS--SSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHI 261 (363)
T ss_dssp CCTTCEE---EEESSBHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCEEEEEe--cCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEE
Confidence 4455555 8889765 777777777 788998855 33345555666664223321111110 123369999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+-.-.- . .+....+.|++||.+++...
T Consensus 262 id~~g~------~----~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 262 LEIAGG------A----GLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp EEETTS------S----CHHHHHHHEEEEEEEEEECC
T ss_pred EECCCh------H----HHHHHHHHhhcCCEEEEEec
Confidence 865431 1 35778899999999977643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=84.49 E-value=2.6 Score=40.55 Aligned_cols=94 Identities=11% Similarity=-0.014 Sum_probs=56.8
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEecc--CcC-----CCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISIS--QRL-----PFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~--~~L-----pf~d~sFD 300 (392)
+.++.++ |-+|+|. |.++..+++ .|. .|++++ .+....+.+.+.|...++.... .++ ....+.+|
T Consensus 188 ~~~g~~V---lV~GaG~vG~~avqla~~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D 262 (373)
T 2fzw_A 188 LEPGSVC---AVFGLGGVGLAVIMGCKVAGASRIIGVD--INKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVD 262 (373)
T ss_dssp CCTTCEE---EEECCSHHHHHHHHHHHHHTCSEEEEEC--SCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCC
Confidence 4455555 8889765 777777777 687 788844 4345555666666422221111 111 01123699
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~ 338 (392)
+|+-.-.- ...+.++.+.|++| |.+++..
T Consensus 263 ~vid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 263 YSFECIGN---------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp EEEECSCC---------HHHHHHHHHTBCTTTCEEEECS
T ss_pred EEEECCCc---------HHHHHHHHHhhccCCcEEEEEe
Confidence 99865331 13578889999999 9997654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=84.45 E-value=0.86 Score=42.95 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=54.0
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
+.++.++ |=+|+|. |.++..+++ .|.+|++++ + ....+.+.+.|. ..+..|.+.+ .+.+|+|+-.-.-
T Consensus 140 ~~~g~~V---lV~GaG~vG~~a~qlak~~Ga~Vi~~~-~--~~~~~~~~~lGa-~~v~~d~~~v---~~g~Dvv~d~~g~ 209 (315)
T 3goh_A 140 LTKQREV---LIVGFGAVNNLLTQMLNNAGYVVDLVS-A--SLSQALAAKRGV-RHLYREPSQV---TQKYFAIFDAVNS 209 (315)
T ss_dssp CCSCCEE---EEECCSHHHHHHHHHHHHHTCEEEEEC-S--SCCHHHHHHHTE-EEEESSGGGC---CSCEEEEECC---
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCEEEEEE-C--hhhHHHHHHcCC-CEEEcCHHHh---CCCccEEEECCCc
Confidence 3445555 8899863 778888887 688998865 3 455566666663 2222233333 5679998854321
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
. .+.+..+.|++||+++..
T Consensus 210 ------~----~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 210 ------Q----NAAALVPSLKANGHIICI 228 (315)
T ss_dssp --------------TTGGGEEEEEEEEEE
T ss_pred ------h----hHHHHHHHhcCCCEEEEE
Confidence 1 225677999999998765
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=83.56 E-value=3.5 Score=39.77 Aligned_cols=94 Identities=12% Similarity=-0.009 Sum_probs=56.6
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEecc--CcC-----CCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISIS--QRL-----PFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~--~~L-----pf~d~sFD 300 (392)
+.++.+| |-+|+|. |.++..+++ .|. .|++++ .+....+.+.+.|.-..+.... .++ ....+.+|
T Consensus 193 ~~~g~~V---lV~GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D 267 (376)
T 1e3i_A 193 VTPGSTC---AVFGLGCVGLSAIIGCKIAGASRIIAID--INGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVD 267 (376)
T ss_dssp CCTTCEE---EEECCSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCcc
Confidence 4455555 8889864 777888877 687 788844 4345556666666422221111 111 01123699
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~ 338 (392)
+|+-.-.- ...+.+..+.|++| |.+++..
T Consensus 268 vvid~~G~---------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 268 YSLDCAGT---------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp EEEESSCC---------HHHHHHHHHTBCTTTCEEEECC
T ss_pred EEEECCCC---------HHHHHHHHHHhhcCCCEEEEEC
Confidence 99864321 13678899999999 9997653
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=83.36 E-value=5.9 Score=37.64 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=52.3
Q ss_pred CCcccEEEEcccc----ccc---CCch-hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 296 DNTLDIVHSMHVL----SNW---IPTT-LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 296 d~sFDlV~s~~~l----~~~---~~~~-~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
.+.+|+|++..+- |+. .|.. .+..++..+.++|+|||.|++..|...+... +.+...+++. |+.++-..-
T Consensus 204 ~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~s-e~lv~~LaR~-F~~Vr~vKP 281 (320)
T 2hwk_A 204 VPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRAS-ESIIGAIARQ-FKFSRVCKP 281 (320)
T ss_dssp SCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHH-HHHHHHHHTT-EEEEEEECC
T ss_pred cCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccH-HHHHHHHHHh-cceeeeeCC
Confidence 3679999987443 221 1111 1233667778999999999999876653333 3355566664 888776522
Q ss_pred eccCCCCcccceeeEEEE
Q 047630 368 RKLDRGPELREMYLSALL 385 (392)
Q Consensus 368 ~k~d~~~~~~e~ylsai~ 385 (392)
.......|+|+.+.-
T Consensus 282 ---~ASR~StEvf~La~g 296 (320)
T 2hwk_A 282 ---KSSLEETEVLFVFIG 296 (320)
T ss_dssp ---TTCCSTTCEEEEEEE
T ss_pred ---CCccccceEEEEEEe
Confidence 222236788875543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.35 E-value=4 Score=39.67 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=59.9
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCc-----C-CC-CCCcc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQR-----L-PF-FDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~-----L-pf-~d~sF 299 (392)
.+.++.+| |-+|+|. |.++..+++ .|. .|++++ .+....+.+.+.|. ..+...... + .. ....+
T Consensus 182 ~~~~g~~V---lV~GaG~vG~~aiqlAk~~Ga~~Vi~~~--~~~~~~~~a~~lGa-~~i~~~~~~~~~~~v~~~t~g~g~ 255 (398)
T 1kol_A 182 GVGPGSTV---YVAGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEV 255 (398)
T ss_dssp TCCTTCEE---EEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCCCEE---EEECCcHHHHHHHHHHHHCCCCeEEEEc--CCHHHHHHHHHcCC-cEEccCCcchHHHHHHHHhCCCCC
Confidence 45555555 8899876 788888887 677 677744 43455556666674 332211111 0 00 12369
Q ss_pred cEEEEccccc---------ccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 300 DIVHSMHVLS---------NWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 300 DlV~s~~~l~---------~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+|+-.-.-. +..++ ...+.+..++|++||.+++..
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 256 DCAVDAVGFEARGHGHEGAKHEAP---ATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCT---THHHHHHHHHEEEEEEEEECS
T ss_pred CEEEECCCCcccccccccccccch---HHHHHHHHHHHhcCCEEEEec
Confidence 9998654321 11111 136788999999999997654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=83.29 E-value=1.2 Score=42.19 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=56.2
Q ss_pred hhCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHH-HhcCCccEEEeccCcC-----CCCCCccc
Q 047630 230 ATKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFI-ASRGVVPLYISISQRL-----PFFDNTLD 300 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~a-a~rg~i~~~~~d~~~L-----pf~d~sFD 300 (392)
.+.++.++ |-+|+ |.|..+..+++ .|.+|++++ .+....+.+ .+.|....+.....++ ....+.+|
T Consensus 146 ~~~~g~~v---lI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 146 QPKNGETV---VISGAAGAVGSVAGQIARLKGCRVVGIA--GGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp CCCTTCEE---EESSTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred CCCCCCEE---EEECCCCHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence 34555555 99998 45777777766 788998855 323444455 4445322222111111 00134699
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+|+.+-.- ..+....+.|++||.+++..
T Consensus 221 ~vi~~~g~----------~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 221 VFFDNVGG----------EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEEESSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCc----------chHHHHHHHHhhCCEEEEEe
Confidence 98864431 25788889999999998754
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=83.21 E-value=11 Score=38.25 Aligned_cols=122 Identities=11% Similarity=0.121 Sum_probs=68.6
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCC-----------------CC
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFF-----------------DN 297 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~-----------------d~ 297 (392)
+++|+-||.|.+...+.+.|.+++. .+|++....+....+ ....++.+|+..+... -.
T Consensus 90 ~viDLFaG~GGlslG~~~aG~~~v~-avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~~ 168 (482)
T 3me5_A 90 RFIDLFAGIGGIRRGFESIGGQCVF-TSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIP 168 (482)
T ss_dssp EEEEESCTTSHHHHHHHTTTEEEEE-EECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHSC
T ss_pred eEEEecCCccHHHHHHHHCCCEEEE-EEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhhcCC
Confidence 4599999999999999998887542 355533333322222 1235667776654311 13
Q ss_pred cccEEEEcccccccCCc----------------hhHHHHHHHHHHc---ccCCcEEEEEeeccc----ccchHHHHHHHH
Q 047630 298 TLDIVHSMHVLSNWIPT----------------TLLHFLMFDIYRV---LRPGGLFWLDHFFCV----GAQLEDVYVPLI 354 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~----------------~~l~~~L~el~Rv---LKPGG~lii~~~~~~----~~~l~~~l~~ll 354 (392)
.+|+++....-..+..- +....++.++.|+ ++|- +|++.....- .....+.+.+.+
T Consensus 169 ~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk-~fvlENV~gl~s~~~g~~f~~i~~~L 247 (482)
T 3me5_A 169 EHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPA-MFVLENVKNLKSHDKGKTFRIIMQTL 247 (482)
T ss_dssp CCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCS-EEEEEEETTTTTGGGGHHHHHHHHHH
T ss_pred CCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCc-EEEEeCcHHHhcccCCcHHHHHHHHH
Confidence 58999876443322100 0001244554444 4673 5556654321 223445678889
Q ss_pred HHcCCeEE
Q 047630 355 ESVGFNKL 362 (392)
Q Consensus 355 ~~aGf~~i 362 (392)
++.||.+.
T Consensus 248 ~~lGY~v~ 255 (482)
T 3me5_A 248 DELGYDVA 255 (482)
T ss_dssp HHTTEEET
T ss_pred hcCCcEEE
Confidence 99999864
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=82.78 E-value=1.5 Score=41.60 Aligned_cols=93 Identities=14% Similarity=-0.005 Sum_probs=55.8
Q ss_pred CCCCcccEEEEEc--CCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC------CCCCCcccEE
Q 047630 232 KKPGTIRIGLDIG--GGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL------PFFDNTLDIV 302 (392)
Q Consensus 232 ~~~~~ir~VLDIG--CGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L------pf~d~sFDlV 302 (392)
.++.++ |-+| .|.|..+..+++ .|.+|++++ .+....+.+.+.|.-..+.....++ -.....+|+|
T Consensus 139 ~~g~~V---lV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~--~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvv 213 (325)
T 3jyn_A 139 KPGEII---LFHAAAGGVGSLACQWAKALGAKLIGTV--SSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVV 213 (325)
T ss_dssp CTTCEE---EESSTTSHHHHHHHHHHHHHTCEEEEEE--SSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCEE---EEEcCCcHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEE
Confidence 344444 8888 345777777776 788998855 3344455555556322222211111 0123469999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+.+-.- ..+....+.|++||.+++...
T Consensus 214 id~~g~----------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 214 YDGVGQ----------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp EESSCG----------GGHHHHHTTEEEEEEEEECCC
T ss_pred EECCCh----------HHHHHHHHHhcCCCEEEEEec
Confidence 875432 145788899999999977643
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=82.73 E-value=1.9 Score=41.52 Aligned_cols=95 Identities=9% Similarity=0.061 Sum_probs=56.0
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccC-cC--CCCCCcccEEEE
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQ-RL--PFFDNTLDIVHS 304 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~-~L--pf~d~sFDlV~s 304 (392)
.+.++.++ |-+|+|. |..+..+++ .|..|++++.+ ....+.+.+.|.-.++..... ++ ... +.+|+|+.
T Consensus 176 ~~~~g~~V---lV~GaG~vG~~~~qlak~~Ga~Vi~~~~~--~~~~~~~~~lGa~~v~~~~~~~~~~~~~~-~~~D~vid 249 (360)
T 1piw_A 176 GCGPGKKV---GIVGLGGIGSMGTLISKAMGAETYVISRS--SRKREDAMKMGADHYIATLEEGDWGEKYF-DTFDLIVV 249 (360)
T ss_dssp TCSTTCEE---EEECCSHHHHHHHHHHHHHTCEEEEEESS--STTHHHHHHHTCSEEEEGGGTSCHHHHSC-SCEEEEEE
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHCCCEEEEEcCC--HHHHHHHHHcCCCEEEcCcCchHHHHHhh-cCCCEEEE
Confidence 45555555 9999864 777777777 68888886543 344555555663222222111 11 011 46999986
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
.-.-. +. ..+.++.+.|++||.++..
T Consensus 250 ~~g~~---~~----~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 250 CASSL---TD----IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CCSCS---TT----CCTTTGGGGEEEEEEEEEC
T ss_pred CCCCC---cH----HHHHHHHHHhcCCCEEEEe
Confidence 54320 00 1245677899999998754
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.68 E-value=1.2 Score=43.48 Aligned_cols=72 Identities=7% Similarity=-0.052 Sum_probs=46.0
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHHHHHhc---CCccEEEeccCcCCC------CCCc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNNFIASR---GVVPLYISISQRLPF------FDNT 298 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~~aa~r---g~i~~~~~d~~~Lpf------~d~s 298 (392)
+.+++.+ +|..||.|..+..+++. + -.|+|+|.| ....+.+ ++ ..+.++.++...+.- -.++
T Consensus 55 i~pggiy---VD~TlG~GGHS~~iL~~lg~~GrVig~D~D--p~Al~~A-~rL~~~Rv~lv~~nF~~l~~~L~~~g~~~~ 128 (347)
T 3tka_A 55 IRPDGIY---IDGTFGRGGHSRLILSQLGEEGRLLAIDRD--PQAIAVA-KTIDDPRFSIIHGPFSALGEYVAERDLIGK 128 (347)
T ss_dssp CCTTCEE---EESCCTTSHHHHHHHTTCCTTCEEEEEESC--HHHHHHH-TTCCCTTEEEEESCGGGHHHHHHHTTCTTC
T ss_pred CCCCCEE---EEeCcCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHH-HhhcCCcEEEEeCCHHHHHHHHHhcCCCCc
Confidence 4555555 99999999999999985 3 468885544 3444433 22 236677777665421 1136
Q ss_pred ccEEEEcccc
Q 047630 299 LDIVHSMHVL 308 (392)
Q Consensus 299 FDlV~s~~~l 308 (392)
+|.|+....+
T Consensus 129 vDgILfDLGV 138 (347)
T 3tka_A 129 IDGILLDLGV 138 (347)
T ss_dssp EEEEEEECSC
T ss_pred ccEEEECCcc
Confidence 8999875444
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=82.67 E-value=3.1 Score=39.93 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=58.4
Q ss_pred HhhCCC------CcccEEEEEcCCc-chHH-HHHH-H-cCCE-EEEEecCCCch---hHHHHHhcCCccEEEeccCcCCC
Q 047630 229 LATKKP------GTIRIGLDIGGGV-ATFA-VRMM-E-RNIT-IVTTSMNLNGP---FNNFIASRGVVPLYISISQRLPF 294 (392)
Q Consensus 229 l~l~~~------~~ir~VLDIGCGt-G~~a-~~La-~-~g~~-vvg~~iD~~a~---~~~~aa~rg~i~~~~~d~~~Lpf 294 (392)
..+.++ .+| |-+|+|. |.++ ..++ + .|.. |++++.+ .. ..+.+.+.|. ..+ +...-.+
T Consensus 162 ~~~~~g~~~~~~~~V---lV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~--~~~~~~~~~~~~lGa-~~v--~~~~~~~ 233 (357)
T 2b5w_A 162 AYASRSAFDWDPSSA---FVLGNGSLGLLTLAMLKVDDKGYENLYCLGRR--DRPDPTIDIIEELDA-TYV--DSRQTPV 233 (357)
T ss_dssp HHHTTTTSCCCCCEE---EEECCSHHHHHHHHHHHHCTTCCCEEEEEECC--CSSCHHHHHHHHTTC-EEE--ETTTSCG
T ss_pred cCCCCCcccCCCCEE---EEECCCHHHHHHHHHHHHHHcCCcEEEEEeCC--cccHHHHHHHHHcCC-ccc--CCCccCH
Confidence 456666 555 8999754 7788 8888 6 6876 8886643 33 4556666663 322 3221111
Q ss_pred C-----CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 295 F-----DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 295 ~-----d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
. .+.+|+|+-.-.- . ..+.++.+.|++||.++....
T Consensus 234 ~~i~~~~gg~Dvvid~~g~------~---~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 234 EDVPDVYEQMDFIYEATGF------P---KHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp GGHHHHSCCEEEEEECSCC------H---HHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHhCCCCCEEEECCCC------h---HHHHHHHHHHhcCCEEEEEeC
Confidence 1 2368998854321 1 257888999999999977643
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=2.4 Score=40.92 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=57.8
Q ss_pred hhCCCCcccEEEEEc--CCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCcccE
Q 047630 230 ATKKPGTIRIGLDIG--GGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLDI 301 (392)
Q Consensus 230 ~l~~~~~ir~VLDIG--CGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFDl 301 (392)
.+.++.++ |-+| .|.|..+..+++ .|.+|++++ .+....+.+.+.|....+......+ ......+|+
T Consensus 160 ~~~~g~~V---lV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~--~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 160 GLSEGKKV---LVTAAAGGTGQFAMQLSKKAKCHVIGTC--SSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp CCCTTCEE---EETTTTBTTHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CCCCCCEE---EEeCCCcHHHHHHHHHHHhCCCEEEEEE--CCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCE
Confidence 44555555 9998 567888888877 788888855 3234445555556322222111111 001246899
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|+..-.- ..+..+.+.|++||.+++...
T Consensus 235 vid~~g~----------~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 235 VYESVGG----------AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEECSCT----------HHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCH----------HHHHHHHHHHhcCCEEEEEeC
Confidence 9865431 257888899999999877643
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=82.10 E-value=4.4 Score=38.48 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=56.3
Q ss_pred hhCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC------CCcccE
Q 047630 230 ATKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF------DNTLDI 301 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~------d~sFDl 301 (392)
.+.++.++ |-+|+| .|..+..+++ .|.+|++++ .+....+.+.+.|. .... +..+-.+. .+.+|+
T Consensus 161 ~~~~g~~V---lV~GaG~vG~~~~~~a~~~Ga~Vi~~~--~~~~~~~~~~~lGa-~~~~-d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 161 GAKPGEWV---AIYGIGGLGHVAVQYAKAMGLNVVAVD--IGDEKLELAKELGA-DLVV-NPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp TCCTTCEE---EEECCSTTHHHHHHHHHHTTCEEEEEC--SCHHHHHHHHHTTC-SEEE-CTTTSCHHHHHHHHHSSEEE
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHCCC-CEEe-cCCCccHHHHHHHHhCCCCE
Confidence 45566555 889885 4777777776 788888844 43444555555563 3222 21111110 036898
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+..-.. ...+.++.+.|++||.++...
T Consensus 234 vid~~g~---------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 234 AVVTAVS---------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp EEESSCC---------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEECCCC---------HHHHHHHHHHhhcCCEEEEec
Confidence 8865431 135788889999999997653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=81.83 E-value=1.9 Score=40.88 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=54.9
Q ss_pred CCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC------CCCCcccEE
Q 047630 232 KKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP------FFDNTLDIV 302 (392)
Q Consensus 232 ~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp------f~d~sFDlV 302 (392)
.++.++ |-+|+ |.|..+..+++ .|.+|++++ .+....+.+.+.|....+.....++. .....+|+|
T Consensus 147 ~~g~~v---lV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~--~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~v 221 (334)
T 3qwb_A 147 KKGDYV---LLFAAAGGVGLILNQLLKMKGAHTIAVA--STDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDAS 221 (334)
T ss_dssp CTTCEE---EESSTTBHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCEE---EEECCCCHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEE
Confidence 344444 88984 45777777776 789998855 33444455555563222222111110 123469999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+..-.- ..+....+.|++||.+++..
T Consensus 222 id~~g~----------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 222 FDSVGK----------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EECCGG----------GGHHHHHHHEEEEEEEEECC
T ss_pred EECCCh----------HHHHHHHHHhccCCEEEEEc
Confidence 865432 14677889999999997753
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=81.29 E-value=2.1 Score=40.92 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=55.2
Q ss_pred hCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC------CCCCcccE
Q 047630 231 TKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP------FFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp------f~d~sFDl 301 (392)
+.++.++ |-+|+ |.|..+..+++ .|.+|++++.+ ....+.+.+.|...++... .++. .....+|+
T Consensus 157 ~~~g~~V---lV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~--~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dv 230 (342)
T 4eye_A 157 LRAGETV---LVLGAAGGIGTAAIQIAKGMGAKVIAVVNR--TAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVDM 230 (342)
T ss_dssp CCTTCEE---EESSTTSHHHHHHHHHHHHTTCEEEEEESS--GGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEE
T ss_pred CCCCCEE---EEECCCCHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCceE
Confidence 3344445 99987 45777777776 78999886543 3445555555632222222 2110 12236999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+..-.- ..+....+.|++||.+++..
T Consensus 231 vid~~g~----------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 231 VVDPIGG----------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEESCC------------CHHHHHHTEEEEEEEEEC-
T ss_pred EEECCch----------hHHHHHHHhhcCCCEEEEEE
Confidence 9865432 13577889999999997653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=81.14 E-value=1.6 Score=41.35 Aligned_cols=91 Identities=10% Similarity=0.027 Sum_probs=53.9
Q ss_pred hCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCc---C-----CCCCCcc
Q 047630 231 TKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR---L-----PFFDNTL 299 (392)
Q Consensus 231 l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~---L-----pf~d~sF 299 (392)
+.++..+ |-.|+ |.|..+..++. .|.+|++++. +....+.+.+.|. .... |..+ + ....+.+
T Consensus 143 ~~~g~~v---lV~Ga~ggiG~~~~~~~~~~G~~V~~~~~--~~~~~~~~~~~g~-~~~~-d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 143 VKGGETV---LVSAAAGAVGSVVGQIAKLKGCKVVGAAG--SDEKIAYLKQIGF-DAAF-NYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp CCSSCEE---EEESTTBHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTTC-SEEE-ETTSCSCHHHHHHHHCTTCE
T ss_pred CCCCCEE---EEecCCCcHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHhcCC-cEEE-ecCCHHHHHHHHHHHhCCCC
Confidence 3444444 99997 55666666655 7889888553 2344444544453 2222 2111 1 0012469
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+|+.+-.- ..+.+..+.|++||++++..
T Consensus 216 d~vi~~~g~----------~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 216 DCYFDNVGG----------EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEEESSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred eEEEECCCh----------HHHHHHHHHHhcCCEEEEEe
Confidence 998865431 24688889999999997654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=80.78 E-value=5.5 Score=37.04 Aligned_cols=75 Identities=9% Similarity=-0.094 Sum_probs=50.4
Q ss_pred ccEEEeccCc-CC-----CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHH
Q 047630 282 VPLYISISQR-LP-----FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLI 354 (392)
Q Consensus 282 i~~~~~d~~~-Lp-----f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll 354 (392)
+.++.+++.+ +| .+..+||+|+.-.-. .+.....+..+...|+|||+++++++.. .+....+.+.+.+
T Consensus 160 i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-----Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~A~~ef~ 234 (257)
T 3tos_A 160 SVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-----YEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAMRKVL 234 (257)
T ss_dssp EEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-----HHHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHHHHHHHHT
T ss_pred EEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-----cchHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHHHHHHHHH
Confidence 6788887543 22 245679999976532 1333467889999999999999999742 2334455577777
Q ss_pred HHcCCeE
Q 047630 355 ESVGFNK 361 (392)
Q Consensus 355 ~~aGf~~ 361 (392)
.+.|.+.
T Consensus 235 ~~~~~~i 241 (257)
T 3tos_A 235 GLDHAPL 241 (257)
T ss_dssp CTTSSCC
T ss_pred hhCCCeE
Confidence 7766443
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=80.55 E-value=1.5 Score=41.82 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=57.4
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-c--CCEEEEEecCCCchhHHHHHhcCCccEEEecc-----CcCCCCCCccc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-R--NITIVTTSMNLNGPFNNFIASRGVVPLYISIS-----QRLPFFDNTLD 300 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~--g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-----~~Lpf~d~sFD 300 (392)
.+ ++.++ |-+|+|. |..+..+++ . |..|++++ .+....+.+.+.|.-.++.... ..+. ....+|
T Consensus 168 ~~-~g~~V---lV~GaG~vG~~aiqlak~~~~Ga~Vi~~~--~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~g~g~D 240 (344)
T 2h6e_A 168 KF-AEPVV---IVNGIGGLAVYTIQILKALMKNITIVGIS--RSKKHRDFALELGADYVSEMKDAESLINKLT-DGLGAS 240 (344)
T ss_dssp TC-SSCEE---EEECCSHHHHHHHHHHHHHCTTCEEEEEC--SCHHHHHHHHHHTCSEEECHHHHHHHHHHHH-TTCCEE
T ss_pred CC-CCCEE---EEECCCHHHHHHHHHHHHhcCCCEEEEEe--CCHHHHHHHHHhCCCEEeccccchHHHHHhh-cCCCcc
Confidence 45 66666 9999864 777777777 6 88888844 4344555555556322221111 1111 123699
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+|+-.-.- ...+.++.+.|++||.++...
T Consensus 241 ~vid~~g~---------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 241 IAIDLVGT---------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp EEEESSCC---------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCC---------hHHHHHHHHHhhcCCEEEEeC
Confidence 99865432 135788899999999997653
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=80.48 E-value=1.7 Score=41.48 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=55.5
Q ss_pred hhCCCCcccEEEEEcCC--cchHHHHHHH-c-CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCC-Ccc
Q 047630 230 ATKKPGTIRIGLDIGGG--VATFAVRMME-R-NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFD-NTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG--tG~~a~~La~-~-g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d-~sF 299 (392)
.+.++..+ |-+|+| .|..+..+++ . |.+|++++.+ ....+.+.+.|....+....... .... +.+
T Consensus 167 ~~~~g~~v---lV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 1jvb_A 167 SLDPTKTL---LVVGAGGGLGTMAVQIAKAVSGATIIGVDVR--EEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 241 (347)
T ss_dssp TCCTTCEE---EEETTTSHHHHHHHHHHHHHTCCEEEEEESS--HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCCCEE---EEECCCccHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCc
Confidence 34455555 999988 4566666665 6 8998885533 34444454445322221111110 1112 479
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+|+..-.- ...+.++.+.|++||.+++..
T Consensus 242 d~vi~~~g~---------~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 242 DAVIDLNNS---------EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp EEEEESCCC---------HHHHTTGGGGEEEEEEEEECC
T ss_pred eEEEECCCC---------HHHHHHHHHHHhcCCEEEEEC
Confidence 999865432 135688889999999997754
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.09 E-value=3.3 Score=39.40 Aligned_cols=86 Identities=12% Similarity=0.015 Sum_probs=52.8
Q ss_pred EEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCCCcccEEEEccc
Q 047630 239 IGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d~sFDlV~s~~~ 307 (392)
.||-+|+ |.|..+..+++ .|.+|++++.+ ....+.+.+.|. .... +..+-. .....+|+|+..-.
T Consensus 169 ~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~--~~~~~~~~~~ga-~~~~-d~~~~~~~~~~~~~~~~~~~d~vi~~~g 244 (343)
T 2eih_A 169 DVLVMAAGSGVSVAAIQIAKLFGARVIATAGS--EDKLRRAKALGA-DETV-NYTHPDWPKEVRRLTGGKGADKVVDHTG 244 (343)
T ss_dssp EEEECSTTSTTHHHHHHHHHHTTCEEEEEESS--HHHHHHHHHHTC-SEEE-ETTSTTHHHHHHHHTTTTCEEEEEESSC
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHhcCC-CEEE-cCCcccHHHHHHHHhCCCCceEEEECCC
Confidence 3499998 67888777776 78898885533 344444544453 2222 211111 11246999987654
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.. .+..+.+.|++||.++...
T Consensus 245 -~~---------~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 245 -AL---------YFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp -SS---------SHHHHHHHEEEEEEEEESS
T ss_pred -HH---------HHHHHHHhhccCCEEEEEe
Confidence 11 3577889999999987653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 392 | ||||
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 6e-06 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 9e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-05 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.003 |
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 45.3 bits (106), Expect = 6e-06
Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 20/183 (10%)
Query: 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER-----NITIVTTSMNLNGPFNNF 275
+ F ++ V KP I +D G G + +M T + + L
Sbjct: 15 VSFLVNTVWKITKPVHI---VDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL 71
Query: 276 IASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGLF 334
++ ++ DI L + P T+L + ++ GG
Sbjct: 72 FRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQ----KMIHSVKKGGKI 127
Query: 335 ------WLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKP 388
W+ + E I+ KL ++ + + L E
Sbjct: 128 ICFEPHWISNMASYLLDGEK-QSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELG 186
Query: 389 FLD 391
+
Sbjct: 187 VKN 189
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.6 bits (104), Expect = 9e-06
Identities = 17/130 (13%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMN------------LNGPF 272
+ +L + LD+ G ++ ++E ++ + +
Sbjct: 48 LLGLLRQHGCHRV---LDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE 104
Query: 273 NNFIASRGVVPLYISISQRLPFFDNTLDIVHS----MHVLSNWIPTTLLHFLMFDIYRVL 328
F ++++ + +P D ++ H+ + + + +I ++
Sbjct: 105 PAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV 164
Query: 329 RPGGLFWLDH 338
RPGGL +DH
Sbjct: 165 RPGGLLVIDH 174
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 43.9 bits (102), Expect = 1e-05
Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 3/149 (2%)
Query: 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASRGVV 282
++E+ +R LD+ G + + ER + + + R +
Sbjct: 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK 89
Query: 283 PLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342
++ F N D V + L L + L+PGG+F D F C
Sbjct: 90 IEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD-FPCW 148
Query: 343 GAQLEDVYVPLIESVGFNKLKWVVGRKLD 371
D V E G KL + R+++
Sbjct: 149 FYGGRDGPVVWNEQKGEEKLVIMDWREVE 177
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 42.6 bits (99), Expect = 2e-05
Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 7/132 (5%)
Query: 212 WTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGP 271
+T+K G + PG LD+G G ++ + + N
Sbjct: 9 FTEKYGLTRTHSDVLAAAKVVAPGRT---LDLGCGNGRNSLYLAANGYDVTAWDKNPASM 65
Query: 272 FNNFIASRGVVPLYISISQRL---PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVL 328
N + FD D + S V+ ++ + L+ ++ R
Sbjct: 66 ANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM-MFLEAQTIPGLIANMQRCT 124
Query: 329 RPGGLFWLDHFF 340
+PGG +
Sbjct: 125 KPGGYNLIVAAM 136
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 36.6 bits (83), Expect = 0.003
Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 4/116 (3%)
Query: 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASRGVV 282
I E LD+ G + + N V S + N S+G+
Sbjct: 27 IIEKCVENNLVFDDY-LDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK 85
Query: 283 PLYISISQRLPFFDNTLDIVHSM-HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337
P + D++ + I + L + L+ GG+F D
Sbjct: 86 PRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 392 | |||
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.84 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.76 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.73 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.72 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.69 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.67 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.66 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.66 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.65 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.64 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.64 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.64 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.63 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.63 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.62 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.57 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.56 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.55 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.54 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.53 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.53 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.5 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.49 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.48 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.48 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.4 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.39 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.39 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.39 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.38 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.36 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.35 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.29 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.29 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.25 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.22 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.21 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.21 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.2 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.18 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.18 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.18 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.17 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.12 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.08 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.02 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.99 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.99 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.98 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.98 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.93 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.76 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.67 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.66 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.56 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.54 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.54 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.54 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.5 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.39 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.35 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.34 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.32 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.31 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.31 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.3 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.24 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.21 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.17 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.06 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.04 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.91 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.88 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.86 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.83 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.82 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.8 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.77 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.74 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.6 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.57 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.49 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.43 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.35 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.32 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.26 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.21 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.18 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 96.86 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.81 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 96.79 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 96.73 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.71 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 96.65 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.58 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.57 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.99 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.67 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.36 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.22 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.94 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.61 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.49 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.99 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.3 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.24 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.84 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.82 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.68 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 91.62 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.58 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.52 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.39 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 91.25 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.2 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.97 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 90.79 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 89.36 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 89.15 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 89.02 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.56 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 88.28 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 87.43 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 87.2 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 85.76 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 84.52 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.45 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 84.36 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 84.23 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 83.47 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.01 |
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=3.6e-22 Score=188.47 Aligned_cols=170 Identities=19% Similarity=0.253 Sum_probs=123.5
Q ss_pred CCChHH-HHHHHHHcCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCcchhhhccccCCCCCCCCc
Q 047630 122 CPDDEL-LAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKD 200 (392)
Q Consensus 122 Cp~~~~-l~~~~~~~~C~~~~~r~c~~~~p~~y~~p~p~p~s~~~~p~d~~~~W~~y~~~~~~~L~~~~~~~~~~~~c~~ 200 (392)
||.|.+ |........|+ ++|+|+.+++||++++|-+.+.+..|++++..|
T Consensus 4 CP~C~~~L~~~~~~l~C~---~~h~fd~~~~Gy~~ll~~~~~~~~~~~~~~~~~-------------------------- 54 (268)
T d1p91a_ 4 CPLCHQPLSREKNSYICP---QRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMM-------------------------- 54 (268)
T ss_dssp CTTTCCBCEEETTEEECT---TCCEEEBCTTSCEECSCSSSSCSCCCSSSHHHH--------------------------
T ss_pred CCCCChhhhcCCCeEECC---CCCccccccCceEecccccccccCCCCCCHHHH--------------------------
Confidence 999987 66555668896 789999999999999988887776666654222
Q ss_pred ccccccccccceeccCCCCc-HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHH
Q 047630 201 CFDLQGVEKIRWTQKKGNGG-LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIA 277 (392)
Q Consensus 201 cFd~~~~e~~~w~~~~~~~~-~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa 277 (392)
.+++.|+..+.... .+.+++.+....+. +-..|||||||+|.++..|++.+ ..++| +|++..+...+.
T Consensus 55 ------~ar~~~l~~g~~~~l~~~~~~~l~~~~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~~~g--iD~s~~~~~~a~ 125 (268)
T d1p91a_ 55 ------QARRAFLDAGHYQPLRDAIVAQLRERLDD-KATAVLDIGCGEGYYTHAFADALPEITTFG--LDVSKVAIKAAA 125 (268)
T ss_dssp ------HHHHHHHTTTTTHHHHHHHHHHHHHHSCT-TCCEEEEETCTTSTTHHHHHHTCTTSEEEE--EESCHHHHHHHH
T ss_pred ------HHHHHHHHcCchHHHHHHHHHHHHHhcCC-CCCEEEEeCCCCcHHHHHHHHHCCCCEEEE--ecchHhhhhhhh
Confidence 33445554443211 23333333333332 22345999999999999999974 56667 556455555555
Q ss_pred hcC-CccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 278 SRG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 278 ~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
++. .+.+.++|+.++|+++++||+|++.+++++ ++|+.|+|||||+|++...
T Consensus 126 ~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~----------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 126 KRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK----------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp HHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC----------HHHHHHHEEEEEEEEEEEE
T ss_pred cccccccceeeehhhccCCCCCEEEEeecCCHHH----------HHHHHHHhCCCcEEEEEee
Confidence 543 578999999999999999999999988766 3789999999999999865
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.79 E-value=3.1e-19 Score=162.43 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLPF 294 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lpf 294 (392)
...+++. +.+.++.+| ||||||+|.++..+++.+.+++|+| ++..+.+.+. +.+ .+++++++.+++|+
T Consensus 4 ~~~ll~~-~~l~~~~rV---LDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~ 77 (231)
T d1vl5a_ 4 LAKLMQI-AALKGNEEV---LDVATGGGHVANAFAPFVKKVVAFD--LTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 77 (231)
T ss_dssp HHHHHHH-HTCCSCCEE---EEETCTTCHHHHHHGGGSSEEEEEE--SCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS
T ss_pred HHHHHHh-cCCCCcCEE---EEecccCcHHHHHHHHhCCEEEEEE--CCHHHHhhhhhcccccccccccccccccccccc
Confidence 3444443 557777777 9999999999999999999998855 5445444332 223 37899999999999
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc---------------------hHHHHHHH
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------------------LEDVYVPL 353 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------------------l~~~l~~l 353 (392)
++++||+|+|..+++|+. +.+.++++++|+|||||+|++.++...... ..+++.++
T Consensus 78 ~~~~fD~v~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (231)
T d1vl5a_ 78 TDERFHIVTCRIAAHHFP---NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKM 154 (231)
T ss_dssp CTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred cccccccccccccccccC---CHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHH
Confidence 999999999999999983 345699999999999999998765432211 04668899
Q ss_pred HHHcCCeEEEEE
Q 047630 354 IESVGFNKLKWV 365 (392)
Q Consensus 354 l~~aGf~~i~w~ 365 (392)
++++||+.++..
T Consensus 155 l~~aGf~~~~~~ 166 (231)
T d1vl5a_ 155 LEEAGFELEELH 166 (231)
T ss_dssp HHHHTCEEEEEE
T ss_pred HHHCCCEEEEEE
Confidence 999999887644
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=2.2e-18 Score=158.01 Aligned_cols=133 Identities=15% Similarity=0.237 Sum_probs=103.6
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCCCCCC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLPFFDN 297 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lpf~d~ 297 (392)
++-+.+.++++.+| ||||||+|.++..|++++.+++| +|++..+.+.+. +++ .+.++++|++.+|++++
T Consensus 7 ~l~~~~~~~~~~rI---LDiGcGtG~~~~~la~~~~~v~g--vD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~ 81 (234)
T d1xxla_ 7 LMIKTAECRAEHRV---LDIGAGAGHTALAFSPYVQECIG--VDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 81 (234)
T ss_dssp HHHHHHTCCTTCEE---EEESCTTSHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred HHHHHhCCCCCCEE---EEeCCcCcHHHHHHHHhCCeEEE--EeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence 34455668888888 99999999999999999999988 555445444332 233 37889999999999999
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccch---------------------HHHHHHHHHH
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL---------------------EDVYVPLIES 356 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l---------------------~~~l~~ll~~ 356 (392)
+||+|+|..+++|+. +...++++++|+|||||++++.++....... ...+..++++
T Consensus 82 ~fD~v~~~~~l~~~~---d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T d1xxla_ 82 SFDIITCRYAAHHFS---DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSA 158 (234)
T ss_dssp CEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred ccceeeeeceeeccc---CHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHH
Confidence 999999999999873 3457999999999999999887654332111 4558889999
Q ss_pred cCCeEEEE
Q 047630 357 VGFNKLKW 364 (392)
Q Consensus 357 aGf~~i~w 364 (392)
+||.....
T Consensus 159 ~gf~~~~~ 166 (234)
T d1xxla_ 159 NQLAYQDI 166 (234)
T ss_dssp TTEEEEEE
T ss_pred CCCceeEE
Confidence 99976543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.73 E-value=1.5e-17 Score=156.83 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=99.4
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+.++.+| ||||||+|.++..|+++ +..|+|+| ++..+.+.+. ..| .+.++++++.++|+++++||+|
T Consensus 65 l~~~~~v---LDiGcG~G~~~~~la~~~~~~v~gvD--~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V 139 (282)
T d2o57a1 65 LQRQAKG---LDLGAGYGGAARFLVRKFGVSIDCLN--IAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI 139 (282)
T ss_dssp CCTTCEE---EEETCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCEE---EEeCCCCcHHHhhhhccCCcEEEEEe--ccchhhhhhhcccccccccccccccccccccccccccccchh
Confidence 3455556 99999999999999985 88998855 5344443332 223 3789999999999999999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----c--------------hHHHHHHHHHHcCCeEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----Q--------------LEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----~--------------l~~~l~~ll~~aGf~~i~w 364 (392)
++..+++|+. +...++++++|+|||||+|++.++..... . ..+.+.++++++||+.+.+
T Consensus 140 ~~~~~l~h~~---d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~ 216 (282)
T d2o57a1 140 WSQDAFLHSP---DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 216 (282)
T ss_dssp EEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred hccchhhhcc---CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEE
Confidence 9999999984 44569999999999999999887533211 0 1466889999999999887
Q ss_pred EE
Q 047630 365 VV 366 (392)
Q Consensus 365 ~~ 366 (392)
..
T Consensus 217 ~d 218 (282)
T d2o57a1 217 FS 218 (282)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=3.3e-17 Score=146.95 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=99.6
Q ss_pred HHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEc
Q 047630 226 DEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 226 ~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
..+..+.++++| ||||||+|.++..+++ ++| +|++..+.+.+.+++ +.+++++++.+|+++++||+|++.
T Consensus 29 ~~~~~~~~~~~v---LDiGcG~G~~~~~~~~----~~g--iD~s~~~~~~a~~~~-~~~~~~d~~~l~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 29 QAVKCLLPEGRG---VEIGVGTGRFAVPLKI----KIG--VEPSERMAEIARKRG-VFVLKGTAENLPLKDESFDFALMV 98 (208)
T ss_dssp HHHHHHCCSSCE---EEETCTTSTTHHHHTC----CEE--EESCHHHHHHHHHTT-CEEEECBTTBCCSCTTCEEEEEEE
T ss_pred HHHHhhCCCCeE---EEECCCCcccccccce----EEE--EeCChhhcccccccc-cccccccccccccccccccccccc
Confidence 334455666666 9999999999988863 456 566455555555555 799999999999999999999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------------c----hHHHHHHHHHHcCCeEEEEE
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------------Q----LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------------~----l~~~l~~ll~~aGf~~i~w~ 365 (392)
.+++|+. +...++++++|+|||||.+++........ . ..+++.++++++||+.++..
T Consensus 99 ~~l~h~~---d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 99 TTICFVD---DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp SCGGGSS---CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred ccccccc---ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 9999983 35579999999999999999887532110 0 16679999999999998765
Q ss_pred E
Q 047630 366 V 366 (392)
Q Consensus 366 ~ 366 (392)
.
T Consensus 176 ~ 176 (208)
T d1vlma_ 176 Q 176 (208)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=8.1e-17 Score=146.51 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=99.7
Q ss_pred cEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc----C--CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 238 RIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR----G--VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r----g--~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
..|||||||+|.++..+++. +.+|+| +|++..+.+.+.++ + .+.++++|++.+++++++||+|++..+++|
T Consensus 62 ~~vLDiGcG~G~~~~~l~~~~~~~v~~--vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h 139 (222)
T d2ex4a1 62 SCALDCGAGIGRITKRLLLPLFREVDM--VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 139 (222)
T ss_dssp SEEEEETCTTTHHHHHTTTTTCSEEEE--EESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CEEEEeccCCCHhhHHHHHhcCCEEEE--eecCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 34599999999999998765 457888 55645555544433 2 257899999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccc-----------hHHHHHHHHHHcCCeEEEEEEe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ-----------LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~-----------l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+ +++.+.+++++++++|||||.+++.+....... ..+.+.++++++||++++.+..
T Consensus 140 ~-~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q 206 (222)
T d2ex4a1 140 L-TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 206 (222)
T ss_dssp S-CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred c-hhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence 5 555567899999999999999998875443221 2677999999999999987744
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=8.3e-17 Score=148.46 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=101.3
Q ss_pred HHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCCCC
Q 047630 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPFFD 296 (392)
Q Consensus 225 I~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf~d 296 (392)
+.+.+.+.++.+| ||||||+|.++..+++. +..|+| +|++..+.+.+. +.| .++++++|+..+ +++
T Consensus 25 l~~~~~l~pg~~V---LDiGCG~G~~~~~la~~~~~~v~G--vD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~ 98 (245)
T d1nkva_ 25 LGRVLRMKPGTRI---LDLGSGSGEMLCTWARDHGITGTG--IDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VAN 98 (245)
T ss_dssp HHHHTCCCTTCEE---EEETCTTCHHHHHHHHHTCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCS
T ss_pred HHHHcCCCCCCEE---EEEcCCCCHHHHHHHHhcCCEEEE--EecccchhhHHHHHHHHhhccccchhhhhHHhhc-ccc
Confidence 4455667787777 99999999999999884 788888 455445544332 334 378999999998 468
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc------------------cchHHHHHHHHHHcC
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------------AQLEDVYVPLIESVG 358 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------------------~~l~~~l~~ll~~aG 358 (392)
++||+|+|..+++|+.+ ...++++++|+|||||++++.+..... ......+...++++|
T Consensus 99 ~~fD~v~~~~~~~~~~d---~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG 175 (245)
T d1nkva_ 99 EKCDVAACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLG 175 (245)
T ss_dssp SCEEEEEEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTT
T ss_pred CceeEEEEEehhhccCC---HHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcC
Confidence 99999999999999844 346999999999999999998653111 011456889999999
Q ss_pred CeEEEEEEe
Q 047630 359 FNKLKWVVG 367 (392)
Q Consensus 359 f~~i~w~~~ 367 (392)
|+.+.....
T Consensus 176 ~~~v~~~~~ 184 (245)
T d1nkva_ 176 YDVVEMVLA 184 (245)
T ss_dssp BCCCEEEEC
T ss_pred CEEEEEEeC
Confidence 998766543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.66 E-value=5.4e-16 Score=144.63 Aligned_cols=129 Identities=13% Similarity=0.140 Sum_probs=99.5
Q ss_pred cccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 236 TIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
....|||+|||+|.++..|+.+ ...|++ +|++..+.+.+.++ ..+.+++++++.+++++++||+|++..+++|
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~--vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h 170 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDL--LEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEE--EESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEE--EcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccc
Confidence 3345599999999999998865 456878 55645555555433 2367889999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeeccccc------------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+ +++++..+|++++++|||||+|++.+.....+ ...+.+.++++++||++++....
T Consensus 171 l-~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 171 L-TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp S-CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred c-chhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEee
Confidence 6 55556789999999999999999987533211 11567999999999999987643
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.2e-15 Score=139.99 Aligned_cols=98 Identities=21% Similarity=0.318 Sum_probs=77.0
Q ss_pred ccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC-CccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 237 IRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.+.|||||||+|.++..|++.+..++|+ |++..+.+.+.+ ++ .+.++++|+++++++ ++||+|+|.+...++
T Consensus 42 ~~~iLDiGcGtG~~~~~l~~~~~~v~gv--D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 42 VRRVLDLACGTGIPTLELAERGYEVVGL--DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCEEEEeCCCCCccchhhcccceEEEEE--eeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 3455999999999999999999999985 554444443332 23 478999999999986 589999998544343
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
.+.+++.++|++++++|||||+|+++
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 56667789999999999999999875
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=3.2e-16 Score=140.87 Aligned_cols=103 Identities=23% Similarity=0.381 Sum_probs=83.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC-CccEEEeccCcCCCCCCcccEEEEc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG-VVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg-~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
+.++++| ||||||+|.++..+++.+..++|+| +++.+.+.+.+ .+ .+.++++|+..+++++++||+|+|.
T Consensus 35 l~~~~~I---LDiGcG~G~~~~~la~~~~~v~giD--~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~ 109 (226)
T d1ve3a1 35 MKKRGKV---LDLACGVGGFSFLLEDYGFEVVGVD--ISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFI 109 (226)
T ss_dssp CCSCCEE---EEETCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred cCCCCEE---EEECCCcchhhhhHhhhhccccccc--ccccchhhhhhhhccccccccccccccccccccCcCceEEEEe
Confidence 3455555 9999999999999999999999955 54455544333 23 3677889999999999999999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.+++|+ +..++.++|+++.|+|||||+|++...
T Consensus 110 ~~l~~~-~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 110 DSIVHF-EPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp SCGGGC-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhC-ChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 999885 556678899999999999999988754
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.64 E-value=1.1e-15 Score=139.27 Aligned_cols=136 Identities=17% Similarity=0.122 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc--CCccEEEeccCcCCCCCCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR--GVVPLYISISQRLPFFDNT 298 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r--g~i~~~~~d~~~Lpf~d~s 298 (392)
.++.+..+.....+++| ||||||+|.++..+++.+.+|+|+| ++..+.+.+.++ ..+.++.++.+.+++ +++
T Consensus 8 ~~~~~~~~~~~~~~~~V---LDiGcG~G~~~~~l~~~g~~v~giD--~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~ 81 (225)
T d2p7ia1 8 HPFMVRAFTPFFRPGNL---LELGSFKGDFTSRLQEHFNDITCVE--ASEEAISHAQGRLKDGITYIHSRFEDAQL-PRR 81 (225)
T ss_dssp HHHHHHHHGGGCCSSCE---EEESCTTSHHHHHHTTTCSCEEEEE--SCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSC
T ss_pred HHHHHHHhhhhCCCCcE---EEEeCCCcHHHHHHHHcCCeEEEEe--CcHHHhhhhhccccccccccccccccccc-ccc
Confidence 35556666666666777 9999999999999999999999854 534454544443 237888899888876 678
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHH-HcccCCcEEEEEeeccc---------------cc--------------chHH
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIY-RVLRPGGLFWLDHFFCV---------------GA--------------QLED 348 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~-RvLKPGG~lii~~~~~~---------------~~--------------~l~~ 348 (392)
||+|++..+++|+.+ ...+|.++. |+|||||.+++...... .. -..+
T Consensus 82 fD~I~~~~vleh~~d---~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 158 (225)
T d2p7ia1 82 YDNIVLTHVLEHIDD---PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALD 158 (225)
T ss_dssp EEEEEEESCGGGCSS---HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHH
T ss_pred cccccccceeEecCC---HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHH
Confidence 999999999999843 346899998 89999999998753100 00 0156
Q ss_pred HHHHHHHHcCCeEEEEE
Q 047630 349 VYVPLIESVGFNKLKWV 365 (392)
Q Consensus 349 ~l~~ll~~aGf~~i~w~ 365 (392)
.+.++++++||+++...
T Consensus 159 ~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 159 TLERDASRAGLQVTYRS 175 (225)
T ss_dssp HHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCEEEEEE
Confidence 79999999999987754
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.64 E-value=1.7e-15 Score=139.25 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=79.1
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC-CccEEEeccCcCCCCCCcccEEEEc-ccccccC
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG-VVPLYISISQRLPFFDNTLDIVHSM-HVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg-~i~~~~~d~~~Lpf~d~sFDlV~s~-~~l~~~~ 312 (392)
+|||||||+|.++..|++.|.+++| +|+++.+.+.+.+ .+ .+.++++|+..+++ +++||+|+|. .+++++.
T Consensus 40 ~vLDiGCG~G~~~~~l~~~g~~v~G--vD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~ 116 (246)
T d1y8ca_ 40 DYLDLACGTGNLTENLCPKFKNTWA--VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNYII 116 (246)
T ss_dssp EEEEETCTTSTTHHHHGGGSSEEEE--ECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGGCC
T ss_pred eEEEEeCcCCHHHHHHHHhCCccEe--eccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeeeccC
Confidence 4599999999999999999999998 6665555554433 23 47899999998886 5689999987 5777777
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEE
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
..+++..+|++++++|||||.|+++
T Consensus 117 ~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 117 DSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 8888899999999999999999864
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.64 E-value=2e-15 Score=134.77 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=100.9
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcCCCCCC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRLPFFDN 297 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~Lpf~d~ 297 (392)
.+..+ ....+++| ||||||+|..+..|+++|.+|+++| ++..+.+. +.+.+ .+.+.+.|...+++ ++
T Consensus 22 ~~~~~-~~~~~grv---LDiGcG~G~~~~~la~~g~~v~gvD--~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~ 94 (198)
T d2i6ga1 22 VLAAA-KVVAPGRT---LDLGCGNGRNSLYLAANGYDVTAWD--KNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DG 94 (198)
T ss_dssp HHHHH-TTSCSCEE---EEETCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CC
T ss_pred HHHHc-ccCCCCcE---EEECCCCCHHHHHHHHHhhhhcccc--CcHHHHHHHHHHhhhccccchhhhheecccccc-cc
Confidence 44433 33344566 9999999999999999999999955 53344432 23333 25778888888875 78
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccch----------HHHHHHHHHHcCCeEEEEEEe
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL----------EDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l----------~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+||+|++..+++|+ ++..+.++++++.++|||||++++..+....... ..++.+.+ .||+.+.....
T Consensus 95 ~fD~I~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~--~~~~i~~~~e~ 171 (198)
T d2i6ga1 95 EYDFILSTVVMMFL-EAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYY--EGWDMLKYNED 171 (198)
T ss_dssp CEEEEEEESCGGGS-CTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------CCCCBCTTHHHHHT--TTSEEEEEEEE
T ss_pred cccEEEEeeeeecC-CHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCCCCCCCccCHHHHHHHh--CCCeEEEeeec
Confidence 89999999999885 6667789999999999999999887654221100 22344444 46887754422
Q ss_pred e----ccCC-CCcccceeeEEEEEcC
Q 047630 368 R----KLDR-GPELREMYLSALLEKP 388 (392)
Q Consensus 368 ~----k~d~-~~~~~e~ylsai~~Kp 388 (392)
. ..+. +......+...+.|||
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~varK~ 197 (198)
T d2i6ga1 172 VGELHRTDENGNRIKLRFATMLARKT 197 (198)
T ss_dssp ECCC------------EEEEEEEECC
T ss_pred cceeeecCCCCcEeeEEEEEEEEEeC
Confidence 1 1111 1122334556788887
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=3.9e-16 Score=142.15 Aligned_cols=95 Identities=25% Similarity=0.365 Sum_probs=79.8
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEc-ccccccCCchhHH
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSM-HVLSNWIPTTLLH 318 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~-~~l~~~~~~~~l~ 318 (392)
|||+|||+|.++..|++.+.+|+| +|++..+.+.+.+++...++.++++++|+++++||+|+|. .+++|+.+ ..
T Consensus 46 vLDiGcG~G~~~~~l~~~~~~v~g--iD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d---~~ 120 (246)
T d2avna1 46 VLDLGGGTGKWSLFLQERGFEVVL--VDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN---KD 120 (246)
T ss_dssp EEEETCTTCHHHHHHHTTTCEEEE--EESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC---HH
T ss_pred EEEECCCCchhcccccccceEEEE--eecccccccccccccccccccccccccccccccccceeeecchhhhhhh---HH
Confidence 399999999999999999999999 5554566667777776678899999999999999999987 56777633 34
Q ss_pred HHHHHHHHcccCCcEEEEEee
Q 047630 319 FLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~ 339 (392)
++|+++.|+|||||+++++..
T Consensus 121 ~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 121 KAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHhhcCcCcEEEEEEC
Confidence 699999999999999988753
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.63 E-value=2.3e-15 Score=139.79 Aligned_cols=130 Identities=20% Similarity=0.260 Sum_probs=94.0
Q ss_pred CcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcC---CccEEEeccCcCCCCCCcccEEEEccc
Q 047630 235 GTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
...++|||||||+|.++..++++.+.+.++++|+ +...+ .+.+.+ .+.++.+|... +. ..+||+|++..+
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~-~~~~D~v~~~~v 155 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL-PRKADAIILSFV 155 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-SSCEEEEEEESC
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hc-ccchhheeeccc
Confidence 4455669999999999999999755444444665 33333 233333 37788888754 22 357999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------------------chHHHHHHHHHHcCCeEEEEE
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------------------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------------------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+|+| +++....+|++++|+|||||+|+|.+.....+ ...++|.++++++||++++..
T Consensus 156 lh~~-~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~ 234 (253)
T d1tw3a2 156 LLNW-PDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 234 (253)
T ss_dssp GGGS-CHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cccC-CchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 9997 44555689999999999999999887532111 115679999999999998876
Q ss_pred Eee
Q 047630 366 VGR 368 (392)
Q Consensus 366 ~~~ 368 (392)
...
T Consensus 235 ~~~ 237 (253)
T d1tw3a2 235 QLP 237 (253)
T ss_dssp EEE
T ss_pred ECC
Confidence 543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.62 E-value=3.8e-15 Score=135.36 Aligned_cols=125 Identities=16% Similarity=0.214 Sum_probs=91.2
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHH----cCCEEEEEecCCCchhHHHHHhc----C-C--ccEEEeccCcCCCCCCccc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMME----RNITIVTTSMNLNGPFNNFIASR----G-V--VPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~----~g~~vvg~~iD~~a~~~~~aa~r----g-~--i~~~~~d~~~Lpf~d~sFD 300 (392)
.++++| ||||||+|..+..+++ .+.+++| +|++..+.+.+.++ + . +.+..++...+ +.+.+|
T Consensus 38 ~~~~~v---LDlGCGtG~~~~~l~~~~~~~~~~v~g--iD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~--~~~~~d 110 (225)
T d1im8a_ 38 TADSNV---YDLGCSRGAATLSARRNINQPNVKIIG--IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--EIKNAS 110 (225)
T ss_dssp CTTCEE---EEESCTTCHHHHHHHHTCCCSSCEEEE--ECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC--CCCSEE
T ss_pred CCCCEE---EEeccchhhHHHHHHHhhcCCCCceEE--eCCCHHHHHHHHHHhHhhcccchhhhccchhhcc--ccccce
Confidence 455556 9999999999999987 4678888 66755666655432 2 2 33444555544 456799
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc-----------------------------------
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ----------------------------------- 345 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~----------------------------------- 345 (392)
+|++..++|+ .+.++...+|++++|+|||||.|++.+.......
T Consensus 111 ~i~~~~~l~~-~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T d1im8a_ 111 MVILNFTLQF-LPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVM 189 (225)
T ss_dssp EEEEESCGGG-SCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHC
T ss_pred eeEEeeeccc-cChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 9999999977 4666777999999999999999999865321110
Q ss_pred ---hHHHHHHHHHHcCCeEEEE
Q 047630 346 ---LEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 346 ---l~~~l~~ll~~aGf~~i~w 364 (392)
-.+++.++++++||+.++.
T Consensus 190 ~~~s~~~~~~~L~~aGF~~v~~ 211 (225)
T d1im8a_ 190 RTDSIETHKVRLKNVGFSQVEL 211 (225)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEE
T ss_pred CCCCHHHHHHHHHHcCCCceEE
Confidence 1456889999999998764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=9.8e-15 Score=136.28 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=100.8
Q ss_pred HHHHHHHHHhh-CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC-ccEEEeccCcCCC
Q 047630 221 LDFSIDEVLAT-KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRGV-VPLYISISQRLPF 294 (392)
Q Consensus 221 ~~~lI~~ll~l-~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~-i~~~~~d~~~Lpf 294 (392)
.+..++.+... .++.+| ||+|||+|.++..+++.|.+|+|+|+|. .+.+ ++..++. +.+.+++... .+
T Consensus 107 T~l~l~~l~~~~~~g~~V---LDiGcGsG~l~i~aa~~g~~V~gvDis~--~av~~A~~na~~n~~~~~~~~~d~~~-~~ 180 (254)
T d2nxca1 107 TRLALKALARHLRPGDKV---LDLGTGSGVLAIAAEKLGGKALGVDIDP--MVLPQAEANAKRNGVRPRFLEGSLEA-AL 180 (254)
T ss_dssp HHHHHHHHHHHCCTTCEE---EEETCTTSHHHHHHHHTTCEEEEEESCG--GGHHHHHHHHHHTTCCCEEEESCHHH-HG
T ss_pred hhHHHHHHHhhcCccCEE---EEcccchhHHHHHHHhcCCEEEEEECCh--HHHHHHHHHHHHcCCceeEEeccccc-cc
Confidence 34445555443 455555 9999999999999999999999966655 3333 3333442 5677777654 35
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCC
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGP 374 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~ 374 (392)
++++||+|+++...+. +..++.++.|+|||||+|+++.+.... .+.+.+.+++.||+.++..
T Consensus 181 ~~~~fD~V~ani~~~~------l~~l~~~~~~~LkpGG~lilSgil~~~---~~~v~~~~~~~Gf~~~~~~--------- 242 (254)
T d2nxca1 181 PFGPFDLLVANLYAEL------HAALAPRYREALVPGGRALLTGILKDR---APLVREAMAGAGFRPLEEA--------- 242 (254)
T ss_dssp GGCCEEEEEEECCHHH------HHHHHHHHHHHEEEEEEEEEEEEEGGG---HHHHHHHHHHTTCEEEEEE---------
T ss_pred cccccchhhhcccccc------HHHHHHHHHHhcCCCcEEEEEecchhh---HHHHHHHHHHCCCEEEEEE---------
Confidence 5789999999755433 457899999999999999998876533 3457888999999987654
Q ss_pred cccceeeEEEEEc
Q 047630 375 ELREMYLSALLEK 387 (392)
Q Consensus 375 ~~~e~ylsai~~K 387 (392)
..++| ...+++|
T Consensus 243 ~~~~W-v~l~~~r 254 (254)
T d2nxca1 243 AEGEW-VLLAYGR 254 (254)
T ss_dssp EETTE-EEEEEEC
T ss_pred EECCE-EEEEEeC
Confidence 23455 4567776
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=1.9e-14 Score=136.85 Aligned_cols=133 Identities=12% Similarity=0.108 Sum_probs=96.7
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHH----HHHhcCCccEEEeccCcCCCCCCcccEEEE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNN----FIASRGVVPLYISISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~----~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s 304 (392)
++.++.+| ||||||.|.++.++++ .|..|+|++++ ....+ .+.+.++...+.....+.++.+++||.|++
T Consensus 58 ~l~~G~~V---LDiGCG~G~~~~~~a~~~g~~v~git~s--~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~s 132 (291)
T d1kpia_ 58 NLEPGMTL---LDIGCGWGSTMRHAVAEYDVNVIGLTLS--ENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVS 132 (291)
T ss_dssp CCCTTCEE---EEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEE
T ss_pred CCCCCCEE---EEecCcchHHHHHHHHhcCcceeeccch--HHHHHHHHHHHHhhccchhhhhhhhcccccccccceEee
Confidence 46677777 9999999999999986 68999985544 34433 334445422222223334567899999999
Q ss_pred cccccccCCc------hhHHHHHHHHHHcccCCcEEEEEeeccccc-----------------------------ch--H
Q 047630 305 MHVLSNWIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-----------------------------QL--E 347 (392)
Q Consensus 305 ~~~l~~~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~-----------------------------~l--~ 347 (392)
..++.|+.+. +..+.++++++|+|||||++++..+..... .+ .
T Consensus 133 ie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~ 212 (291)
T d1kpia_ 133 LGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRI 212 (291)
T ss_dssp ESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCH
T ss_pred chhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCH
Confidence 9999997653 456789999999999999999877542111 11 4
Q ss_pred HHHHHHHHHcCCeEEEEEEe
Q 047630 348 DVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 348 ~~l~~ll~~aGf~~i~w~~~ 367 (392)
.++..+++++||++..|...
T Consensus 213 ~~~~~~~e~~gl~v~~~~~~ 232 (291)
T d1kpia_ 213 SQVDYYSSNAGWKVERYHRI 232 (291)
T ss_dssp HHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHhhhcccccccceeeec
Confidence 56788899999999999754
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.6e-14 Score=129.45 Aligned_cols=138 Identities=13% Similarity=-0.008 Sum_probs=100.3
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-----------------------
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----------------------- 279 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----------------------- 279 (392)
.++..++.+.++++| ||+|||+|..+..|++.|.+|+| +|++....+.+.++
T Consensus 35 ~~~~~~l~~~~~~rv---Ld~GCG~G~~a~~LA~~G~~V~g--vD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (229)
T d2bzga1 35 KHLDTFLKGKSGLRV---FFPLCGKAVEMKWFADRGHSVVG--VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSS 109 (229)
T ss_dssp HHHHHHHTTCCSCEE---EETTCTTCTHHHHHHHTTCEEEE--ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred HHHHHhcCCCCCCEE---EEeCCCCcHHHHHHHhCCCcEEE--EeCCHHHHHHHHHHhhccccccchhcccccceeeecC
Confidence 345555656666666 99999999999999999999999 55644444433322
Q ss_pred CCccEEEeccCcCC-CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc--------hHHHH
Q 047630 280 GVVPLYISISQRLP-FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ--------LEDVY 350 (392)
Q Consensus 280 g~i~~~~~d~~~Lp-f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~--------l~~~l 350 (392)
..+.++++|...++ ...+.||+|+...+++++ .++..+.+++++.|+|||||++++..+...... ..+++
T Consensus 110 ~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~-~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el 188 (229)
T d2bzga1 110 GNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI-NPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEI 188 (229)
T ss_dssp SSEEEEESCGGGGGGSCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHH
T ss_pred CcEEEEEcchhhccccccCceeEEEEEEEEEec-cchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHH
Confidence 12567788877764 567899999999999885 556678999999999999999888876432211 25667
Q ss_pred HHHHHHcCCeEEEEEEe
Q 047630 351 VPLIESVGFNKLKWVVG 367 (392)
Q Consensus 351 ~~ll~~aGf~~i~w~~~ 367 (392)
.+++.. +|.+..++..
T Consensus 189 ~~lf~~-~~~i~~le~~ 204 (229)
T d2bzga1 189 ERLFGK-ICNIRCLEKV 204 (229)
T ss_dssp HHHHTT-TEEEEEEEEE
T ss_pred HHHhcC-CCEEEEEEEe
Confidence 888865 5766555543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.54 E-value=2.8e-14 Score=132.97 Aligned_cols=131 Identities=24% Similarity=0.228 Sum_probs=92.4
Q ss_pred CcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCcccEEEEccc
Q 047630 235 GTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
..+++|||||||+|.++..++++.+.+.++.+|+ +...+. +++.+ .+.+..++... +.+ ..||+|++.++
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~v 156 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFV 156 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESC
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhcccc
Confidence 3455669999999999999999754433334665 443332 22333 35667777654 443 45999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-----------------------chHHHHHHHHHHcCCeEEEE
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-----------------------QLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-----------------------~l~~~l~~ll~~aGf~~i~w 364 (392)
+|+| +++...++|++++|+|||||+|+|.++..... ...++|.++++++||+.++.
T Consensus 157 Lh~~-~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~ 235 (256)
T d1qzza2 157 LLNW-SDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 235 (256)
T ss_dssp GGGS-CHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccc-CcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEE
Confidence 9997 44555689999999999999998887532110 11567999999999999987
Q ss_pred EEeec
Q 047630 365 VVGRK 369 (392)
Q Consensus 365 ~~~~k 369 (392)
.....
T Consensus 236 ~~~~~ 240 (256)
T d1qzza2 236 RTSGS 240 (256)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 75543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.53 E-value=7.8e-15 Score=138.40 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=90.7
Q ss_pred cEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhc----C-CccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 238 RIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
..|||||||+|.++..+++. +..++|+ |++..+.+.+.++ + .+.+.++|+..++++ ++||+|++..+++
T Consensus 29 ~~ILDiGcG~G~~~~~la~~~~~~~~v~gi--D~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l~ 105 (281)
T d2gh1a1 29 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGI--DSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLL 105 (281)
T ss_dssp CEEEEETCTTTHHHHHHTTTSCTTCEEEEE--ECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCGG
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCCEEEEE--ecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehhhh
Confidence 34499999999999999883 5678885 4534444433322 3 267889999999875 5799999999999
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeecc---------cc---------cch-----------------HHHHHHHH
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC---------VG---------AQL-----------------EDVYVPLI 354 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~---------~~---------~~l-----------------~~~l~~ll 354 (392)
|+.+ ...++++++|+|||||.+++.+... .. ..+ ...+..++
T Consensus 106 ~~~d---~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 182 (281)
T d2gh1a1 106 HMTT---PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYL 182 (281)
T ss_dssp GCSS---HHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTHHHHH
T ss_pred cCCC---HHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9744 4469999999999999998876310 00 000 12355679
Q ss_pred HHcCCeEEEEEEee
Q 047630 355 ESVGFNKLKWVVGR 368 (392)
Q Consensus 355 ~~aGf~~i~w~~~~ 368 (392)
+++||+.++.....
T Consensus 183 ~eaGf~~i~~~~~~ 196 (281)
T d2gh1a1 183 SELGVKNIECRVSD 196 (281)
T ss_dssp HHTTCEEEEEEECC
T ss_pred HHcCCeEEEEEEec
Confidence 99999999877554
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.7e-15 Score=134.59 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=89.9
Q ss_pred cEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc----CC-c-----------------------------
Q 047630 238 RIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR----GV-V----------------------------- 282 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r----g~-i----------------------------- 282 (392)
.+|||||||+|.++..++..+. .|+|+| ++..+.+.+.++ .. +
T Consensus 53 ~~vLDlGcG~G~~~~~~~~~~~~~v~giD--~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (257)
T d2a14a1 53 DTLIDIGSGPTIYQVLAACDSFQDITLSD--FTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 130 (257)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEEEEEEEE--SCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CEEEEECCCCCHhHHHHhccccCcEEEec--CCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence 3459999999999888887655 588855 533444333221 10 0
Q ss_pred --cEEE----eccCcCCCCCCcccEEEEcccccccCC-chhHHHHHHHHHHcccCCcEEEEEeeccccc-----------
Q 047630 283 --PLYI----SISQRLPFFDNTLDIVHSMHVLSNWIP-TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------- 344 (392)
Q Consensus 283 --~~~~----~d~~~Lpf~d~sFDlV~s~~~l~~~~~-~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------- 344 (392)
.... .+....++++++||+|++.+++||+.. .++...+++++.|+|||||+|++..+.....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~ 210 (257)
T d2a14a1 131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV 210 (257)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred hhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccccc
Confidence 0111 122234678899999999999998743 3467789999999999999999987543211
Q ss_pred -chHHHHHHHHHHcCCeEEEEEEee
Q 047630 345 -QLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 345 -~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
-..++++++++++||+++......
T Consensus 211 ~~~~~~~~~~l~~aGf~v~~~~~~~ 235 (257)
T d2a14a1 211 ALEKGEVEQAVLDAGFDIEQLLHSP 235 (257)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEec
Confidence 016779999999999998886554
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.50 E-value=4.7e-14 Score=130.44 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=78.6
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCC-CCCcccEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPF-FDNTLDIV 302 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf-~d~sFDlV 302 (392)
.++.+| ||||||+|..+..+++.+. .++| +|++..+.+.|.++ + .+.+.++|+...++ .+++||+|
T Consensus 23 ~~~~~V---LDlGCG~G~~~~~~~~~~~~~v~G--iD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 23 KRGDSV---LDLGCGKGGDLLKYERAGIGEYYG--VDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CTTCEE---EEETCTTTTTHHHHHHHTCSEEEE--EESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCcCEE---EEecccCcHHHHHHHHcCCCeEEE--ecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEE
Confidence 345556 9999999999999998775 6888 44544555544332 2 26788999877766 47789999
Q ss_pred EEcccccccC-CchhHHHHHHHHHHcccCCcEEEEE
Q 047630 303 HSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 303 ~s~~~l~~~~-~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+|.+++||.. +.+.+..+++++.|+|||||+|+++
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 9999999864 4567788999999999999999875
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=1.2e-13 Score=130.78 Aligned_cols=129 Identities=15% Similarity=0.178 Sum_probs=95.9
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHH----HHhcCC---ccEEEeccCcCCCCCCcccE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNF----IASRGV---VPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~----aa~rg~---i~~~~~d~~~Lpf~d~sFDl 301 (392)
++.++.+| ||||||.|.++.++++ .|++|+|++++ ....+. +++.|+ +.+..+|...++ ++||.
T Consensus 59 ~l~~G~~V---LDiGCG~G~~a~~~a~~~g~~v~git~s--~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~ 130 (285)
T d1kpga_ 59 GLQPGMTL---LDVGCGWGATMMRAVEKYDVNVVGLTLS--KNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDR 130 (285)
T ss_dssp TCCTTCEE---EEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSE
T ss_pred CCCCCCEE---EEecCcchHHHHHHHhcCCcceEEEecc--HHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccc
Confidence 46677777 9999999999999887 68999996654 343332 334443 567777776664 68999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-----------------------------cch--HHHH
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----------------------------AQL--EDVY 350 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----------------------------~~l--~~~l 350 (392)
|++..++.|+.. ...+.+++++.|+|||||++++..+.... ..+ ..++
T Consensus 131 i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~ 209 (285)
T d1kpga_ 131 IVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV 209 (285)
T ss_dssp EEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred eeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhH
Confidence 999999999644 44567999999999999999887754211 001 4557
Q ss_pred HHHHHHcCCeEEEEEEe
Q 047630 351 VPLIESVGFNKLKWVVG 367 (392)
Q Consensus 351 ~~ll~~aGf~~i~w~~~ 367 (392)
..+++++||++..+...
T Consensus 210 ~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 210 QECASANGFTVTRVQSL 226 (285)
T ss_dssp HHHHHTTTCEEEEEEEC
T ss_pred HHHHHHhchhhcccccc
Confidence 78899999999998754
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=6.5e-14 Score=132.36 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=92.3
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHH----HhcCC---ccEEEeccCcCCCCCCcccE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFI----ASRGV---VPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~a----a~rg~---i~~~~~d~~~Lpf~d~sFDl 301 (392)
.+.++.+| ||||||+|.++.++++. |..|+|++++ ....+.+ .+.++ +.+...|...+ +++||.
T Consensus 49 ~l~~g~~V---LDiGCG~G~~a~~~a~~~g~~v~gi~ls--~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~ 120 (280)
T d2fk8a1 49 DLKPGMTL---LDIGCGWGTTMRRAVERFDVNVIGLTLS--KNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDR 120 (280)
T ss_dssp CCCTTCEE---EEESCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSE
T ss_pred CCCCCCEE---EEecCCchHHHHHHHHhCceeEEEecch--HHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhh
Confidence 35666777 99999999999999874 8999995544 4444433 33343 34444554443 578999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-----------------------------cch--HHHH
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----------------------------AQL--EDVY 350 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----------------------------~~l--~~~l 350 (392)
|++..+++|+ .....+.++++++|+|||||++++....... ..+ .+++
T Consensus 121 i~si~~~eh~-~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l 199 (280)
T d2fk8a1 121 IVSIEAFEHF-GHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMM 199 (280)
T ss_dssp EEEESCGGGT-CGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred hhHhhHHHHh-hhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhh
Confidence 9999999995 4556678999999999999999987542211 001 3557
Q ss_pred HHHHHHcCCeEEEEEE
Q 047630 351 VPLIESVGFNKLKWVV 366 (392)
Q Consensus 351 ~~ll~~aGf~~i~w~~ 366 (392)
.++++++||++..+..
T Consensus 200 ~~~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 200 VEHGEKAGFTVPEPLS 215 (280)
T ss_dssp HHHHHHTTCBCCCCEE
T ss_pred hhhHHhhccccceeee
Confidence 7889999999887764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.48 E-value=3.5e-14 Score=124.24 Aligned_cols=136 Identities=7% Similarity=-0.086 Sum_probs=94.2
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC------------------Ccc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG------------------VVP 283 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg------------------~i~ 283 (392)
..++..+ .+.++.+| ||+|||+|..+..|+++|.+|+|+| ++..+.+.+.++. .+.
T Consensus 10 ~~~~~~l-~~~~~~rv---Ld~GCG~G~~a~~la~~G~~V~gvD--~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T d1pjza_ 10 QQYWSSL-NVVPGARV---LVPLCGKSQDMSWLSGQGYHVVGAE--LSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 83 (201)
T ss_dssp HHHHHHH-CCCTTCEE---EETTTCCSHHHHHHHHHCCEEEEEE--ECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHHHc-CCCCCCEE---EEecCcCCHHHHHHHHcCCceEeec--ccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence 3344443 46666777 9999999999999999999999955 5445555444321 145
Q ss_pred EEEeccCcCCC-CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc--------hHHHHHHHH
Q 047630 284 LYISISQRLPF-FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ--------LEDVYVPLI 354 (392)
Q Consensus 284 ~~~~d~~~Lpf-~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~--------l~~~l~~ll 354 (392)
++.++...++. ....||+|++..++++ ..+.....++++++++|||||.+++..+...... ..+++++++
T Consensus 84 ~~~~d~~~l~~~~~~~~D~i~~~~~l~~-l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~ 162 (201)
T d1pjza_ 84 IWCGDFFALTARDIGHCAAFYDRAAMIA-LPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVM 162 (201)
T ss_dssp EEEECCSSSTHHHHHSEEEEEEESCGGG-SCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTS
T ss_pred eecccccccccccccceeEEEEEeeeEe-cchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHh
Confidence 67777777754 4578999999999987 4556677899999999999999887765332211 144455554
Q ss_pred HHcCCeEEEEE
Q 047630 355 ESVGFNKLKWV 365 (392)
Q Consensus 355 ~~aGf~~i~w~ 365 (392)
. .+|.+....
T Consensus 163 ~-~~~~i~~~~ 172 (201)
T d1pjza_ 163 S-GNWEVTKVG 172 (201)
T ss_dssp C-SSEEEEEEE
T ss_pred C-CCcEEEEEE
Confidence 3 456654433
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=8e-13 Score=124.58 Aligned_cols=110 Identities=15% Similarity=0.263 Sum_probs=74.6
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cCC----c--cEEEeccC--
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RGV----V--PLYISISQ-- 290 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg~----i--~~~~~d~~-- 290 (392)
.++.++++..++.+| ||+|||+|.++..|+++|..|+| +|++..+.+.+.+ ++. . .+...+..
T Consensus 46 ~~l~~~l~~~~~~~v---LD~GcG~G~~~~~la~~g~~v~g--vD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRV---LDVACGTGVDSIMLVEEGFSVTS--VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL 120 (292)
T ss_dssp HHHHHHHHHTTCCEE---EESSCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred HHHHHHhhhcCCCEE---EEecCCCcHHHHHHHHcCCeeee--ccCchHHHHHHHHHHHhcccccccceeeeeecccccc
Confidence 344555555544455 99999999999999999999998 5554454443322 221 1 22233322
Q ss_pred --cCCCCCCcccEEEEc-ccccccCC----chhHHHHHHHHHHcccCCcEEEEEe
Q 047630 291 --RLPFFDNTLDIVHSM-HVLSNWIP----TTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 291 --~Lpf~d~sFDlV~s~-~~l~~~~~----~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+| ..++||+|+|. .+++|+.+ .+++..+|++++|+|||||+|+++.
T Consensus 121 ~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 121 DKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp HHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 233 35689999987 47777643 2467789999999999999998864
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=8.3e-13 Score=123.08 Aligned_cols=129 Identities=14% Similarity=0.023 Sum_probs=87.6
Q ss_pred EEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhc----C-Cc------------------------------
Q 047630 239 IGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASR----G-VV------------------------------ 282 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~r----g-~i------------------------------ 282 (392)
++||||||+|.+....+. ....|++ +|++..+.+.+.+. . .+
T Consensus 57 ~vLDiGcG~g~~~~~~~~~~~~~v~~--~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T d2g72a1 57 TLIDIGSGPTVYQLLSACSHFEDITM--TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 134 (263)
T ss_dssp EEEEETCTTCCGGGTTGGGGCSEEEE--ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred EEEEeccCCCHHHHHHhcccCCeEEE--EeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhh
Confidence 459999999988765554 5567888 55634444433211 0 00
Q ss_pred -cEEEecc------CcCCCCCCcccEEEEcccccccCC-chhHHHHHHHHHHcccCCcEEEEEeeccccc----------
Q 047630 283 -PLYISIS------QRLPFFDNTLDIVHSMHVLSNWIP-TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA---------- 344 (392)
Q Consensus 283 -~~~~~d~------~~Lpf~d~sFDlV~s~~~l~~~~~-~~~l~~~L~el~RvLKPGG~lii~~~~~~~~---------- 344 (392)
.....|+ ...++.+++||+|++.++++++.+ .++...++++++++|||||+|++........
T Consensus 135 ~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~ 214 (263)
T d2g72a1 135 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 214 (263)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEEC
T ss_pred hccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccccc
Confidence 1122232 123455678999999999998753 3567889999999999999998876532211
Q ss_pred --chHHHHHHHHHHcCCeEEEEEEeec
Q 047630 345 --QLEDVYVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 345 --~l~~~l~~ll~~aGf~~i~w~~~~k 369 (392)
-..++++++++++||++++.+....
T Consensus 215 ~~~t~e~v~~~l~~aGf~v~~~~~~~~ 241 (263)
T d2g72a1 215 VPVSEEEVREALVRSGYKVRDLRTYIM 241 (263)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHCCCeEEEEEEeec
Confidence 1267799999999999988776553
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.39 E-value=7.6e-13 Score=122.53 Aligned_cols=137 Identities=16% Similarity=0.144 Sum_probs=98.6
Q ss_pred HHHHHHhhCC-CCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEE
Q 047630 224 SIDEVLATKK-PGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 224 lI~~ll~l~~-~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
..+.+++..+ -..+++|||||||+|.++..++++.+++.++.+|+ +...+.+.....+.++.+|..+ +.+ ..|++
T Consensus 68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~ 143 (244)
T d1fp1d2 68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVP--QGDAM 143 (244)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCC--CEEEE
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCccc-ccc--cceEE
Confidence 3444554443 35667789999999999999999776666656776 3332222222347888888653 333 35999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------------------------chHHHHHHHHHHc
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------------------------QLEDVYVPLIESV 357 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------------------------~l~~~l~~ll~~a 357 (392)
++.+++|+| +++....+|++++++|+|||.++|.++.-+.+ ...++|.++++++
T Consensus 144 ~l~~vLh~~-~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~A 222 (244)
T d1fp1d2 144 ILKAVCHNW-SDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLS 222 (244)
T ss_dssp EEESSGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred EEehhhhhC-CHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHc
Confidence 999999997 44555689999999999999998888642111 1167899999999
Q ss_pred CCeEEEEE
Q 047630 358 GFNKLKWV 365 (392)
Q Consensus 358 Gf~~i~w~ 365 (392)
||+.++..
T Consensus 223 GF~~v~v~ 230 (244)
T d1fp1d2 223 GFSKFQVA 230 (244)
T ss_dssp TCSEEEEE
T ss_pred CCCceEEE
Confidence 99998864
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.39 E-value=8.9e-13 Score=121.03 Aligned_cols=129 Identities=11% Similarity=0.050 Sum_probs=90.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh----cCCccEEEeccCcC-CCCCCcccEEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS----RGVVPLYISISQRL-PFFDNTLDIVH 303 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~----rg~i~~~~~d~~~L-pf~d~sFDlV~ 303 (392)
+.++.+| ||+|||+|..+..+++.+ -.|+| +|+++.+.+.+.+ +..+..+.++.... ++.+..+|+++
T Consensus 72 ikpG~~V---LDlGcGsG~~~~~la~~~~~g~V~a--VDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 72 IKRDSKI---LYLGASAGTTPSHVADIADKGIVYA--IEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CCTTCEE---EEESCCSSHHHHHHHHHTTTSEEEE--EESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCCEE---EEeCEEcCHHHHHHHHhCCCCEEEE--EeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEE
Confidence 4566667 999999999999999854 46777 5554444443332 34455566665543 45677888877
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc------cchHHHHHHHHHHcCCeEEEEEEe
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------AQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+...+++. ++.+.++.++.|+|||||++++....... ....++..+.++++||+.++-...
T Consensus 147 i~~~~~~~---~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL 213 (230)
T d1g8sa_ 147 IYEDVAQP---NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDI 213 (230)
T ss_dssp EEECCCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred eeccccch---HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 77666665 55567999999999999999888654322 222455778899999999876643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=7.3e-13 Score=117.78 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC----CccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG----VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg----~i~~~~~d~~~L 292 (392)
.+.+++. +...++++| ||+|||+|.++..+++.+..++++|+|. ...+. +...+ .+.+..+|...
T Consensus 41 t~lLi~~-l~~~~~~~V---LDiGcG~G~~~~~la~~~~~v~~iD~s~--~~i~~a~~n~~~~~l~~~~i~~~~~d~~~- 113 (194)
T d1dusa_ 41 TKILVEN-VVVDKDDDI---LDLGCGYGVIGIALADEVKSTTMADINR--RAIKLAKENIKLNNLDNYDIRVVHSDLYE- 113 (194)
T ss_dssp HHHHHHH-CCCCTTCEE---EEETCTTSHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHTTCTTSCEEEEECSTTT-
T ss_pred HHHHHHh-CCcCCCCeE---EEEeecCChhHHHHHhhccccceeeecc--ccchhHHHHHHHhCCccceEEEEEcchhh-
Confidence 3444443 334445555 9999999999999999999999966553 33332 22223 25677788766
Q ss_pred CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 293 PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
++++++||+|++..++++. .+..+.+++++.|+|||||.+++...
T Consensus 114 ~~~~~~fD~Ii~~~p~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 114 NVKDRKYNKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp TCTTSCEEEEEECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccCCceEEEEcccEEec--chhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 5678899999999887653 23356799999999999999987653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.36 E-value=9.7e-13 Score=116.30 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=90.7
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFF 295 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~ 295 (392)
.++-..+.+.++..| ||+|||+|.++..+++.+.+|+++| ++..+.+. +.+.| .++++++++..+++.
T Consensus 23 ~~il~~l~~~~g~~V---LDiGcGsG~~s~~lA~~~~~V~avD--~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~ 97 (186)
T d1l3ia_ 23 CLIMCLAEPGKNDVA---VDVGCGTGGVTLELAGRVRRVYAID--RNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK 97 (186)
T ss_dssp HHHHHHHCCCTTCEE---EEESCTTSHHHHHHHTTSSEEEEEE--SCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT
T ss_pred HHHHHhcCCCCCCEE---EEEECCeEcccccccccceEEEEec--CCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc
Confidence 344444556666666 9999999999999999888999855 43444443 33334 367889998888888
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN 360 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~ 360 (392)
...||+|++....+++ +.+++++.+.|||||++++..... +. .....+.++..||.
T Consensus 98 ~~~~D~v~~~~~~~~~------~~~~~~~~~~LkpgG~lvi~~~~~--e~-~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 98 IPDIDIAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAILL--ET-KFEAMECLRDLGFD 153 (186)
T ss_dssp SCCEEEEEESCCTTCH------HHHHHHHHHTEEEEEEEEEEECBH--HH-HHHHHHHHHHTTCC
T ss_pred cCCcCEEEEeCccccc------hHHHHHHHHHhCcCCEEEEEeecc--cc-HHHHHHHHHHcCCC
Confidence 8899999998766543 468999999999999998875432 22 23366678888873
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=5.5e-12 Score=117.66 Aligned_cols=126 Identities=11% Similarity=0.048 Sum_probs=84.9
Q ss_pred EEEEEcCCcchHHHHHHHc------CCEEEEEecCCCchhHHHHHhc----CC---cc--EEEeccC------cCCCCCC
Q 047630 239 IGLDIGGGVATFAVRMMER------NITIVTTSMNLNGPFNNFIASR----GV---VP--LYISISQ------RLPFFDN 297 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~------g~~vvg~~iD~~a~~~~~aa~r----g~---i~--~~~~d~~------~Lpf~d~ 297 (392)
.|||||||+|.++..+++. +..+..+++|++..+.+.+.++ .. +. +...+.+ ..+++++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 4599999999988777552 4444445578855555544332 11 22 2222222 2356789
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc---------------c-----chHHHHHHHHHHc
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------------A-----QLEDVYVPLIESV 357 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------------~-----~l~~~l~~ll~~a 357 (392)
+||+|++.++++|+. ++..+|++++++|||||.+++....... + -..+.+.+++++.
T Consensus 123 ~fD~I~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 199 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 199 (280)
T ss_dssp CEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHH
T ss_pred ceeEEEEccceecCC---CHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHC
Confidence 999999999999973 4457999999999999999887642111 0 0155688999999
Q ss_pred CCeEEEEEEe
Q 047630 358 GFNKLKWVVG 367 (392)
Q Consensus 358 Gf~~i~w~~~ 367 (392)
||..++....
T Consensus 200 G~~~~~~~~~ 209 (280)
T d1jqea_ 200 GLKYECYDLL 209 (280)
T ss_dssp TCCEEEEEEC
T ss_pred CCceEEEecc
Confidence 9987665533
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.29 E-value=5.3e-12 Score=113.73 Aligned_cols=119 Identities=15% Similarity=0.107 Sum_probs=84.4
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcCC--CCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRLP--FFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~Lp--f~d~sFDlV~s~~~l 308 (392)
+|||||||+|.++..+|+.. ..++| +|++...... +.+.+ .+.++.+|+..+. ++++++|.|+..+..
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iG--iD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIG--IELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEE--eecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 46999999999999999965 45666 6665555543 33344 3778889988775 789999999988876
Q ss_pred cccCCchh-----HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 309 SNWIPTTL-----LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 309 ~~~~~~~~-----l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
.+...+.. ...++.+++|+|||||.|++.. ......+...+.+.+.++...
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T---D~~~y~~~~~~~~~~~~~~~~ 165 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT---DNRGLFEYSLKSFSEYGLLLT 165 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE---SCHHHHHHHHHHHHHHTCEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE---CChHHHHHHHHHHHHCCCccc
Confidence 44322110 1469999999999999998763 334444556667777776543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.2e-12 Score=119.50 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=81.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHhcC-----CccEEEeccC--cCCCCCCcccEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIASRG-----VVPLYISISQ--RLPFFDNTLDIVH 303 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~rg-----~i~~~~~d~~--~Lpf~d~sFDlV~ 303 (392)
.++++| ||||||+|..+..+++.+ ..+++ +|++..+.+.+.++. .+.++..++. ..++++++||.|+
T Consensus 52 ~~g~~V---LdIGcG~G~~a~~~a~~~~~~v~~--id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 126 (229)
T d1zx0a1 52 SKGGRV---LEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 126 (229)
T ss_dssp TTCEEE---EEECCTTSHHHHHHHTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeE---EEeeccchHHHHHHHHcCCCeEEE--eCCCHHHHHHHHHHhhhccccccccccccccccccccccccccee
Confidence 344555 999999999999999865 46777 555445555443331 1344555543 3366788999987
Q ss_pred E-----cccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-------c----chHHHHHHHHHHcCCeEE
Q 047630 304 S-----MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-------A----QLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 304 s-----~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-------~----~l~~~l~~ll~~aGf~~i 362 (392)
. ...++|+ .+.+.++++++|+|||||+|++.+..... . ...+.+...+.++||+..
T Consensus 127 fD~~~~~~~~~~~---~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~ 198 (229)
T d1zx0a1 127 YDTYPLSEETWHT---HQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRE 198 (229)
T ss_dssp ECCCCCBGGGTTT---HHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGG
T ss_pred ecccccccccccc---cCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeE
Confidence 4 4555554 55667999999999999999876532111 1 124456677888999653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.25 E-value=4.3e-11 Score=107.96 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=84.9
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcCCccEEEeccCcCCCCCCcccEEE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRGVVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
.+.++.+| ||+|||+|..+.++++. ...|+| +|+++.+.+ .+.+++.+.++.++....+.....+|.|.
T Consensus 53 ~lkpg~~V---LDlGcG~G~~~~~la~~v~~g~V~g--vDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 53 KLRGDERV---LYLGAASGTTVSHLADIVDEGIIYA--VEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCSSCEE---EEETCTTSHHHHHHHHHTTTSEEEE--ECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCCCEE---EEeCCcCCHHHHHHHHhccCCeEEE--EeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE
Confidence 35667777 99999999999999983 247887 666455544 23344567888888887766666555554
Q ss_pred Ec-ccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc---ccchHHHHHHHH--HHcCCeEEEEEEee
Q 047630 304 SM-HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV---GAQLEDVYVPLI--ESVGFNKLKWVVGR 368 (392)
Q Consensus 304 s~-~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~---~~~l~~~l~~ll--~~aGf~~i~w~~~~ 368 (392)
.. ..+.+. .+...++.+++|+|||||++++...... ..+....+.... .+.||+.++-....
T Consensus 128 ~v~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~i~L~ 195 (209)
T d1nt2a_ 128 LIYQDIAQK---NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLM 195 (209)
T ss_dssp EEEECCCST---THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEECT
T ss_pred EEEecccCh---hhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEEccC
Confidence 33 233343 4556799999999999999988764321 111112222222 23699998765443
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=1.6e-11 Score=117.76 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=79.0
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-HHHhcC---CccEEEeccCcCCCCCCcccEEEE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-FIASRG---VVPLYISISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s 304 (392)
...++..| ||||||+|.++..+++.|+ .|++++.+..+.... .+.+++ .+.++.++...+++++++||+|++
T Consensus 35 ~~~~~~~V---LDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~s 111 (328)
T d1g6q1_ 35 DLFKDKIV---LDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp HHHTTCEE---EEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred ccCCcCEE---EEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEE
Confidence 34455555 9999999999999999885 788866543111111 233334 367889999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEE
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~li 335 (392)
....+.......++.++..+.|+|||||+++
T Consensus 112 e~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 8887776666777889999999999999994
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.21 E-value=2.6e-11 Score=111.98 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=90.8
Q ss_pred cccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 236 TIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
..++|||||||+|.++..++++.+.+.++..|+ +...+.+.....+.++.+|... +.+ .+|+++..+++|+|.+ +
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d-~ 154 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTD-K 154 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCH-H
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcccCceEEEecCccc-CCC--CCcEEEEEeecccCCh-H
Confidence 345669999999999999999765444444666 3333333333458888888765 333 5799999999999844 4
Q ss_pred hHHHHHHHHHHcccCC---cEEEEEeecccc------------------------cchHHHHHHHHHHcCCeEEEEE
Q 047630 316 LLHFLMFDIYRVLRPG---GLFWLDHFFCVG------------------------AQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 316 ~l~~~L~el~RvLKPG---G~lii~~~~~~~------------------------~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
...++|++++++|+|| |+++|.+..-.. +...++|+++++++||+.++..
T Consensus 155 ~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~ 231 (244)
T d1fp2a2 155 DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKIS 231 (244)
T ss_dssp HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEE
Confidence 4568999999999999 667666542111 1126789999999999998865
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.21 E-value=2.6e-11 Score=111.69 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=94.9
Q ss_pred HHHHHhhCC-CCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEE
Q 047630 225 IDEVLATKK-PGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 225 I~~ll~l~~-~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
...++...+ ....++|||||||+|.++..++++.+.+.++..|+ +...+.+.....+.+..+|... +.+. .|+++
T Consensus 69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~r~~~~~~d~~~-~~P~--ad~~~ 144 (243)
T d1kyza2 69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDL-PHVIEDAPSYPGVEHVGGDMFV-SIPK--ADAVF 144 (243)
T ss_dssp HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-TTTTTTCCCCTTEEEEECCTTT-CCCC--CSCEE
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEccc-HHhhhhcccCCceEEecccccc-cCCC--cceEE
Confidence 344444332 24467789999999999999999765544445666 3333333333457788888643 3333 47788
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc--------------------------ccchHHHHHHHHHHc
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV--------------------------GAQLEDVYVPLIESV 357 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~--------------------------~~~l~~~l~~ll~~a 357 (392)
..+++|.| +++....+|++++++|+|||.++|.+.... .+...++|+++++++
T Consensus 145 l~~vlh~~-~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~A 223 (243)
T d1kyza2 145 MKWICHDW-SDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGA 223 (243)
T ss_dssp CSSSSTTS-CHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHH
T ss_pred EEEEeecC-CHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHc
Confidence 88999987 445567899999999999999988764211 111267799999999
Q ss_pred CCeEEEEE
Q 047630 358 GFNKLKWV 365 (392)
Q Consensus 358 Gf~~i~w~ 365 (392)
||+.++..
T Consensus 224 Gf~~vkv~ 231 (243)
T d1kyza2 224 GFQGFKVH 231 (243)
T ss_dssp CCSCEEEE
T ss_pred CCCcEEEE
Confidence 99999765
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.20 E-value=4.1e-11 Score=111.06 Aligned_cols=120 Identities=15% Similarity=0.055 Sum_probs=82.8
Q ss_pred HHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCC
Q 047630 227 EVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFD 296 (392)
Q Consensus 227 ~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d 296 (392)
..+++.++.+| ||+|||+|.++..|++. +-.|++ +|.+..+.+.+.++ + .+.+..+|..+. +++
T Consensus 79 ~~l~i~pG~rV---LEiG~GsG~lt~~la~~v~~~g~V~~--vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~ 152 (250)
T d1yb2a1 79 MRCGLRPGMDI---LEVGVGSGNMSSYILYALNGKGTLTV--VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISD 152 (250)
T ss_dssp --CCCCTTCEE---EEECCTTSHHHHHHHHHHTTSSEEEE--ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCS
T ss_pred HHcCCCCcCEE---EEeeeeCcHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccc
Confidence 34557787777 99999999999999973 346777 55655555544432 2 367888887765 567
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
+.||+|+.. .... . .++.++.++|||||+|++... ..++.. ...+.+++.||..++
T Consensus 153 ~~fD~V~ld-~p~p----~---~~l~~~~~~LKpGG~lv~~~P--~i~Qv~-~~~~~l~~~gf~~i~ 208 (250)
T d1yb2a1 153 QMYDAVIAD-IPDP----W---NHVQKIASMMKPGSVATFYLP--NFDQSE-KTVLSLSASGMHHLE 208 (250)
T ss_dssp CCEEEEEEC-CSCG----G---GSHHHHHHTEEEEEEEEEEES--SHHHHH-HHHHHSGGGTEEEEE
T ss_pred ceeeeeeec-CCch----H---HHHHHHHHhcCCCceEEEEeC--CcChHH-HHHHHHHHCCCceeE
Confidence 899999863 2222 2 479999999999999977432 223333 355667889997764
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=2.5e-11 Score=115.88 Aligned_cols=101 Identities=15% Similarity=0.234 Sum_probs=78.0
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-HHHhcC---CccEEEeccCcCCCCCCcccEEEEcc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-FIASRG---VVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
.++..| ||||||+|.++..+++.|+ .|+++|.+....... .+.+++ .+.++.++..+++++.++||+|++..
T Consensus 32 ~~~~~V---LDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~ 108 (316)
T d1oria_ 32 FKDKVV---LDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 108 (316)
T ss_dssp HTTCEE---EEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred CCcCEE---EEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee
Confidence 344444 9999999999999999885 688866543221111 233333 37888999999999999999999987
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEE
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~li 335 (392)
..+....+..++.++..+.|+|||||.++
T Consensus 109 ~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 109 MGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 77776666678889999999999999995
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.18 E-value=7.2e-11 Score=106.11 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=81.4
Q ss_pred cEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHH----HhcC--CccEEEeccCcCC--CCCCcccEEEEccc
Q 047630 238 RIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFI----ASRG--VVPLYISISQRLP--FFDNTLDIVHSMHV 307 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~a----a~rg--~i~~~~~d~~~Lp--f~d~sFDlV~s~~~ 307 (392)
.+|||||||+|.++..+|+.. ..++| +|++......+ .+.+ .+.++.+|+..+. ++++++|.|++.+.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iG--id~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIG--IDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEE--EeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 356999999999999999964 55666 55644444433 2333 3788899988775 68899999998775
Q ss_pred ccccCCchh------HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeE
Q 047630 308 LSNWIPTTL------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 308 l~~~~~~~~------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~ 361 (392)
- .|..... ...+|+++.|+|||||.|++.+ ...+..+...+.+.+.++..
T Consensus 111 d-Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T---D~~~Y~~~~le~~~~~~~~~ 166 (204)
T d1yzha1 111 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT---DNRGLFEYSLVSFSQYGMKL 166 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE---SCHHHHHHHHHHHHHHTCEE
T ss_pred c-cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE---CCccHHHHHHHHHHHCCccc
Confidence 4 3333221 1468999999999999997753 23333444556667777654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.18 E-value=2.8e-11 Score=113.00 Aligned_cols=125 Identities=12% Similarity=0.142 Sum_probs=88.4
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc-CC--EEEEEecCCCchhHHHHHhc---------CCccEEEeccCc
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER-NI--TIVTTSMNLNGPFNNFIASR---------GVVPLYISISQR 291 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~--~vvg~~iD~~a~~~~~aa~r---------g~i~~~~~d~~~ 291 (392)
+|-..+++.++.+| ||+|||+|.++..|++. +. .+++ +|++.+..+.+.++ ..+.+.++|...
T Consensus 87 ~Ii~~l~i~PG~~V---LE~G~GsG~lt~~La~~vgp~G~V~~--~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~ 161 (264)
T d1i9ga_ 87 QIVHEGDIFPGARV---LEAGAGSGALTLSLLRAVGPAGQVIS--YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 161 (264)
T ss_dssp HHHHHTTCCTTCEE---EEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred HHHHHhCCCCCCEE---EecCcCCcHHHHHHHHhhCCCcEEEE--ecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence 45556678888888 99999999999999984 43 6766 66655665544331 136788889988
Q ss_pred CCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 292 LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 292 Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
.++++++||.|+. +..++. .++.++.|+|||||.+++.. ..-++..+.+..+-++.||..++
T Consensus 162 ~~~~~~~fDaV~l-----dlp~P~---~~l~~~~~~LkpGG~lv~~~--P~i~Qv~~~~~~l~~~~~f~~i~ 223 (264)
T d1i9ga_ 162 SELPDGSVDRAVL-----DMLAPW---EVLDAVSRLLVAGGVLMVYV--ATVTQLSRIVEALRAKQCWTEPR 223 (264)
T ss_dssp CCCCTTCEEEEEE-----ESSCGG---GGHHHHHHHEEEEEEEEEEE--SSHHHHHHHHHHHHHHSSBCCCE
T ss_pred ccccCCCcceEEE-----ecCCHH---HHHHHHHhccCCCCEEEEEe--CccChHHHHHHHHHHcCCeecce
Confidence 8999999999985 223333 48999999999999987653 33344555455544566786543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.3e-11 Score=113.71 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=78.2
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH---HHHhcC---CccEEEeccCcCCCCCCcccEEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN---FIASRG---VVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~---~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
..++..| ||||||+|.++..+++.|+ .|+++|.+. .... .+.+++ .+.++.++.+++++++++||+|+
T Consensus 33 ~~~~~~V---LDiGcG~G~lsl~aa~~Ga~~V~aid~s~--~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Iv 107 (311)
T d2fyta1 33 IFKDKVV---LDVGCGTGILSMFAAKAGAKKVLGVDQSE--ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVII 107 (311)
T ss_dssp GTTTCEE---EEETCTTSHHHHHHHHTTCSEEEEEESST--HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred cCCcCEE---EEECCCCCHHHHHHHHcCCCEEEEEeCHH--HHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEE
Confidence 4444444 9999999999999999886 788866543 2221 233333 37888999999999999999999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEE
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii 336 (392)
+....++......++.++....|.|||||+++.
T Consensus 108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 987777766666777888889999999999953
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=3.9e-11 Score=108.43 Aligned_cols=98 Identities=16% Similarity=0.093 Sum_probs=71.9
Q ss_pred HHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCC
Q 047630 227 EVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDN 297 (392)
Q Consensus 227 ~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~ 297 (392)
+.+++.++.+| ||||||+|++++.+++. ...|+++| ++....+.+.+ .+ .+.+.++|.....+.++
T Consensus 69 ~~l~l~~g~~V---LdiG~GtG~~s~~la~~~~~~g~V~~id--~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 69 EWVGLDKGMRV---LEIGGGTGYNAAVMSRVVGEKGLVVSVE--YSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHTTCCTTCEE---EEECCTTSHHHHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HhhhccccceE---EEecCccchhHHHHHHHhCCCCcEEEee--cchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 34567787777 99999999999999873 34677744 43444443322 22 35677888888777788
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+||+|++..++++. ..++.+.|||||++++..
T Consensus 144 ~fD~I~~~~~~~~~---------p~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 144 PYDVIFVTVGVDEV---------PETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CEEEEEECSBBSCC---------CHHHHHHEEEEEEEEEEB
T ss_pred chhhhhhhccHHHh---------HHHHHHhcCCCcEEEEEE
Confidence 99999999998774 245678899999998753
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=5.2e-10 Score=102.00 Aligned_cols=140 Identities=12% Similarity=0.006 Sum_probs=87.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHHHH----HhcCCccEEEeccC---cCCCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNNFI----ASRGVVPLYISISQ---RLPFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~~a----a~rg~i~~~~~d~~---~Lpf~d~sFD 300 (392)
+.++.+| ||+|||+|.++.++++. | -.|++ +|++..+...+ .+++.+..+..+.. .++.....+|
T Consensus 71 i~pG~~V---LDlGaGsG~~t~~la~~VG~~G~V~a--VD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD 145 (227)
T d1g8aa_ 71 IKPGKSV---LYLGIASGTTASHVSDIVGWEGKIFG--IEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCTTCEE---EEETTTSTTHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred cCCCCEE---EEeccCCCHHHHHHHHHhCCCCEEEE--EeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceE
Confidence 5566777 99999999999999983 3 46777 55544444422 22344556666643 3344557789
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc------cchHHHHHHHHHHcCCeEEEEEEeeccCCCC
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------AQLEDVYVPLIESVGFNKLKWVVGRKLDRGP 374 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~ 374 (392)
+|++... +. +....++.++.+.|||||++++....... +...++..+ +.+.||+.++-......+
T Consensus 146 ~i~~d~~--~~---~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~-l~~~gf~iie~i~L~p~~--- 216 (227)
T d1g8aa_ 146 VIFEDVA--QP---TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVER-ELSEYFEVIERLNLEPYE--- 216 (227)
T ss_dssp EEEECCC--ST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHH-HHHTTSEEEEEEECTTTS---
T ss_pred EEEEEcc--cc---chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHH-HHHcCCEEEEEEcCCCCC---
Confidence 8876432 22 44567999999999999999988653321 122332333 446699998755332222
Q ss_pred cccceeeEEEEEc
Q 047630 375 ELREMYLSALLEK 387 (392)
Q Consensus 375 ~~~e~ylsai~~K 387 (392)
. ..+ ..+.+|
T Consensus 217 -~-~H~-~vv~rK 226 (227)
T d1g8aa_ 217 -K-DHA-LFVVRK 226 (227)
T ss_dssp -S-SEE-EEEEEC
T ss_pred -C-ceE-EEEEEe
Confidence 1 223 367777
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.3e-10 Score=104.14 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=70.1
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hc-------CCccEEEeccCcCCCC
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SR-------GVVPLYISISQRLPFF 295 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~r-------g~i~~~~~d~~~Lpf~ 295 (392)
.+.++.+| ||||||+|+.++.|++. ...|+++ |.+....+.+. +. +.+.+..+|....+..
T Consensus 73 ~l~~g~~V---LdiG~GsGy~ta~la~l~~~~g~V~~i--e~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~ 147 (224)
T d1i1na_ 73 QLHEGAKA---LDVGSGSGILTACFARMVGCTGKVIGI--DHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE 147 (224)
T ss_dssp TSCTTCEE---EEETCTTSHHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG
T ss_pred ccCCCCeE---EEecCCCCHHHHHHHHHhCCCceEEEE--cCCHHHHHHHHHhccccCcccccccceEEEEeecccccch
Confidence 35566677 99999999999988873 4578884 45344444222 21 2357788898888878
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
++.||.|++..++++. ..++.+.|||||++++..
T Consensus 148 ~~~fD~I~~~~~~~~i---------p~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 148 EAPYDAIHVGAAAPVV---------PQALIDQLKPGGRLILPV 181 (224)
T ss_dssp GCCEEEEEECSBBSSC---------CHHHHHTEEEEEEEEEEE
T ss_pred hhhhhhhhhhcchhhc---------CHHHHhhcCCCcEEEEEE
Confidence 8899999999988764 245779999999998853
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=1e-09 Score=102.34 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=84.5
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----cCC---ccEEEeccCcCC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----RGV---VPLYISISQRLP 293 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----rg~---i~~~~~d~~~Lp 293 (392)
+|-..+++.++.+| ||+|||+|.++..|++. +..+++ +|++..+.+.+.+ .+. +.+...|... .
T Consensus 94 ~Ii~~l~i~pG~~V---LDiG~GsG~lt~~lA~~~~~~G~V~~--vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~ 167 (266)
T d1o54a_ 94 FIAMMLDVKEGDRI---IDTGVGSGAMCAVLARAVGSSGKVFA--YEKREEFAKLAESNLTKWGLIERVTIKVRDISE-G 167 (266)
T ss_dssp HHHHHTTCCTTCEE---EEECCTTSHHHHHHHHHTTTTCEEEE--ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-C
T ss_pred HHHHhhCCCCCCEE---EECCCCCCHHHHHHHHHhCCCcEEEE--EeCCHHHHHHHHHHHHHhccccCcEEEeccccc-c
Confidence 55566778888888 99999999999999873 346777 6665555553332 233 4445555433 4
Q ss_pred CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+....||.|+. +..++. .++.++.++|||||.+++... ..+.+ +...+.+++.||..++..
T Consensus 168 ~~~~~~D~V~~-----d~p~p~---~~l~~~~~~LKpGG~lv~~~P--~~~Qv-~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 168 FDEKDVDALFL-----DVPDPW---NYIDKCWEALKGGGRFATVCP--TTNQV-QETLKKLQELPFIRIEVW 228 (266)
T ss_dssp CSCCSEEEEEE-----CCSCGG---GTHHHHHHHEEEEEEEEEEES--SHHHH-HHHHHHHHHSSEEEEEEE
T ss_pred ccccceeeeEe-----cCCCHH---HHHHHHHhhcCCCCEEEEEeC--cccHH-HHHHHHHHHCCceeEEEE
Confidence 56778998864 333333 489999999999999987542 12233 336667888999876543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=7.4e-10 Score=103.74 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=92.5
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~L 292 (392)
.+.+++.++........ .|||+|||+|..+..++.. +..+++ +|++..... ++.+.+ .+.++.+|...
T Consensus 94 TE~lv~~~l~~~~~~~~-~vlDlGtGSG~I~i~la~~~p~~~v~a--vDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~- 169 (274)
T d2b3ta1 94 TECLVEQALARLPEQPC-RILDLGTGTGAIALALASERPDCEIIA--VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS- 169 (274)
T ss_dssp HHHHHHHHHHHSCSSCC-EEEEETCTTSHHHHHHHHHCTTSEEEE--ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-
T ss_pred hhhhhhhHhhhhccccc-ceeeeehhhhHHHHHHHhhCCcceeee--ccchhHHHhHHHHHHHHhCcccceeeeccccc-
Confidence 77788877765543333 3599999999999999884 557777 555333333 222233 26788888655
Q ss_pred CCCCCcccEEEEcccccccC------------Cc----------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHH
Q 047630 293 PFFDNTLDIVHSMHVLSNWI------------PT----------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVY 350 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~------------~~----------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l 350 (392)
++++++||+|+|+-....-. +. .....++.++.+.|+|||.+++..-... .+.+
T Consensus 170 ~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q----~~~v 245 (274)
T d2b3ta1 170 ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ----GEAV 245 (274)
T ss_dssp GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC----HHHH
T ss_pred ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchH----HHHH
Confidence 45678999999985543211 10 2345788999999999999999753332 3447
Q ss_pred HHHHHHcCCeEEEE
Q 047630 351 VPLIESVGFNKLKW 364 (392)
Q Consensus 351 ~~ll~~aGf~~i~w 364 (392)
.+++++.||..++.
T Consensus 246 ~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 246 RQAFILAGYHDVET 259 (274)
T ss_dssp HHHHHHTTCTTCCE
T ss_pred HHHHHHCCCCeEEE
Confidence 78899999986653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.4e-10 Score=111.40 Aligned_cols=101 Identities=9% Similarity=0.106 Sum_probs=71.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHh---------------cCCccEEEeccCcCC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIAS---------------RGVVPLYISISQRLP 293 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~---------------rg~i~~~~~d~~~Lp 293 (392)
+.++..+ ||+|||+|.++..+++. + ..++|+|++ ......+.+ .+.+.++++|+..++
T Consensus 149 l~~~~~v---lD~GcG~G~~~~~~a~~~~~~~~~Gid~s--~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~ 223 (328)
T d1nw3a_ 149 MTDDDLF---VDLGSGVGQVVLQVAAATNCKHHYGVEKA--DIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE 223 (328)
T ss_dssp CCTTCEE---EEETCTTSHHHHHHHHHCCCSEEEEEECS--HHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHH
T ss_pred CCCCCEE---EEcCCCCCHHHHHHHHHhCCCeEEEEeCC--HHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccc
Confidence 5555555 99999999999988873 4 368885543 333322111 124789999999998
Q ss_pred CCCCccc--EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 294 FFDNTLD--IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 294 f~d~sFD--lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+.+..|| +|++ ..+.++ .++...|.++.|+|||||++++...+
T Consensus 224 ~~~~~~~advi~~-~~~~f~---~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 224 WRERIANTSVIFV-NNFAFG---PEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp HHHHHHHCSEEEE-CCTTTC---HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cccccCcceEEEE-cceecc---hHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 8777665 5554 444454 56678999999999999999887643
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.98 E-value=3.2e-10 Score=103.31 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=72.3
Q ss_pred HHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cCCccEEEeccCcCCCCCCcccE
Q 047630 226 DEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RGVVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 226 ~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg~i~~~~~d~~~Lpf~d~sFDl 301 (392)
-+.+.+.++.+| ||||||+|++++.|++.+.+|++++++ ......+.+ ...+.++.+|........+.||.
T Consensus 63 l~~L~l~~g~~V---LdIG~GsGy~ta~La~l~~~V~aiE~~--~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 63 LDELDLHKGQKV---LEIGTGIGYYTALIAEIVDKVVSVEIN--EKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHTTCCTTCEE---EEECCTTSHHHHHHHHHSSEEEEEESC--HHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHhhhcccceE---EEecCCCCHHHHHHHHHhccccccccc--HHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 345567787777 999999999999999998899995544 344433322 23477888886654445678999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
|++..++.++ ...+.+.|||||++++-
T Consensus 138 Iiv~~a~~~i---------p~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPTL---------LCKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEESSBBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred HHhhcchhhh---------hHHHHHhcCCCCEEEEE
Confidence 9999887664 24466889999999874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.8e-09 Score=103.39 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=79.2
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHHHHHhc-----------------CCcc
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNNFIASR-----------------GVVP 283 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~~aa~r-----------------g~i~ 283 (392)
+|-..+++.++.+| ||+|||+|.++..|++. + -.|++ +|++.++.+.+.++ ..+.
T Consensus 89 ~Il~~l~i~pG~rV---LE~GtGsG~lt~~LAr~vg~~G~V~t--~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~ 163 (324)
T d2b25a1 89 MILSMMDINPGDTV---LEAGSGSGGMSLFLSKAVGSQGRVIS--FEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 163 (324)
T ss_dssp HHHHHHTCCTTCEE---EEECCTTSHHHHHHHHHHCTTCEEEE--EESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred HHHHHhCCCCCCEE---EEecccccHHHHHHHHHhCCCcEEEE--ecCCHHHHHHHHHHHHHhhhhhhhhhhhcccccee
Confidence 45556778888888 99999999999999983 3 46777 55544555433321 1367
Q ss_pred EEEeccCcCC--CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHH--cCC
Q 047630 284 LYISISQRLP--FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIES--VGF 359 (392)
Q Consensus 284 ~~~~d~~~Lp--f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~--aGf 359 (392)
+.++|+.... +.+..||.|+. ....+| .++.++.++|||||+|++.. ..-+++.+ ..+.++. .||
T Consensus 164 ~~~~di~~~~~~~~~~~fD~V~L-D~p~P~-------~~l~~~~~~LKpGG~lv~~~--P~i~Qv~~-~~~~l~~~~~~f 232 (324)
T d2b25a1 164 FIHKDISGATEDIKSLTFDAVAL-DMLNPH-------VTLPVFYPHLKHGGVCAVYV--VNITQVIE-LLDGIRTCELAL 232 (324)
T ss_dssp EEESCTTCCC-------EEEEEE-CSSSTT-------TTHHHHGGGEEEEEEEEEEE--SSHHHHHH-HHHHHHHHTCCE
T ss_pred EEecchhhcccccCCCCcceEee-cCcCHH-------HHHHHHHHhccCCCEEEEEe--CCHHHHHH-HHHHHHHcCCCc
Confidence 7888876653 35678999986 223333 37899999999999997743 32334433 4444554 456
Q ss_pred eEEE
Q 047630 360 NKLK 363 (392)
Q Consensus 360 ~~i~ 363 (392)
..++
T Consensus 233 ~~i~ 236 (324)
T d2b25a1 233 SCEK 236 (324)
T ss_dssp EEEE
T ss_pred eeeE
Confidence 6654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=3.7e-08 Score=91.19 Aligned_cols=118 Identities=10% Similarity=0.134 Sum_probs=82.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHH----HHHhcC---CccEEEeccCcCCCCCCcccEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
.++.+| ||+|||+|.++..+++++ ..|+++|+|. ...+ .+..++ .+.++.+|+..++ ..+.||.|+
T Consensus 106 ~~g~~V---lD~~aG~G~~~l~~a~~~~~~V~avd~n~--~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii 179 (260)
T d2frna1 106 KPDELV---VDMFAGIGHLSLPIAVYGKAKVIAIEKDP--YTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRIL 179 (260)
T ss_dssp CTTCEE---EETTCTTTTTHHHHHHHTCCEEEEECCCH--HHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEE
T ss_pred CCccEE---EECcceEcHHHHHHHHhCCcEEEEecCCH--HHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEE
Confidence 455556 999999999999999876 5888855443 3333 333344 3778889988876 367899999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc---cchHHHHHHHHHHcCCeEE
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---AQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---~~l~~~l~~ll~~aGf~~i 362 (392)
+...... ..++.++.++||+||++.+..+.... +...+.+.+.....||+..
T Consensus 180 ~~~p~~~-------~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 180 MGYVVRT-------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp ECCCSSG-------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred ECCCCch-------HHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceE
Confidence 7643211 24778899999999999766554322 2234557778888999763
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.67 E-value=1.8e-08 Score=91.34 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=68.4
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc----C----CEEEEEecCCCchhHHHHHhc-----------CCccEEEeccC
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER----N----ITIVTTSMNLNGPFNNFIASR-----------GVVPLYISISQ 290 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~----g----~~vvg~~iD~~a~~~~~aa~r-----------g~i~~~~~d~~ 290 (392)
.+.++.+| ||||||+|++++.|++. | ..|++++ .+....+.+.++ ..+.+..+|..
T Consensus 77 ~l~~g~~V---LeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE--~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~ 151 (223)
T d1r18a_ 77 HLKPGARI---LDVGSGSGYLTACFYRYIKAKGVDADTRIVGIE--HQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR 151 (223)
T ss_dssp TCCTTCEE---EEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEE--SCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGG
T ss_pred ccCCCCeE---EEecCCCCHHHHHHHHHhhhccCCcccEEEEEe--cCHHHHHHHHHhhhhcchhhcCccEEEEEecccc
Confidence 46677777 99999999999888872 3 3788854 434444333221 24678889987
Q ss_pred cCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 291 RLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 291 ~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
......+.||.|++..++.+. + ..+.+.|||||++++-.
T Consensus 152 ~~~~~~~~fD~Iiv~~a~~~~-p--------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 152 KGYPPNAPYNAIHVGAAAPDT-P--------TELINQLASGGRLIVPV 190 (223)
T ss_dssp GCCGGGCSEEEEEECSCBSSC-C--------HHHHHTEEEEEEEEEEE
T ss_pred cccccccceeeEEEEeechhc-h--------HHHHHhcCCCcEEEEEE
Confidence 766677899999999988653 1 34678999999997753
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.66 E-value=2e-08 Score=90.56 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=72.7
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcCCCC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRLPFF 295 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~Lpf~ 295 (392)
..+-+.+++.++.+| ||||||+|+.++.|++. +..|++++.+ ....+. ..+.+ .+.++.+|.......
T Consensus 68 a~ml~~L~l~~g~~V---LeIGsGsGY~taila~l~g~~V~~ie~~--~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 68 AIMLEIANLKPGMNI---LEVGTGSGWNAALISEIVKTDVYTIERI--PELVEFAKRNLERAGVKNVHVILGDGSKGFPP 142 (215)
T ss_dssp HHHHHHHTCCTTCCE---EEECCTTSHHHHHHHHHHCSCEEEEESC--HHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHhhccCccceE---EEecCCCChhHHHHHHhhCceeEEEecc--HHHHHHHHHHHHHcCCceeEEEECccccCCcc
Confidence 334456678888888 99999999999999984 7678885544 333332 22333 367888987776556
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
.+.||.|++..++.+. + ..+.+.|||||++++-
T Consensus 143 ~~pfD~Iiv~~a~~~i-p--------~~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKI-P--------EPLIEQLKIGGKLIIP 175 (215)
T ss_dssp GCCEEEEEECSBBSSC-C--------HHHHHTEEEEEEEEEE
T ss_pred cCcceeEEeecccccC-C--------HHHHHhcCCCCEEEEE
Confidence 7899999999888653 2 2355679999999775
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=6.3e-08 Score=92.11 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=82.4
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCc----CCCCCCc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQR----LPFFDNT 298 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~----Lpf~d~s 298 (392)
....++.+| ||++||+|.++.+++..+..|+++|++ ....+ .+..+|+ +.++.+|..+ ++...++
T Consensus 141 ~~~~~g~rV---LDl~~gtG~~s~~~a~g~~~V~~vD~s--~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~ 215 (318)
T d1wxxa2 141 MERFRGERA---LDVFSYAGGFALHLALGFREVVAVDSS--AEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGER 215 (318)
T ss_dssp GGGCCEEEE---EEETCTTTHHHHHHHHHEEEEEEEESC--HHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred HHHhCCCee---eccCCCCcHHHHHHHhcCCcEEeecch--HHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcC
Confidence 334444445 999999999999999877788885544 34443 3334453 5678887654 3445679
Q ss_pred ccEEEEcccccccCC------chhHHHHHHHHHHcccCCcEEEEEeecc--cccchHHHHHHHHHHcCC
Q 047630 299 LDIVHSMHVLSNWIP------TTLLHFLMFDIYRVLRPGGLFWLDHFFC--VGAQLEDVYVPLIESVGF 359 (392)
Q Consensus 299 FDlV~s~~~l~~~~~------~~~l~~~L~el~RvLKPGG~lii~~~~~--~~~~l~~~l~~ll~~aGf 359 (392)
||+|++...-..... ......++..+.++|||||.|++..... ..+++.+.+.+.+.++|-
T Consensus 216 fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~ 284 (318)
T d1wxxa2 216 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHR 284 (318)
T ss_dssp EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCC
Confidence 999998743221111 1233468889999999999998875432 233445556666777774
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.54 E-value=1.8e-07 Score=82.42 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=37.5
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+.+.||+|+|.++|+++ +++..+++++.+++.|+|||+|++.+
T Consensus 129 ~~~~fDvI~CRNVLiYf-~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 129 VPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp CCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred CCCCccEEEeehhHHhc-CHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 45789999999999885 56666889999999999999998874
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.54 E-value=6.7e-08 Score=94.82 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=63.1
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHhc-----------C----CccE-EEeccCc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIASR-----------G----VVPL-YISISQR 291 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~r-----------g----~i~~-~~~d~~~ 291 (392)
.+.++..+ ||||||+|..+..++.. + ..++|+| ++..+.+.+.++ + .+.+ ..++...
T Consensus 213 ~Lkpgd~f---LDLGCG~G~~vl~aA~~~g~~~v~GID--iS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~ 287 (406)
T d1u2za_ 213 QLKKGDTF---MDLGSGVGNCVVQAALECGCALSFGCE--IMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD 287 (406)
T ss_dssp TCCTTCEE---EEESCTTSHHHHHHHHHHCCSEEEEEE--CCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred CCCCCCEE---EeCCCCCcHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhh
Confidence 35666666 99999999999999874 4 4788855 533333322211 1 1112 1222222
Q ss_pred CCCCC---CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 292 LPFFD---NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 292 Lpf~d---~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
.++.+ ..+|+|++.. +++. .++...|.++.|+|||||+++..+.+
T Consensus 288 ~~~~d~~~~~adVV~inn-~~f~---~~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 288 NNRVAELIPQCDVILVNN-FLFD---EDLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp CHHHHHHGGGCSEEEECC-TTCC---HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred ccccccccccceEEEEec-ccCc---hHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 22211 2467777654 3343 66778999999999999999887643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.54 E-value=6.5e-08 Score=92.17 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=79.0
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcCC---ccEEEeccCc----CCCCCCcc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRGV---VPLYISISQR----LPFFDNTL 299 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~~----Lpf~d~sF 299 (392)
.++.+| ||+|||+|.++..++..|. .|+++|++ ....+ .+..+|+ +.++++|+.+ ++....+|
T Consensus 144 ~~g~~V---LDl~~g~G~~si~~a~~ga~~V~~vD~s--~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 144 QPGDRV---LDVFTYTGGFAIHAAIAGADEVIGIDKS--PRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CTTCEE---EETTCTTTHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCCee---ecccCcccchhhhhhhcCCcEEEeecCC--HHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCC
Confidence 345556 9999999999999999875 68885544 33333 3334453 5678887544 34456799
Q ss_pred cEEEEcccccccCCc------hhHHHHHHHHHHcccCCcEEEEEeecc--cccchHHHHHHHHHHcC
Q 047630 300 DIVHSMHVLSNWIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFC--VGAQLEDVYVPLIESVG 358 (392)
Q Consensus 300 DlV~s~~~l~~~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~--~~~~l~~~l~~ll~~aG 358 (392)
|+|++......-... .....++..+.++|||||+|++..... ..+++.+.+.+...++|
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~g 285 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG 285 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcC
Confidence 999986433211111 123457888899999999998876332 22334444555566666
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.50 E-value=7.4e-08 Score=81.69 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC---CccEEEeccCc-CCCCCCcccEEE
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG---VVPLYISISQR-LPFFDNTLDIVH 303 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~-Lpf~d~sFDlV~ 303 (392)
.+.+| ||+|||+|.++...+.+|+ .|+++|.|. ...+ .+...+ .+.++.+|+.. +....++||+|+
T Consensus 14 ~g~~v---lDl~~GtG~~~iea~~rga~~v~~ve~~~--~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 14 NGGRV---LDLFAGSGGLAIEAVSRGMSAAVLVEKNR--KAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CSCEE---EEETCTTCHHHHHHHHTTCCEEEEECCCH--HHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeE---EEcCCccCHHHHHHHHhCcceeeeehhch--hhhhhhhhhhhhcccccchhhhcccccccccccccccceeE
Confidence 44555 9999999999999888886 677755443 3332 223333 26777888655 345678999999
Q ss_pred EcccccccCCchhHHHHHHHHH--HcccCCcEEEEEee
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIY--RVLRPGGLFWLDHF 339 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~--RvLKPGG~lii~~~ 339 (392)
+...+.. ......+..+. +.|+|||.+++.+-
T Consensus 89 ~DPPy~~----~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 89 LDPPYAK----ETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp ECCSSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred echhhcc----chHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 8644322 33344555553 67999999998753
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=2.2e-06 Score=78.44 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhCC--CCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcCC---ccEEEecc
Q 047630 221 LDFSIDEVLATKK--PGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRGV---VPLYISIS 289 (392)
Q Consensus 221 ~~~lI~~ll~l~~--~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~ 289 (392)
+..++++++.... ......|||+|||+|..+..++.+ +..++|+|+|. ...+ .+...++ +.+...+.
T Consensus 44 ~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~--~al~~A~~N~~~n~l~~~~~~~~~~~ 121 (250)
T d2h00a1 44 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDD--MCFNYAKKNVEQNNLSDLIKVVKVPQ 121 (250)
T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCH--HHHHHHHHHHHHhCCCcceeeeeecc
Confidence 3445666553221 122335699999999999998884 78888866554 3332 2333332 44454432
Q ss_pred CcC------CCCCCcccEEEEcccccccCCc--------------------------------hhHHHHHHHHHHcccCC
Q 047630 290 QRL------PFFDNTLDIVHSMHVLSNWIPT--------------------------------TLLHFLMFDIYRVLRPG 331 (392)
Q Consensus 290 ~~L------pf~d~sFDlV~s~~~l~~~~~~--------------------------------~~l~~~L~el~RvLKPG 331 (392)
... ...+++||+|+|+-.++.-.+. .-...++++..+.++..
T Consensus 122 ~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~ 201 (250)
T d2h00a1 122 KTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRL 201 (250)
T ss_dssp TCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGB
T ss_pred HHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcC
Confidence 221 2245789999999776531100 02455777888889999
Q ss_pred cEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 332 GLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 332 G~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
|++.... .....+ +.+.+.+++.|+..++..
T Consensus 202 g~~t~~i--g~~~~l-~~i~~~L~~~g~~~i~~i 232 (250)
T d2h00a1 202 RWYSCML--GKKCSL-APLKEELRIQGVPKVTYT 232 (250)
T ss_dssp SCEEEEE--SSTTSH-HHHHHHHHHTTCSEEEEE
T ss_pred cEEEEEe--cchhhH-HHHHHHHHHcCCCeEEEE
Confidence 9875432 222333 337778899999877655
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.35 E-value=4e-07 Score=78.69 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=61.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC-ccEEEeccCc----CCCCCCcccEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRGV-VPLYISISQR----LPFFDNTLDIV 302 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~-i~~~~~d~~~----Lpf~d~sFDlV 302 (392)
..++++ ||+|||+|.++...+.+|..++++ |.+....+ .+...+. ..+...+... ......+||+|
T Consensus 40 ~~g~~v---LDl~~G~G~~~i~a~~~ga~vv~v--D~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~I 114 (171)
T d1ws6a1 40 PRRGRF---LDPFAGSGAVGLEAASEGWEAVLV--EKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp TTCCEE---EEETCSSCHHHHHHHHTTCEEEEE--CCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeE---EEeccccchhhhhhhhccchhhhc--ccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCcccee
Confidence 455556 999999999999999999999884 45333333 2333342 2344333321 23355789999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
++.-.+.. ...+.+..++. ...|+|||++++.+-
T Consensus 115 f~DPPY~~-~~~~~l~~l~~--~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 115 FMAPPYAM-DLAALFGELLA--SGLVEAGGLYVLQHP 148 (171)
T ss_dssp EECCCTTS-CTTHHHHHHHH--HTCEEEEEEEEEEEE
T ss_pred EEcccccc-CHHHHHHHHHH--cCCcCCCeEEEEEec
Confidence 98754432 11222222222 357999999988753
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.34 E-value=8.3e-07 Score=84.18 Aligned_cols=131 Identities=12% Similarity=0.019 Sum_probs=82.9
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH--HHHhcCC----ccEEEeccCcC----CCCCCcc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN--FIASRGV----VPLYISISQRL----PFFDNTL 299 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~--~aa~rg~----i~~~~~d~~~L----pf~d~sF 299 (392)
+.++.+| ||++||+|.++..++..|. .|+++|++..+.... .+..+++ +.++.+|+.+. .-..++|
T Consensus 142 ~~~g~~V---Ldlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 142 SAAGKTV---LNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp TTBTCEE---EEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred hhCCCce---eecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence 4455556 9999999999999888776 688877665322221 3333442 56888886432 2245689
Q ss_pred cEEEEcccccc------cCCchhHHHHHHHHHHcccCCcEEEEEeecc--cccchHHHHHHHHHHcCCeEEEE
Q 047630 300 DIVHSMHVLSN------WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC--VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 300 DlV~s~~~l~~------~~~~~~l~~~L~el~RvLKPGG~lii~~~~~--~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
|+|++.-.-.. +.-..+...++..+.++|+|||+|++..... ..+++.+.+.+.+.+.|...+..
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 99998632110 0011234568999999999999999876422 23334444555566667665544
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.32 E-value=4.2e-07 Score=80.22 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----C-CccEEEeccCcC-
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRL- 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~L- 292 (392)
.+..++.+ ...+++.+ ||++||+|.++..+++. +..++++| .+..+.+.+.++ + .+.++.++...+
T Consensus 12 l~evi~~l-~~~~~~~~---lD~t~G~Gghs~~il~~~~~~~vi~~D--~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~ 85 (192)
T d1m6ya2 12 VREVIEFL-KPEDEKII---LDCTVGEGGHSRAILEHCPGCRIIGID--VDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 85 (192)
T ss_dssp HHHHHHHH-CCCTTCEE---EETTCTTSHHHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred HHHHHHhh-CCCCCCEE---EEecCCCcHHHHHHHhcCCCCeEEEee--chHHHHHHHHHhhccccccccchhHHHhhHH
Confidence 34444333 34555656 99999999999999984 56777755 544555544432 2 367788776554
Q ss_pred ----CCCCCcccEEEEccccccc--C----CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHH
Q 047630 293 ----PFFDNTLDIVHSMHVLSNW--I----PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIES 356 (392)
Q Consensus 293 ----pf~d~sFDlV~s~~~l~~~--~----~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~ 356 (392)
.+..++||.|+.-..+... . .-...+..|..+.++|+|||.+++..|...++.. +...+.+
T Consensus 86 ~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~---vk~~f~~ 156 (192)
T d1m6ya2 86 FLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRI---VKETFRN 156 (192)
T ss_dssp HHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHH---HHHHHHH
T ss_pred HHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHH---HHHHHhh
Confidence 3346789999876554221 0 1134567899999999999999988876544332 4445554
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.31 E-value=4.9e-07 Score=81.01 Aligned_cols=112 Identities=26% Similarity=0.352 Sum_probs=73.8
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH---cCCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME---RNITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRL 292 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~---~g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~L 292 (392)
.++..+....+..+| ||+|||+|..+..|++ .+.+++++|++ ....+. +.+.| .++++.++..++
T Consensus 46 ~lL~~lv~~~kpk~I---LEiGt~~G~Sti~la~al~~~g~v~sid~~--~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~ 120 (214)
T d2cl5a1 46 QIMDAVIREYSPSLV---LELGAYCGYSAVRMARLLQPGARLLTMEMN--PDYAAITQQMLNFAGLQDKVTILNGASQDL 120 (214)
T ss_dssp HHHHHHHHHHCCSEE---EEECCTTSHHHHHHHTTCCTTCEEEEEESC--HHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHhhCCCEE---EEEccCchhHHHHHHHhCCCccEEEEEecc--HHHHHHHHHHHHHcCCCccceeeecccccc
Confidence 455555554443445 9999999999999997 35688885544 343332 23334 378888885542
Q ss_pred ------CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc
Q 047630 293 ------PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG 343 (392)
Q Consensus 293 ------pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~ 343 (392)
.+..++||+|+.-.. .+.......+.+..+.|||||++++++.....
T Consensus 121 l~~l~~~~~~~~~D~ifiD~~----~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g 173 (214)
T d2cl5a1 121 IPQLKKKYDVDTLDMVFLDHW----KDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 173 (214)
T ss_dssp GGGHHHHSCCCCEEEEEECSC----GGGHHHHHHHHHHTTCEEEEEEEEESCCCCCC
T ss_pred ccchhhcccccccceeeeccc----ccccccHHHHHHHhCccCCCcEEEEeCcCCCC
Confidence 234578999987532 22122223577788999999999999876553
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.31 E-value=3.6e-07 Score=84.93 Aligned_cols=133 Identities=12% Similarity=0.025 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHH----HHHhcCC---ccEEEeccCc-
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNN----FIASRGV---VPLYISISQR- 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~~- 291 (392)
++.+++.++..........+||+|||+|..+..+++ .+..|+++|++. ...+ ++.+.+. +.+..++...
T Consensus 95 TE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~--~Al~~A~~Na~~~~~~~~~~i~~~~~~~~ 172 (271)
T d1nv8a_ 95 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSS--KAVEIARKNAERHGVSDRFFVRKGEFLEP 172 (271)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCH--HHHHHHHHHHHHTTCTTSEEEEESSTTGG
T ss_pred hhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhh--hHHHHHHHHHHHcCCCceeEEeecccccc
Confidence 777887776543322334569999999998888877 467888866544 3333 3333342 3455555443
Q ss_pred CCCCCCcccEEEEccccccc----------C-------CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHH
Q 047630 292 LPFFDNTLDIVHSMHVLSNW----------I-------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLI 354 (392)
Q Consensus 292 Lpf~d~sFDlV~s~~~l~~~----------~-------~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll 354 (392)
++...+.||+|+++-....- . ..+.+..+-+-+.+.|+|||++++..-.... +.+.+++
T Consensus 173 ~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~----~~v~~l~ 248 (271)
T d1nv8a_ 173 FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQV----EELKKIV 248 (271)
T ss_dssp GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCH----HHHTTTS
T ss_pred cccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHH----HHHHHHH
Confidence 33344789999998543210 0 1112222333356889999999988754433 3355677
Q ss_pred HHcCC
Q 047630 355 ESVGF 359 (392)
Q Consensus 355 ~~aGf 359 (392)
++.||
T Consensus 249 ~~~g~ 253 (271)
T d1nv8a_ 249 SDTVF 253 (271)
T ss_dssp TTCEE
T ss_pred HhCCE
Confidence 77765
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.30 E-value=9.2e-07 Score=78.31 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=48.1
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
+|||+|||+|.++..++..|. .|+++|+| ....+.+.++ ..+.++++|+.+++ +.||+|+++-.+
T Consensus 51 ~VLDlGcGtG~l~i~a~~~ga~~V~~vDid--~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 51 SVIDAGTGNGILACGSYLLGAESVTAFDID--PDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp EEEEETCTTCHHHHHHHHTTBSEEEEEESC--HHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred EEEEeCCCCcHHHHHHHHcCCCcccccccC--HHHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 349999999999998888875 58886654 3444433333 23789999988764 689999998665
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.24 E-value=1.7e-06 Score=81.55 Aligned_cols=125 Identities=10% Similarity=0.113 Sum_probs=79.4
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHH----HhcC----CccEEEeccCcC----CCCCCc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFI----ASRG----VVPLYISISQRL----PFFDNT 298 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~a----a~rg----~i~~~~~d~~~L----pf~d~s 298 (392)
..++.+| ||++||+|.++..++..|.+|++ +|.+....+.+ ..++ .+.++++|+..+ ....++
T Consensus 130 ~~~~~rV---Ldlf~~tG~~sl~aa~~GA~V~~--VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~ 204 (309)
T d2igta1 130 ADRPLKV---LNLFGYTGVASLVAAAAGAEVTH--VDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGST 204 (309)
T ss_dssp SSSCCEE---EEETCTTCHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred ccCCCeE---EEecCCCcHHHHHHHhCCCeEEE--EeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCC
Confidence 3344455 99999999999999999999988 55544444422 2223 267888886543 224578
Q ss_pred ccEEEEcccc---c----ccCCchhHHHHHHHHHHcccCCcEEEEEeecccc---cchHHHHHHHHHHcCCe
Q 047630 299 LDIVHSMHVL---S----NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---AQLEDVYVPLIESVGFN 360 (392)
Q Consensus 299 FDlV~s~~~l---~----~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---~~l~~~l~~ll~~aGf~ 360 (392)
||+|++.-.- . .+.-...+..++..+.++|+|||.+++....+.. ..+.+.+.+.+..+|-.
T Consensus 205 fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~ 276 (309)
T d2igta1 205 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGV 276 (309)
T ss_dssp BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSE
T ss_pred CCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCc
Confidence 9999985221 1 1111234556778888999999987766554432 23344455556666644
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.21 E-value=8.9e-06 Score=71.78 Aligned_cols=115 Identities=9% Similarity=0.111 Sum_probs=69.9
Q ss_pred EEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHh----cC-CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 240 GLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIAS----RG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~----rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
|||+|||+|.++..++.+|. .|+++|+|. .....+.+ .+ ...++.+|...+ ++.||+|+++-.+.....
T Consensus 50 vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~--~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~~~~ 124 (201)
T d1wy7a1 50 VADLGAGTGVLSYGALLLGAKEVICVEVDK--EAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGSQRK 124 (201)
T ss_dssp EEEETCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSSSST
T ss_pred EEECcCcchHHHHHHHHcCCCEEEEEcCcH--HHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCccccccc
Confidence 49999999999999888885 788866543 33333322 22 246677777665 467999999876644322
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
..+. .++. +.+.+++.++..+... ....+.+..+..+.|+......
T Consensus 125 ~~d~-~~l~---~~~~~~~~v~~ih~~~--~~~~~~i~~~~~~~g~~i~~~~ 170 (201)
T d1wy7a1 125 HADR-PFLL---KAFEISDVVYSIHLAK--PEVRRFIEKFSWEHGFVVTHRL 170 (201)
T ss_dssp TTTH-HHHH---HHHHHCSEEEEEEECC--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred cccH-HHHH---HHHhhcccchhcccch--HHHHHHHHHHHhhcCceEEEEE
Confidence 2332 2222 3344566665544322 2233446667788887665443
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=3e-06 Score=76.07 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=74.5
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQR 291 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~ 291 (392)
..++..+......++| ||||||+|+-+..+++. +-+++++++|. ...+. ..+.| .+.++.+++..
T Consensus 48 g~lL~~L~~~~~~k~v---LEiGt~~GyStl~~a~al~~~g~i~tie~~~--~~~~~A~~~~~~ag~~~~i~~~~Gda~e 122 (219)
T d2avda1 48 AQLLANLARLIQAKKA---LDLGTFTGYSALALALALPADGRVVTCEVDA--QPPELGRPLWRQAEAEHKIDLRLKPALE 122 (219)
T ss_dssp HHHHHHHHHHTTCCEE---EEECCTTSHHHHHHHTTSCTTCEEEEEESCS--HHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHccCCCeE---EEEechhhHHHHHHHHhCCCCceEEEEeech--hHHHHHHHHHHhcCccceEEEEEeehhh
Confidence 4455566655554555 99999999999999973 56788866544 33332 22223 37788887533
Q ss_pred -CC-----CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 292 -LP-----FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 292 -Lp-----f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
++ ..+++||+|+...- .......+..+.+.|+|||++++++...
T Consensus 123 ~l~~~~~~~~~~~fD~ifiD~d------k~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 123 TLDELLAAGEAGTFDVAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp HHHHHHHTTCTTCEEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cchhhhhhcccCCccEEEEeCC------HHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 21 24678999997532 2334567889999999999999998754
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=5.7e-06 Score=71.89 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=65.7
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC--CccEEEeccCc-CCCCCCcccEEEE
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG--VVPLYISISQR-LPFFDNTLDIVHS 304 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~-Lpf~d~sFDlV~s 304 (392)
.+.++ ||++||+|.++...+.+|+ .|+.+| .+..... .+...+ .+.++.+|+.. +......||+|++
T Consensus 43 ~~~~v---LDlfaGsG~~giealsrGa~~v~~VE--~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~ 117 (183)
T d2fpoa1 43 VDAQC---LDCFAGSGALGLEALSRYAAGATLIE--MDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV 117 (183)
T ss_dssp TTCEE---EETTCTTCHHHHHHHHTTCSEEEEEC--SCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred chhhh---hhhhccccceeeeEEecCcceeEEEE--EeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEE
Confidence 44555 9999999999999999987 577744 4334333 222222 24566666543 3345678999999
Q ss_pred cccccccCCchhHHHHHHHHHH--cccCCcEEEEEeec
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYR--VLRPGGLFWLDHFF 340 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~R--vLKPGG~lii~~~~ 340 (392)
.-.+.. ...+.++..+.+ .|+++|++++.+..
T Consensus 118 DPPY~~----~~~~~~l~~l~~~~~L~~~~iIiiE~~~ 151 (183)
T d2fpoa1 118 DPPFRR----GLLEETINLLEDNGWLADEALIYVESEV 151 (183)
T ss_dssp CCSSST----TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred cCcccc----chHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 865432 233456666654 69999999987543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=2.3e-05 Score=67.96 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=86.8
Q ss_pred EEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d~sFDlV~s~~~ 307 (392)
.|||+||+.|.|+..+.+. ...++++|+.. +. .-..+.++.++..... ...+.||+|++-.+
T Consensus 25 ~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---~~----~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a 97 (180)
T d1ej0a_ 25 TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MD----PIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CC----CCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEeccCCcceEEEEeeccccceEEEeeccc---cc----ccCCceEeecccccchhhhhhhhhccCcceeEEEeccc
Confidence 3499999999999988873 35677755332 11 1112456676654321 24567999999877
Q ss_pred ccccCCc--------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccce
Q 047630 308 LSNWIPT--------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREM 379 (392)
Q Consensus 308 l~~~~~~--------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ 379 (392)
..-.... +-....+.-+.++||+||.|++-.|.. +.. ..+...++.. |+.+....-.... ....|.
T Consensus 98 p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g--~~~-~~l~~~l~~~-F~~V~~~KP~aSR--~~SsE~ 171 (180)
T d1ej0a_ 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG--EGF-DEYLREIRSL-FTKVKVRKPDSSR--ARSREV 171 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS--TTH-HHHHHHHHHH-EEEEEEECCTTSC--TTCCEE
T ss_pred chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC--ccH-HHHHHHHHhh-cCEEEEECCCCcc--cCCceE
Confidence 6432111 112345666789999999999998764 233 3366666665 8888765332221 356799
Q ss_pred eeEEEEEcC
Q 047630 380 YLSALLEKP 388 (392)
Q Consensus 380 ylsai~~Kp 388 (392)
|+.+.-.||
T Consensus 172 Ylv~~g~Kp 180 (180)
T d1ej0a_ 172 YIVATGRKP 180 (180)
T ss_dssp EEEEEEECC
T ss_pred EEEEecCCC
Confidence 997777777
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.91 E-value=1.2e-05 Score=70.13 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=85.3
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc--CCccEEEeccCcCC-----CCCCcccEE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR--GVVPLYISISQRLP-----FFDNTLDIV 302 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r--g~i~~~~~d~~~Lp-----f~d~sFDlV 302 (392)
...+++.+ +|..+|.|.++..+.+.+..|+|+|.|. .....+.+. ..+.++++....+. +..+.+|.|
T Consensus 15 ~~~~g~~~---vD~T~G~GGhs~~iL~~~~~viaiD~D~--~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgI 89 (182)
T d1wg8a2 15 AVRPGGVY---VDATLGGAGHARGILERGGRVIGLDQDP--EAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGI 89 (182)
T ss_dssp TCCTTCEE---EETTCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEE---EEeCCCCcHHHHHHhcccCcEEEEhhhh--hHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEE
Confidence 35566655 9999999999999999988999966554 333333332 23567777655432 234679999
Q ss_pred EEcccccccC--Cc----hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 303 HSMHVLSNWI--PT----TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 303 ~s~~~l~~~~--~~----~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
+.-..+.... +. ..+...|.....+|+|||.+.+..|...++ +.+...+++.+++.+.
T Consensus 90 l~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed---~ivk~~~~e~~~k~i~ 153 (182)
T d1wg8a2 90 LADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLED---RVVKRFLRESGLKVLT 153 (182)
T ss_dssp EEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHH---HHHHHHHHHHCSEESC
T ss_pred EEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchh---HHHHHHHhhccceecc
Confidence 9875553321 11 123457888899999999999888765433 3367777887776654
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.88 E-value=7.6e-06 Score=71.12 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=62.8
Q ss_pred EEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHH----HHhcC---CccEEEeccCcC----CCCCCcccEEEEccc
Q 047630 240 GLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRL----PFFDNTLDIVHSMHV 307 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~L----pf~d~sFDlV~s~~~ 307 (392)
|||++||+|.++...+.+|+ .|+.+|.|. ..... +...+ .+.++.+|+.++ .-....||+|++.-.
T Consensus 45 vLDlfaGsG~~g~ea~srGa~~v~~ve~~~--~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPP 122 (182)
T d2fhpa1 45 ALDLYSGSGGLAIEAVSRGMDKSICIEKNF--AALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP 122 (182)
T ss_dssp EEETTCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred EEEcccccccccceeeecchhHHHHHHHHH--HHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEechh
Confidence 49999999999999999987 588855443 33332 22222 256778876542 224567999998765
Q ss_pred ccccCCchhHHHHHHHHHH--cccCCcEEEEEee
Q 047630 308 LSNWIPTTLLHFLMFDIYR--VLRPGGLFWLDHF 339 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~R--vLKPGG~lii~~~ 339 (392)
+.. ......+..+.. .|++||++++.+-
T Consensus 123 Y~~----~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 123 YAK----QEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp GGG----CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhh----hHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 422 233456777654 6999999988753
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.86 E-value=0.00015 Score=67.73 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=69.4
Q ss_pred cEEEEEcCCcchHHHHHHH----c-CC--EEEEEecCCCchhHHHHH----hcC-CccEEEeccCcCCCCCCcccEEEEc
Q 047630 238 RIGLDIGGGVATFAVRMME----R-NI--TIVTTSMNLNGPFNNFIA----SRG-VVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~----~-g~--~vvg~~iD~~a~~~~~aa----~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.+|||.|||+|.++..+.+ . .. .++|+| ++......+. ..+ ......++.... .....||+|+++
T Consensus 119 ~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~d--i~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~N 195 (328)
T d2f8la1 119 VSILDPACGTANLLTTVINQLELKGDVDVHASGVD--VDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD 195 (328)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEE--SCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CEEEeCCCCcchhHHHHHHHHHhccCccceEEEec--ccHHHHHHHHHHHHHhhhhhhhhccccccc-cccccccccccC
Confidence 3459999999999887764 1 23 456644 4333333221 112 245556654433 345789999999
Q ss_pred ccccccCCch---------------hHHHHHHHHHHcccCCcEEEEEeec--ccccchHHHHHHHHHHcCCeEEEEE
Q 047630 306 HVLSNWIPTT---------------LLHFLMFDIYRVLRPGGLFWLDHFF--CVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 306 ~~l~~~~~~~---------------~l~~~L~el~RvLKPGG~lii~~~~--~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
..+......+ .-..++..+.+.|+|||++.+.... -.... .+.+++.+.+. +......
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~-~~~lR~~L~~~-~~i~~ii 270 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD-FAKVDKFIKKN-GHIEGII 270 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT-HHHHHHHHHHH-EEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCch-hHHHHHHHHhC-CcEEEEE
Confidence 7663221111 1123688899999999988555421 11222 33466665554 3444333
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.83 E-value=2.3e-05 Score=70.56 Aligned_cols=108 Identities=11% Similarity=0.066 Sum_probs=72.9
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH---cCCEEEEEecCCCchhHH----HHHhcCC---ccEEEeccCcC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME---RNITIVTTSMNLNGPFNN----FIASRGV---VPLYISISQRL 292 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~---~g~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~~L 292 (392)
.++..+.......+| |+||+++|+-+..|++ .+..+++++.|. ...+ ...+.|. +.++.+++...
T Consensus 49 ~~L~~L~~~~~~k~i---LEiGT~~GyStl~la~al~~~g~v~tie~~~--~~~~~A~~~~~~~g~~~~i~~~~g~a~~~ 123 (227)
T d1susa1 49 QFLSMLLKLINAKNT---MEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYELGLPVIKKAGVDHKIDFREGPALPV 123 (227)
T ss_dssp HHHHHHHHHHTCCEE---EEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHhcCCCcE---EEecchhhhhHHHHHhhCCCCcEEEEEeccc--hhHHHHHHHHHHhccccceeeeehHHHHH
Confidence 455555555444455 9999999999999997 356788866554 3333 2233343 77888875432
Q ss_pred -C------CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 293 -P------FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 293 -p------f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+ ...++||+|+.-.- .......+..+.+.|+|||++++++...
T Consensus 124 L~~l~~~~~~~~~fD~iFiDa~------k~~y~~~~e~~~~ll~~gGiii~DNvl~ 173 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNTLW 173 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred HHHHHhccccCCceeEEEeccc------hhhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence 1 13568999997532 2334568889999999999999998653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=0.00022 Score=67.38 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=85.2
Q ss_pred cHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH--HHHhcC--CccEEEeccCcC---
Q 047630 220 GLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN--FIASRG--VVPLYISISQRL--- 292 (392)
Q Consensus 220 ~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~--~aa~rg--~i~~~~~d~~~L--- 292 (392)
..+.+++.+++......-..|||+-||+|.++..|++.+..|+|++++.++...+ .+..++ .+.++.++.+..
T Consensus 196 ~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~ 275 (358)
T d1uwva2 196 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 275 (358)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred hhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence 3666777766543222223459999999999999999999999966554222221 333344 367788876542
Q ss_pred -CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 293 -PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 293 -pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+.....||+|+..-.- .++.+++..+.+. +|.-+++++ |....+...+.. +.+.||+..+.....
T Consensus 276 ~~~~~~~~d~vilDPPR------~G~~~~~~~l~~~-~~~~ivYVS---Cnp~TlaRDl~~-l~~~gy~l~~i~~~D 341 (358)
T d1uwva2 276 QPWAKNGFDKVLLDPAR------AGAAGVMQQIIKL-EPIRIVYVS---CNPATLARDSEA-LLKAGYTIARLAMLD 341 (358)
T ss_dssp SGGGTTCCSEEEECCCT------TCCHHHHHHHHHH-CCSEEEEEE---SCHHHHHHHHHH-HHHTTCEEEEEEEEC
T ss_pred hhhhhccCceEEeCCCC------ccHHHHHHHHHHc-CCCEEEEEe---CCHHHHHHHHHH-HHHCCCeEeEEEEEe
Confidence 3345679998865332 2333466666653 677677666 333334444443 456799988777554
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.80 E-value=0.00041 Score=60.28 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=67.7
Q ss_pred EEEEEcCCcchHHHHHHH---cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCc-
Q 047630 239 IGLDIGGGVATFAVRMME---RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPT- 314 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~---~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~- 314 (392)
+|||.|||+|.++..+.+ ....++|+++|.... ..+. ...++.++..... ....||+|+++..+......
T Consensus 22 ~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~---~~~~--~~~~~~~~~~~~~-~~~~fd~ii~npP~~~~~~~~ 95 (223)
T d2ih2a1 22 RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL---DLPP--WAEGILADFLLWE-PGEAFDLILGNPPYGIVGEAS 95 (223)
T ss_dssp EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC---CCCT--TEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTT
T ss_pred EEEECCCchHHHHHHHHHhccccceEEeeecCHHHH---hhcc--cceeeeeehhccc-cccccceecccCccccccccc
Confidence 349999999999888876 346788877665221 1111 1245566655544 35689999998665321100
Q ss_pred -------------------------hhHHHHHHHHHHcccCCcEEEEEee--cccccchHHHHHHHHHHcC
Q 047630 315 -------------------------TLLHFLMFDIYRVLRPGGLFWLDHF--FCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 315 -------------------------~~l~~~L~el~RvLKPGG~lii~~~--~~~~~~l~~~l~~ll~~aG 358 (392)
.....++..+.+.||+||++.+... +...... +.+++.+.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~-~~lR~~l~~~~ 165 (223)
T d2ih2a1 96 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDF-ALLREFLAREG 165 (223)
T ss_dssp TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGG-HHHHHHHHHHS
T ss_pred cccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcch-HHHHHHHHhcC
Confidence 0123567888999999999866542 2222222 33555555543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.77 E-value=4e-06 Score=76.55 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=63.2
Q ss_pred ccceeccCCCCcHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccE
Q 047630 209 KIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPL 284 (392)
Q Consensus 209 ~~~w~~~~~~~~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~ 284 (392)
+|+|+....- .+.+++ .+.+.++..| ||||||+|.++..|++.+..++++++| ....+.+.++ ..+.+
T Consensus 8 GQnFL~d~~i--i~kIv~-~~~~~~~d~V---LEIGpG~G~LT~~L~~~~~~v~aIE~D--~~l~~~l~~~~~~~~n~~i 79 (245)
T d1yuba_ 8 SQNFLTSEKV--LNQIIK-QLNLKETDTV---YEIGTGKGHLTTKLAKISKQVTSIELD--SHLFNLSSEKLKLNTRVTL 79 (245)
T ss_dssp CCCBCCCTTT--HHHHHH-HCCCCSSEEE---EECSCCCSSCSHHHHHHSSEEEESSSS--CSSSSSSSCTTTTCSEEEE
T ss_pred CCcccCCHHH--HHHHHH-hcCCCCCCeE---EEECCCccHHHHHHHhhcCceeEeeec--ccchhhhhhhhhhccchhh
Confidence 4677765441 333333 2334444445 999999999999999999999995544 3443333222 23678
Q ss_pred EEeccCcCCCCCCcccEEEEcccc
Q 047630 285 YISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 285 ~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
+.+|+.+++++...++.|+++..+
T Consensus 80 i~~D~l~~~~~~~~~~~vv~NLPY 103 (245)
T d1yuba_ 80 IHQDILQFQFPNKQRYKIVGNIPY 103 (245)
T ss_dssp CCSCCTTTTCCCSSEEEEEEECCS
T ss_pred hhhhhhccccccceeeeEeeeeeh
Confidence 889999999888888888887765
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.74 E-value=0.00017 Score=67.58 Aligned_cols=138 Identities=16% Similarity=0.143 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH---cCCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME---RNITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~---~g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~ 291 (392)
...++..++...++..| ||+++|.|.=+..+++ ....+++ .|.+...... +.+.|. +.....|...
T Consensus 104 aS~l~~~~l~~~~g~~v---lD~CAapGgKt~~l~~~~~~~~~i~a--~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~ 178 (313)
T d1ixka_ 104 SSMYPPVALDPKPGEIV---ADMAAAPGGKTSYLAQLMRNDGVIYA--FDVDENRLRETRLNLSRLGVLNVILFHSSSLH 178 (313)
T ss_dssp HHHHHHHHHCCCTTCEE---EECCSSCSHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG
T ss_pred cccchhhcccCCcccee---eecccchhhhhHhhhhhcccccceee--eccCHHHHHHHHHHHHHHHhhccccccccccc
Confidence 56666677777777766 9999999997777766 3445677 5554444432 233343 3344556666
Q ss_pred CCCCCCcccEEEEc------ccccc-----c-CCch-------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHH
Q 047630 292 LPFFDNTLDIVHSM------HVLSN-----W-IPTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352 (392)
Q Consensus 292 Lpf~d~sFDlV~s~------~~l~~-----~-~~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ 352 (392)
++..++.||.|+.- .++.. | ...+ ...++|.++.+.|||||+++.+..--..++-++.+..
T Consensus 179 ~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~ 258 (313)
T d1ixka_ 179 IGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQW 258 (313)
T ss_dssp GGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred cccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHH
Confidence 66678899999863 11111 0 0111 1346788999999999999888765555555677888
Q ss_pred HHHHcCCeEEE
Q 047630 353 LIESVGFNKLK 363 (392)
Q Consensus 353 ll~~aGf~~i~ 363 (392)
.+++.+|+.+.
T Consensus 259 ~L~~~~~~~~~ 269 (313)
T d1ixka_ 259 ALDNFDVELLP 269 (313)
T ss_dssp HHHHSSEEEEC
T ss_pred HHhcCCCEEee
Confidence 88887776653
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.60 E-value=4.1e-05 Score=69.09 Aligned_cols=81 Identities=12% Similarity=0.232 Sum_probs=56.6
Q ss_pred HHHHHHHhh---CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCC
Q 047630 223 FSIDEVLAT---KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFF 295 (392)
Q Consensus 223 ~lI~~ll~l---~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~ 295 (392)
..++.++.. .+++.| ||||||+|.++..|++.+..++++++| ....+...++ ..+.++.+|+..++++
T Consensus 8 ~i~~~iv~~~~~~~~d~V---lEIGpG~G~LT~~Ll~~~~~v~avE~D--~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~ 82 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNI---FEIGSGKGHFTLELVQRCNFVTAIEID--HKLCKTTENKLVDHDNFQVLNKDILQFKFP 82 (235)
T ss_dssp HHHHHHHTTCCCCTTCEE---EEECCTTSHHHHHHHHHSSEEEEECSC--HHHHHHHHHHTTTCCSEEEECCCGGGCCCC
T ss_pred HHHHHHHHhcCCCCCCeE---EEECCCchHHHHHHHhCcCceEEEeec--cchHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 345555543 344555 999999999999999999999995544 4555544433 2478899999988876
Q ss_pred CCcccEEEEcccc
Q 047630 296 DNTLDIVHSMHVL 308 (392)
Q Consensus 296 d~sFDlV~s~~~l 308 (392)
......|+++..+
T Consensus 83 ~~~~~~vv~NLPY 95 (235)
T d1qama_ 83 KNQSYKIFGNIPY 95 (235)
T ss_dssp SSCCCEEEEECCG
T ss_pred ccccceeeeeehh
Confidence 6555566666554
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.00079 Score=61.98 Aligned_cols=162 Identities=12% Similarity=0.043 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcCC-ccEEEeccCcC-
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRGV-VPLYISISQRL- 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg~-i~~~~~d~~~L- 292 (392)
...++..++...++..| ||+++|.|.=+..+++. +..+++.|++. .... .+.+.|. ......+....
T Consensus 90 sS~l~~~~L~~~~g~~v---LD~CAaPGgKt~~la~l~~~~~i~a~d~~~--~R~~~l~~~~~r~g~~~~~~~~~~~~~~ 164 (284)
T d1sqga2 90 SAQGCMTWLAPQNGEHI---LDLCAAPGGKTTHILEVAPEAQVVAVDIDE--QRLSRVYDNLKRLGMKATVKQGDGRYPS 164 (284)
T ss_dssp HHHTHHHHHCCCTTCEE---EEESCTTCHHHHHHHHHCTTCEEEEEESST--TTHHHHHHHHHHTTCCCEEEECCTTCTH
T ss_pred cccccccccCcccccee---EeccCccccchhhhhhhhhhhhhhhhhcch--hhhhhHhhhhhcccccceeeeccccccc
Confidence 45556666766666666 99999999988888874 34677766554 3333 2333343 11222222211
Q ss_pred -CCCCCcccEEEEc------ccccc-------cCCc------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHH
Q 047630 293 -PFFDNTLDIVHSM------HVLSN-------WIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352 (392)
Q Consensus 293 -pf~d~sFDlV~s~------~~l~~-------~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ 352 (392)
....+.||.|+.- .++.. +.+. ....++|..+.+.|||||+++.+..--..++-++.+..
T Consensus 165 ~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~ 244 (284)
T d1sqga2 165 QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKA 244 (284)
T ss_dssp HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred hhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHH
Confidence 1245689999963 22211 1110 11346888999999999999988765555555666787
Q ss_pred HHHH-cCCeEEEEEEee----ccCCCCcccceeeEEEEEc
Q 047630 353 LIES-VGFNKLKWVVGR----KLDRGPELREMYLSALLEK 387 (392)
Q Consensus 353 ll~~-aGf~~i~w~~~~----k~d~~~~~~e~ylsai~~K 387 (392)
.+++ .+|+.+...... +.-......+.|+.|+++|
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~l~K 284 (284)
T d1sqga2 245 FLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 284 (284)
T ss_dssp HHHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred HHHhCCCcEEecCCCCCCCcEEECCCCCCcccEEEEEEEC
Confidence 8877 456655421100 0001112334455688887
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.49 E-value=0.00017 Score=67.56 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=77.0
Q ss_pred cccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh-----------cCCccEEEeccCcC-CCCCCcccE
Q 047630 236 TIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS-----------RGVVPLYISISQRL-PFFDNTLDI 301 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~-----------rg~i~~~~~d~~~L-pf~d~sFDl 301 (392)
+.+.||.||.|.|..+..+.+. ...++.+++|. ...+.+.+ ...++++.+|+... .-.+++||+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~--~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG--ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH--HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCH--HHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 3455699999999999999874 34788866554 33332211 12367888886543 224578999
Q ss_pred EEEcccccccC---Cchh--HHHHHHHHHHcccCCcEEEEEe--ecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 302 VHSMHVLSNWI---PTTL--LHFLMFDIYRVLRPGGLFWLDH--FFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 302 V~s~~~l~~~~---~~~~--l~~~L~el~RvLKPGG~lii~~--~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
|+.-.. ..+. .... -.++++.+.+.|+|||+++... ......+....+.+.+++..-.+.-|.
T Consensus 155 Ii~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~ 224 (312)
T d1uira_ 155 VIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYK 224 (312)
T ss_dssp EEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEE
Confidence 996432 1111 1111 2468999999999999997643 333334455556667777733444444
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.43 E-value=0.00035 Score=60.12 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcCC----ccEEEeccC---cCCCCCCccc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRGV----VPLYISISQ---RLPFFDNTLD 300 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg~----i~~~~~d~~---~Lpf~d~sFD 300 (392)
.+.++ ||+.||||.++...+.+|+ .|+.+|.| ..... .+..-+. ..+...+.. ........||
T Consensus 43 ~~~~v---LDlFaGsG~~glEalSRGA~~v~fVE~~--~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fD 117 (183)
T d2ifta1 43 HQSEC---LDGFAGSGSLGFEALSRQAKKVTFLELD--KTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFD 117 (183)
T ss_dssp TTCEE---EETTCTTCHHHHHHHHTTCSEEEEECSC--HHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred ccceE---eecccCccceeeeeeeecceeeEEeecc--cchhhhHhhHHhhhcccccccccccccccccccccccCCccc
Confidence 44555 9999999999999999997 67774443 33332 2222221 233334422 2233456799
Q ss_pred EEEEcccccccCCchhHHHHHHHHHH--cccCCcEEEEEeec
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYR--VLRPGGLFWLDHFF 340 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~R--vLKPGG~lii~~~~ 340 (392)
+|++--.+.. ...+.++..+.. .|+++|++++.+-.
T Consensus 118 lIFlDPPY~~----~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 118 VVFLDPPFHF----NLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp EEEECCCSSS----CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred EEEechhHhh----hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 9998765532 334556776654 79999999998643
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.35 E-value=0.00068 Score=61.05 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=76.1
Q ss_pred cEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCcCCC---CCCcccEEEEcc
Q 047630 238 RIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQRLPF---FDNTLDIVHSMH 306 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~Lpf---~d~sFDlV~s~~ 306 (392)
..++|||+|.|.-+..++- .+..++. +|.......+ +.+-++ +.++.+.++.+.. ..+.||+|++-.
T Consensus 72 ~~ilDiGSGaGfPGi~laI~~p~~~v~L--ves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 72 NTICDVGAGAGFPSLPIKICFPHLHVTI--VDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CeEEeecCCCchHHHHHHHhCCCcccee--ecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 3459999999998777775 4667777 4443444332 222343 4566666665532 246799999864
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+- . +..++.-....+++||.+++.--....+++. +....+...|++.....
T Consensus 150 va-~------l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~-~a~~~~~~~~~~~~~v~ 200 (239)
T d1xdza_ 150 VA-R------LSVLSELCLPLVKKNGLFVALKAASAEEELN-AGKKAITTLGGELENIH 200 (239)
T ss_dssp CS-C------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHH-HHHHHHHHTTEEEEEEE
T ss_pred hh-C------HHHHHHHHhhhcccCCEEEEECCCChHHHHH-HHHHHHHHcCCEEEEEE
Confidence 32 2 3458899999999999998876444334443 35667788888766544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.32 E-value=0.0007 Score=62.14 Aligned_cols=125 Identities=12% Similarity=0.138 Sum_probs=73.9
Q ss_pred cccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHh----------------cCCccEEEeccCcCCCCCCc
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIAS----------------RGVVPLYISISQRLPFFDNT 298 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~----------------rg~i~~~~~d~~~Lpf~d~s 298 (392)
+.+.||.||+|.|..+..+.+.. ..++.+++|. ...+.+.+ ...++++.+|+..+--.+++
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~--~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE--DVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH--HHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCH--HHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 34455999999999999988754 3576755543 43332221 11357788886543224578
Q ss_pred ccEEEEcccccccCCchh--HHHHHHHHHHcccCCcEEEEEee--cccccchHHHHHHHHHHcCCeEEEEE
Q 047630 299 LDIVHSMHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLDHF--FCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~~~--~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
||+|+.-.. ........ -.++++.+.+.|+|||+++.... ....+.... +.+.++++ |..+..-
T Consensus 150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~-~~~tl~~~-F~~v~~y 217 (276)
T d1mjfa_ 150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELIS-AYKEMKKV-FDRVYYY 217 (276)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHH-HHHHHHHH-CSEEEEE
T ss_pred CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHH-HHHHHHhh-CCeeEEE
Confidence 999997432 22222111 14689999999999999977542 222223333 44455555 6665543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.26 E-value=0.00049 Score=61.72 Aligned_cols=95 Identities=8% Similarity=0.045 Sum_probs=58.3
Q ss_pred EEEEcCCcchHHHHHHH------cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC----CCCCcccEEEEccccc
Q 047630 240 GLDIGGGVATFAVRMME------RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP----FFDNTLDIVHSMHVLS 309 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~------~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp----f~d~sFDlV~s~~~l~ 309 (392)
||+||++.|.-+..+++ ...+++++|+|++... ........+.++.+|..... +....+|+|+.-.. |
T Consensus 84 ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H 161 (232)
T d2bm8a1 84 IVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-IPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-H 161 (232)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-C
T ss_pred EEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-hhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC-c
Confidence 49999999986665553 3468888777652211 11122234788888765432 23456888775433 3
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
.. .....-+ ++...|++||++++.+..
T Consensus 162 ~~---~~v~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 162 AN---TFNIMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SS---HHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred ch---HHHHHHH-HHhcccCcCCEEEEEcCC
Confidence 31 2211222 466899999999998853
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00099 Score=58.64 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=68.4
Q ss_pred HHHHHHHH--hhCCCCcccEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCc
Q 047630 222 DFSIDEVL--ATKKPGTIRIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQR 291 (392)
Q Consensus 222 ~~lI~~ll--~l~~~~~ir~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~ 291 (392)
..+++.+. ...+++++ +|+|+|.|.-+..++- .+.+++. +|.......+ +.+-++ +.++.+.++.
T Consensus 52 rHi~DSl~~~~~~~~~~i---lDiGsGaG~PGi~laI~~p~~~~~L--ves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 126 (207)
T d1jsxa_ 52 RHILDSIVVAPYLQGERF---IDVGTGPGLPGIPLSIVRPEAHFTL--LDSLGKRVRFLRQVQHELKLENIEPVQSRVEE 126 (207)
T ss_dssp HHHHHHHHHGGGCCSSEE---EEETCTTTTTHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHTTCSSEEEEECCTTT
T ss_pred HHhcchHhhhhhhcCCce---eeeeccCCceeeehhhhcccceEEE--EecchHHHHHHHHHHHHcCCcceeeeccchhh
Confidence 34444432 33344555 9999999998877776 4567777 5554444432 233343 5677777887
Q ss_pred CCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 292 LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 292 Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+. .+.+||+|++..+ .. +..++.-+...+++||.+++.-
T Consensus 127 ~~-~~~~fD~V~sRA~-~~------~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 127 FP-SEPPFDGVISRAF-AS------LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SC-CCSCEEEEECSCS-SS------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred hc-cccccceehhhhh-cC------HHHHHHHHHHhcCCCcEEEEEC
Confidence 65 3568999887443 22 2458888899999999998775
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.18 E-value=0.00052 Score=62.00 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=69.3
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCc---hhHHHHHhcCCccEEEe-ccCcCCCCCCcccEEEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNG---PFNNFIASRGVVPLYIS-ISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a---~~~~~aa~rg~i~~~~~-d~~~Lpf~d~sFDlV~s 304 (392)
+.+.+.+ +|+|||.|.++..++++. ..+.|+++-.+. +........+++.+... ++..+ +++..|+|+|
T Consensus 64 ~~~~~~v---vDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l--~~~~~D~vlc 138 (257)
T d2p41a1 64 VTPEGKV---VDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLLC 138 (257)
T ss_dssp SCCCEEE---EEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEEE
T ss_pred ccCCCeE---EEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhc--CCCcCCEEEe
Confidence 4455555 999999999999999764 345554432111 11000000112233222 23333 4678999999
Q ss_pred ccccccc---CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC
Q 047630 305 MHVLSNW---IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 305 ~~~l~~~---~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG 358 (392)
-.+-..- .+......+|.-+.+.|+|||-|++-.+....++..+.+..+-...|
T Consensus 139 Dm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fg 195 (257)
T d2p41a1 139 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHG 195 (257)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHC
T ss_pred eCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhC
Confidence 8654211 11122235677778999999999887665544555554555555544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.86 E-value=0.0033 Score=57.93 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=76.6
Q ss_pred CcccEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHh----------cCCccEEEeccCcC--CCCCCccc
Q 047630 235 GTIRIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQRL--PFFDNTLD 300 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~L--pf~d~sFD 300 (392)
.+.+.||=||.|.|..+..+.+. + ..++.+++|. ...+.+.+ ...+.++.+|.... ...+++||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~--~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK--MVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCH--HHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 34566799999999999999985 3 3677766654 33332211 22467888875433 23457899
Q ss_pred EEEEcccccccCCch--hHHHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEE
Q 047630 301 IVHSMHVLSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 301 lV~s~~~l~~~~~~~--~l~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
+|+.-.. ....... --.++++.+++.|+|||+++...... ...+....+.+.+.++....+..
T Consensus 157 vIi~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y 222 (290)
T d1xj5a_ 157 AVIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNY 222 (290)
T ss_dssp EEEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEE
T ss_pred EEEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeE
Confidence 9997432 1111111 12468999999999999998864211 11222233555566664444443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.81 E-value=0.0099 Score=57.16 Aligned_cols=138 Identities=11% Similarity=0.029 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---------------CCEEEEEecCCCchhHH----HHHhcC-
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---------------NITIVTTSMNLNGPFNN----FIASRG- 280 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---------------g~~vvg~~iD~~a~~~~----~aa~rg- 280 (392)
+..++-+++...++.+| +|-.||+|.+...+.++ ...+.|.++|. .... .+.-++
T Consensus 150 Iv~~mv~ll~~~~~~~I---lDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~--~~~~la~~n~~l~g~ 224 (425)
T d2okca1 150 LIQAMVDCINPQMGETV---CDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTP--LVVTLASMNLYLHGI 224 (425)
T ss_dssp HHHHHHHHHCCCTTCCE---EETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCH--HHHHHHHHHHHHTTC
T ss_pred hhHhhheeccCccccee---eccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccH--HHHHHHHhhhhhcCC
Confidence 33344444433334455 99999999998777652 12467755443 2222 122223
Q ss_pred ---CccEEEeccCcCCCCCCcccEEEEcccccccCC--------------chhHHHHHHHHHHcccCCcEEEEEeecc--
Q 047630 281 ---VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP--------------TTLLHFLMFDIYRVLRPGGLFWLDHFFC-- 341 (392)
Q Consensus 281 ---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~--------------~~~l~~~L~el~RvLKPGG~lii~~~~~-- 341 (392)
...+..+|....+ ....||+|+++..+..-.. ...--.++..+.+.|++||++.+.....
T Consensus 225 ~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L 303 (425)
T d2okca1 225 GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVL 303 (425)
T ss_dssp CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHh
Confidence 2456666655433 4578999999966632100 0111248899999999999886554311
Q ss_pred cccchHHHHHHHHHHcCCeEEEEE
Q 047630 342 VGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 342 ~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
......+.+++.+.+. +.+....
T Consensus 304 ~~~~~~~~iR~~Ll~~-~~i~aIi 326 (425)
T d2okca1 304 FEAGAGETIRKRLLQD-FNLHTIL 326 (425)
T ss_dssp HCSTHHHHHHHHHHHH-EEEEEEE
T ss_pred hhhhhHHHHHHHHHHh-cchhHhh
Confidence 1122223466665554 2444333
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.0024 Score=58.71 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=75.5
Q ss_pred CcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHH----------hcCCccEEEeccCcC-CCCCCcccE
Q 047630 235 GTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIA----------SRGVVPLYISISQRL-PFFDNTLDI 301 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa----------~rg~i~~~~~d~~~L-pf~d~sFDl 301 (392)
...+.||-||.|.|..+..+.+. ...++.+++|. ...+.+. +...+.++.+|+... .-..++||+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~--~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE--DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCH--HHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence 34456699999999999999985 35777756554 3333221 112467888885442 224578999
Q ss_pred EEEcccccccCCchh--HHHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEE
Q 047630 302 VHSMHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 302 V~s~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
|+.-. ......... -.++++.+.|.|+|||++++..... ...+....+.+.+++. |..+.-
T Consensus 155 Ii~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~ 218 (285)
T d2o07a1 155 IITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAY 218 (285)
T ss_dssp EEEEC-C-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEE
T ss_pred EEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc-CCeeeE
Confidence 99753 222111111 2357999999999999998764221 1222233355556665 766654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.73 E-value=0.0007 Score=62.83 Aligned_cols=126 Identities=13% Similarity=0.050 Sum_probs=74.1
Q ss_pred cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh----------cCCccEEEeccCcC-CCCCCcccEE
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQRL-PFFDNTLDIV 302 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~L-pf~d~sFDlV 302 (392)
+.+.||-||.|.|..+..+.+.. ..++.+++|. ...+.+.+ ...++++.+|+... .-.+++||+|
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp--~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG--LVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 34566999999999999999853 4677766654 33332111 12367888875442 3345789999
Q ss_pred EEcccccccCCch--hHHHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeEEEE
Q 047630 303 HSMHVLSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 303 ~s~~~l~~~~~~~--~l~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
+.-..-....+.. .-.++++.+.+.|+|||+++...... ...+....+.+.++++ |..+.-
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v~~ 230 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRV 230 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEE
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh-cceeEE
Confidence 9753211101111 12468999999999999998764221 1122223344556666 655543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.71 E-value=0.0029 Score=57.79 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=74.9
Q ss_pred ccEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHh----------cCCccEEEeccCcC-CCCCCcccEEE
Q 047630 237 IRIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQRL-PFFDNTLDIVH 303 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~L-pf~d~sFDlV~ 303 (392)
.+.||-||.|.|..+..+.+. + ..++.+++|. ...+.+.+ ...+.++.+|+... .-.+++||+|+
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~--~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDG--KVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCH--HHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred cceEEecCCCCcHHHHHHHhcCCcceEEEecCCH--HHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 455599999999999999985 3 4777766654 33332211 12367788875442 23467899999
Q ss_pred EcccccccCCchh--HHHHHHHHHHcccCCcEEEEEeec-ccccchHHHHHHHHHHcCCeEE
Q 047630 304 SMHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLDHFF-CVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 304 s~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~~~~-~~~~~l~~~l~~ll~~aGf~~i 362 (392)
.-..- ....... -+++++.+.+.|+|||+++...-. ....+....+.+.++++ |..+
T Consensus 154 ~D~~~-p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F~~v 213 (274)
T d1iy9a_ 154 VDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPIT 213 (274)
T ss_dssp ESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred EcCCC-CCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh-cCce
Confidence 76321 1111111 236899999999999999875321 11222334466667776 4443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.65 E-value=0.0019 Score=60.17 Aligned_cols=126 Identities=11% Similarity=0.084 Sum_probs=73.1
Q ss_pred cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc----------CCccEEEeccCcC-CCCCCcccEE
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQRL-PFFDNTLDIV 302 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~L-pf~d~sFDlV 302 (392)
..+.||-||.|.|..+..+.+.. ..++.+++|. ...+.+.+- ..+.++.+|+... .-.+++||+|
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~--~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDE--MVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCH--HHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccH--HHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 34556999999999999999854 4677755443 433322221 1256677774432 2246789999
Q ss_pred EEcccccccCCch--hHHHHHHHHHHcccCCcEEEEEeec-ccccchHHHHHHHHHHcCCeEEEEE
Q 047630 303 HSMHVLSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDHFF-CVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 303 ~s~~~l~~~~~~~--~l~~~L~el~RvLKPGG~lii~~~~-~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+.-..- ...+.. .-.++++.+.+.|+|||+++...-. ....+....+.+.+++. |..+..-
T Consensus 184 I~D~~d-p~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v~~y 247 (312)
T d2b2ca1 184 ITDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYA 247 (312)
T ss_dssp EECCC--------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEE
T ss_pred EEcCCC-CCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc-cceEEEe
Confidence 975322 111111 1246899999999999999886421 11222233355556665 6665544
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.0019 Score=59.34 Aligned_cols=66 Identities=12% Similarity=0.236 Sum_probs=47.3
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc-------CCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR-------GVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-------g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
.|||||+|.|.++..|++.+..++++.+|. .......++ +.+.++.+|+...+++ .++.|+++..+
T Consensus 24 ~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~--~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~--~~~~vV~NLPY 96 (278)
T d1zq9a1 24 VVLEVGPGTGNMTVKLLEKAKKVVACELDP--RLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLPY 96 (278)
T ss_dssp EEEEECCTTSTTHHHHHHHSSEEEEEESCH--HHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECCG
T ss_pred EEEEECCCchHHHHHHHhcCCcEEEEEEcc--chhHHHHHHHhhhccccchhhhHHHHhhhhhh--hhhhhhcchHH
Confidence 349999999999999999999999966553 444433221 2367888888777654 35678877655
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.0012 Score=59.80 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=43.4
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCC
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPF 294 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf 294 (392)
...++..| ||||||+|.++..|++.+..+++++ ++....+...++ ..+.++.+|+..+++
T Consensus 18 ~~~~~d~v---lEIGpG~G~LT~~Ll~~~~~v~aiE--iD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 18 NPQKGQAM---VEIGPGLAALTEPVGERLDQLTVIE--LDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CCCTTCCE---EEECCTTTTTHHHHHTTCSCEEEEC--CCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred CCCCCCEE---EEECCCchHHHHHHHccCCceEEEE--eccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 34445555 9999999999999999999999955 444555544443 236788888877654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.039 Score=50.32 Aligned_cols=131 Identities=8% Similarity=-0.043 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH---cCCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME---RNITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~---~g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~ 291 (392)
...+...++...++..| ||+++|.|.-+.++++ ....++++|++ ..... .+.+.|. +.+...|...
T Consensus 82 sS~l~~~~L~~~~g~~v---LD~cAapGgKt~~la~l~~~~~~i~a~d~~--~~R~~~l~~~l~r~g~~~~~~~~~d~~~ 156 (293)
T d2b9ea1 82 ASCLPAMLLDPPPGSHV---IDACAAPGNKTSHLAALLKNQGKIFAFDLD--AKRLASMATLLARAGVSCCELAEEDFLA 156 (293)
T ss_dssp GGGHHHHHHCCCTTCEE---EESSCTTCHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred cccccccccCCCccceE---EecccchhhHHHHHHHHhcCCceEeeecCC--HHHHHHHHHHHHhcCccceeeeehhhhh
Confidence 34455566666666666 9999999998888776 34577785544 33333 3333343 4566666665
Q ss_pred CCCC---CCcccEEEEccc------ccc-----c--C-Cch---h----HHHHHHHHHHcccCCcEEEEEeecccccchH
Q 047630 292 LPFF---DNTLDIVHSMHV------LSN-----W--I-PTT---L----LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLE 347 (392)
Q Consensus 292 Lpf~---d~sFDlV~s~~~------l~~-----~--~-~~~---~----l~~~L~el~RvLKPGG~lii~~~~~~~~~l~ 347 (392)
+... .+.||.|+.--. +.. | . ... . ...++..+. .|+|||.++.+..--..++-+
T Consensus 157 ~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe 235 (293)
T d2b9ea1 157 VSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENE 235 (293)
T ss_dssp SCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTH
T ss_pred hcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhH
Confidence 5432 256999986411 100 0 0 110 1 123444555 479999998877544445555
Q ss_pred HHHHHHHHHc
Q 047630 348 DVYVPLIESV 357 (392)
Q Consensus 348 ~~l~~ll~~a 357 (392)
+.+...+++.
T Consensus 236 ~vV~~~L~~~ 245 (293)
T d2b9ea1 236 DVVRDALQQN 245 (293)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHhC
Confidence 6677777764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.0089 Score=49.81 Aligned_cols=98 Identities=8% Similarity=-0.001 Sum_probs=60.7
Q ss_pred hhCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccC-c-CCCCCCcccEEEEc
Q 047630 230 ATKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQ-R-LPFFDNTLDIVHSM 305 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~-~-Lpf~d~sFDlV~s~ 305 (392)
.+.+++++ |-+|+| .|.++..+++ .|.++++++.+ ....+.+.+-|.-.++..... . ..-..+.||+|+..
T Consensus 24 ~~~~g~~v---lI~GaG~vG~~a~q~ak~~G~~vi~~~~~--~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 24 GCGPGKKV---GIVGLGGIGSMGTLISKAMGAETYVISRS--SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp TCSTTCEE---EEECCSHHHHHHHHHHHHHTCEEEEEESS--STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CcCCCCEE---EEECCCCcchhHHHHhhhccccccccccc--hhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 45666666 889998 5778888776 79999885543 456666767674333322111 1 11134579988864
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
-.-.+- . .+....+.|+|||++++...
T Consensus 99 ~~~~~~---~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 99 ASSLTD---I----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CSCSTT---C----CTTTGGGGEEEEEEEEECCC
T ss_pred ecCCcc---c----hHHHHHHHhhccceEEEecc
Confidence 322111 0 23557789999999977643
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.06 Score=52.97 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc----C----------------CEEEEEecCCCchhHHH----H
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER----N----------------ITIVTTSMNLNGPFNNF----I 276 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~----g----------------~~vvg~~iD~~a~~~~~----a 276 (392)
+-.++-+++...++.+| +|-.||+|.|.....+. . ..++|.++|. ..... +
T Consensus 152 Iv~~mv~ll~~~~~~~i---~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~--~~~~la~~nl 226 (524)
T d2ar0a1 152 LIKTIIHLLKPQPREVV---QDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP--GTRRLALMNC 226 (524)
T ss_dssp HHHHHHHHHCCCTTCCE---EETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH--HHHHHHHHHH
T ss_pred hhHhhhhcccCccchhh---cchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCH--HHHHHHHHHH
Confidence 44444455544444455 99999999998765541 1 1467755443 22221 1
Q ss_pred HhcCC-------ccEEEeccCcCC-CCCCcccEEEEcccccccC------------CchhHHHHHHHHHHcccCCcEEEE
Q 047630 277 ASRGV-------VPLYISISQRLP-FFDNTLDIVHSMHVLSNWI------------PTTLLHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 277 a~rg~-------i~~~~~d~~~Lp-f~d~sFDlV~s~~~l~~~~------------~~~~l~~~L~el~RvLKPGG~lii 336 (392)
.-.+. ..+..++...-+ .....||+|+++-.+..-. .... -.++..+.+.||+||++.+
T Consensus 227 ~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~gGr~ai 305 (524)
T d2ar0a1 227 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHPGGRAAV 305 (524)
T ss_dssp HTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEEEEEEEE
T ss_pred HhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc-HHHHHHHHHhccccCcEEE
Confidence 12221 112222221111 2346799999996663211 0111 2488999999999999866
Q ss_pred Ee
Q 047630 337 DH 338 (392)
Q Consensus 337 ~~ 338 (392)
..
T Consensus 306 Il 307 (524)
T d2ar0a1 306 VV 307 (524)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.22 E-value=0.046 Score=44.97 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=61.7
Q ss_pred hhCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC----------CCCC
Q 047630 230 ATKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP----------FFDN 297 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp----------f~d~ 297 (392)
.+.+++++ |-+||| .|.++..+++ .|.++++++ .+....+.+.+.+.-..+..+..... ....
T Consensus 23 ~~~~g~~v---lV~G~G~vG~~~~~~ak~~Ga~vi~v~--~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 23 GVQLGTTV---LVIGAGPIGLVSVLAAKAYGAFVVCTA--RSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 97 (170)
T ss_dssp TCCTTCEE---EEECCSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCCCEE---EEEcccccchhhHhhHhhhcccccccc--hHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccccc
Confidence 45666666 888988 4777777776 788998855 43455556666664233322211110 1134
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
.+|+|+-.-.- ...+..+.+.|||||.+++......
T Consensus 98 g~D~vid~~g~---------~~~~~~a~~~~~~~G~iv~~G~~~~ 133 (170)
T d1e3ja2 98 LPNVTIDCSGN---------EKCITIGINITRTGGTLMLVGMGSQ 133 (170)
T ss_dssp CCSEEEECSCC---------HHHHHHHHHHSCTTCEEEECSCCSS
T ss_pred CCceeeecCCC---------hHHHHHHHHHHhcCCceEEEecCCC
Confidence 58988754321 1367888999999999988765443
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.94 E-value=0.089 Score=49.41 Aligned_cols=54 Identities=20% Similarity=0.069 Sum_probs=39.7
Q ss_pred eccCcCCCCCCcccEEEEcccccccCC------------------------------chhHHHHHHHHHHcccCCcEEEE
Q 047630 287 SISQRLPFFDNTLDIVHSMHVLSNWIP------------------------------TTLLHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 287 ~d~~~Lpf~d~sFDlV~s~~~l~~~~~------------------------------~~~l~~~L~el~RvLKPGG~lii 336 (392)
++...--||+++.|+++++.++|++.. ..++..+|+-=.+-|+|||++++
T Consensus 128 GSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl 207 (359)
T d1m6ex_ 128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred CchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 345444578999999999999965321 12455677777888999999998
Q ss_pred Eeec
Q 047630 337 DHFF 340 (392)
Q Consensus 337 ~~~~ 340 (392)
..+.
T Consensus 208 ~~~g 211 (359)
T d1m6ex_ 208 TILG 211 (359)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.61 E-value=0.043 Score=45.92 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=63.4
Q ss_pred HHhhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CC-CCCc
Q 047630 228 VLATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PF-FDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf-~d~s 298 (392)
..++.++.+| |=+|||. |..+..+++ .|. .|++ +|.+....+.+.+-|...++....+.+ .. ....
T Consensus 22 ~a~~~~g~~V---lI~GaG~vGl~~~q~ak~~Ga~~Vi~--~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 22 LADIEMGSSV---VVIGIGAVGLMGIAGAKLRGAGRIIG--VGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp HTTCCTTCCE---EEECCSHHHHHHHHHHHTTTCSCEEE--ECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred HhCCCCCCEE---EEEcCCcchhhhhhhhhccccccccc--ccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccC
Confidence 3456777777 7789986 788888888 565 5777 555455566666667433332221111 01 2345
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+|+|+-.-.- . ..+.+..+.+||||.+++..+..
T Consensus 97 ~D~vid~~g~------~---~~~~~a~~~~~~~G~iv~~G~~~ 130 (174)
T d1jqba2 97 VDRVIMAGGG------S---ETLSQAVKMVKPGGIISNINYHG 130 (174)
T ss_dssp EEEEEECSSC------T---THHHHHHHHEEEEEEEEECCCCC
T ss_pred cceEEEccCC------H---HHHHHHHHHHhcCCEEEEEeecC
Confidence 9988765332 1 25688889999999998876543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.49 E-value=0.035 Score=46.45 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=59.5
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC--------C-CCCC
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL--------P-FFDN 297 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L--------p-f~d~ 297 (392)
++.++++| |-+|+|. |.++..+++ .|+ +|++++ .+....+.+.+-|.-.++....... . ....
T Consensus 25 ~~~~G~~V---lV~GaG~iG~~~~~~ak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 25 ESFAGKTV---VIQGAGPLGLFGVVIARSLGAENVIVIA--GSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp SCCBTCEE---EEECCSHHHHHHHHHHHHTTBSEEEEEE--SCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCCCEE---EEECCCccchhheecccccccccccccc--cccccccccccccceEEEeccccchHHHHHHHHHhhCCC
Confidence 34555666 8899884 777777777 676 788855 4345556666666422322211110 0 1234
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.+|+|+-.-.- . ..++...+.|++||++++.....
T Consensus 100 g~Dvvid~vG~------~---~~~~~a~~~l~~~G~iv~~G~~~ 134 (182)
T d1vj0a2 100 GADFILEATGD------S---RALLEGSELLRRGGFYSVAGVAV 134 (182)
T ss_dssp CEEEEEECSSC------T---THHHHHHHHEEEEEEEEECCCCS
T ss_pred CceEEeecCCc------h---hHHHHHHHHhcCCCEEEEEeecC
Confidence 58998854321 1 25688889999999998775443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.99 E-value=0.032 Score=47.75 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=64.8
Q ss_pred HHhhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEec-cCcC-----C-CCCC
Q 047630 228 VLATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISI-SQRL-----P-FFDN 297 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d-~~~L-----p-f~d~ 297 (392)
..++.+++.| |-+|||. |..+..+++ .+. .++++| .+....+.+.+.|. ...... ..++ . ....
T Consensus 20 ~a~v~~G~tV---lV~GaG~vGl~a~~~ak~~ga~~Vi~~d--~~~~rl~~a~~~Ga-~~~~~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 20 TAGVGPGSTV---YVAGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp HTTCCTTCEE---EEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSS
T ss_pred HhCCCCCCEE---EEECcCHHHHHHHHHHHhhcccceeeec--ccchhhHhhhhccc-cEEEeCCCcCHHHHHHHHhCCC
Confidence 3457777766 9999998 667777776 555 677744 44456667777774 332221 1111 0 1234
Q ss_pred cccEEEEcccc------cccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 298 TLDIVHSMHVL------SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 298 sFDlV~s~~~l------~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.+|+++-.-.. +...........++++.+++||||.+.+.-.+.
T Consensus 94 g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~ 143 (195)
T d1kola2 94 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV 143 (195)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred CcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence 58988854321 111111122358999999999999998886543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.30 E-value=0.083 Score=43.20 Aligned_cols=97 Identities=9% Similarity=0.011 Sum_probs=57.8
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCcccE
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLDI 301 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFDl 301 (392)
.++.+++++ |=+|+|. |..+..+++ .|.++++++ .+....+.+.+-|...++....++. ....+.+|.
T Consensus 23 ~~~~~g~~V---lV~GaG~vG~~~~~~ak~~G~~Vi~~~--~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 23 TNARPGQWV---AISGIGGLGHVAVQYARAMGLHVAAID--IDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp HTCCTTCEE---EEECCSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred hCCCCCCEE---EEeeccccHHHHHHHHHHcCCccceec--chhhHHHhhhccCccccccccchhHHHHHHHhhcCCccc
Confidence 456666666 7789876 666677766 688888854 4345556666667434443222211 011233344
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
|.+... ...+....+.|+|||++++.-..
T Consensus 98 i~~~~~----------~~~~~~~~~~l~~~G~iv~~G~~ 126 (166)
T d1llua2 98 LVTAVS----------NSAFGQAIGMARRGGTIALVGLP 126 (166)
T ss_dssp EECCSC----------HHHHHHHHTTEEEEEEEEECCCC
T ss_pred cccccc----------chHHHHHHHHhcCCcEEEEEEec
Confidence 443222 13578888999999999876543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.041 Score=45.67 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=59.2
Q ss_pred hhCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC------CCCCCccc
Q 047630 230 ATKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL------PFFDNTLD 300 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L------pf~d~sFD 300 (392)
++.++.+| |-.|+ |.|..+..+++ .|.++++++ -+....+.+.+.|.-.++.....++ ....+.+|
T Consensus 25 ~~~~g~~V---lV~Ga~G~vG~~aiq~a~~~G~~vi~~~--~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 25 CVKAGESV---LVHGASGGVGLAACQIARAYGLKILGTA--GTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp CCCTTCEE---EEETCSSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CCCCCCEE---EEEeccccccccccccccccCccccccc--ccccccccccccCcccccccccccHHHHhhhhhccCCce
Confidence 34565555 99986 46778888877 689988855 2244455666667433332211111 11345699
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+|+..-. ...+.+..++|+|||.++...
T Consensus 100 ~v~d~~g----------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 100 IIIEMLA----------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEESCH----------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEeeccc----------HHHHHHHHhccCCCCEEEEEe
Confidence 9987432 135788889999999998753
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.84 E-value=0.14 Score=44.95 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=55.3
Q ss_pred EEEeccCcC--CCCCCcccEEEEccccc----ccCCc----hhHHHHHHHHHHcccCCcEEEEEeecc-----cccchHH
Q 047630 284 LYISISQRL--PFFDNTLDIVHSMHVLS----NWIPT----TLLHFLMFDIYRVLRPGGLFWLDHFFC-----VGAQLED 348 (392)
Q Consensus 284 ~~~~d~~~L--pf~d~sFDlV~s~~~l~----~~~~~----~~l~~~L~el~RvLKPGG~lii~~~~~-----~~~~l~~ 348 (392)
++++|+..+ .++++++|+|+..-... .+... +.+...+.++.|+|||||.+++..... .......
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~ 86 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLIS 86 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHH
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhh
Confidence 456664432 45689999999985432 11111 235678899999999999998764221 1223345
Q ss_pred HHHHHHHHcCCeEEEEEEeec
Q 047630 349 VYVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 349 ~l~~ll~~aGf~~i~w~~~~k 369 (392)
.+..+++..||....+....+
T Consensus 87 ~~~~~~~~~~~~~~~~i~~~k 107 (279)
T d1eg2a_ 87 IISHMRQNSKMLLANLIIWNY 107 (279)
T ss_dssp HHHHHHHHCCCEEEEEEEEEC
T ss_pred HHHHHHhccCceeeeeeeecc
Confidence 567788899998766554443
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.18 Score=41.30 Aligned_cols=100 Identities=11% Similarity=0.000 Sum_probs=61.6
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCCCc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFDNT 298 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d~s 298 (392)
.+.+++.+ |=+|+|. |..+..+++ .|. .++++| .+....+.+.+-|.-.++..+.+... -....
T Consensus 23 ~~~~gd~V---lI~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 23 GVTLGHKV---LVCGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TCCTTCEE---EEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CCCCCCEE---EEECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCcccccccccccccccccccccCCCC
Confidence 45566666 8889986 456666666 677 688744 54455566666674223322222110 01346
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG 343 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~ 343 (392)
+|+|+-.-.- +..++...+.+|+||++++.......
T Consensus 98 ~Dvvid~~G~---------~~~~~~a~~~~~~gG~iv~~G~~~~~ 133 (171)
T d1pl8a2 98 PEVTIECTGA---------EASIQAGIYATRSGGTLVLVGLGSEM 133 (171)
T ss_dssp CSEEEECSCC---------HHHHHHHHHHSCTTCEEEECSCCCSC
T ss_pred ceEEEeccCC---------chhHHHHHHHhcCCCEEEEEecCCCC
Confidence 8988864332 23678899999999999888765543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.68 E-value=0.055 Score=51.18 Aligned_cols=90 Identities=8% Similarity=-0.001 Sum_probs=55.6
Q ss_pred EEEEcCCcchHHHHHHH-cCC-EEEEEecCCCchhHHHH----HhcCC-----------------ccEEEeccCcCCC-C
Q 047630 240 GLDIGGGVATFAVRMME-RNI-TIVTTSMNLNGPFNNFI----ASRGV-----------------VPLYISISQRLPF-F 295 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~-~g~-~vvg~~iD~~a~~~~~a----a~rg~-----------------i~~~~~d~~~Lpf-~ 295 (392)
|||..||+|..+.+.+. .+. .|+..|+|. ...+.+ ..++. +.+...|+..+-. .
T Consensus 49 vLD~~sasG~rsiRya~E~~~~~V~~nDis~--~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~ 126 (375)
T d2dula1 49 VLDALSATGIRGIRFALETPAEEVWLNDISE--DAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER 126 (375)
T ss_dssp EEESSCTTSHHHHHHHHHSSCSEEEEEESCH--HHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS
T ss_pred EEEcCCCccHHHHHHHHhCCCCEEEEecCCH--HHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhh
Confidence 49999999999997655 444 677755543 333322 22221 1222333222211 3
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
...||+|..-- +..+. .+|..+.|.++.||+|.++.
T Consensus 127 ~~~fDvIDiDP----fGs~~---pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 127 HRYFHFIDLDP----FGSPM---EFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp TTCEEEEEECC----SSCCH---HHHHHHHHHEEEEEEEEEEE
T ss_pred cCcCCcccCCC----CCCcH---HHHHHHHHHhccCCEEEEEe
Confidence 45799888653 23333 48999999999999998885
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=91.62 E-value=2.9 Score=36.51 Aligned_cols=141 Identities=9% Similarity=0.117 Sum_probs=80.2
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC-CCcccEEEEcccccccC------
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF-DNTLDIVHSMHVLSNWI------ 312 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~------ 312 (392)
|||+=||.|.+..-+.+.|.+++. .+|++....+....+---..+.+|+..+... -...|+++....-..+.
T Consensus 3 ~~~lF~G~Gg~~~gl~~aG~~~~~-a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~~~ 81 (324)
T d1dcta_ 3 LISLFSGAGGLDLGFQKAGFRIIC-ANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGSLR 81 (324)
T ss_dssp EEEESCSSCHHHHHHHHHTCEEEE-EEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSCCC
T ss_pred EEEeCcCcCHHHHHHHHCCCEEEE-EEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeecccccccccccccc
Confidence 599999999999999888988762 3445333333333332235677887776432 23589999865443321
Q ss_pred -CchhHHHHH---HHHHHcccCCcEEEEEeecc----cccchHHHHHHHHHHcCCeEEEEEEeeccCCC--CcccceeeE
Q 047630 313 -PTTLLHFLM---FDIYRVLRPGGLFWLDHFFC----VGAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREMYLS 382 (392)
Q Consensus 313 -~~~~l~~~L---~el~RvLKPGG~lii~~~~~----~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~yls 382 (392)
..+....++ .++.+.+||. ++++..... ......+.+...+++.||. +.|.+....+.| .....+|+.
T Consensus 82 g~~d~r~~l~~~~~~~i~~~~Pk-~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~-v~~~vlna~~~GvPQ~R~R~fiv 159 (324)
T d1dcta_ 82 GIDDPRGKLFYEYIRILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD-VHIILLNANDYGVAQDRKRVFYI 159 (324)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCCS-EEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEE-EEEEEEEGGGGTCSBCCEEEEEE
T ss_pred cccccccchHHHHHHHHHhhCCc-eeeccccccccccccchhhHHHHhHHhhCCCc-cceeeeecccccCchhhceeeEe
Confidence 011111233 3455666784 555555421 1122234456667778986 556666655553 344556664
Q ss_pred E
Q 047630 383 A 383 (392)
Q Consensus 383 a 383 (392)
+
T Consensus 160 ~ 160 (324)
T d1dcta_ 160 G 160 (324)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.58 E-value=0.26 Score=42.38 Aligned_cols=83 Identities=8% Similarity=0.060 Sum_probs=52.6
Q ss_pred cEEEeccCcC--CCCCCcccEEEEccccc----ccCC---c----hhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 283 PLYISISQRL--PFFDNTLDIVHSMHVLS----NWIP---T----TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 283 ~~~~~d~~~L--pf~d~sFDlV~s~~~l~----~~~~---~----~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
.++.+|+..+ .++++++|+|++.-... .+.. . +.+...+.+++|+|+|||.+++.... .....
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~----~~~~~ 81 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP----FNCAF 81 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH----HHHHH
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc----hhhhh
Confidence 4677775442 34689999999985432 1111 1 12456889999999999988765321 12233
Q ss_pred HHHHHHHcCCeEEEEEEeec
Q 047630 350 YVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 350 l~~ll~~aGf~~i~w~~~~k 369 (392)
+...+.+.||....+....+
T Consensus 82 ~~~~~~~~g~~~~~~iiW~k 101 (256)
T d1g60a_ 82 ICQYLVSKGMIFQNWITWDK 101 (256)
T ss_dssp HHHHHHHTTCEEEEEEEECC
T ss_pred hhhhhhcccceeeeeeEeee
Confidence 56678889998765554433
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.52 E-value=0.14 Score=41.97 Aligned_cols=97 Identities=10% Similarity=0.059 Sum_probs=60.3
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-CCCCCcccEEEEc
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-PFFDNTLDIVHSM 305 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-pf~d~sFDlV~s~ 305 (392)
.++.++++| |=+|+|. |.++..+++ .|..+++++ .+....+.+.+-|...++....... ....+.+|+|+-.
T Consensus 26 ~~~~~G~~V---lI~GaG~vG~~a~qlak~~Ga~~i~~~--~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~ 100 (168)
T d1uufa2 26 WQAGPGKKV---GVVGIGGLGHMGIKLAHAMGAHVVAFT--TSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNT 100 (168)
T ss_dssp TTCCTTCEE---EEECCSHHHHHHHHHHHHTTCEEEEEE--SSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEEC
T ss_pred hCCCCCCEE---EEeccchHHHHHHHHhhcccccchhhc--cchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeee
Confidence 346676666 7788875 777888877 788888755 3345556666667433333221111 1123569988865
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
-.-.. .+....+.|++||++++.-.
T Consensus 101 ~g~~~---------~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 101 VAAPH---------NLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp CSSCC---------CHHHHHTTEEEEEEEEECCC
T ss_pred eecch---------hHHHHHHHHhcCCEEEEecc
Confidence 33211 35777899999999987654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.39 E-value=0.22 Score=40.34 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=56.9
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCc-C-----CCCCCccc
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR-L-----PFFDNTLD 300 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~-L-----pf~d~sFD 300 (392)
.++.+++++ |=.|+|. |..+..+++ .|..++++ +.+......+.+.|. ......... . ....+.+|
T Consensus 23 ~~~~~g~~v---lv~G~G~iG~~a~~~a~~~g~~v~~~--~~~~~r~~~~k~~Ga-~~~~~~~~~~~~~~~~~~~~~~~~ 96 (168)
T d1rjwa2 23 TGAKPGEWV---AIYGIGGLGHVAVQYAKAMGLNVVAV--DIGDEKLELAKELGA-DLVVNPLKEDAAKFMKEKVGGVHA 96 (168)
T ss_dssp HTCCTTCEE---EEECCSTTHHHHHHHHHHTTCEEEEE--CSCHHHHHHHHHTTC-SEEECTTTSCHHHHHHHHHSSEEE
T ss_pred hCCCCCCEE---EEeecccchhhhhHHHhcCCCeEecc--CCCHHHhhhhhhcCc-ceecccccchhhhhcccccCCCce
Confidence 346666666 7788876 555666665 67888874 444455556666664 333332221 1 01233444
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.|.+... ...+....+.|+|||.+++.....
T Consensus 97 ~v~~~~~----------~~~~~~a~~~l~~~G~i~~~g~~~ 127 (168)
T d1rjwa2 97 AVVTAVS----------KPAFQSAYNSIRRGGACVLVGLPP 127 (168)
T ss_dssp EEESSCC----------HHHHHHHHHHEEEEEEEEECCCCS
T ss_pred EEeecCC----------HHHHHHHHHHhccCCceEeccccc
Confidence 4443211 136789999999999998875433
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=91.25 E-value=1.7 Score=38.61 Aligned_cols=140 Identities=13% Similarity=0.070 Sum_probs=80.4
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC-CCcccEEEEccccccc-------
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF-DNTLDIVHSMHVLSNW------- 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~------- 311 (392)
|||+=||-|.+...|.+.|.++++ .+|++....+....+. -...++|+..+... -..+|+++....-..+
T Consensus 14 v~~lFsG~Gg~~~gl~~aG~~~v~-a~e~d~~a~~~~~~N~-~~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ag~~~ 91 (327)
T d2c7pa1 14 FIDLFAGLGGFRLALESCGAECVY-SNEWDKYAQEVYEMNF-GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQK 91 (327)
T ss_dssp EEEETCTTTHHHHHHHHTTCEEEE-EECCCHHHHHHHHHHH-SCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSCCC
T ss_pred EEEECccccHHHHHHHHCCCeEEE-EEeCCHHHHHHHHHHC-CCCCcCchhcCchhhcceeeeeecccccchhhhhhhhc
Confidence 499999999999999999988764 4555444433222221 12234666655322 2358999976543221
Q ss_pred --C-CchhHHHHHHHHHHcccCCcEEEEEeecc----cccchHHHHHHHHHHcCCeEEEEEEeeccCCC--CcccceeeE
Q 047630 312 --I-PTTLLHFLMFDIYRVLRPGGLFWLDHFFC----VGAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREMYLS 382 (392)
Q Consensus 312 --~-~~~~l~~~L~el~RvLKPGG~lii~~~~~----~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~yls 382 (392)
. ++..+-..+.++.+.+||. +|++..... ......+.+...+++.||.. .|.+....+.| .....+|+.
T Consensus 92 g~~d~r~~l~~~~~~~i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~-~~~vl~a~~~GvPQ~R~R~fiv 169 (327)
T d2c7pa1 92 GFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSF-HAKVLNALDYGIPQKRERIYMI 169 (327)
T ss_dssp GGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCC-EEEEEEGGGGTCSBCCEEEEEE
T ss_pred CCcccchhHHHHHHHHHhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCcc-eeeEecHHHcCCCchhhhheee
Confidence 1 1222323344455667884 566665422 22333456788899999975 45556655554 344456654
Q ss_pred E
Q 047630 383 A 383 (392)
Q Consensus 383 a 383 (392)
+
T Consensus 170 g 170 (327)
T d2c7pa1 170 C 170 (327)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.20 E-value=0.5 Score=39.04 Aligned_cols=99 Identities=12% Similarity=-0.017 Sum_probs=62.5
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcCC-------CCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP-------FFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp-------f~d~sF 299 (392)
.+.+++.| |=+|||. |..+..+++ .|. .++. .|.+....+.+.+-|...++.....+-. ...+.+
T Consensus 25 ~v~~G~~V---lV~G~G~iGl~a~~~ak~~Ga~~Vi~--~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (174)
T d1e3ia2 25 KVTPGSTC---AVFGLGCVGLSAIIGCKIAGASRIIA--IDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 99 (174)
T ss_dssp CCCTTCEE---EEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCCCCCEE---EEECCChHHHHHHHHHHHhCCceeee--eccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCC
Confidence 35566666 8899998 888888887 576 5666 4554566666777775334332211110 123568
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEeeccc
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDHFFCV 342 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~~~~~ 342 (392)
|+|+-.-.- +..+.+..+.+++| |.+++.-....
T Consensus 100 d~vie~~G~---------~~~~~~a~~~~~~g~G~~v~vG~~~~ 134 (174)
T d1e3ia2 100 DYSLDCAGT---------AQTLKAAVDCTVLGWGSCTVVGAKVD 134 (174)
T ss_dssp SEEEESSCC---------HHHHHHHHHTBCTTTCEEEECCCSSS
T ss_pred cEEEEeccc---------chHHHHHHHHhhcCCeEEEecCCCCC
Confidence 988754321 24789999999997 99988765443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.97 E-value=0.19 Score=41.55 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=58.2
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCcccE
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLDI 301 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFDl 301 (392)
++.++.+| |=+|||. |..+..+++ .|.. ++++ |.+....+.+.+-|...++....++. .+.++.||+
T Consensus 25 ~~~~g~~V---lI~G~G~iG~~~~~~ak~~g~~~v~~~--~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 25 KVTPASSF---VTWGAGAVGLSALLAAKVCGASIIIAV--DIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp CCCTTCEE---EEESCSHHHHHHHHHHHHHTCSEEEEE--ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCCCEE---EEeCCCHHHhhhhhcccccccceeeee--ccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 35566666 7789875 445666665 5664 4443 34345556666667544543332221 123457998
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|+-.-.- ...+++..+++||+|.+++...
T Consensus 100 vid~~G~---------~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 100 ALESTGS---------PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEECSCC---------HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEcCCc---------HHHHHHHHhcccCceEEEEEee
Confidence 8854321 1367889999999999987654
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=1.2 Score=39.72 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=78.9
Q ss_pred EEEEcCCcchHHHHHHHcCC--EE-EEEecCCCchhHHHHHhc-CCccEEEeccCcCCC---CCCcccEEEEcccccccC
Q 047630 240 GLDIGGGVATFAVRMMERNI--TI-VTTSMNLNGPFNNFIASR-GVVPLYISISQRLPF---FDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~--~v-vg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf---~d~sFDlV~s~~~l~~~~ 312 (392)
|+|+-||.|.+...|.+.|. ++ .+ +|++....+....+ ....++.+|+..+.. +...+|+++....-..+.
T Consensus 5 v~~lF~G~Gg~~~gl~~aG~~~~~~~a--~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~fS 82 (343)
T d1g55a_ 5 VLELYSGVGGMHHALRESCIPAQVVAA--IDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEETCTTCHHHHHHHHHTCSEEEEEE--ECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred EEEcCcCccHHHHHHHHcCCCCeEEEE--EECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeeccccccc
Confidence 49999999999888877775 43 34 45533333322222 235677777776642 223589998765443321
Q ss_pred C-------chhHHHHHHHHHHcc-----cCCcEEEEEeeccc-ccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Cccc
Q 047630 313 P-------TTLLHFLMFDIYRVL-----RPGGLFWLDHFFCV-GAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELR 377 (392)
Q Consensus 313 ~-------~~~l~~~L~el~RvL-----KPGG~lii~~~~~~-~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~ 377 (392)
. .+....++.++.|++ ||- +|++.....- .....+.+.+.|+++||.. .|.+....+.| +...
T Consensus 83 ~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v-~~~vlna~dyGvPQ~R~ 160 (343)
T d1g55a_ 83 RIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQY-QEFLLSPTSLGIPNSRL 160 (343)
T ss_dssp -------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEE-EEEEECGGGGTCSCCCC
T ss_pred ccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCcccchhhHHHHhhhhcccccc-ceeeeeccccCCcccce
Confidence 1 111223555556654 464 5666665332 1223456888899999874 67777665554 3455
Q ss_pred ceeeEE
Q 047630 378 EMYLSA 383 (392)
Q Consensus 378 e~ylsa 383 (392)
.+|+.+
T Consensus 161 Rvfivg 166 (343)
T d1g55a_ 161 RYFLIA 166 (343)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 666644
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=89.36 E-value=1.3 Score=35.51 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=56.1
Q ss_pred EEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
.=||+|. +.++..|.+.|.+|+++ |.+....+.+.+.+.+.....+.+.+ ...|+|+..- +....+
T Consensus 4 ~iIG~G~mG~~lA~~l~~~g~~V~~~--d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIilav------p~~~~~ 71 (165)
T d2f1ka2 4 GVVGLGLIGASLAGDLRRRGHYLIGV--SRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLCT------PIQLIL 71 (165)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEE--CSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEECS------CHHHHH
T ss_pred EEEeecHHHHHHHHHHHHCCCEEEEE--ECCchHHHHHHHhhccceeeeecccc----cccccccccC------cHhhhh
Confidence 5578874 45778888899999984 55445556667777554444444433 3568887532 335667
Q ss_pred HHHHHHHHcccCCcEEE
Q 047630 319 FLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 319 ~~L~el~RvLKPGG~li 335 (392)
.+++++...|+++-+++
T Consensus 72 ~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 72 PTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp HHHHHHGGGSCTTCEEE
T ss_pred hhhhhhhhhccccccee
Confidence 89999999988888664
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=89.15 E-value=0.31 Score=43.24 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=53.4
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH-------HHHhcC--------CccEEEec
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN-------FIASRG--------VVPLYISI 288 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~-------~aa~rg--------~i~~~~~d 288 (392)
.+.+.+++..+.. .+|||.-||.|..+..++..|.+|++++-+ ..... .+.... .++++.+|
T Consensus 77 ~l~kA~gl~~~~~-~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~--p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 77 AVAKAVGIKGDYL-PDVVDATAGLGRDAFVLASVGCRVRMLERN--PVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp HHHHHTTCBTTBC-CCEEETTCTTCHHHHHHHHHTCCEEEEECC--HHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhcCCCCCC-CEEEECCCcccHHHHHHHhCCCEEEEEccC--HHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 4444555554332 245999999999999999999999995533 22221 111111 26788888
Q ss_pred cCc-CCCCCCcccEEEEcccccc
Q 047630 289 SQR-LPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 289 ~~~-Lpf~d~sFDlV~s~~~l~~ 310 (392)
... +.-....||+|+.--.+.+
T Consensus 154 s~~~L~~~~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhccCCCCCEEEECCCCcc
Confidence 544 3334567999998766643
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.02 E-value=0.22 Score=40.95 Aligned_cols=93 Identities=22% Similarity=0.127 Sum_probs=56.3
Q ss_pred hhCCCCcccEEEEEc--CCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC------CCCCccc
Q 047630 230 ATKKPGTIRIGLDIG--GGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP------FFDNTLD 300 (392)
Q Consensus 230 ~l~~~~~ir~VLDIG--CGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp------f~d~sFD 300 (392)
.+.++++| |=.| .|.|.++..+++ .|..+++++- +....+.+.+.|.-..+.....++. .....||
T Consensus 22 ~~~~g~~V---lI~ga~g~vG~~~iqla~~~g~~vi~~~~--~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 22 RLSPGERV---LIHSATGGVGMAAVSIAKMIGARIYTTAG--SDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp CCCTTCEE---EETTTTSHHHHHHHHHHHHHTCEEEEEES--SHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CCCCCCEE---EEECCCCCcccccchhhccccccceeeec--ccccccccccccccccccCCccCHHHHHHHHhCCCCEE
Confidence 34555555 7666 345778888887 6888887542 2344455666664332222222110 1345699
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+|+..-.- ..+.++.++|+++|+++..
T Consensus 97 ~v~d~~g~----------~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 97 VVLNSLAG----------EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEECCCT----------HHHHHHHHTEEEEEEEEEC
T ss_pred EEEecccc----------hHHHHHHHHhcCCCEEEEE
Confidence 99975431 2567888999999999765
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.56 E-value=0.31 Score=39.92 Aligned_cols=94 Identities=12% Similarity=-0.036 Sum_probs=58.9
Q ss_pred hhCCCCcccEEEEEcCC--cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC------CCCCccc
Q 047630 230 ATKKPGTIRIGLDIGGG--VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP------FFDNTLD 300 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG--tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp------f~d~sFD 300 (392)
++.+++.| |=.|+| .|.++..+++ .|.+|++++ .+....+.+.+.|.-..+....+++. .....+|
T Consensus 25 ~l~~g~~V---lv~ga~g~vG~~~iqlak~~Ga~Vi~~~--~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 25 EIKPDEQF---LFHAAAGGVGLIACQWAKALGAKLIGTV--GTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 99 (179)
T ss_dssp CCCTTCEE---EESSTTBHHHHHHHHHHHHHTCEEEEEE--SSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCCCCEE---EEEccccccchHHHHHHHHhCCeEeecc--cchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeE
Confidence 34555555 777555 5778888887 689999855 33455666677774333322222210 1345689
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+|+..-.-. .+....+.|+++|.+++..
T Consensus 100 ~v~d~~g~~----------~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 100 VVYDSVGRD----------TWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp EEEECSCGG----------GHHHHHHTEEEEEEEEECC
T ss_pred EEEeCccHH----------HHHHHHHHHhcCCeeeecc
Confidence 888654321 3578889999999986654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.28 E-value=0.38 Score=40.14 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=55.2
Q ss_pred EEEc--CCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEec---cCc-CCCCCCcccEEEEcccccccCC
Q 047630 241 LDIG--GGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISI---SQR-LPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 241 LDIG--CGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d---~~~-Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
|=-| .|.|.++..+++ .|.+|+++.-+ ....+.+.+.|.-..+.-. .+. .....+.+|+|+-.-.-.
T Consensus 36 LI~gaaGGVG~~aiQlak~~Ga~Viat~~s--~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~---- 109 (176)
T d1xa0a2 36 LVTGATGGVGSLAVSMLAKRGYTVEASTGK--AAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR---- 109 (176)
T ss_dssp EESSTTSHHHHHHHHHHHHTTCCEEEEESC--TTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT----
T ss_pred EEEeccchHHHHHHHHHHHcCCceEEecCc--hHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCch----
Confidence 7776 456779999887 79999885532 3555566666642222111 111 122456799888654321
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
.+.+..++|+|||+++..-..
T Consensus 110 ------~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 110 ------TLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp ------THHHHHHTEEEEEEEEECSCC
T ss_pred ------hHHHHHHHhCCCceEEEeecc
Confidence 458899999999999877653
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.43 E-value=1.4 Score=35.31 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=55.4
Q ss_pred EEEEcCCc--chHHHHHHHcCC--EEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 240 GLDIGGGV--ATFAVRMMERNI--TIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 240 VLDIGCGt--G~~a~~La~~g~--~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
|+=||||. |.++..|.+.|. ++++ +|.+....+.+.+.+.+.....+.... .+...|+|+..-. ..
T Consensus 4 I~IIG~G~mG~sla~~L~~~g~~~~I~~--~D~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~dlIila~p------~~ 73 (171)
T d2g5ca2 4 VLIVGVGFMGGSFAKSLRRSGFKGKIYG--YDINPESISKAVDLGIIDEGTTSIAKV--EDFSPDFVMLSSP------VR 73 (171)
T ss_dssp EEEESCSHHHHHHHHHHHHTTCCSEEEE--ECSCHHHHHHHHHTTSCSEEESCGGGG--GGTCCSEEEECSC------HH
T ss_pred EEEEccCHHHHHHHHHHHhcCCCeEEEE--EECChHHHHHHHHhhcchhhhhhhhhh--hccccccccccCC------ch
Confidence 36789986 347778887774 6777 566556666777777654444433332 2335788886433 34
Q ss_pred hHHHHHHHHHHcccCCcEE
Q 047630 316 LLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~l 334 (392)
....++.++...++++-.+
T Consensus 74 ~~~~vl~~l~~~~~~~~ii 92 (171)
T d2g5ca2 74 TFREIAKKLSYILSEDATV 92 (171)
T ss_dssp HHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhhhhccccccccc
Confidence 5567899999999887554
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.20 E-value=0.6 Score=37.82 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=59.0
Q ss_pred hhCCCCcccEEEEEcC-C-cchHHHHHHH-cC-CEEEEEecCCCchhHHHHHhcCCccEEEeccCcC------CCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGG-G-VATFAVRMME-RN-ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL------PFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGC-G-tG~~a~~La~-~g-~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L------pf~d~sF 299 (392)
++.+++++ |=+|| | .|..+..+++ .+ ..|++++ .+....+.+.+.|....+....++. -.....|
T Consensus 24 ~~~~g~~v---lV~G~~G~vG~~~~~~~~~~g~~~V~~~~--~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 24 SLDPTKTL---LVVGAGGGLGTMAVQIAKAVSGATIIGVD--VREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp TCCTTCEE---EEETTTSHHHHHHHHHHHHHTCCEEEEEE--SSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCCCEE---EEEeccccceeeeeecccccccccccccc--cchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccc
Confidence 45566666 88997 3 4566666655 56 4777744 4345555666666423332222211 0123569
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
|+|+....- ...++...+.++|||.+++..+...
T Consensus 99 d~vid~~g~---------~~~~~~a~~~l~~~G~iv~~G~~~~ 132 (170)
T d1jvba2 99 DAVIDLNNS---------EKTLSVYPKALAKQGKYVMVGLFGA 132 (170)
T ss_dssp EEEEESCCC---------HHHHTTGGGGEEEEEEEEECCSSCC
T ss_pred hhhhccccc---------chHHHhhhhhcccCCEEEEeccccC
Confidence 988865432 1366778899999999988765543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=85.76 E-value=1 Score=36.47 Aligned_cols=95 Identities=8% Similarity=0.017 Sum_probs=56.7
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcCC-----CCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP-----FFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp-----f~d~sFDlV 302 (392)
+.++..+ |=+|+|. |..+..+++ .|. .+++++ .+....+.+.+.+...++....+... .....+|+|
T Consensus 30 ~~~g~~v---li~GaG~vG~~~~~~a~~~g~~~vv~~~--~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 30 LYPGAYV---AIVGVGGLGHIAVQLLKVMTPATVIALD--VKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp CCTTCEE---EEECCSHHHHHHHHHHHHHCCCEEEEEE--SSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred cCCCCEE---EEeCCChHHHHHHHHHHhhcCccccccc--chhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEE
Confidence 4555555 8899886 455666665 554 566644 43455556666664344433211110 123458888
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+-.-.- ...+....+.|++||++++.-+
T Consensus 105 id~~g~---------~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 105 MDFVGS---------QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EESSCC---------HHHHHHGGGGEEEEEEEEECCC
T ss_pred EEecCc---------chHHHHHHHHHhCCCEEEEEeC
Confidence 854432 1367888999999999988764
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.52 E-value=0.52 Score=43.08 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=34.2
Q ss_pred EEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHh---cCCccEEEeccCc
Q 047630 239 IGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIAS---RGVVPLYISISQR 291 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~---rg~i~~~~~d~~~ 291 (392)
.|||||.|.|.++..|.+. + ..+++++ ++........+ .+.+.++.+|...
T Consensus 46 ~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE--~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 46 KVLDLYPGVGIQSAIFYNKYCPRQYSLLE--KRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp EEEEESCTTCHHHHHHHHHHCCSEEEEEC--CCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred eEEEECCCCCHHHHHHHhcCCCCEEEEEE--CCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 4599999999999999885 3 3788844 44444443322 2346777777543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.45 E-value=0.88 Score=37.33 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=60.0
Q ss_pred HHHhhCCCCcccEEEEEcCC--cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC------CCCCC
Q 047630 227 EVLATKKPGTIRIGLDIGGG--VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL------PFFDN 297 (392)
Q Consensus 227 ~ll~l~~~~~ir~VLDIGCG--tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L------pf~d~ 297 (392)
+..++.+++.| |=.|+| .|..+..+++ .|.+|++++ -+....+.+.+.|.-..+....+.. -....
T Consensus 23 ~~~~v~~G~~V---lV~ga~ggvG~~aiqlak~~Ga~vi~~~--~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~ 97 (182)
T d1v3va2 23 EVCGVKGGETV---LVSAAAGAVGSVVGQIAKLKGCKVVGAA--GSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPD 97 (182)
T ss_dssp TTTCCCSSCEE---EESSTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTT
T ss_pred HHhCCCCCCEE---EEEeCCCchhHHHHHHHHccCCEEEEeC--CCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcC
Confidence 34445666666 766664 4667888887 789998855 2234455666666433333322211 11335
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+|+|+-.-.- +.+.+..+.|++||.+++.-
T Consensus 98 Gvd~v~D~vG~----------~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 98 GYDCYFDNVGG----------EFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp CEEEEEESSCH----------HHHHHHGGGEEEEEEEEECC
T ss_pred CCceeEEecCc----------hhhhhhhhhccCCCeEEeec
Confidence 58988864321 35789999999999998764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=84.36 E-value=2.7 Score=34.12 Aligned_cols=99 Identities=9% Similarity=-0.099 Sum_probs=58.9
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC-------CCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-------PFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-------pf~d~sF 299 (392)
++++++.+ |=+|||. |..+..+++ .|. .|++ +|.+....+.+.+.|...++.....+. ....+.+
T Consensus 24 ~~~~G~~V---lV~GaGgvGl~a~~~ak~~G~~~Vi~--~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~ 98 (174)
T d1p0fa2 24 KVTPGSTC---AVFGLGGVGFSAIVGCKAAGASRIIG--VGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 98 (174)
T ss_dssp CCCTTCEE---EEECCSHHHHHHHHHHHHHTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCCCCEE---EEECCCchhHHHHHHHHHcCCceeec--cCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCC
Confidence 45666666 8899986 445565665 564 6777 555566777777778544443222211 1123468
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccC-CcEEEEEeeccc
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRP-GGLFWLDHFFCV 342 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKP-GG~lii~~~~~~ 342 (392)
|.|+-.-.. ...+.+..+.+++ +|.+++.-+...
T Consensus 99 d~vid~~g~---------~~~~~~~~~~~~~~~G~~v~vG~~~~ 133 (174)
T d1p0fa2 99 DYAVECAGR---------IETMMNALQSTYCGSGVTVVLGLASP 133 (174)
T ss_dssp SEEEECSCC---------HHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred cEEEEcCCC---------chHHHHHHHHHHHhcCceEEEEEecC
Confidence 888754322 1356667776655 599888765443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.23 E-value=3.3 Score=31.75 Aligned_cols=103 Identities=8% Similarity=-0.006 Sum_probs=57.6
Q ss_pred EEEcCCcchHHHHHH----HcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC----CCCcccEEEEcccccccC
Q 047630 241 LDIGGGVATFAVRMM----ERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF----FDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 241 LDIGCGtG~~a~~La----~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf----~d~sFDlV~s~~~l~~~~ 312 (392)
+=+|+ |.++..++ +.|..++.+|.| .+..+.+.++....++.+|..+..+ .-...|.+++...
T Consensus 4 vI~G~--G~~G~~la~~L~~~g~~v~vid~d--~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~----- 74 (132)
T d1lssa_ 4 IIAGI--GRVGYTLAKSLSEKGHDIVLIDID--KDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTG----- 74 (132)
T ss_dssp EEECC--SHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCS-----
T ss_pred EEECC--CHHHHHHHHHHHHCCCCcceecCC--hhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCC-----
Confidence 45555 55554444 478999995544 4555555555335788888665321 2245788887421
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeE
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~ 361 (392)
.+....+...+.+.+.+.-.+.... .. .+.+.++++|-..
T Consensus 75 -~d~~N~~~~~~~k~~~~~~iI~~~~----~~----~~~~~l~~~G~d~ 114 (132)
T d1lssa_ 75 -KEEVNLMSSLLAKSYGINKTIARIS----EI----EYKDVFERLGVDV 114 (132)
T ss_dssp -CHHHHHHHHHHHHHTTCCCEEEECS----ST----THHHHHHHTTCSE
T ss_pred -cHHHHHHHHHHHHHcCCceEEEEec----CH----HHHHHHHHCCCCE
Confidence 1222235556667777774443221 11 1455778888643
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=83.47 E-value=1.3 Score=32.84 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=43.6
Q ss_pred cEEEEEc-CCcc--hHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 238 RIGLDIG-GGVA--TFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 238 r~VLDIG-CGtG--~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
+.+.=|| ||+| .+|..|.++|..|.|.|... .+......+.| +.+..+..... . ...|+|+.+.++
T Consensus 9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~-~~~~~~L~~~G-i~v~~g~~~~~-i--~~~d~vV~S~AI 77 (96)
T d1p3da1 9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD-GVVTQRLAQAG-AKIYIGHAEEH-I--EGASVVVVSSAI 77 (96)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC-SHHHHHHHHTT-CEEEESCCGGG-G--TTCSEEEECTTS
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC-ChhhhHHHHCC-CeEEECCcccc-C--CCCCEEEECCCc
Confidence 3446666 4555 46788888999999988765 55556667777 46665543322 1 246899888775
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.01 E-value=0.44 Score=39.66 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=55.3
Q ss_pred cEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhc--CCccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 238 RIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASR--GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 238 r~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~r--g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
..|+=||+|. |..++..+. .|..|..+|.+. ...+..... +.+.....+.+.+.-.-...|+|+..-.+..-..
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~--~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a 110 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV--ERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA 110 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH--HHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence 3459999998 566777666 699999966554 333322221 2245555443333222235799998755433112
Q ss_pred chhHHHHHHHHHHcccCCcEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~li 335 (392)
+.- +=+++.+.+|||..++
T Consensus 111 P~l---It~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 111 PIL---VPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCC---BCHHHHTTSCTTCEEE
T ss_pred Cee---ecHHHHhhcCCCcEEE
Confidence 221 4578889999988763
|