Citrus Sinensis ID: 047659
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 619 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C6S6 | 840 | Putative pentatricopeptid | yes | no | 0.936 | 0.690 | 0.446 | 1e-141 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.793 | 0.779 | 0.3 | 6e-68 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.791 | 0.772 | 0.302 | 1e-66 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.823 | 0.806 | 0.291 | 2e-66 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.806 | 0.793 | 0.300 | 3e-66 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.772 | 0.778 | 0.301 | 5e-66 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.772 | 0.759 | 0.303 | 7e-66 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.793 | 0.850 | 0.296 | 2e-65 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.688 | 0.762 | 0.320 | 2e-65 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.778 | 0.765 | 0.293 | 4e-65 |
| >sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust.
Identities = 266/596 (44%), Positives = 382/596 (64%), Gaps = 16/596 (2%)
Query: 22 ESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRD 81
+S + S+LQ N+ N +L +L + P A+++F+W P+ + HVL+++ M D
Sbjct: 59 DSSVYGSNLQRNETNLVLLSL--ESEPNSALKYFRWAEISGKDPSFYTIAHVLIRNGMFD 116
Query: 82 VASHVFDKMVIQFGKTYNFFRLFRD-SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140
VA VFD+M+ GK +N RD SL C FL+E R G +D+++EIF Y +
Sbjct: 117 VADKVFDEMITNRGKDFNVLGSIRDRSLDADVC--KFLMECCCRYGMVDKALEIFVYSTQ 174
Query: 141 MGIYLSPDLVQRLMSCLVDSNSVG----QYYKLCRA-MRGKGFCVYEFLMNGLLRKGVIE 195
+G+ + D V R+++ L+ S+ V + KLCR + G + F+++ L KG +
Sbjct: 175 LGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVT 234
Query: 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLI 255
A HR V++RGF IV+CNK+LK L ++ QI AS L ++L GP PNVVTF TLI
Sbjct: 235 KALDFHRLVMERGFRVGIVSCNKVLKGLSVD-QIEVASRLLSLVLDCGPAPNVVTFCTLI 293
Query: 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315
N FCK ++++AF L+ +M + + PDLI YS LIDG FKAG L G++L AL +G+K
Sbjct: 294 NGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVK 353
Query: 316 LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGL 375
LDVVVFSS +D YV GD+ A Y RML G PNV++Y+ILIKGLCQ GR+ EA G+
Sbjct: 354 LDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGM 413
Query: 376 FGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLIN---- 431
+GQ+L R +EPS++TYSSLIDGFCK G LR GF+LY++MIK G PD V+ +L++
Sbjct: 414 YGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSK 473
Query: 432 -GLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVIT 490
GLM A+RF + + ++ N+ +FN+L+DG CRL R + +K+F LMG+Y IKPDV T
Sbjct: 474 QGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT 533
Query: 491 HTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLME 550
T ++R +G L A+ LFF+M K GL PD + Y +I K ++GL +F LM+
Sbjct: 534 FTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQ 593
Query: 551 RNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606
RN ++ DIA+ NV++++L K ++ A K F L + +EPDI+TYNT+ICGYCSL
Sbjct: 594 RNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSL 649
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 150/500 (30%), Positives = 264/500 (52%), Gaps = 9/500 (1%)
Query: 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173
DY + N + K+D++V +F M + S +L+S + N L M
Sbjct: 48 DYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQM 107
Query: 174 RGKGFC----VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229
+ G Y L+N R+ + A + ++++ G+ P+IVT N +L C +I
Sbjct: 108 QNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRI 167
Query: 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSIL 289
+A SL ++ +G +P+ TF+TLI+ + + +A L + M+ PDL+ Y I+
Sbjct: 168 SDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIV 227
Query: 290 IDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF 349
++GL K G + LL ++ VV++++++DA +V A+ + M N G
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287
Query: 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFS 409
PNV++Y+ LI+ LC GR +A L ++ R++ P+++T+S+LID F K GKL +
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347
Query: 410 LYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMDGCC 464
LYD MIKR + PD S LING + +A F + PN+ +NTL+ G C
Sbjct: 348 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 407
Query: 465 RLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVI 524
+ KR + ++LF M + + +T+T LI G +A ++F QM+ G+ PD++
Sbjct: 408 KAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIM 467
Query: 525 TYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQL 584
TYS ++ GL + L +F+ ++R+ + PDI YN+++ + K ++ LF L
Sbjct: 468 TYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 527
Query: 585 TDRGLEPDIITYNTIICGYC 604
+ +G++P+++TY T++ G+C
Sbjct: 528 SLKGVKPNVVTYTTMMSGFC 547
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/503 (30%), Positives = 265/503 (52%), Gaps = 13/503 (2%)
Query: 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN------SVGQYY 167
DY ++ N + K+D+++ +F M S +L+S + S+G+
Sbjct: 52 DYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGE-- 109
Query: 168 KLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING 227
K+ R G Y L+N R+ I A + ++++ G+ P+IVT + +L C
Sbjct: 110 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 228 QIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYS 287
+I +A +L D ++ +G +P+ +TF+TLI+ K +A L + M++ P+L+ Y
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 288 ILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG 347
++++GL K G LL ++ DVV+F++++D+ V A+ + M
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 289
Query: 348 GFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDG 407
G PNV++YS LI LC GR +A L ++ +++ P+L+T+++LID F K GK +
Sbjct: 290 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 349
Query: 408 FSLYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMDG 462
LYD+MIKR + PD + L+NG + A + F V P++ +NTL+ G
Sbjct: 350 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 409
Query: 463 CCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPD 522
C+ KR D +LF M + D +T+T LI+G+ G +A +F QM+ G+ PD
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 469
Query: 523 VITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFG 582
++TYS ++ GL + L +F M+++ + DI IY ++ + K +D LF
Sbjct: 470 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 529
Query: 583 QLTDRGLEPDIITYNTIICGYCS 605
L+ +G++P+++TYNT+I G CS
Sbjct: 530 SLSLKGVKPNVVTYNTMISGLCS 552
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 153/525 (29%), Positives = 273/525 (52%), Gaps = 15/525 (2%)
Query: 99 NFFRL-----FRDSLGDFGCDYSFLIENYVR-IGKIDESVEIFAYMSDMGIYLSPDLVQR 152
+FF L + S DY ++ N + I K+D++V++F M + S +
Sbjct: 29 SFFNLCGSGCWERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNK 88
Query: 153 LMSCLVDSNSVGQYYKLCRAMRGKGFC----VYEFLMNGLLRKGVIENAFHMHRQVIQRG 208
L+S + N L M+ G Y +N R+ + A + ++++ G
Sbjct: 89 LLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLG 148
Query: 209 FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF 268
+ P+IVT + +L C + +I +A +L D ++ +G KP+ TF+TLI+ K +A
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 269 QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY 328
L + M++ PDL+ Y +++GL K G + LL ++ DVV++++++D
Sbjct: 209 ALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGL 268
Query: 329 VGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL 388
+ A+ + M N G P+V +YS LI LC GR +A L ++ R++ P++
Sbjct: 269 CKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNV 328
Query: 389 LTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQ 443
+T+S+LID F K GKL + LYD MIKR + PD S LING + +A F
Sbjct: 329 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 388
Query: 444 SVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGS 503
+ PN+ ++TL+ G C+ KR + ++LF M + + +T+T LI G
Sbjct: 389 MISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 448
Query: 504 LSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNV 563
+A ++F QM+ G+ P+++TY+ ++ GL K ++ + +F+ ++R+ + PDI YN+
Sbjct: 449 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 508
Query: 564 LLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNS 608
++ + K ++ +LF L+ +G+ P++I YNT+I G+C S
Sbjct: 509 MIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGS 553
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 271/512 (52%), Gaps = 13/512 (2%)
Query: 104 FRDSLGDFGCDYSFLIENYVR-IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS 162
+ S DY ++ N + I K+D++V++F M + S +L+S + N
Sbjct: 39 WERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNK 98
Query: 163 VGQYYKLCRAMRGKGFC----VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218
L M+ G Y +N R+ + A + ++++ G+ P+IVT +
Sbjct: 99 FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158
Query: 219 ILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD 278
+L C + +I +A +L D ++ +G KP+ TF+TLI+ K +A L + M++
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
Query: 279 LVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAV 338
PDL+ Y +++GL K G + LL +K +VV+F++++D+ V AV
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAV 278
Query: 339 QTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGF 398
+ M G PNV++Y+ LI LC GR +A L +L +++ P+++T+++LID F
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAF 338
Query: 399 CKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQSVRMTLIPNL 453
K GKL + L++ MI+R + PD + +LLING + +A + F V +PN+
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNI 398
Query: 454 FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQ 513
+NTL++G C+ KR D V+LF M + + +T+T +I+G G SA ++F Q
Sbjct: 399 QTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQ 458
Query: 514 MLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECN 573
M+ + D++TYS ++HGL + L +FK ++++ + +I IYN ++ + K
Sbjct: 459 MVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK 518
Query: 574 LDAALKLFGQLTDRGLEPDIITYNTIICGYCS 605
+ A LF L+ ++PD++TYNT+I G CS
Sbjct: 519 VGEAWDLFCSLS---IKPDVVTYNTMISGLCS 547
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 147/487 (30%), Positives = 258/487 (52%), Gaps = 9/487 (1%)
Query: 127 KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC----VYE 182
K+DE+V++F M + S +L+S + M G Y
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104
Query: 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242
++N L R+ + A + ++++ G+ P+IVT N +L C +I A +L D ++ +
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 243 GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEG 302
G +P+ VTF+TL++ + K +A L M+ PDL+ Y +I+GL K G
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224
Query: 303 NELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG 362
LL ++ DVV++S+V+D+ V A+ + M N G P+V +YS LI
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 363 LCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422
LC GR +A L +L R++ P+++T++SLID F K GKL + L+D MI+R + P+
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344
Query: 423 AVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFM 477
V + LING + +A + F V +P++ +NTL++G C+ K+ D ++LF
Sbjct: 345 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFR 404
Query: 478 LMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK 537
M + + +T+T LI G +A ++F QM+ G+ P+++TY+ ++ GL K
Sbjct: 405 DMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464
Query: 538 NISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYN 597
+ + +F+ ++++ + PDI YN++ + K ++ LF L+ +G++PD+I YN
Sbjct: 465 KLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYN 524
Query: 598 TIICGYC 604
T+I G+C
Sbjct: 525 TMISGFC 531
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 148/487 (30%), Positives = 256/487 (52%), Gaps = 9/487 (1%)
Query: 127 KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR----GKGFCVYE 182
K+D++V++F M S +L+S + N L M+ Y
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242
L+N R+ + A + ++++ G+ P+IVT + +L C +I A +L D + ++
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 243 GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEG 302
+PN VTF+TLI+ K +A L + M+ PDL Y +++GL K G +
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 303 NELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG 362
LL ++ DVV++++++DA +V A+ + M N G PNV++Y+ LI+
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299
Query: 363 LCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422
LC GR +A L ++ R++ P+++T+S+LID F K GKL + LYD MIKR + PD
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359
Query: 423 AVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFM 477
S LING + +A F + PN+ +NTL+ G C+ KR + ++LF
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419
Query: 478 LMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK 537
M + + +T+ LI+G+ G A +F +M+ G+ PD+ITYS ++ GL K
Sbjct: 420 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 479
Query: 538 NISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYN 597
+ L +F+ ++++ + PDI YN+++ + K ++ LF L+ +G++P++I Y
Sbjct: 480 KLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYT 539
Query: 598 TIICGYC 604
T+I G+C
Sbjct: 540 TMISGFC 546
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/500 (29%), Positives = 263/500 (52%), Gaps = 9/500 (1%)
Query: 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173
DY ++ N + K+D+++ +F M S +L+S + L M
Sbjct: 52 DYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKM 111
Query: 174 RGKGFC----VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229
+ G Y L+N R+ I A + ++++ G+ P+IVT + +L C +I
Sbjct: 112 QRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 171
Query: 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSIL 289
+A +L D ++ +G +P+ +TF+TLI+ K +A L + M++ P+L+ Y ++
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231
Query: 290 IDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF 349
++GL K G + LL ++ +VV++S+V+D+ A+ + M N G
Sbjct: 232 VNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGV 291
Query: 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFS 409
PNVI+YS LI LC R +A L ++ R++ P+++T+++LID F K GKL +
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEK 351
Query: 410 LYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMDGCC 464
LYD MIKR + PD S LING + +A F + PN+ +NTL++G C
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411
Query: 465 RLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVI 524
+ KR + V+LF M + + +T+T LI G +A ++F QM+ G+ P+++
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471
Query: 525 TYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQL 584
TY+ ++ GL K + + +F+ ++R+ + P I YN+++ + K ++ LF L
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531
Query: 585 TDRGLEPDIITYNTIICGYC 604
+ +G++PD+I YNT+I G+C
Sbjct: 532 SLKGVKPDVIIYNTMISGFC 551
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 237/431 (54%), Gaps = 5/431 (1%)
Query: 180 VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVL 239
Y L+N R+ I A + ++++ G+ P+IVT + +L C +I +A +L D +
Sbjct: 47 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 106
Query: 240 LLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRL 299
+ +G +P+ +TF+TLI+ K +A L + M++ P+L+ Y ++++GL K G +
Sbjct: 107 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 166
Query: 300 KEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSIL 359
LL ++ DVV+F++++D+ V A+ + M G PNV++YS L
Sbjct: 167 DLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 226
Query: 360 IKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGL 419
I LC GR +A L ++ +++ P+L+T+++LID F K GK + L+D+MIKR +
Sbjct: 227 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286
Query: 420 KPDAVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVK 474
PD + LING + A + F V P+L +NTL+ G C+ KR D +
Sbjct: 287 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 346
Query: 475 LFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF 534
LF M + D +T+T LI+G+ G +A +F QM+ G+ PD++TYS ++ GL
Sbjct: 347 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 406
Query: 535 KGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDII 594
+ L +F M+++ + DI IY ++ + K +D LF L+ +G++P+++
Sbjct: 407 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 466
Query: 595 TYNTIICGYCS 605
TYNT+I G CS
Sbjct: 467 TYNTMISGLCS 477
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 255/491 (51%), Gaps = 9/491 (1%)
Query: 127 KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC----VYE 182
K+D++V +F M + S +L+S + N L M+ G Y
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242
L+N R+ + A + ++++ G+ PNIVT + +L C + +I A +L D + +
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 243 GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEG 302
G +PN VTF+TLI+ K +A L + M+ PDL+ Y ++++GL K G
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 303 NELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG 362
LL L+ V+++++++D + A+ + M G PNV++YS LI
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 363 LCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422
LC GR +A L ++ R++ P + T+S+LID F K GKL + LYD M+KR + P
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 423 AVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFM 477
V S LING + +A + F V P++ +NTL+ G C+ KR + +++F
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420
Query: 478 LMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK 537
M + + +T+ +LI+G+ G A +F +M+ G+ P+++TY+ ++ GL K
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480
Query: 538 NISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYN 597
+ + +F+ ++R+ + P I YN+++ + K ++ LF L+ +G++PD++ YN
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540
Query: 598 TIICGYCSLNS 608
T+I G+C S
Sbjct: 541 TMISGFCRKGS 551
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 619 | ||||||
| 225427506 | 1131 | PREDICTED: putative pentatricopeptide re | 0.898 | 0.491 | 0.521 | 1e-172 | |
| 296088470 | 822 | unnamed protein product [Vitis vinifera] | 0.898 | 0.676 | 0.521 | 1e-171 | |
| 224135613 | 854 | predicted protein [Populus trichocarpa] | 0.933 | 0.676 | 0.518 | 1e-167 | |
| 240254191 | 840 | pentatricopeptide (PPR) repeat-containin | 0.936 | 0.690 | 0.446 | 1e-139 | |
| 12321310 | 690 | PPR-repeat protein, putative [Arabidopsi | 0.936 | 0.840 | 0.446 | 1e-139 | |
| 334182978 | 811 | pentatricopeptide (PPR) repeat-containin | 0.890 | 0.679 | 0.424 | 1e-126 | |
| 297846140 | 689 | predicted protein [Arabidopsis lyrata su | 0.722 | 0.648 | 0.482 | 1e-117 | |
| 302780401 | 755 | hypothetical protein SELMODRAFT_96626 [S | 0.877 | 0.719 | 0.273 | 3e-66 | |
| 255540069 | 1151 | pentatricopeptide repeat-containing prot | 0.812 | 0.437 | 0.304 | 3e-66 | |
| 15221691 | 630 | pentatricopeptide repeat-containing prot | 0.793 | 0.779 | 0.3 | 4e-66 |
| >gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g31840-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 301/577 (52%), Positives = 408/577 (70%), Gaps = 21/577 (3%)
Query: 46 NNPTPAIQFFKWTHN----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTY--- 98
+NPT A++FF+W N C + + HVLL+ M D A+ VFD+MV QFG
Sbjct: 67 SNPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLG 126
Query: 99 NFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV 158
F FR+ + YSFL+ Y R G +D +V+ FA+MS MG+ +S ++ L+
Sbjct: 127 EFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLI 186
Query: 159 DSNSVG----QYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV 214
DS+ + Y ++C KG VYEF+ N L++G +E + HR +++RG VP IV
Sbjct: 187 DSDRIDVILENYEEMC-----KGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIV 241
Query: 215 TCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLM 274
CNKILK LC+ QIG AS FD+++ GP PN+VTFSTLIN +CKE +L++AF LYNLM
Sbjct: 242 DCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLM 301
Query: 275 MEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDV 334
+E +VPDL+IYSILI+GLF+AG+L+EGN L AL RG+K+DVV+FSS+MDAYV +GD+
Sbjct: 302 IEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDL 361
Query: 335 GRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSL 394
G+A++ Y RML G PNV++YSILI GLC+ GR++EACG+FGQ+L + LEPS+LTYSSL
Sbjct: 362 GKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSL 421
Query: 395 IDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQSVRMTL 449
IDGFCKS LRDGF LY M+++G PD VVCS+LINGL M +ALRFFFQ+V+ L
Sbjct: 422 IDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGL 481
Query: 450 IPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAIL 509
N ++FN L+DGC RLKR D +K+++LMGMY + PDV+T+TVL++G+A QG L A+
Sbjct: 482 TLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALA 541
Query: 510 LFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLI 569
LFFQ+LK+G +PD I Y +I G K ++ + GL +FKLM+ NG+ PDI IYNVL+NM
Sbjct: 542 LFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFF 601
Query: 570 KECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606
+E ++ L+L ++ GLEPDI+TYNT+ICGYCSL
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSL 638
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 301/577 (52%), Positives = 408/577 (70%), Gaps = 21/577 (3%)
Query: 46 NNPTPAIQFFKWTHN----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTY--- 98
+NPT A++FF+W N C + + HVLL+ M D A+ VFD+MV QFG
Sbjct: 67 SNPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLG 126
Query: 99 NFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV 158
F FR+ + YSFL+ Y R G +D +V+ FA+MS MG+ +S ++ L+
Sbjct: 127 EFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLI 186
Query: 159 DSNSVG----QYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV 214
DS+ + Y ++C KG VYEF+ N L++G +E + HR +++RG VP IV
Sbjct: 187 DSDRIDVILENYEEMC-----KGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIV 241
Query: 215 TCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLM 274
CNKILK LC+ QIG AS FD+++ GP PN+VTFSTLIN +CKE +L++AF LYNLM
Sbjct: 242 DCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLM 301
Query: 275 MEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDV 334
+E +VPDL+IYSILI+GLF+AG+L+EGN L AL RG+K+DVV+FSS+MDAYV +GD+
Sbjct: 302 IEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDL 361
Query: 335 GRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSL 394
G+A++ Y RML G PNV++YSILI GLC+ GR++EACG+FGQ+L + LEPS+LTYSSL
Sbjct: 362 GKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSL 421
Query: 395 IDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQSVRMTL 449
IDGFCKS LRDGF LY M+++G PD VVCS+LINGL M +ALRFFFQ+V+ L
Sbjct: 422 IDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGL 481
Query: 450 IPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAIL 509
N ++FN L+DGC RLKR D +K+++LMGMY + PDV+T+TVL++G+A QG L A+
Sbjct: 482 TLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALA 541
Query: 510 LFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLI 569
LFFQ+LK+G +PD I Y +I G K ++ + GL +FKLM+ NG+ PDI IYNVL+NM
Sbjct: 542 LFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFF 601
Query: 570 KECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606
+E ++ L+L ++ GLEPDI+TYNT+ICGYCSL
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSL 638
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa] gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 310/598 (51%), Positives = 412/598 (68%), Gaps = 20/598 (3%)
Query: 27 ISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN----CVSSPNIAQLIHVLLQSDMRDV 82
+S LQ ++ +L P AI+FF+W + +S+P+ L+HVLLQ+ +
Sbjct: 75 LSKLQLYHVPDVIISL--QPKPFSAIRFFEWAESFFISPLSAPSFCALLHVLLQNQLFSR 132
Query: 83 ASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCD-----YSFLIENYVRIGKIDESVEIFAY 137
A+ VFDK ++QFG Y+ FRD D Y FLIE+Y R G D+SV+IF +
Sbjct: 133 AACVFDKFIMQFGNDYDTLDAFRDGFCDLDSTNHSVVYGFLIESYCRKGMFDKSVDIFMH 192
Query: 138 MSDMGIYLSPDLVQRLMSCLVDSNSV----GQYYKLCRAMRGKGFCVYEFLMNGLLRKGV 193
+ GI++SP++V L+ L+DS+ V +Y +LC AMR + F VYEF+MN + KG
Sbjct: 193 VCVKGIFVSPNVVYLLLGSLIDSHCVEVIVDKYGELCSAMREQPFSVYEFVMNRFMNKGE 252
Query: 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFST 253
+E H+ ++Q GF +I+TCNKILK + + IG A F++++ +GPKPNVVTFST
Sbjct: 253 VEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFST 312
Query: 254 LINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRG 313
LI+A+CKE L+KAF L+++M + PDLI+YSILIDGLFKAGRL++G LLL ALD+G
Sbjct: 313 LIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKG 372
Query: 314 LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEAC 373
+KLDVV FSS MDAYV IGD+GR +Q Y RMLN G PNV+S SILIKG CQ GR++EAC
Sbjct: 373 IKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEAC 432
Query: 374 GLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLIN-- 431
GLF Q+L EPS+LTYS+LI GFCKSG LRDGF LY++MIK+ +PD +V S+LIN
Sbjct: 433 GLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGL 492
Query: 432 ---GLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDV 488
GL+GDALRFFFQ+V L PN+F NTL+D CRLK +K++ LMGM NIK D
Sbjct: 493 CKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADT 552
Query: 489 ITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKL 548
+T+T+LI+G A G + A++LFFQMLK+ PDVITY +I GL K K S GL +F
Sbjct: 553 VTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDF 612
Query: 549 MERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606
M +N VAPDIAIYNVL+NM +E +L+AAL LF + +RG +PD+ T+NT+IC YC+
Sbjct: 613 MCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNF 670
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g31840 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 266/596 (44%), Positives = 382/596 (64%), Gaps = 16/596 (2%)
Query: 22 ESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRD 81
+S + S+LQ N+ N +L +L + P A+++F+W P+ + HVL+++ M D
Sbjct: 59 DSSVYGSNLQRNETNLVLLSL--ESEPNSALKYFRWAEISGKDPSFYTIAHVLIRNGMFD 116
Query: 82 VASHVFDKMVIQFGKTYNFFRLFRD-SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140
VA VFD+M+ GK +N RD SL C FL+E R G +D+++EIF Y +
Sbjct: 117 VADKVFDEMITNRGKDFNVLGSIRDRSLDADVC--KFLMECCCRYGMVDKALEIFVYSTQ 174
Query: 141 MGIYLSPDLVQRLMSCLVDSNSVG----QYYKLCRA-MRGKGFCVYEFLMNGLLRKGVIE 195
+G+ + D V R+++ L+ S+ V + KLCR + G + F+++ L KG +
Sbjct: 175 LGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVT 234
Query: 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLI 255
A HR V++RGF IV+CNK+LK L ++ QI AS L ++L GP PNVVTF TLI
Sbjct: 235 KALDFHRLVMERGFRVGIVSCNKVLKGLSVD-QIEVASRLLSLVLDCGPAPNVVTFCTLI 293
Query: 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315
N FCK ++++AF L+ +M + + PDLI YS LIDG FKAG L G++L AL +G+K
Sbjct: 294 NGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVK 353
Query: 316 LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGL 375
LDVVVFSS +D YV GD+ A Y RML G PNV++Y+ILIKGLCQ GR+ EA G+
Sbjct: 354 LDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGM 413
Query: 376 FGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLIN---- 431
+GQ+L R +EPS++TYSSLIDGFCK G LR GF+LY++MIK G PD V+ +L++
Sbjct: 414 YGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSK 473
Query: 432 -GLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVIT 490
GLM A+RF + + ++ N+ +FN+L+DG CRL R + +K+F LMG+Y IKPDV T
Sbjct: 474 QGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT 533
Query: 491 HTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLME 550
T ++R +G L A+ LFF+M K GL PD + Y +I K ++GL +F LM+
Sbjct: 534 FTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQ 593
Query: 551 RNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606
RN ++ DIA+ NV++++L K ++ A K F L + +EPDI+TYNT+ICGYCSL
Sbjct: 594 RNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSL 649
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 266/596 (44%), Positives = 382/596 (64%), Gaps = 16/596 (2%)
Query: 22 ESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRD 81
+S + S+LQ N+ N +L +L + P A+++F+W P+ + HVL+++ M D
Sbjct: 59 DSSVYGSNLQRNETNLVLLSL--ESEPNSALKYFRWAEISGKDPSFYTIAHVLIRNGMFD 116
Query: 82 VASHVFDKMVIQFGKTYNFFRLFRD-SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140
VA VFD+M+ GK +N RD SL C FL+E R G +D+++EIF Y +
Sbjct: 117 VADKVFDEMITNRGKDFNVLGSIRDRSLDADVC--KFLMECCCRYGMVDKALEIFVYSTQ 174
Query: 141 MGIYLSPDLVQRLMSCLVDSNSVG----QYYKLCRA-MRGKGFCVYEFLMNGLLRKGVIE 195
+G+ + D V R+++ L+ S+ V + KLCR + G + F+++ L KG +
Sbjct: 175 LGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVT 234
Query: 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLI 255
A HR V++RGF IV+CNK+LK L ++ QI AS L ++L GP PNVVTF TLI
Sbjct: 235 KALDFHRLVMERGFRVGIVSCNKVLKGLSVD-QIEVASRLLSLVLDCGPAPNVVTFCTLI 293
Query: 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315
N FCK ++++AF L+ +M + + PDLI YS LIDG FKAG L G++L AL +G+K
Sbjct: 294 NGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVK 353
Query: 316 LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGL 375
LDVVVFSS +D YV GD+ A Y RML G PNV++Y+ILIKGLCQ GR+ EA G+
Sbjct: 354 LDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGM 413
Query: 376 FGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLIN---- 431
+GQ+L R +EPS++TYSSLIDGFCK G LR GF+LY++MIK G PD V+ +L++
Sbjct: 414 YGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSK 473
Query: 432 -GLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVIT 490
GLM A+RF + + ++ N+ +FN+L+DG CRL R + +K+F LMG+Y IKPDV T
Sbjct: 474 QGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT 533
Query: 491 HTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLME 550
T ++R +G L A+ LFF+M K GL PD + Y +I K ++GL +F LM+
Sbjct: 534 FTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQ 593
Query: 551 RNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606
RN ++ DIA+ NV++++L K ++ A K F L + +EPDI+TYNT+ICGYCSL
Sbjct: 594 RNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSL 649
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/596 (42%), Positives = 365/596 (61%), Gaps = 45/596 (7%)
Query: 22 ESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRD 81
+S + S+LQ N+ N +L +L + P A+++F+W P+ + HVL+++ M D
Sbjct: 59 DSSVYGSNLQRNETNLVLLSL--ESEPNSALKYFRWAEISGKDPSFYTIAHVLIRNGMFD 116
Query: 82 VASHVFDKMVIQFGKTYNFFRLFRD-SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140
VA VFD+M+ GK +N RD SL C FL+E R G +D+++EIF Y +
Sbjct: 117 VADKVFDEMITNRGKDFNVLGSIRDRSLDADVC--KFLMECCCRYGMVDKALEIFVYSTQ 174
Query: 141 MGIYLSPDLVQRLMSCLVDSNSVG----QYYKLCRA-MRGKGFCVYEFLMNGLLRKGVIE 195
+G+ + D V R+++ L+ S+ V + KLCR + G + F+++ L KG +
Sbjct: 175 LGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVT 234
Query: 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLI 255
A HR V++RGF IV+CNK+LK L ++ QI AS L ++L GP PNVVTF TLI
Sbjct: 235 KALDFHRLVMERGFRVGIVSCNKVLKGLSVD-QIEVASRLLSLVLDCGPAPNVVTFCTLI 293
Query: 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315
N FCK ++++AF L+ +M + + PDLI YS LIDG FKAG L G++L AL +G+K
Sbjct: 294 NGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVK 353
Query: 316 LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGL 375
LDVVVFSS +D YV GD+ A Y RML G PNV++Y+ILIKGLCQ GR+ EA G+
Sbjct: 354 LDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGM 413
Query: 376 FGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLIN---- 431
+GQ+L R +EPS++TYSSLIDGFCK G LR GF+LY++MIK G PD V+ +L++
Sbjct: 414 YGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSK 473
Query: 432 -GLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVIT 490
GLM A+RF + + ++ N+ +FN+L+DG CRL R + +K+F LMG+Y IKPDV T
Sbjct: 474 QGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT 533
Query: 491 HTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLME 550
T ++R S + K ++GL +F LM+
Sbjct: 534 FTTVMR-----------------------------VSIMEDAFCKHMKPTIGLQLFDLMQ 564
Query: 551 RNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606
RN ++ DIA+ NV++++L K ++ A K F L + +EPDI+TYNT+ICGYCSL
Sbjct: 565 RNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSL 620
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/454 (48%), Positives = 302/454 (66%), Gaps = 7/454 (1%)
Query: 159 DSNSVGQYYKLCRAMRGK-GFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217
D + KLCR G + F+++ L RKG + A HR V++RGF +IV+CN
Sbjct: 89 DGQRSDSFDKLCRGGTVPFGVSAHGFVLDALFRKGEVTKALDFHRLVMERGFRVDIVSCN 148
Query: 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277
KILK L ++ QI AS + ++L GP PNVVTF TLIN FCK ++++AF+L+ +M +
Sbjct: 149 KILKGLSVD-QIEVASRMLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQR 207
Query: 278 DLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRA 337
+ PDLI YS LIDG FKAG L G++L AL +G+KLDVVVFSS +D YV G + A
Sbjct: 208 GIAPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTA 267
Query: 338 VQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDG 397
Y RML G PNV++Y+ILIKGLCQ GR+ EA G++ Q+L R LEPS++TYSSLIDG
Sbjct: 268 FDVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDG 327
Query: 398 FCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLIN-----GLMGDALRFFFQSVRMTLIPN 452
FCK G LR GF+LY++MIK G PD V+ +L++ GLM ALRF +++ ++ PN
Sbjct: 328 FCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPN 387
Query: 453 LFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFF 512
+ +FN+L+DG CRL R + +K+F LMG+Y IKPDV T T L+R +G L + LFF
Sbjct: 388 VVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFF 447
Query: 513 QMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKEC 572
+M K GL PD + + ++ K ++GL +F LM+RN + DIA+ NV++N+L K
Sbjct: 448 RMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQ 507
Query: 573 NLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606
+++ A K F L + +EPDI+TYNT+ICGYCSL
Sbjct: 508 SVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSL 541
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii] gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 166/607 (27%), Positives = 292/607 (48%), Gaps = 64/607 (10%)
Query: 46 NNPTPAIQFFKWT-------HNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTY 98
++P A++FF W HN + +L LL++ D H+ K G T
Sbjct: 2 SDPDAALRFFHWASKQQGFDHNVYT---YNRLFEALLRARRIDETCHIL-KNGWPPGITP 57
Query: 99 NFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV 158
N F Y+ +I+ + G +D++ E+ M + G + ++ L
Sbjct: 58 NVF------------TYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALC 105
Query: 159 DSNSVGQYYKLCRAMR-GKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217
+ + + R+M K + +++GL + + A ++ ++G VPN T N
Sbjct: 106 KARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYN 165
Query: 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277
++ C ++ A L + G PNVVT+ST+I+ FC++ K++ A++L+ M+E
Sbjct: 166 VLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN 225
Query: 278 DLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRA 337
+P+L+ Y+ L+ GL + G + E ELL +RGL+ D + ++M G + A
Sbjct: 226 GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMA 285
Query: 338 VQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLF--------------------- 376
++ ++ NG P+V++YS LI GLC+ GRL EAC LF
Sbjct: 286 LKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDG 345
Query: 377 ---------GQVLIRRLE-----PSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422
Q ++ +E P+++TYSSLIDG CK+G++RD ++ MI RG++P+
Sbjct: 346 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 405
Query: 423 AVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFM 477
V + LI+G + AL + +P++ +NTL+DG C+ RA + +LF
Sbjct: 406 VVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFG 465
Query: 478 LMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK 537
M PDVIT++ LI G + A LF MLK+ + PDV+T+S ++ G
Sbjct: 466 DMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 525
Query: 538 NISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYN 597
+ + + M + +PD+ Y L++ K + A ++ ++ RG +P+++TY
Sbjct: 526 LVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYT 585
Query: 598 TIICGYC 604
+I +C
Sbjct: 586 ALIDAFC 592
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 158/519 (30%), Positives = 265/519 (51%), Gaps = 16/519 (3%)
Query: 100 FFRLFRDSLGDFGCD---YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQR--LM 154
F+++++ LG D Y+ LI Y R+GK++E + M + G P+LV ++
Sbjct: 217 FWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCI--PNLVTYSVVI 274
Query: 155 SCLVDSNSVGQYYKLCRAMRGKGFC----VYEFLMNGLLRKGVIENAFHMHRQVIQRGFV 210
+ L + V + +L R+M KG +Y L++G R+ M ++ G
Sbjct: 275 AGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLK 334
Query: 211 PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270
P+ V ++ IG A + + + K N T+ LI+ CK LEKA L
Sbjct: 335 PDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDL 394
Query: 271 YNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVG 330
++ M M + PD+ Y+ LI+G +K +++ ELL+ L + + ++++
Sbjct: 395 FSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCH 454
Query: 331 IGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLT 390
GD+ RA + + M++ G PN++ Y+ ++KGL ++GR EA + G + + L P +
Sbjct: 455 CGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFC 514
Query: 391 YSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQSV 445
Y+++I GFCK+GK+ +G S MI +GLKP+ I+G M A R F + +
Sbjct: 515 YNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEML 574
Query: 446 RMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLS 505
+ PN I L+DG C+ T F M + PDV TH+VLI G++ G L
Sbjct: 575 DSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQ 634
Query: 506 SAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLL 565
A+ +F ++L +GL PDV TY+++I L K ++ + M + G+ P+I YN L+
Sbjct: 635 EAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALI 694
Query: 566 NMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYC 604
N L K + A +LF + ++GL + +TY+TII GYC
Sbjct: 695 NGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYC 733
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63130, mitochondrial; Flags: Precursor gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana] gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana] gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana] gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/500 (30%), Positives = 264/500 (52%), Gaps = 9/500 (1%)
Query: 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173
DY + N + K+D++V +F M + S +L+S + N L M
Sbjct: 48 DYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQM 107
Query: 174 RGKGFC----VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229
+ G Y L+N R+ + A + ++++ G+ P+IVT N +L C +I
Sbjct: 108 QNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRI 167
Query: 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSIL 289
+A SL ++ +G +P+ TF+TLI+ + + +A L + M+ PDL+ Y I+
Sbjct: 168 SDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIV 227
Query: 290 IDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF 349
++GL K G + LL ++ VV++++++DA +V A+ + M N G
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287
Query: 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFS 409
PNV++Y+ LI+ LC GR +A L ++ R++ P+++T+S+LID F K GKL +
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347
Query: 410 LYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMDGCC 464
LYD MIKR + PD S LING + +A F + PN+ +NTL+ G C
Sbjct: 348 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 407
Query: 465 RLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVI 524
+ KR + ++LF M + + +T+T LI G +A ++F QM+ G+ PD++
Sbjct: 408 KAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIM 467
Query: 525 TYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQL 584
TYS ++ GL + L +F+ ++R+ + PDI YN+++ + K ++ LF L
Sbjct: 468 TYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 527
Query: 585 TDRGLEPDIITYNTIICGYC 604
+ +G++P+++TY T++ G+C
Sbjct: 528 SLKGVKPNVVTYTTMMSGFC 547
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 619 | ||||||
| TAIR|locus:2034528 | 840 | AT1G31840 [Arabidopsis thalian | 0.936 | 0.690 | 0.446 | 1.6e-132 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.788 | 0.774 | 0.306 | 1.1e-66 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.788 | 0.775 | 0.307 | 4.1e-65 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.791 | 0.772 | 0.304 | 6.7e-65 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.786 | 0.774 | 0.305 | 8.5e-65 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.767 | 0.773 | 0.308 | 1.8e-64 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.820 | 0.806 | 0.295 | 7.6e-64 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.793 | 0.850 | 0.3 | 9.7e-64 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.772 | 0.750 | 0.297 | 1.8e-62 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.817 | 0.817 | 0.279 | 2.1e-61 |
| TAIR|locus:2034528 AT1G31840 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 266/596 (44%), Positives = 382/596 (64%)
Query: 22 ESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRD 81
+S + S+LQ N+ N +L +L + P A+++F+W P+ + HVL+++ M D
Sbjct: 59 DSSVYGSNLQRNETNLVLLSL--ESEPNSALKYFRWAEISGKDPSFYTIAHVLIRNGMFD 116
Query: 82 VASHVFDKMVIQFGKTYNFFRLFRD-SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140
VA VFD+M+ GK +N RD SL C FL+E R G +D+++EIF Y +
Sbjct: 117 VADKVFDEMITNRGKDFNVLGSIRDRSLDADVC--KFLMECCCRYGMVDKALEIFVYSTQ 174
Query: 141 MGIYLSPDLVQRLMSCLVDSNSVG----QYYKLCRA-MRGKGFCVYEFLMNGLLRKGVIE 195
+G+ + D V R+++ L+ S+ V + KLCR + G + F+++ L KG +
Sbjct: 175 LGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVT 234
Query: 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLI 255
A HR V++RGF IV+CNK+LK L ++ QI AS L ++L GP PNVVTF TLI
Sbjct: 235 KALDFHRLVMERGFRVGIVSCNKVLKGLSVD-QIEVASRLLSLVLDCGPAPNVVTFCTLI 293
Query: 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315
N FCK ++++AF L+ +M + + PDLI YS LIDG FKAG L G++L AL +G+K
Sbjct: 294 NGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVK 353
Query: 316 LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGL 375
LDVVVFSS +D YV GD+ A Y RML G PNV++Y+ILIKGLCQ GR+ EA G+
Sbjct: 354 LDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGM 413
Query: 376 FGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL-- 433
+GQ+L R +EPS++TYSSLIDGFCK G LR GF+LY++MIK G PD V+ +L++GL
Sbjct: 414 YGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSK 473
Query: 434 ---MGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVIT 490
M A+RF + + ++ N+ +FN+L+DG CRL R + +K+F LMG+Y IKPDV T
Sbjct: 474 QGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT 533
Query: 491 HTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLME 550
T ++R +G L A+ LFF+M K GL PD + Y +I K ++GL +F LM+
Sbjct: 534 FTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQ 593
Query: 551 RNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606
RN ++ DIA+ NV++++L K ++ A K F L + +EPDI+TYNT+ICGYCSL
Sbjct: 594 RNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSL 649
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 154/503 (30%), Positives = 273/503 (54%)
Query: 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQ--RLMSCLVDSNSVGQYYKLCR 171
DY + N + K+D++V +F M + P +V+ +L+S + N L
Sbjct: 48 DYRKISINRLNDLKLDDAVNLFGDMVKSRPF--PSIVEFSKLLSAIAKMNKFDLVISLGE 105
Query: 172 AMRGKGFC----VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING 227
M+ G Y L+N R+ + A + ++++ G+ P+IVT N +L C
Sbjct: 106 QMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGN 165
Query: 228 QIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYS 287
+I +A SL ++ +G +P+ TF+TLI+ + + +A L + M+ PDL+ Y
Sbjct: 166 RISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYG 225
Query: 288 ILIDGLFKAGRLKEGNELLLTALDRG-LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346
I+++GL K G + LL +++G ++ VV++++++DA +V A+ + M N
Sbjct: 226 IVVNGLCKRGDIDLALSLL-KKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDN 284
Query: 347 GGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRD 406
G PNV++Y+ LI+ LC GR +A L ++ R++ P+++T+S+LID F K GKL +
Sbjct: 285 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 344
Query: 407 GFSLYDNMIKRGLKPDAVVCSLLINGL-MGDAL---RFFFQ-SVRMTLIPNLFIFNTLMD 461
LYD MIKR + PD S LING M D L + F+ + PN+ +NTL+
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 404
Query: 462 GCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTP 521
G C+ KR + ++LF M + + +T+T LI G +A ++F QM+ G+ P
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLP 464
Query: 522 DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLF 581
D++TYS ++ GL + L +F+ ++R+ + PDI YN+++ + K ++ LF
Sbjct: 465 DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 524
Query: 582 GQLTDRGLEPDIITYNTIICGYC 604
L+ +G++P+++TY T++ G+C
Sbjct: 525 CSLSLKGVKPNVVTYTTMMSGFC 547
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 155/504 (30%), Positives = 273/504 (54%)
Query: 114 DYSFLIENYVRIG-KIDESVEIFAYMSDMGIYLSPDLVQ--RLMSCLVDSNSVGQYYKLC 170
DY + V + K+D++V++F M P +V+ +L+S + N L
Sbjct: 46 DYREKLSRNVLLDLKLDDAVDLFGEMVQSRPL--PSIVEFNKLLSAIAKMNKFDLVISLG 103
Query: 171 RAMRGK--GFCVYEF--LMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN 226
M+ + +Y + L+N R+ + A + ++++ G+ P+IVT + +L C
Sbjct: 104 ERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHG 163
Query: 227 GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIY 286
+I A +L D + ++ +PN VTF+TLI+ K +A L + M+ PDL Y
Sbjct: 164 KRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTY 223
Query: 287 SILIDGLFKAGRLKEGNELLLTALDRG-LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRML 345
+++GL K G + LL +++G ++ DVV++++++DA +V A+ + M
Sbjct: 224 GTVVNGLCKRGDIDLALSLL-KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMD 282
Query: 346 NGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLR 405
N G PNV++Y+ LI+ LC GR +A L ++ R++ P+++T+S+LID F K GKL
Sbjct: 283 NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 342
Query: 406 DGFSLYDNMIKRGLKPDAVVCSLLINGL-MGDAL---RFFFQ-SVRMTLIPNLFIFNTLM 460
+ LYD MIKR + PD S LING M D L + F+ + PN+ +NTL+
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402
Query: 461 DGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLT 520
G C+ KR + ++LF M + + +T+ LI+G+ G A +F +M+ G+
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 462
Query: 521 PDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKL 580
PD+ITYS ++ GL K + L +F+ ++++ + PDI YN+++ + K ++ L
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522
Query: 581 FGQLTDRGLEPDIITYNTIICGYC 604
F L+ +G++P++I Y T+I G+C
Sbjct: 523 FCSLSLKGVKPNVIIYTTMISGFC 546
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 153/503 (30%), Positives = 265/503 (52%)
Query: 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQ--RLMSCLVDSNSVGQYYKLCR 171
DY ++ N + K+D+++ +F M P +V+ +L+S + L
Sbjct: 52 DYREILRNGLHDMKLDDAIGLFGGMVKSRPL--PSIVEFNKLLSAIAKMKKFDVVISLGE 109
Query: 172 AMRG----KGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING 227
M+ G Y L+N R+ I A + ++++ G+ P+IVT + +L C
Sbjct: 110 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 228 QIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYS 287
+I +A +L D ++ +G +P+ +TF+TLI+ K +A L + M++ P+L+ Y
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 288 ILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG 347
++++GL K G LL ++ DVV+F++++D+ V A+ + M
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 289
Query: 348 GFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDG 407
G PNV++YS LI LC GR +A L ++ +++ P+L+T+++LID F K GK +
Sbjct: 290 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 349
Query: 408 FSLYDNMIKRGLKPDAVVCSLLINGL-MGDAL----RFFFQSVRMTLIPNLFIFNTLMDG 462
LYD+MIKR + PD + L+NG M D L + F V P++ +NTL+ G
Sbjct: 350 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 409
Query: 463 CCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPD 522
C+ KR D +LF M + D +T+T LI+G+ G +A +F QM+ G+ PD
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 469
Query: 523 VITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFG 582
++TYS ++ GL + L +F M+++ + DI IY ++ + K +D LF
Sbjct: 470 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 529
Query: 583 QLTDRGLEPDIITYNTIICGYCS 605
L+ +G++P+++TYNT+I G CS
Sbjct: 530 SLSLKGVKPNVVTYNTMISGLCS 552
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 154/504 (30%), Positives = 272/504 (53%)
Query: 114 DYSFLIENYVR-IGKIDESVEIFAYMSDMGIYLSPDLVQ--RLMSCLVDSNSVGQYYKLC 170
DY ++ N + I K+D++V++F M + P +V+ +L+S + N L
Sbjct: 49 DYREILRNRLSDIIKVDDAVDLFGDMVKSRPF--PSIVEFNKLLSAVAKMNKFELVISLG 106
Query: 171 RAMRGKGFC----VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN 226
M+ G Y +N R+ + A + ++++ G+ P+IVT + +L C +
Sbjct: 107 EQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHS 166
Query: 227 GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIY 286
+I +A +L D ++ +G KP+ TF+TLI+ K +A L + M++ PDL+ Y
Sbjct: 167 KRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226
Query: 287 SILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346
+++GL K G + LL +K +VV+F++++D+ V AV + M
Sbjct: 227 GTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMET 286
Query: 347 GGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRD 406
G PNV++Y+ LI LC GR +A L +L +++ P+++T+++LID F K GKL +
Sbjct: 287 KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVE 346
Query: 407 GFSLYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMD 461
L++ MI+R + PD + +LLING + +A + F V +PN+ +NTL++
Sbjct: 347 AEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLIN 406
Query: 462 GCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTP 521
G C+ KR D V+LF M + + +T+T +I+G G SA ++F QM+ +
Sbjct: 407 GFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPT 466
Query: 522 DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLF 581
D++TYS ++HGL + L +FK ++++ + +I IYN ++ + K + A LF
Sbjct: 467 DIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF 526
Query: 582 GQLTDRGLEPDIITYNTIICGYCS 605
L+ ++PD++TYNT+I G CS
Sbjct: 527 CSLS---IKPDVVTYNTMISGLCS 547
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 151/490 (30%), Positives = 265/490 (54%)
Query: 127 KIDESVEIFAYMSDMGIYLSPDLVQ--RLMSCLVDSNSVGQYYKLCRAMRGKGFC----V 180
K+DE+V++F M + P +V+ +L+S + M G
Sbjct: 45 KLDEAVDLFGEMVKSRPF--PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYT 102
Query: 181 YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLL 240
Y ++N L R+ + A + ++++ G+ P+IVT N +L C +I A +L D ++
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162
Query: 241 LVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLK 300
+G +P+ VTF+TL++ + K +A L M+ PDL+ Y +I+GL K G
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222
Query: 301 EGNELLLTALDRG-LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSIL 359
LL +++G ++ DVV++S+V+D+ V A+ + M N G P+V +YS L
Sbjct: 223 LALNLL-NKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSL 281
Query: 360 IKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGL 419
I LC GR +A L +L R++ P+++T++SLID F K GKL + L+D MI+R +
Sbjct: 282 ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 341
Query: 420 KPDAVVCSLLINGL-MGDAL----RFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVK 474
P+ V + LING M D L + F V +P++ +NTL++G C+ K+ D ++
Sbjct: 342 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME 401
Query: 475 LFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF 534
LF M + + +T+T LI G +A ++F QM+ G+ P+++TY+ ++ GL
Sbjct: 402 LFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 461
Query: 535 KGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDII 594
K + + +F+ ++++ + PDI YN++ + K ++ LF L+ +G++PD+I
Sbjct: 462 KNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVI 521
Query: 595 TYNTIICGYC 604
YNT+I G+C
Sbjct: 522 AYNTMISGFC 531
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 155/525 (29%), Positives = 274/525 (52%)
Query: 97 TYNFFRLFRDSLGDFGCDY-SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQ--RL 153
+++FF R G DY L N + K+D++V +F M + P +++ +L
Sbjct: 31 SFSFFWR-RAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPF--PSIIEFSKL 87
Query: 154 MSCLVDSNSVGQYYKLCRAMRGKGF----CVYEFLMNGLLRKGVIENAFHMHRQVIQRGF 209
+S + N L M+ G Y L+N R+ + A + ++++ G+
Sbjct: 88 LSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGY 147
Query: 210 VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQ 269
PNIVT + +L C + +I A +L D + + G +PN VTF+TLI+ K +A
Sbjct: 148 EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMA 207
Query: 270 LYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRG-LKLDVVVFSSVMDAY 328
L + M+ PDL+ Y ++++GL K G LL +++G L+ V+++++++D
Sbjct: 208 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL-NKMEQGKLEPGVLIYNTIIDGL 266
Query: 329 VGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL 388
+ A+ + M G PNV++YS LI LC GR +A L ++ R++ P +
Sbjct: 267 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326
Query: 389 LTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL-MGDAL----RFFFQ 443
T+S+LID F K GKL + LYD M+KR + P V S LING M D L + F
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Query: 444 SVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGS 503
V P++ +NTL+ G C+ KR + +++F M + + +T+ +LI+G+ G
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446
Query: 504 LSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNV 563
A +F +M+ G+ P+++TY+ ++ GL K + + +F+ ++R+ + P I YN+
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 506
Query: 564 LLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNS 608
++ + K ++ LF L+ +G++PD++ YNT+I G+C S
Sbjct: 507 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGS 551
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 150/500 (30%), Positives = 265/500 (53%)
Query: 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173
DY ++ N + K+D+++ +F M S +L+S + L M
Sbjct: 52 DYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKM 111
Query: 174 RGKGFC----VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229
+ G Y L+N R+ I A + ++++ G+ P+IVT + +L C +I
Sbjct: 112 QRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 171
Query: 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSIL 289
+A +L D ++ +G +P+ +TF+TLI+ K +A L + M++ P+L+ Y ++
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231
Query: 290 IDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF 349
++GL K G + LL ++ +VV++S+V+D+ A+ + M N G
Sbjct: 232 VNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGV 291
Query: 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFS 409
PNVI+YS LI LC R +A L ++ R++ P+++T+++LID F K GKL +
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEK 351
Query: 410 LYDNMIKRGLKPDAVVCSLLINGL-MGDAL---RFFFQ-SVRMTLIPNLFIFNTLMDGCC 464
LYD MIKR + PD S LING M D L + F+ + PN+ +NTL++G C
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411
Query: 465 RLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVI 524
+ KR + V+LF M + + +T+T LI G +A ++F QM+ G+ P+++
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471
Query: 525 TYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQL 584
TY+ ++ GL K + + +F+ ++R+ + P I YN+++ + K ++ LF L
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531
Query: 585 TDRGLEPDIITYNTIICGYC 604
+ +G++PD+I YNT+I G+C
Sbjct: 532 SLKGVKPDVIIYNTMISGFC 551
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 145/487 (29%), Positives = 253/487 (51%)
Query: 127 KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC--VY--E 182
K D+++++F M + RL S + + LC+ M KG +Y
Sbjct: 68 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 127
Query: 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242
++N R + AF ++I+ G+ PN +T + ++ LC+ G++ A L D ++ +
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187
Query: 243 GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEG 302
G KP+++T +TL+N C K +A L + M+E P+ + Y +++ + K+G+
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247
Query: 303 NELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG 362
ELL +R +KLD V +S ++D G + A ++ M G N+I+Y+ILI G
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307
Query: 363 LCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422
C GR + L ++ R++ P+++T+S LID F K GKLR+ L+ MI RG+ PD
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD 367
Query: 423 AVVCSLLINGL-----MGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFM 477
+ + LI+G + A + V PN+ FN L++G C+ R D ++LF
Sbjct: 368 TITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFR 427
Query: 478 LMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK 537
M + + D +T+ LI+G G L+ A LF +M+ R + P+++TY ++ GL
Sbjct: 428 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNG 487
Query: 538 NISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYN 597
L +F+ +E++ + DI IYN++++ + +D A LF L +G++P + TYN
Sbjct: 488 ESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYN 547
Query: 598 TIICGYC 604
+I G C
Sbjct: 548 IMIGGLC 554
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 144/515 (27%), Positives = 268/515 (52%)
Query: 103 LFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS 162
L S+ + Y + N + K+++++++F M +P RL S + +
Sbjct: 26 LHYSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQ 85
Query: 163 VGQYYKLCRAMRGKGF--CVYEF--LMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218
C+ M G +Y ++N RK + AF + + + G+ P+ +T +
Sbjct: 86 YDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFST 145
Query: 219 ILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD 278
++ C+ G++ A +L D ++ + +P++VT STLIN C + ++ +A L + M+E
Sbjct: 146 LVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG 205
Query: 279 LVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAV 338
PD + Y +++ L K+G +L +R +K VV +S V+D+ G A+
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 265
Query: 339 QTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGF 398
++ M G +V++YS LI GLC G+ + + +++ R + P ++T+S+LID F
Sbjct: 266 SLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325
Query: 399 CKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL-----MGDALRFFFQSVRMTLIPNL 453
K GKL + LY+ MI RG+ PD + + LI+G + +A + F V P++
Sbjct: 326 VKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDI 385
Query: 454 FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQ 513
++ L++ C+ KR D ++LF + + P+ IT+ L+ G G L++A LF +
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE 445
Query: 514 MLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECN 573
M+ RG+ P V+TY ++ GL ++ L +F+ M+++ + I IYN++++ +
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 505
Query: 574 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNS 608
+D A LF L+D+G++PD++TYN +I G C S
Sbjct: 506 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 619 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 2e-26
Identities = 91/413 (22%), Positives = 182/413 (44%), Gaps = 54/413 (13%)
Query: 200 MHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFC 259
MH V++ GF ++ CN +++ G G A +F + + V+++ +I+ +
Sbjct: 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYE 365
Query: 260 KEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVV 319
K +KA + Y LM + ++ PD I + ++ G L G +L A +GL VV
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425
Query: 320 VFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQV 379
V +++++ Y + +A++ + + +VIS++ +I GL R EA F Q+
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQM 481
Query: 380 LIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALR 439
L+ L+P+ +T + + + G L G ++ ++++ G+ D
Sbjct: 482 LLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG---------------- 524
Query: 440 FFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIA 499
F+ N L+D R R F + DV++ +L+ G
Sbjct: 525 --------------FLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYV 565
Query: 500 SQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERN-GVAPDI 558
+ G S A+ LF +M++ G+ PD +T+ +++ + ++ GL F ME + P++
Sbjct: 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625
Query: 559 AIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCLI 611
Y ++++L + L A ++ + PD + + LN+C I
Sbjct: 626 KHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGAL------LNACRI 669
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-23
Identities = 102/480 (21%), Positives = 204/480 (42%), Gaps = 54/480 (11%)
Query: 114 DYSFLIENYVRI---GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV--GQYYK 168
I+ Y R+ G+I + +++ M G L+D + + +++K
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRG--------------LLDMDKIYHAKFFK 414
Query: 169 LCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQ 228
C+ + ++ AF + + P + T N ++ +C + Q
Sbjct: 415 ACKK------------------QRAVKEAFRFAKLIR----NPTLSTFNMLMS-VCASSQ 451
Query: 229 IGNASSLFDVLLLV---GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLII 285
+ VL LV G K + ++TLI+ K K++ F++++ M+ + ++
Sbjct: 452 --DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509
Query: 286 YSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRML 345
+ LIDG +AG++ + + +K D VVF++++ A G V RA M
Sbjct: 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 346 NGG--FLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGK 403
P+ I+ L+K G++ A ++ + ++ + Y+ ++ + G
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 404 LRDGFSLYDNMIKRGLKPDAVVCSLLIN--GLMGDALRFF--FQSVRMTLI-PNLFIFNT 458
S+YD+M K+G+KPD V S L++ G GD + F Q R I +++
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
Query: 459 LMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRG 518
LM C K ++L+ + ++P V T LI + L A+ + +M + G
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 519 LTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAAL 578
L P+ ITYS ++ + + VGL + + +G+ P++ + + + ++ AL
Sbjct: 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-23
Identities = 92/455 (20%), Positives = 174/455 (38%), Gaps = 88/455 (19%)
Query: 162 SVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPN-------IV 214
+V + ++ + +R + LM+ I+ A + R V + G + I
Sbjct: 421 AVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS 480
Query: 215 TCNKILKRLCINGQIGNASSLFDVL---LLVGPKPNVVTFSTLINAFCKEAKLEKAFQLY 271
TC K G ++F+V + G + NV TF LI+ + ++ KAF Y
Sbjct: 481 TCAKS----------GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 272 NLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELL--LTALDRGLKLDVVVFSSVMDAYV 329
+M ++ PD ++++ LI ++G + ++L + A + D + ++M A
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 330 GIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLL 389
G V RA + Y + Y+I + Q+G A ++ + + ++P +
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 390 TYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTL 449
+S+L+D +G L F + + K+G+K V S
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS---------------------- 688
Query: 450 IPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAIL 509
+LM C K ++L+ I+ I
Sbjct: 689 --------SLMGACSNAKNWKKALELY----------------EDIKSI----------- 713
Query: 510 LFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLI 569
L P V T +A+I L +G + L + M+R G+ P+ Y++LL
Sbjct: 714 --------KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765
Query: 570 KECNLDAALKLFGQLTDRGLEPDIITYNTIICGYC 604
++ + D L L Q + G++P+++ I G C
Sbjct: 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 4e-22
Identities = 93/408 (22%), Positives = 178/408 (43%), Gaps = 56/408 (13%)
Query: 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276
N +L G++ +A +F + P+ ++ +++ L+ + K ++A LY+ M+
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 277 MDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGR 336
+ PD+ + ++ L G E+ + G +LDV V ++++ YV GDV
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 337 AVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLID 396
A +DRM + IS++ +I G + G +E LF + ++P L+T +S+I
Sbjct: 241 ARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 397 GFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLIN-----GLMGDALRFFFQSVRMTLIP 451
G R G ++ ++K G D VC+ LI G G+A + F
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF---------- 346
Query: 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLF 511
+ M+ + D ++ T +I G G A+ +
Sbjct: 347 ------SRME--TK---------------------DAVSWTAMISGYEKNGLPDKALETY 377
Query: 512 FQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKE 571
M + ++PD IT ++++ ++ VG+ + +L ER G+ + + N L+ M K
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 572 CNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCLIDGYFKSQI 619
+D AL++F + ++ D+I++ +II G N C F Q+
Sbjct: 438 KCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQM 481
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-17
Identities = 111/532 (20%), Positives = 218/532 (40%), Gaps = 61/532 (11%)
Query: 128 IDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNG 187
++E + + L L ++S V + + + M + + L+ G
Sbjct: 102 VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG 161
Query: 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV---GP 244
+ G + A ++ +++ G P++ T +L R C G I + + +V V G
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL-RTC--GGIPDLARGREVHAHVVRFGF 218
Query: 245 KPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNE 304
+ +V + LI + K + A +++ M D I ++ +I G F+ G EG E
Sbjct: 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLE 274
Query: 305 LLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLC 364
L T + + D++ +SV+ A +GD + + ++ GF +V + LI+
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 365 QQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV 424
G EA +F ++ + ++++++I G+ K+G Y M + + PD +
Sbjct: 335 SLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 425 V-------CSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFM 477
C+ L + +G L + LI + + N L++ + K +++F
Sbjct: 391 TIASVLSACACLGDLDVGVKLHELAERKG--LISYVVVANALIEMYSKCKCIDKALEVFH 448
Query: 478 LMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAI------IH 531
+ + DVI+ T +I G+ A L+FF+ + L P+ +T A I
Sbjct: 449 NIP----EKDVISWTSIIAGLRLNNRCFEA-LIFFRQMLLTLKPNSVTLIAALSACARIG 503
Query: 532 GLFKGKNI-------SVGLHMF-----------------KLMERNGVAPDIAIYNVLLNM 567
L GK I +G F + N D+ +N+LL
Sbjct: 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTG 563
Query: 568 LIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCLIDG--YFKS 617
+ A++LF ++ + G+ PD +T+ +++C CS + + G YF S
Sbjct: 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRSGMVTQGLEYFHS 614
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 93/424 (21%), Positives = 160/424 (37%), Gaps = 51/424 (12%)
Query: 204 VIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK 263
V GF P+ N++L G + +A LFD + P+ N+ ++ T+I
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGN 204
Query: 264 LEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSS 323
+AF L+ M E + + +++ G + G +L L G+ D V +
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 324 VMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRR 383
++D Y GD+ A +D M ++++ ++ G G EA L+ ++
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 384 LEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLIN-----GLMGDAL 438
+ T+S +I F + L + +I+ G D V + L++ G M DA
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA- 379
Query: 439 RFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGI 498
R F RM NL +N L+ G R T V++F M + P+ +T ++
Sbjct: 380 RNVFD--RMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
Query: 499 ASQGSLSSAILLFFQMLKR--GLTPDVITYSAIIH------------------------- 531
G LS FQ + + P + Y+ +I
Sbjct: 437 RYSG-LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495
Query: 532 ---GLFKGKNISVGLHMFKLMERN--GVAPD-IAIYNVLLNMLIKECNLDAALKLFGQLT 585
L I L + +L G+ P+ + Y VLLN+ A K+ L
Sbjct: 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
Query: 586 DRGL 589
+GL
Sbjct: 556 RKGL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-14
Identities = 63/291 (21%), Positives = 128/291 (43%), Gaps = 25/291 (8%)
Query: 187 GLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP 246
G L GV +H ++G + +V N +++ I A +F + P+
Sbjct: 403 GDLDVGV-----KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI----PEK 453
Query: 247 NVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELL 306
+V++++++I + +A ++ M + L P+ + + + G L G E+
Sbjct: 454 DVISWTSIIAGLRLNNRCFEAL-IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512
Query: 307 LTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQ 366
L G+ D + ++++D YV G + A ++ +V+S++IL+ G
Sbjct: 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAH 567
Query: 367 GRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNM-----IKRGLKP 421
G+ A LF +++ + P +T+ SL+ +SG + G + +M I LK
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
Query: 422 DAVVCSLLIN-GLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATD 471
A V LL G + +A F +M + P+ ++ L++ CR+ R +
Sbjct: 628 YACVVDLLGRAGKLTEAYNFI---NKMPITPDPAVWGALLNA-CRIHRHVE 674
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 2e-14
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 246 PNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFK 295
P+VVT++TLI+ +CK+ K+E+A +L+N M + + P++ YSILIDGL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 4e-13
Identities = 71/352 (20%), Positives = 148/352 (42%), Gaps = 42/352 (11%)
Query: 252 STLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311
++ + A C +LE+A +L M E+ + D Y L ++EG+ + AL
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 312 RGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVE 371
L V + ++++ +V G++ A + +M ++ S+++L+ G + G E
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDE 170
Query: 372 ACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLIN 431
A L+ ++L + P + T+ ++ L G ++ ++++ G + D V + LI
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI- 229
Query: 432 GLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITH 491
T+ C + A +F M + D I+
Sbjct: 230 --------------------------TMYVKCGDVVSAR---LVFDRMP----RRDCISW 256
Query: 492 TVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMER 551
+I G G + LFF M + + PD++T +++I + +G M + +
Sbjct: 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 552 NGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGY 603
G A D+++ N L+ M + + A K+F ++ + D +++ +I GY
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 7e-13
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 386 PSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL 433
P ++TY++LIDG+CK GK+ + L++ M KRG+KP+ S+LI+GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 9e-13
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 351 PNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCK 400
P+V++Y+ LI G C++G++ EA LF ++ R ++P++ TYS LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 556 PDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYC 604
PD+ YN L++ K+ ++ ALKLF ++ RG++P++ TY+ +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 93/418 (22%), Positives = 182/418 (43%), Gaps = 46/418 (11%)
Query: 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG---- 177
+V+ G + ++ +F M + + ++ LVD+ + + + L R M G
Sbjct: 168 HVKCGMLIDARRLFDEMPERNLAS----WGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223
Query: 178 ---FCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI-VTCNKI-LKRLCINGQIGNA 232
F V GL G +H V++ G V + V+C I + C G I +A
Sbjct: 224 PRTFVVMLRASAGL---GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC--GDIEDA 278
Query: 233 SSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDG 292
+FD + P+ V +++++ + E+A LY M + + D +SI+I
Sbjct: 279 RCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 293 LFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLP- 351
+ L+ + + G LD+V ++++D Y G + A +DRM P
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PR 388
Query: 352 -NVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSL 410
N+IS++ LI G GR +A +F +++ + P+ +T+ +++ SG G+ +
Sbjct: 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
Query: 411 YDNMIK-RGLKPDAVVCSLLI-----NGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCC 464
+ +M + +KP A+ + +I GL+ +A R P + ++ L+ C
Sbjct: 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI---RRAPFKPTVNMWAALLTA-C 504
Query: 465 RLKRATDTVKLF--MLMGMYNIKPDVI-THTVLIRGIASQGSLSSAILLFFQMLKRGL 519
R+ + + +L L GM P+ + + VL+ S G + A + + ++GL
Sbjct: 505 RIHKNLELGRLAAEKLYGM---GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-11
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 317 DVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQ 365
DVV +++++D Y G V A++ ++ M G PNV +YSILI GLC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 4e-11
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 211 PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK 260
P++VT N ++ C G++ A LF+ + G KPNV T+S LI+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 5e-11
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 486 PDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFK 535
PDV+T+ LI G +G + A+ LF +M KRG+ P+V TYS +I GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-10
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 451 PNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRG 497
P++ +NTL+DG C+ + + +KLF M IKP+V T+++LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 521 PDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIK 570
PDV+TY+ +I G K + L +F M++ G+ P++ Y++L++ L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 1e-08
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 243 GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLM 274
G KP+VVT++TLI+ C+ ++++A +L + M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 3e-07
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 348 GFLPNVISYSILIKGLCQQGRLVEACGLFGQ 378
G P+V++Y+ LI GLC+ GR+ EA L +
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-07
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 390 TYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDA 423
TY++LIDG CK+G++ + L+ M +RG++PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 71/402 (17%), Positives = 159/402 (39%), Gaps = 53/402 (13%)
Query: 36 NAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMV---I 92
I+ L+ N A F+ + D D F M+
Sbjct: 193 GTIIGGLVDAGNYREAFALFR-----------------EMWEDGSDAEPRTFVVMLRASA 235
Query: 93 QFGKTYNFFRLFRDSLGDFGCDYSF----LIENYVRIGKIDESVEIFAYMSDMGIYLSPD 148
G +L L +F LI+ Y + G I+++ +F M +
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNS 295
Query: 149 LVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLL----RKGVIENAFHMHRQV 204
++ ++ YY++ + G + +F + ++ R ++E+A H +
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDS----GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351
Query: 205 IQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKL 264
I+ GF +IV ++ G++ +A ++FD + P+ N+++++ LI + +
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM----PRKNLISWNALIAGYGNHGRG 407
Query: 265 EKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNEL-LLTALDRGLKLDVVVFSS 323
KA +++ M+ + P+ + + ++ +G ++G E+ + + +K + ++
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467
Query: 324 VMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSIL-----IKGLCQQGRLVEACGLFGQ 378
+++ G G + Y + F P V ++ L I + GRL A L+G
Sbjct: 468 MIELL---GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA-AEKLYG- 522
Query: 379 VLIRRLEPSLL-TYSSLIDGFCKSGKLRDGFSLYDNMIKRGL 419
+ P L Y L++ + SG+ + + + + ++GL
Sbjct: 523 -----MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD 282
VT++TLI+ CK ++E+A +L+ M E + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 55/316 (17%), Positives = 119/316 (37%), Gaps = 39/316 (12%)
Query: 290 IDGLFKAGRLKEGNELLLTALDRG-LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348
I+ L GR +E EL L + ++++A + + + Y + + G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 349 FLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGF 408
F P+ + ++ + G L++A LF ++ R +L ++ ++I G +G R+ F
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAF 209
Query: 409 SLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKR 468
+L+ M + G + +++ G Q + CC LK
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH----------------CCVLK- 252
Query: 469 ATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSA 528
G+ D LI + G + A +F M ++ + +++
Sbjct: 253 ----------TGVVG---DTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNS 295
Query: 529 IIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRG 588
++ G L ++ M +GV+ D +++++ + + L+ A + L G
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 589 LEPDIITYNTIICGYC 604
DI+ ++ Y
Sbjct: 356 FPLDIVANTALVDLYS 371
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-06
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 382 RRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNM 414
+ L+P ++TY++LIDG C++G++ + L D M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 390 TYSSLIDGFCKSGKLRDGFSLYDNMIKRGL 419
TY+SLI G+CK+GKL + L+ M ++G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 524 ITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDI 558
+TY+ +I GL K + L +FK M+ G+ PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 277 MDLVPDLIIYSILIDGLFKAGRLKEGNELL 306
L PD++ Y+ LIDGL +AGR+ E ELL
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDL 279
VT+++LI+ +CK KLE+A +L+ M E +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 4e-04
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 587 RGLEPDIITYNTIICGYC 604
+GL+PD++TYNT+I G C
Sbjct: 1 KGLKPDVVTYNTLIDGLC 18
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 560 IYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDI 593
YN L++ L K ++ AL+LF ++ +RG+EPD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 184 LMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLC 224
L++G +KG +E A + ++ +RG PN+ T + ++ LC
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 454 FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDV 488
+NTL+DG C+ R + ++LF M I+PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 390 TYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKP 421
TY++L+ K+G ++ + M GLKP
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (81), Expect = 0.004
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 517 RGLTPDVITYSAIIHGLFKGKNISVGLHMFKLME 550
+GL PDV+TY+ +I GL + + + + ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 354 ISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPS 387
++Y+ LI GLC+ GR+ EA LF ++ R +EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 619 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.98 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.98 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.88 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.82 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.65 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.57 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.56 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.52 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.51 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.39 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.29 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.28 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.27 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.26 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.18 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.15 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.12 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.12 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.12 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.11 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.09 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.06 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.05 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.03 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.94 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.92 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.92 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.91 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.9 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.9 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.89 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.88 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.84 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.82 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.8 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.77 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.76 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.76 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.72 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.71 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.55 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.49 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.48 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.38 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.37 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.36 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.33 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.31 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.28 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.27 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.26 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.21 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.18 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.16 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.14 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.12 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.07 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.02 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.02 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.01 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.01 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.01 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.99 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.94 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.93 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.93 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.91 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.88 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.83 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.83 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.83 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.82 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.82 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.81 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.81 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.78 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.77 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.76 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.74 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.73 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.7 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.67 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.65 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.63 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.59 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.58 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.53 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.53 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.52 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.49 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.39 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.39 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.38 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.35 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.33 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.29 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.26 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.25 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.17 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.12 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.11 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.08 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.03 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.03 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.98 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.98 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.98 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.91 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.88 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.87 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.82 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.79 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.72 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.71 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.71 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.65 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.65 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.65 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.64 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.54 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.51 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.46 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.43 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.38 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.29 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.26 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.24 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.24 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.12 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.11 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.09 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.09 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.06 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.99 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.97 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.84 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.79 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.77 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.72 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.65 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.63 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.6 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.58 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.41 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.4 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.07 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.05 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.91 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.88 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.84 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.78 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.57 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.49 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.49 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.35 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.2 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.19 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.15 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.13 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.13 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.08 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.75 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.65 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.62 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.43 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.24 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.24 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.06 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.06 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.82 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.29 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.24 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.2 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.11 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.07 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.84 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 91.69 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.51 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.47 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.27 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.12 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.98 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.78 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.77 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.73 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.32 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 90.3 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 90.12 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.92 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 89.91 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 89.89 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.77 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.7 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.53 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.5 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.33 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.24 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.18 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 89.05 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.49 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.28 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.18 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 88.13 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 87.9 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.7 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.54 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.26 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 87.13 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.11 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.41 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.38 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 86.25 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.99 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.88 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.8 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 85.79 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.34 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.11 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.02 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.96 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.91 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.65 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.3 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.21 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.9 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 83.55 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.35 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.32 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.12 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.91 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.29 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.24 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 81.98 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 81.96 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.96 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.56 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 81.43 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 80.9 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 80.69 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.36 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=581.93 Aligned_cols=554 Identities=17% Similarity=0.256 Sum_probs=521.7
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 30 LQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
.+....+.++..+.+.|+++.|.++|+.+. +++..+|+.++..+.+.|++++|..+|++|...+. .
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~-------------~ 184 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV-------------R 184 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHHHHHHhcCC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------------C
Confidence 455577889999999999999999999998 57899999999999999999999999999987532 2
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLL 189 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 189 (619)
++..+|+.++.+|.+.+++..+.+++..+.+.|..|++.+++.++.+|++.|++++|..+|++|...+..+|+.++.+|+
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~ 264 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 23348999999999999999999999999999999999999999999999999999999999998766666999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047659 190 RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQ 269 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 269 (619)
+.|++++|+++|.+|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.|..||..+|++++.+|++.|++++|.+
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 047659 270 LYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF 349 (619)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (619)
+|++|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|+
T Consensus 345 vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 345 VFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred HHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 9999964 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 047659 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLL 429 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 429 (619)
.|+..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..++..+
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 99999999999999999999999999999864 5888999999999999999999999999986 589999999999
Q ss_pred Hhc-----cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 047659 430 ING-----LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSL 504 (619)
Q Consensus 430 l~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 504 (619)
+.+ .++.+.+++..+.+.|..++..++++|+++|+++|+.++|..+|+.+ .||..+||++|.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 986 88999999999999999999999999999999999999999999987 58999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047659 505 SSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLME-RNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQ 583 (619)
Q Consensus 505 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (619)
++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 689999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCcccccch
Q 047659 584 LTDRGLEPDIITYNTIICGYCSLNSCLIDGY 614 (619)
Q Consensus 584 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 614 (619)
|. +.||..+|++|+.+|...|..++.+.
T Consensus 651 m~---~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 651 MP---ITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred CC---CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 84 79999999999999998888776543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=572.90 Aligned_cols=569 Identities=16% Similarity=0.201 Sum_probs=427.2
Q ss_pred cCChhhHHHHHHHHHccCCchhHHHHHHHhhc---CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh------
Q 047659 29 DLQFNQANAILANLIKTNNPTPAIQFFKWTHN---CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN------ 99 (619)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------ 99 (619)
..++...+.++..+.+.|++++|+.+|+.+.. +++..++..++..+.+.+.++.|..++..++...+....
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 34566789999999999999999999999987 678888999999999999999999999988876543211
Q ss_pred ------------HHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047659 100 ------------FFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYY 167 (619)
Q Consensus 100 ------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 167 (619)
+.+.+....+++..+|+.++.+|.+.|++++|.++|++|...|..||..+|+.++.++.+.++...+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 11122222233444666777777777777777777777666666666667766776666666666666
Q ss_pred HHHHHHhhCCc--cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 047659 168 KLCRAMRGKGF--CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG 243 (619)
Q Consensus 168 ~~~~~~~~~~~--~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 243 (619)
+++..+.+.+. ++ ++.++.+|++.|+++.|.++|+.|. .||..+||.+|.+|++.|++++|.++|++|...|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 66666666654 32 6667777777777777777776664 3566667777777777777777777777777666
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047659 244 PKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSS 323 (619)
Q Consensus 244 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 323 (619)
+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 6777777777777777777777777777777766777777777777777777777777777776664 346666777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047659 324 VMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGK 403 (619)
Q Consensus 324 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 403 (619)
++.+|.+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 77777777777777777777776667777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHhc-----cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 047659 404 LRDGFSLYDNMIKRGLKPDAVVCSLLING-----LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFML 478 (619)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 478 (619)
+++|.++|+.|.+ +|..+|+.++.+ ..++|+.+|++|.. +..||..+|+.++.+|++.|+.+.+.+++..
T Consensus 440 ~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 440 IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 7777777766653 455666666655 56677777777764 4677777777777777777777777777777
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCH
Q 047659 479 MGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDI 558 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 558 (619)
+.+.|+.+|..++|+++.+|++.|++++|..+|+.+ .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 777777777777788888888888888888888776 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhhcCcccccchh
Q 047659 559 AIYNVLLNMLIKECNLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNSCLIDGYF 615 (619)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 615 (619)
.||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++|+.+|++.|+.+-+..+
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999 689999999999999999999987665433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-67 Score=549.44 Aligned_cols=527 Identities=17% Similarity=0.249 Sum_probs=481.2
Q ss_pred hHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCCh
Q 047659 50 PAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKI 128 (619)
Q Consensus 50 ~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 128 (619)
.+....++... .++...+..+...+.+.|++++|.++|+.|...+..+++.. .+..++..|.+.|.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v------------~~~~li~~~~~~g~~ 422 (1060)
T PLN03218 355 NSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI------------YHAKFFKACKKQRAV 422 (1060)
T ss_pred hhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH------------HHHHHHHHHHHCCCH
Confidence 34444444444 66777888888999999999999999999988765544432 677888999999999
Q ss_pred hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cc--hHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 129 DESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CV--YEFLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 129 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~--~~~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
++|..+|+.|. .|+..+|+.++.+|++.|+++.|.++|+.|.+.+. |. |+.++.+|++.|+++.|.++|++|
T Consensus 423 ~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 423 KEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred HHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 99999999984 48999999999999999999999999999999886 44 999999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC
Q 047659 205 IQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME--MDLVPD 282 (619)
Q Consensus 205 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~~ 282 (619)
.+.|+.||..+|+.+|.+|++.|++++|.++|+.|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 578999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 283 LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG 362 (619)
Q Consensus 283 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 362 (619)
..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhc-----cHHHH
Q 047659 363 LCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLING-----LMGDA 437 (619)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~a 437 (619)
|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+ ..++|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----c------------
Q 047659 438 LRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIAS----Q------------ 501 (619)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------------ 501 (619)
.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++..|.+ .
T Consensus 739 lelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~ 818 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDS 818 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999866432 1
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 047659 502 -------GSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNL 574 (619)
Q Consensus 502 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 574 (619)
+..+.|..+|++|.+.|+.||..||+.++.++...+..+.+..+++.|...+..|+..+|+++++++.+. .
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~ 896 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--D 896 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--h
Confidence 1246799999999999999999999999988888889999999999998888889999999999998432 4
Q ss_pred HHHHHHHHHHHhCCCCCCHH
Q 047659 575 DAALKLFGQLTDRGLEPDII 594 (619)
Q Consensus 575 ~~A~~~~~~~~~~g~~p~~~ 594 (619)
++|..++++|...|+.|+..
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 68999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-67 Score=547.87 Aligned_cols=495 Identities=18% Similarity=0.318 Sum_probs=470.2
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHh
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLR 190 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 190 (619)
...|..+...+++.|++++|.++|+.|.+.+.. ++...+..++..|.+.|..++|..+++.|...+..+|+.++.+|++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 337888999999999999999999999998854 5667778899999999999999999999987222349999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 271 YNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD--RGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 271 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999986 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047659 349 FLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSL 428 (619)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 428 (619)
+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-----cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047659 429 LING-----LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGS 503 (619)
Q Consensus 429 ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 503 (619)
++.+ .+++|..+|+.|...+..|+..+|++||.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 9987 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----c-------------------CChHHHHHHHHHHHHCCCCcCHHH
Q 047659 504 LSSAILLFFQMLKRGLTPDVITYSAIIHGLFK----G-------------------KNISVGLHMFKLMERNGVAPDIAI 560 (619)
Q Consensus 504 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~ 560 (619)
+++|.+++.+|.+.|+.||..+|++++..|.+ + +..+.|..+|++|.+.|+.||..|
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999976542 1 124679999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 047659 561 YNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606 (619)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 606 (619)
|+.++.++++.+..+.+..+++.|...+..|+..+|++||+++++.
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 9999988889999999999999999888999999999999999754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=492.62 Aligned_cols=476 Identities=19% Similarity=0.298 Sum_probs=443.9
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
..+...|..++..+.+.|++++|..+|+.+....+..++ ..+|+.++.++.+.++++.|.+++..|.+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~------------~~t~~~ll~a~~~~~~~~~a~~l~~~m~~ 151 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP------------ASTYDALVEACIALKSIRCVKAVYWHVES 151 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345568999999999999999999999999875443332 23899999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
.|..||+.+++.++..|++.|++++|.++|++|.+.+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++
T Consensus 152 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 99999999999999999999999999999999987555559999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047659 221 KRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLK 300 (619)
Q Consensus 221 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 300 (619)
.+++..|..+.+.+++..+.+.|..||..+|++++.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|+.+
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999964 68999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 301 EGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVL 380 (619)
Q Consensus 301 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 380 (619)
+|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 047659 381 IRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLM 460 (619)
Q Consensus 381 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 460 (619)
.||..+|+++|.+|++.|+.++|.++|++|.+.|+.| |..+|++++
T Consensus 388 ----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P------------------------------d~~T~~~ll 433 (697)
T PLN03081 388 ----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP------------------------------NHVTFLAVL 433 (697)
T ss_pred ----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------CHHHHHHHH
Confidence 4689999999999999999999999999999886654 677899999
Q ss_pred HHHHhcCChhHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh
Q 047659 461 DGCCRLKRATDTVKLFMLMGM-YNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNI 539 (619)
Q Consensus 461 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 539 (619)
.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++++.+|...|++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNL 510 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999975 699999999999999999999999999998875 5789999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 047659 540 SVGLHMFKLMERNGVAP-DIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEP 591 (619)
Q Consensus 540 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 591 (619)
+.|.++++++.+. .| +..+|..++..|++.|++++|.++++.|.+.|+..
T Consensus 511 ~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 511 ELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999764 45 46799999999999999999999999999998753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-59 Score=487.91 Aligned_cols=502 Identities=16% Similarity=0.246 Sum_probs=451.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
.+..++..+.+.|++++|+++|+++.. .++..+|..++..+.+.++++.|..++..+...+-.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~------------- 155 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE------------- 155 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------------
Confidence 688999999999999999999999986 457788999999999999999999999999875332
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cc--hHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CV--YEFLM 185 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~--~~~l~ 185 (619)
++..+|+.++..|.+.|++++|.++|++| +.||..+|+.++.+|++.|++++|+++|++|.+.++ +. |..++
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 12239999999999999999999999999 468999999999999999999999999999998887 33 99999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLE 265 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 265 (619)
.+++..|..+.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|++| ..+|..+||+++.+|++.|+++
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999999999999 4679999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047659 266 KAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRML 345 (619)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (619)
+|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 047659 346 NGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVV 425 (619)
Q Consensus 346 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 425 (619)
+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.
T Consensus 388 ~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~-------- 455 (697)
T PLN03081 388 R----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN-------- 455 (697)
T ss_pred C----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh--------
Confidence 4 7999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred HHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 047659 426 CSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLS 505 (619)
Q Consensus 426 ~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 505 (619)
.++.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++
T Consensus 456 ---------------------~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 456 ---------------------HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred ---------------------cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence 133457788999999999999999999998876 46899999999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH-HHHHH-------HHHH----HHcC
Q 047659 506 SAILLFFQMLKRGLTP-DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA-IYNVL-------LNML----IKEC 572 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l-------~~~~----~~~g 572 (619)
.|..+++++.+ +.| +..+|..++..|.+.|++++|.++++.|.+.|+...+. +|..+ +..- ....
T Consensus 512 ~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 512 LGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 99999999975 455 46799999999999999999999999999998753322 22111 0000 0011
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH
Q 047659 573 NLDAALKLFGQLTDRGLEPDII 594 (619)
Q Consensus 573 ~~~~A~~~~~~~~~~g~~p~~~ 594 (619)
-++...++..+|.+.|+.||..
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcc
Confidence 2455667888899999999843
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=312.96 Aligned_cols=561 Identities=13% Similarity=0.060 Sum_probs=378.7
Q ss_pred HHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH--------------
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR-------------- 102 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------- 102 (619)
...+...|++++|...|+.+.. |.+...+..++.++...|++++|...+++++...|.+...+.
T Consensus 302 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3444556666666666666655 555555566666666666666666666666665554433110
Q ss_pred ---HHH---hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 103 ---LFR---DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 103 ---~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
.+. ...|.....+..++..+...|++++|++.|+.+.+..+. +......++..+.+.|++++|..+++.+...
T Consensus 382 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 000 001111124555555666666666666666666554333 3334445555666666666666666666655
Q ss_pred Cc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH
Q 047659 177 GF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFST 253 (619)
Q Consensus 177 ~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (619)
.| ++ +..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++.+...++ .+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHH
Confidence 55 22 6666666666667777777666666653 44455556666666666777777777776665433 25556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 047659 254 LINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGD 333 (619)
Q Consensus 254 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (619)
+...+.+.|++++|...++.+...+. .+...+..++..+...|++++|..+++.+.+.. +.+...|..+...+...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 66667677777777777777665432 245566667777777777777777777776543 3366677777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047659 334 VGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 413 (619)
+++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+... .+..++..+...+...|++++|..+++.
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776643 33556677777777777777777777777776532 2456677777777778888888888877
Q ss_pred HHHcCCCCCHhhHHHHH-----hccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 047659 414 MIKRGLKPDAVVCSLLI-----NGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDV 488 (619)
Q Consensus 414 ~~~~~~~~~~~~~~~ll-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 488 (619)
+.+... .+...+..+. .+..++|...+..+....+ +..++..+..++.+.|++++|...++.+.+.. +.+.
T Consensus 695 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~ 770 (899)
T TIGR02917 695 LQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA 770 (899)
T ss_pred HHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 776532 2222222221 2378888888888877653 33666778888888888888888888887654 5677
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 047659 489 ITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNML 568 (619)
Q Consensus 489 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 568 (619)
..+..+...|...|++++|..+|+++.+.. +.+..+++.+...+...|+ .+|+.+++++.+.. +.+..++..+...+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 788888888888999999999999988764 5577788888889999888 77999999888753 33566788888899
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcccccch
Q 047659 569 IKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCLIDGY 614 (619)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 614 (619)
...|++++|.+.++++.+.+. .++.++..+..++++.|....+..
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999998653 388999999999999998876644
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=315.06 Aligned_cols=536 Identities=13% Similarity=0.058 Sum_probs=437.1
Q ss_pred HHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH-----------
Q 047659 36 NAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR----------- 102 (619)
Q Consensus 36 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------- 102 (619)
..+...+.+.|++++|+..++.+.. +.++..+..++.++.+.|++++|...|+++...+|.......
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 3344444555555555555555544 444445555555555555555555555555555444332210
Q ss_pred ------HHH---hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 103 ------LFR---DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 103 ------~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
.+. ...|........++..+.+.|++++|..+++.+....+ +++..+..++.++...|++++|.+.|+++
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 000 11222333677888999999999999999999988654 47889999999999999999999999999
Q ss_pred hhCCcc-c--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh
Q 047659 174 RGKGFC-V--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVT 250 (619)
Q Consensus 174 ~~~~~~-~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 250 (619)
.+..|+ . +..++..+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++...++ .+...
T Consensus 492 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 569 (899)
T TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEP 569 (899)
T ss_pred HhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhH
Confidence 998883 2 8888999999999999999999999886 66788899999999999999999999999987644 36777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047659 251 FSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVG 330 (619)
Q Consensus 251 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 330 (619)
+..++..+...|++++|.++++.+.+.. +.+..+|..+..++...|++++|...++.+.+... .+...+..+...+..
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 8889999999999999999999998753 44788999999999999999999999999988753 367788899999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 047659 331 IGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSL 410 (619)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 410 (619)
.|++++|...++++.+.. +.+..++..+...+...|++++|.++++.+..... .+...+..+...+.+.|++++|...
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998763 44688899999999999999999999999988753 4677788889999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHh-----ccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 047659 411 YDNMIKRGLKPDAVVCSLLIN-----GLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIK 485 (619)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~ll~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 485 (619)
+..+...+ |+..++..+.. +..++|...+..+.+..+ .+...+..+...|...|+.++|...|+.+.+.. +
T Consensus 726 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p 801 (899)
T TIGR02917 726 YRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-P 801 (899)
T ss_pred HHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-C
Confidence 99998874 33333322222 288999999999887654 378889999999999999999999999998875 5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047659 486 PDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLL 565 (619)
Q Consensus 486 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 565 (619)
++...++.+...+...|+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++++++.+.+.. +..++..+.
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 878 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLA 878 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHH
Confidence 678899999999999999 88999999998753 345667788899999999999999999999997644 889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 047659 566 NMLIKECNLDAALKLFGQLT 585 (619)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~ 585 (619)
.++.+.|++++|.+++++|+
T Consensus 879 ~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 879 LALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-26 Score=251.59 Aligned_cols=138 Identities=12% Similarity=0.049 Sum_probs=101.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIH 531 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 531 (619)
+...+..+...+.+.|+.++|+..|+...... +.+...+..++..+...|++++|++.++.+.+.. +.+..++..+..
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~ 679 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVAL 679 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHH
Confidence 45566777888888888888888888887764 4567778888888888888888888888777542 234455666777
Q ss_pred HHHccCChHHHHHHHHHHHHCCC--Cc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCC
Q 047659 532 GLFKGKNISVGLHMFKLMERNGV--AP---DIAIYNVLLNMLIKECNLDAALKLFGQLTD-RGLEP 591 (619)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p 591 (619)
++...|++++|.++++.+..... .| +...+..+...+...|++++|++.|++... .|+.|
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 78888888888888888876422 12 224566667788888888888888888763 44443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-25 Score=247.84 Aligned_cols=566 Identities=13% Similarity=0.053 Sum_probs=412.7
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh--hc
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD--SL 108 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~ 108 (619)
..+...+..+...++.+.|.+.++.+.. |.++.++...+.++.+.|+.++|.+.+++..+..|.+......... ..
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 3577888888999999999999999988 8999999999999999999999999999999999998775332211 12
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD-LVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFL 184 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l 184 (619)
++.......++..+.+.|++++|++.|+.+.+.+++ +.. ............|++++|++.++++.+..| ++ +..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 233334567778889999999999999999876544 332 222222223346889999999999999988 33 7788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--------------------------------CChhhH----------------
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQRGFV--------------------------------PNIVTC---------------- 216 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~---------------- 216 (619)
...+...|+.++|++.++++.+.... |+....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 88888999999999999887653200 000000
Q ss_pred -----HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH----
Q 047659 217 -----NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP-DLIIY---- 286 (619)
Q Consensus 217 -----~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~---- 286 (619)
......+...|++++|+..|++.++..+. +...+..+..++.+.|++++|+..|++..+..... ....+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 01133456679999999999998886443 67788889999999999999999999988754322 11111
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 287 --------SILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSI 358 (619)
Q Consensus 287 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (619)
......+.+.|++++|...++++.+.... +...+..+...+...|++++|.+.|++..+.. +.+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 12234567889999999999999987543 66777788899999999999999999988753 122323222
Q ss_pred H------------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047659 359 L------------------------------------------IKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLID 396 (619)
Q Consensus 359 l------------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 396 (619)
+ ...+...|++++|.+.+++..+.... +...+..+..
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~ 503 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 2 23345678888888888888876433 4556677888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHh--hHH-HHH---hccHHHHHHHHHHHHhCCCCCCHh---------hHHHHHH
Q 047659 397 GFCKSGKLRDGFSLYDNMIKRGLKPDAV--VCS-LLI---NGLMGDALRFFFQSVRMTLIPNLF---------IFNTLMD 461 (619)
Q Consensus 397 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-~ll---~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~ 461 (619)
.|.+.|++++|...++++.+. .|+.. .+. .+. ....++|+..++.+......++.. .+..+..
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 888999999999999888765 23222 111 111 126777877777654332222211 1234566
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHH
Q 047659 462 GCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISV 541 (619)
Q Consensus 462 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 541 (619)
.+...|+.++|..+++. .+.+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++
T Consensus 582 ~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 77889999999998872 25566677888899999999999999999999863 4467889999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHhhcCccccc
Q 047659 542 GLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGL--EP---DIITYNTIICGYCSLNSCLID 612 (619)
Q Consensus 542 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p---~~~~~~~ll~~~~~~~~~~~~ 612 (619)
|.+.++.+.+.. +.+...+..+..++...|++++|.++++++....- .| +...+..+.+.+.+.|+...+
T Consensus 656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999999887642 23556777888899999999999999999986421 22 224555566677777766554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-23 Score=196.15 Aligned_cols=442 Identities=16% Similarity=0.134 Sum_probs=349.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
....+.....+.|++.+|++....+-. +.+.+....+..++.+..+++....--...++..|.-.+
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae------------ 117 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAE------------ 117 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHH------------
Confidence 455666677778888888888776665 666666677777777777887777766666666665555
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGL 188 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~ 188 (619)
.|..++..+-..|++++|+..++.+++..++ ....|..+..++...|+.+.|...|...++.+|+. ...+...+
T Consensus 118 --~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 --AYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred --HHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 8889999999999999999999999987655 77889999999999999999999999999999833 66677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 047659 189 LRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN-VVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 267 (619)
-..|+.++|...+.++++.. +--...|+.|...+-..|+...|+..|++.... .|+ ...|-.|...|...+.+++|
T Consensus 195 ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 78899999999999888874 344567888888898999999999999998874 444 56788889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047659 268 FQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG 347 (619)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (619)
...|......... ....+..+...|...|..+.|.+.+++..+..+. -...|+.|..++-..|+..+|...|.+....
T Consensus 272 vs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9999888765322 4567777888888999999999999999887543 4678999999999999999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 047659 348 GFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPS-LLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVC 426 (619)
Q Consensus 348 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 426 (619)
. +-.....+.|...+.+.|.+++|..+|.....- .|. ....+.+...|-+.|++++|+..+++..+- .|+
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~---- 420 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT---- 420 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch----
Confidence 3 235667888899999999999999999888765 333 345778888899999999999999888764 443
Q ss_pred HHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 047659 427 SLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSS 506 (619)
Q Consensus 427 ~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 506 (619)
-...|+.+...|-..|+.+.|.+.+......+ +.-....+.|...|-..|++.+
T Consensus 421 -------------------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 421 -------------------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred -------------------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHH
Confidence 23467778888888899999999888877653 2335577888888889999999
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHH
Q 047659 507 AILLFFQMLKRGLTPDV-ITYSAIIHG 532 (619)
Q Consensus 507 A~~~~~~~~~~~~~p~~-~~~~~l~~~ 532 (619)
|+.-|+..++- +||. ..|..++.+
T Consensus 475 AI~sY~~aLkl--kPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 475 AIQSYRTALKL--KPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHcc--CCCCchhhhHHHHH
Confidence 99999998864 5653 344444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-21 Score=201.67 Aligned_cols=536 Identities=10% Similarity=-0.039 Sum_probs=348.1
Q ss_pred HHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYS 116 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (619)
...+...|++++|+..|+.+.. |.++.++..++..+.+.|++++|+..++++++.+|.+.. .+.
T Consensus 51 a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~--------------~~~ 116 (987)
T PRK09782 51 ALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDAR--------------LER 116 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH--------------HHH
Confidence 3334557999999999999998 888999999999999999999999999999999987654 233
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH--------HHhcCChhHHHHHHHHHhhCCccc---hHHHH
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC--------LVDSNSVGQYYKLCRAMRGKGFCV---YEFLM 185 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~ 185 (619)
.++.. +++++|..+++++....|. +..++..+... |.+.++...+++ .+.....+++ ...+.
T Consensus 117 ~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~ 189 (987)
T PRK09782 117 SLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLL 189 (987)
T ss_pred HHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHH
Confidence 33222 8888888888888887655 66666666665 666655555555 3333333222 44447
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI-NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKL 264 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 264 (619)
+.|...|+++.|++.+.++.+.+ +.+......+..+|.. .++ +.+..++... .+.+...+..+...|.+.|+.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCH
Confidence 88888888888888888888886 5555556666677776 356 6666665432 345777788888888888888
Q ss_pred HHHHHHHHHHHhCCCC-CCHHHHH------------------------------HHHHHHHhcCCHHHHHHHHH------
Q 047659 265 EKAFQLYNLMMEMDLV-PDLIIYS------------------------------ILIDGLFKAGRLKEGNELLL------ 307 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~~-~~~~~~~------------------------------~ll~~~~~~~~~~~a~~~~~------ 307 (619)
++|.++++++...... |+..++. .++..+.+.++++.++++..
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANE 343 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcch
Confidence 8888888887643211 2222211 11344445555554444421
Q ss_pred -----------------------HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 047659 308 -----------------------TALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG-G-FLPNVISYSILIKG 362 (619)
Q Consensus 308 -----------------------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~ 362 (619)
.|.+.. +-+......+.....+.|+.++|..+|+..... + -.++......++..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 111110 113333333344455677788888888777652 1 12234444466666
Q ss_pred HHhcCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047659 363 LCQQGR---LVEACGL----------------------FGQVLIR-RL-EP--SLLTYSSLIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 363 ~~~~~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 413 (619)
|.+.+. ...+..+ ++..... +. ++ +...|..+..++.. +++++|...+..
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 666554 2222222 1111111 11 22 45556666666655 777788887777
Q ss_pred HHHcCCCCCHhhHHHH-----HhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 047659 414 MIKRGLKPDAVVCSLL-----INGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDV 488 (619)
Q Consensus 414 ~~~~~~~~~~~~~~~l-----l~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 488 (619)
.... .|+......+ -.++.++|...++.+... .|+...+..+..++.+.|+.++|...++...+.. +.+.
T Consensus 502 Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~ 576 (987)
T PRK09782 502 AEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDN 576 (987)
T ss_pred HHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccH
Confidence 6655 3554321111 122788888888876554 2333445566677788888888888888877654 2233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 047659 489 ITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNML 568 (619)
Q Consensus 489 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 568 (619)
..+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..... +.+...+..+..++
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33333333444558888888888888865 5677778888888888888888888888888753 23566777787888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCcccccc
Q 047659 569 IKECNLDAALKLFGQLTDRGLEP-DIITYNTIICGYCSLNSCLIDG 613 (619)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~ 613 (619)
...|++++|++.+++..+ ..| +...+..+-.++.+.|+...+.
T Consensus 654 ~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 654 WDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888888887 345 4677888888888888876554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-20 Score=194.66 Aligned_cols=522 Identities=10% Similarity=0.024 Sum_probs=349.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++....+...++..|++++|+..++.+.. |.+...+..++.+ +++++|...|++++..+|.+.+
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~--------- 143 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDA--------- 143 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChh---------
Confidence 467778888999999999999999999998 5555555555444 9999999999999999999887
Q ss_pred CCCcccHHHHHHH--------HHHcCChhhHHHHHHHHHhCCCCCCHHhHHH-HHHHHHhcCChhHHHHHHHHHhhCCc-
Q 047659 109 GDFGCDYSFLIEN--------YVRIGKIDESVEIFAYMSDMGIYLSPDLVQR-LMSCLVDSNSVGQYYKLCRAMRGKGF- 178 (619)
Q Consensus 109 ~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~- 178 (619)
++..++.. |.+.+...++++ .....+.|++.+... +.++|.+.+++++|++.+.++.+.++
T Consensus 144 -----~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl 214 (987)
T PRK09782 144 -----VPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL 214 (987)
T ss_pred -----HHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC
Confidence 44555554 555544444443 222224444444433 37777778888888888888877777
Q ss_pred cc--hHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC-CChhhHH--
Q 047659 179 CV--YEFLMNGLLR-KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPK-PNVVTFS-- 252 (619)
Q Consensus 179 ~~--~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~-- 252 (619)
+. ...+..+|.. .++ +.+..++.. ....+...+..+...|.+.|+.++|.+++.++...... |...+|.
T Consensus 215 ~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~ 289 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL 289 (987)
T ss_pred CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH
Confidence 22 5556666666 355 666666442 22356777777777777888888877777776532111 1111111
Q ss_pred ----------------------------HHHHHHHhcCCHHHHHHHH-----------------------------HHHH
Q 047659 253 ----------------------------TLINAFCKEAKLEKAFQLY-----------------------------NLMM 275 (619)
Q Consensus 253 ----------------------------~l~~~~~~~~~~~~a~~~~-----------------------------~~m~ 275 (619)
.++..+.+.++++.+.++. +.|.
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y 369 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLY 369 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHH
Confidence 1133444455555444432 2222
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHcCCC---HHHHHHH----------
Q 047659 276 EMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR-G-LKLDVVVFSSVMDAYVGIGD---VGRAVQT---------- 340 (619)
Q Consensus 276 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~---~~~a~~~---------- 340 (619)
+.. +-+......+.-...+.|+.++|.++++..... + ..++.....-++..|.+.+. ..++..+
T Consensus 370 ~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 370 QQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 210 113333333334456788999999999988762 1 23355566677777776655 3333222
Q ss_pred ------------HHHHHhC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047659 341 ------------YDRMLNG-GF-LP--NVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKL 404 (619)
Q Consensus 341 ------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 404 (619)
++..... +. ++ +...|..+..++.. +++++|...+...... .|+......+..++...|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCH
Confidence 1111111 11 33 56677777777766 7888899988887766 45654444445556789999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHH-----HhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 405 RDGFSLYDNMIKRGLKPDAVVCSLL-----INGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLM 479 (619)
Q Consensus 405 ~~a~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 479 (619)
++|...++.+... .|+...+..+ -.++.++|...++......+. +...+..+.......|++++|...++..
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999987654 2332222111 123888999999988876422 3333334444445569999999999998
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH
Q 047659 480 GMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA 559 (619)
Q Consensus 480 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 559 (619)
... .|+...+..+...+.+.|++++|...|++..... +.+...++.+..++...|+.++|+..+++..+.. +-+..
T Consensus 603 L~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~ 678 (987)
T PRK09782 603 LNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPA 678 (987)
T ss_pred HHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 876 4678889999999999999999999999999863 3456677888889999999999999999998853 23677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 560 IYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
.+..+..++...|++++|+..+++..+ +.|+
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~ 709 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVID--DIDN 709 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCC
Confidence 889999999999999999999999987 4564
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-20 Score=185.98 Aligned_cols=541 Identities=13% Similarity=0.086 Sum_probs=389.1
Q ss_pred HHccCCchhHHHHHHHhhc---CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHH---------------
Q 047659 42 LIKTNNPTPAIQFFKWTHN---CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRL--------------- 103 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------- 103 (619)
....|++..|+.+|+.+.. ..-+.....+++.+.+.|+.+.|+..|+++++.+|...+++-.
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 3668999999999999776 3344566788899999999999999999999999977665411
Q ss_pred -----HHhh---cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 104 -----FRDS---LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY--LSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 104 -----~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
+... .+..+.+.+.|...|.-.|+++.+..+...+...... .-...+..++++|-..|+++.|...|...
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 1111 2445558888899999999999999999888765322 12345888999999999999999999998
Q ss_pred hhCCc-c-c--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CcchHHHHHHHHHhCCCC
Q 047659 174 RGKGF-C-V--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING----QIGNASSLFDVLLLVGPK 245 (619)
Q Consensus 174 ~~~~~-~-~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~A~~~~~~~~~~~~~ 245 (619)
.+.++ + + +..+.+.+.+.|+++.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.+..+.- +
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~ 411 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-P 411 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-c
Confidence 88887 3 2 7788899999999999999999998884 566677777777777664 4567777777776653 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH
Q 047659 246 PNVVTFSTLINAFCKEAKLEKAFQLYNLMM----EMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR---GLKLDV 318 (619)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 318 (619)
.|...|-.+...+....-+.. +.+|..+. ..+..+.+...|.+...+...|++..|...|...... ...+|.
T Consensus 412 ~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 467778777777765554444 66665543 4455577888999999999999999999999888755 122232
Q ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047659 319 ------VVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPN-VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTY 391 (619)
Q Consensus 319 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 391 (619)
.+-..+....-..++++.|.+.|..+.+. .|+ ...|-.+....-..+...+|...+.+..... ..++..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ar 567 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNAR 567 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHH
Confidence 12333445555677899999999988875 233 3344445444445678888888888887653 2355556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHhc-----------------cHHHHHHHHHHHHhCCCCCCH
Q 047659 392 SSLIDGFCKSGKLRDGFSLYDNMIKRG-LKPDAVVCSLLING-----------------LMGDALRFFFQSVRMTLIPNL 453 (619)
Q Consensus 392 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~-----------------~~~~a~~~~~~~~~~~~~~~~ 453 (619)
+.+...+.+...+..|..-|....+.. ..+|.++..++-+- ..+.|+++|.+.+...+. |.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~ 646 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NM 646 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hh
Confidence 666777888888888887666655432 22444443333221 567788888888876544 77
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHH
Q 047659 454 FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRG-LTPDVITYSAIIHG 532 (619)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~ 532 (619)
..-|.+.-+++..|++..|..+|.+..+.. .-...+|..+...|...|++..|+++|+...+.- -.-+..+...|.++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 777888888889999999999999888764 2355678888899999999999999999887753 34467788889999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH------------------HHHcCCHHHHHHHHHHHHhCCCC
Q 047659 533 LFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNM------------------LIKECNLDAALKLFGQLTDRGLE 590 (619)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~g~~~~A~~~~~~~~~~g~~ 590 (619)
+...|.+.+|.+.+.......+.-....||..+.. ....+..+.|.++|..|...+-.
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999998888877775433333445443321 11224567788888888875433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-22 Score=185.27 Aligned_cols=444 Identities=18% Similarity=0.182 Sum_probs=364.9
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
........+++-..+.|++.+|++.-.....++|.+.+ ....+...+.+..+.+.....-...++.
T Consensus 46 ~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~--------------~llll~ai~~q~~r~d~s~a~~~~a~r~ 111 (966)
T KOG4626|consen 46 EGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTE--------------RLLLLSAIFFQGSRLDKSSAGSLLAIRK 111 (966)
T ss_pred ccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCccc--------------ceeeehhhhhcccchhhhhhhhhhhhhc
Confidence 44455778899999999999999999888888887665 3334455667777777766655555555
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHH
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV-TCN 217 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~ 217 (619)
.+. ..++|..+..++-..|++++|+..|+.+++..| |.|..+..++...|+.+.|.+.|.+.++.+ |+.. ..+
T Consensus 112 ~~q-~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s 188 (966)
T KOG4626|consen 112 NPQ-GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARS 188 (966)
T ss_pred cch-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhc
Confidence 443 678999999999999999999999999999999 559999999999999999999999999874 5444 334
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPN-VVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD-LIIYSILIDGLFK 295 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 295 (619)
.+...+...|++++|...+-+.++. .|. ...|..|...+-..|+...|++.|++..+. .|+ ...|..|...|..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKE 264 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHH
Confidence 4555566689999999999998875 344 567999999999999999999999999875 344 5678889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 047659 296 AGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPN-VISYSILIKGLCQQGRLVEACG 374 (619)
Q Consensus 296 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~ 374 (619)
.+.++.|...+......... ....+..+...|...|+++.|+..|++..+. .|+ ...|+.|..++-..|+..+|..
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHH
Confidence 99999999999998876433 5677888888899999999999999999986 344 6789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHh
Q 047659 375 LFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLF 454 (619)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~ 454 (619)
.+.+....... -....+.+...|...|.+++|..+|....+. .|. -..
T Consensus 342 cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~-----------------------------~aa 389 (966)
T KOG4626|consen 342 CYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPE-----------------------------FAA 389 (966)
T ss_pred HHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--Chh-----------------------------hhh
Confidence 99999876333 4567888999999999999999999988764 332 234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHH
Q 047659 455 IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPD-VITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPD-VITYSAIIHG 532 (619)
Q Consensus 455 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 532 (619)
..+.|...|-+.|++++|+..|++...- .|+ ...|+.+...|-..|+.+.|...|.+.+.. .|. ...++.+...
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASI 465 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHH
Confidence 6788999999999999999999998764 555 568999999999999999999999999864 454 4678899999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHH
Q 047659 533 LFKGKNISVGLHMFKLMERNGVAPDIA-IYNVLLNM 567 (619)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~ 567 (619)
|...|++.+|+.-++...+. +||.. .|..++.+
T Consensus 466 ~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 466 YKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHC 499 (966)
T ss_pred hhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHH
Confidence 99999999999999999984 45532 34444333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-19 Score=177.20 Aligned_cols=520 Identities=11% Similarity=0.031 Sum_probs=288.6
Q ss_pred chhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHc
Q 047659 48 PTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRI 125 (619)
Q Consensus 48 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (619)
.+.|...|..+.. |++...+.+-+.+....|++..|..+|..++..+|..... ....+..++.+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD-------------~rIgig~Cf~kl 212 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD-------------VRIGIGHCFWKL 212 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC-------------ccchhhhHHHhc
Confidence 4899999998887 8999999999999999999999999999999887754221 455566677788
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---CChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDS---NSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~ 199 (619)
|+.+.|+..|.++.+.+|. ++.++..|...-... ..+..+..++...-..++ ++ .+.+...|...|++..+..
T Consensus 213 ~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred cchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 8888888888888776552 444444443332222 233455555555555444 22 6666666666666666666
Q ss_pred HHHHHHHCCCC--CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 200 MHRQVIQRGFV--PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 200 ~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
+...++..... .-...|..+.++|-..|++++|...|.........--...+.-+...|.+.|+++.+...|+...+.
T Consensus 292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 66666554211 1122355556666666666666666666555322211233344555666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH----HhCCC
Q 047659 278 DLVPDLIIYSILIDGLFKAG----RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRM----LNGGF 349 (619)
Q Consensus 278 ~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~ 349 (619)
. +-+..+...+...|...+ ..+.|..++.+..+.. +.|...|-.+...+-...-+ .++..|... ...+.
T Consensus 372 ~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~ 448 (1018)
T KOG2002|consen 372 L-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGK 448 (1018)
T ss_pred C-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCC
Confidence 2 113344444444444332 3345555555554443 22455555554444333222 224433322 23333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 047659 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIR---RLEPSL------LTYSSLIDGFCKSGKLRDGFSLYDNMIKR--- 417 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 417 (619)
.+.+...|.+.......|.++.|...|...... ...++. .+--.+....-..++.+.|.+.|..+...
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 455555555555555566666665555555433 111111 11111223333344444555555444433
Q ss_pred --------------------------------CCCCCHhhHHHHHhc---cHHHHHHHHHHHHhCC-CCCCHhhHHHHHH
Q 047659 418 --------------------------------GLKPDAVVCSLLING---LMGDALRFFFQSVRMT-LIPNLFIFNTLMD 461 (619)
Q Consensus 418 --------------------------------~~~~~~~~~~~ll~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 461 (619)
...|+..++-.-+.. .+..|..-|..+.... ..+|..+.-+|..
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 122333322221111 2222333233222211 1134444445555
Q ss_pred HHHh------------cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 047659 462 GCCR------------LKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAI 529 (619)
Q Consensus 462 ~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 529 (619)
.|.+ .+..++|+++|....... +.|...-|.+.-.++..|++.+|..+|.+..+... -+..+|..+
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNl 686 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNL 686 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeH
Confidence 4432 233456666666666554 45666666676777777777777777777776532 244566677
Q ss_pred HHHHHccCChHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 530 IHGLFKGKNISVGLHMFKLMERN-GVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
..+|+.+|++..|+++|+...+. ...-+..+...|.+++.+.|.+.+|.+.+.....
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77777777777777777766553 3344666777777777777777777777766665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-20 Score=192.90 Aligned_cols=354 Identities=15% Similarity=0.126 Sum_probs=230.4
Q ss_pred HHccCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYS 116 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (619)
++++.+++.---+|...++ ..+.......+..+.+.|++++|..+++.++...|.+.+ ++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~--------------~l~ 80 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD--------------LLR 80 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh--------------HHH
Confidence 4556666665555555444 334444556666677777777777777777777776666 555
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-c--hHHHHHHHHhcCC
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-V--YEFLMNGLLRKGV 193 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~l~~~~~~~~~ 193 (619)
.++.+....|++++|+..|+++....|. ++..+..+...+...|++++|+..++++.+..|+ . +..++.++...|+
T Consensus 81 ~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 81 RWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred HHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 5666666677777777777777776544 5667777777777777777777777777776662 2 6667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNL 273 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 273 (619)
+++|...++.+.... +.+...+..+ ..+...|++++|...++.+....+.++...+..+..++...|++++|...|+.
T Consensus 160 ~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 160 ELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777666553 2233333333 23566777777777777766554333444444555666777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 047659 274 MMEMDLVPDLIIYSILIDGLFKAGRLKE----GNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF 349 (619)
Q Consensus 274 m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (619)
+.+.... +...+..+...+...|++++ |...++...+..+. +...+..+...+...|++++|...+++..+..
T Consensus 238 al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~- 314 (656)
T PRK15174 238 ALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH- 314 (656)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 7765422 45666667777777777764 67777777765433 56677777777777777777777777777653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL-LTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
+.+...+..+...+.+.|++++|...++.+... .|+. ..+..+..++...|+.++|...|+...+.
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 234555666667777777777777777777665 2332 22333455667777777777777776664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-20 Score=193.35 Aligned_cols=330 Identities=12% Similarity=0.071 Sum_probs=283.5
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
..+..++....++|++++|+.+++.... |.++.++..++......|++++|...|++++..+|.+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----------- 111 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----------- 111 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH-----------
Confidence 3677888999999999999999999887 888999999999999999999999999999999998877
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNG 187 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~ 187 (619)
++..++..+.+.|++++|+..++++.+..+. ++..+..++.++...|++++|...++.+....|+. +..+ ..
T Consensus 112 ---a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~ 186 (656)
T PRK15174 112 ---DVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LS 186 (656)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HH
Confidence 7889999999999999999999999987554 78889999999999999999999999998887732 4333 35
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEK- 266 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 266 (619)
+...|++++|...++.+++....++......+...+...|++++|...++.+....+. +...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhh
Confidence 7889999999999999988753344555556677888999999999999999987543 67788889999999999986
Q ss_pred ---HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 267 ---AFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 267 ---a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
|...|+...+.... +...+..+...+...|++++|...+++..+.... +...+..+...+.+.|++++|...++.
T Consensus 266 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999886433 6778999999999999999999999999987544 667788889999999999999999999
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 344 MLNGGFLPNV-ISYSILIKGLCQQGRLVEACGLFGQVLIRR 383 (619)
Q Consensus 344 ~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (619)
+...+ |+. ..+..+..++...|++++|...|+...+..
T Consensus 344 al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 344 LAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 98763 444 334445677889999999999999998773
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-19 Score=188.06 Aligned_cols=431 Identities=10% Similarity=0.009 Sum_probs=277.1
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGC 113 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (619)
+......+.+.|++++|+..|+.+.. .+++..+..++.++.+.|++++|+..+++++..+|....
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~-------------- 195 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK-------------- 195 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH--------------
Confidence 34455566777777777777777776 445666777777777777777777777777777666555
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
++..++.+|...|++++|+..|..+...+...+. ....++..+.. ..+........+..+ +. +..+.. +..
T Consensus 196 a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~ 269 (615)
T TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGN-YLQ 269 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHH-HHH
Confidence 6677777777777777777777666544322122 11122211111 122333333333333 11 222222 221
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHH---HHhcCCcchHHHHHHHHHhCCC-CC-ChhhHHHHHHHHHhcCCH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPN-IVTCNKILKR---LCINGQIGNASSLFDVLLLVGP-KP-NVVTFSTLINAFCKEAKL 264 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~---~~~~~~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~ 264 (619)
......+..-+....+. .+. ...+..+... ....+++++|.+.|+.....+. .| ....|+.+...+...|++
T Consensus 270 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 11111111111111111 111 1111111111 1234678899999999887541 23 456678888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 047659 265 EKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRM 344 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 344 (619)
++|+..|+...+.... +...|..+...+...|++++|...++++.+.... +..++..+...+...|++++|...|++.
T Consensus 348 ~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 348 LEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999876322 4667888888899999999999999999887543 6788889999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 047659 345 LNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV 424 (619)
Q Consensus 345 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 424 (619)
.+.. +.+...+..+...+.+.|++++|...++...+.. +.+...++.+...+...|++++|...|+...+.. |+..
T Consensus 426 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~ 501 (615)
T TIGR00990 426 IDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETK 501 (615)
T ss_pred HHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--Cccc
Confidence 8864 3356777888888999999999999999988763 2256778888999999999999999999987752 2210
Q ss_pred hHHHHHhccHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047659 425 VCSLLINGLMGDALRFFFQSVRMTLIPNL-FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGS 503 (619)
Q Consensus 425 ~~~~ll~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 503 (619)
. ...+. ..++.....+...|++++|..++++..... +.+...+..+...+...|+
T Consensus 502 ~-----------------------~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 502 P-----------------------MYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGD 557 (615)
T ss_pred c-----------------------ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccC
Confidence 0 00011 112222223334577777777777766543 2334456667777777777
Q ss_pred HHHHHHHHHHHHHC
Q 047659 504 LSSAILLFFQMLKR 517 (619)
Q Consensus 504 ~~~A~~~~~~~~~~ 517 (619)
+++|...|++..+.
T Consensus 558 ~~eAi~~~e~A~~l 571 (615)
T TIGR00990 558 VDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-21 Score=189.08 Aligned_cols=300 Identities=15% Similarity=0.068 Sum_probs=140.3
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
......+..+...|++++|...|++++..+|.+.. ++..++..+...|++++|..+++.+......
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 101 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVE--------------LHLALGNLFRRRGEVDRAIRIHQNLLSRPDL 101 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHH--------------HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC
Confidence 33344455556666777777777777666665544 5666666666777777777777666654221
Q ss_pred CC---HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----h
Q 047659 145 LS---PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI----V 214 (619)
Q Consensus 145 ~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~ 214 (619)
++ ...+..++..|.+.|++++|..+|+++.+..+ + .+..++..+...|++++|.+.++.+.+.+..++. .
T Consensus 102 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 181 (389)
T PRK11788 102 TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH 181 (389)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 11 13445555666666666666666666555443 1 1444555555555555555555555444311111 1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047659 215 TCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLF 294 (619)
Q Consensus 215 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 294 (619)
.+..+...+...|++++|...|+++.+..+ .+...+..+...+.+.|++++|.++|+++.+.+......++..++.++.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 122333344444444444444444443321 1233334444444444444444444444443321111233344444444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHH
Q 047659 295 KAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQ---QGRLVE 371 (619)
Q Consensus 295 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~ 371 (619)
..|++++|...++.+.+.. |+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++
T Consensus 261 ~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchh
Confidence 4444444444444444332 22223344444444444444444444444332 2344444444433332 224444
Q ss_pred HHHHHHHHHHCC
Q 047659 372 ACGLFGQVLIRR 383 (619)
Q Consensus 372 a~~~~~~~~~~~ 383 (619)
+..+++.+.+++
T Consensus 337 a~~~~~~~~~~~ 348 (389)
T PRK11788 337 SLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-18 Score=180.68 Aligned_cols=428 Identities=10% Similarity=0.002 Sum_probs=284.9
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.+...+..+.+.|++++|+..|++++...|. +. .|..++.+|.+.|++++|++.++.+++.++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~--------------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~- 192 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PV--------------YYSNRAACHNALGDWEKVVEDTTAALELDPD- 192 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hH--------------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-
Confidence 3456788888899999999999999887664 22 6788888999999999999999999887554
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR 222 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 222 (619)
+..++..+..+|...|++++|+..|..+...++ +. ...++..+.. ..+.......++.. +++...+..+..
T Consensus 193 ~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~- 266 (615)
T TIGR00990 193 YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN- 266 (615)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-
Confidence 677888889999999999999888876655443 11 1122221111 22233333333332 233333333322
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 047659 223 LCINGQIGNASSLFDVLLLVGPKPN-VVTFSTLINA---FCKEAKLEKAFQLYNLMMEMD-LVP-DLIIYSILIDGLFKA 296 (619)
Q Consensus 223 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~ 296 (619)
+...........-++...+. .+. ...+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 267 YLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred HHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 22222222222222222111 111 1111111111 123467888999998888754 223 345677777778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047659 297 GRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLF 376 (619)
Q Consensus 297 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 376 (619)
|++++|...+++..+.... ....|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|
T Consensus 345 g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred CCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888876432 46677788888888899999999988887753 345777888888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhH
Q 047659 377 GQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIF 456 (619)
Q Consensus 377 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (619)
+........ +...+..+..++.+.|++++|+..++...+. .|+ +...+
T Consensus 423 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~-----------------------------~~~~~ 470 (615)
T TIGR00990 423 QKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPE-----------------------------APDVY 470 (615)
T ss_pred HHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------------------------ChHHH
Confidence 888876432 4556677778888888888888888887764 333 45667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047659 457 NTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVI------THTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAII 530 (619)
Q Consensus 457 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 530 (619)
+.+...+...|++++|+..|+.........+.. .++.....+...|++++|..++++..... +.+...+..+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la 549 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 778888888899999998888877653111111 11222223334688888888888887653 23445678888
Q ss_pred HHHHccCChHHHHHHHHHHHHC
Q 047659 531 HGLFKGKNISVGLHMFKLMERN 552 (619)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~ 552 (619)
..+...|++++|++.|++..+.
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 8888888888888888888764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=185.42 Aligned_cols=302 Identities=17% Similarity=0.183 Sum_probs=255.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c------chHHHHHH
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C------VYEFLMNG 187 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~------~~~~l~~~ 187 (619)
....+..+...|++++|+..|+++.+.++. +..++..++..+...|++++|..+++.+..... + .+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 334456678889999999999999997654 678899999999999999999999999987653 1 26788899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCC
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNV----VTFSTLINAFCKEAK 263 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 263 (619)
+...|+++.|..+|..+.+.. +.+..++..++..+.+.|++++|.+.++.+...++.+.. ..+..+...+.+.|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999874 567888999999999999999999999999886554322 245667778889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 264 LEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 264 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
+++|.+.|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987642 256678888899999999999999999999875443356788999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCC
Q 047659 344 MLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCK---SGKLRDGFSLYDNMIKRGLK 420 (619)
Q Consensus 344 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~ 420 (619)
+.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+.++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 9886 466677788999999999999999999999876 6888888888887764 55899999999999987766
Q ss_pred CCH
Q 047659 421 PDA 423 (619)
Q Consensus 421 ~~~ 423 (619)
|++
T Consensus 351 ~~p 353 (389)
T PRK11788 351 RKP 353 (389)
T ss_pred CCC
Confidence 653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-19 Score=188.78 Aligned_cols=369 Identities=10% Similarity=0.032 Sum_probs=249.3
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
.+++|..+..-+..+.-.|+.++|++.+..+.. +....++..++..+...|++++|...|++++...|.+.+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~------ 84 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD------ 84 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Confidence 567899999999999999999999999999885 555566899999999999999999999999999888777
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hH
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YE 182 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~ 182 (619)
.+..++.++...|++++|+..++++++..|. ++. +..+..++...|++++|+..++++.+..| +. +.
T Consensus 85 --------a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~ 154 (765)
T PRK10049 85 --------YQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPT 154 (765)
T ss_pred --------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6778999999999999999999999987555 677 98999999999999999999999999999 33 66
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHh-----cCCc---chHHHHHHHHHhC-CCCCC
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPNI------VTCNKILKRLCI-----NGQI---GNASSLFDVLLLV-GPKPN 247 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~~~~-----~~~~---~~A~~~~~~~~~~-~~~~~ 247 (619)
.+..++...+..+.|++.++.+.. .|+. .....++..... .+++ ++|++.++.+... ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 778888889999999998887664 2221 011222222211 1223 5667777777643 11222
Q ss_pred hh-hH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CH
Q 047659 248 VV-TF----STLINAFCKEAKLEKAFQLYNLMMEMDLV-PDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL---DV 318 (619)
Q Consensus 248 ~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 318 (619)
.. .+ ...+.++...|++++|+..|+.+.+.+.+ |+. ....+...+...|++++|+..|+.+.+..... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 11 11 11123445667778888888777766432 222 11224556777777888888777776543211 12
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047659 319 VVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF-----------LPN---VISYSILIKGLCQQGRLVEACGLFGQVLIRRL 384 (619)
Q Consensus 319 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 384 (619)
.....+..++...|++++|.++++.+..... .|+ ...+..+...+...|++++|+++++++....+
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP 390 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455555666777777777777777765420 112 11233444455555666666666665554422
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 385 EPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 385 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
. +...+..+...+...|++++|+..++.....
T Consensus 391 ~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 391 G-NQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 2 3444555555555556666666666555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-18 Score=182.64 Aligned_cols=405 Identities=12% Similarity=0.056 Sum_probs=270.6
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.++.-......+....|+.++|+.++.++....|.+.. ++..++.++.+.|++++|..+|+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~--------------~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPAR--------------GYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566666677778889999999999999999875555544 688999999999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc-hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV-YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
..|. ++..+..++.++...|++++|+..++++++..| +. +..+..++...|+.++|+..++++.+.. +.+...+..
T Consensus 78 ~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~ 155 (765)
T PRK10049 78 LEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTE 155 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 7544 678888999999999999999999999999888 22 7778888889999999999999999985 556666777
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCH
Q 047659 219 ILKRLCINGQIGNASSLFDVLLLVGPKPNV------VTFSTLINAFC-----KEAKL---EKAFQLYNLMMEM-DLVPDL 283 (619)
Q Consensus 219 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~m~~~-~~~~~~ 283 (619)
+...+...+..+.|.+.++.... .|+. ......+.... ..+++ ++|++.++.+.+. ...|+.
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 78888888999999988887653 2221 01112222221 11223 6677777777653 122222
Q ss_pred H-HHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC---CHH
Q 047659 284 I-IYS----ILIDGLFKAGRLKEGNELLLTALDRGLK-LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLP---NVI 354 (619)
Q Consensus 284 ~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 354 (619)
. .+. ..+..+...|++++|...|+.+.+.+.+ |+. .-..+...|...|++++|...|+++.+..... ...
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 1 111 1133445667888888888887776532 222 22224667778888888888888776542111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047659 355 SYSILIKGLCQQGRLVEACGLFGQVLIRRL-----------EPS---LLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLK 420 (619)
Q Consensus 355 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 420 (619)
....+..++.+.|++++|...++.+..... .|+ ...+......+...|+.++|+.+++++... .
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~ 389 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--A 389 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 455566667778888888888887776521 112 112334455566666666666666666554 2
Q ss_pred CCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047659 421 PDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIAS 500 (619)
Q Consensus 421 ~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 500 (619)
|+ +...+..+...+...|++++|++.++...... +.+...+......+..
T Consensus 390 P~-----------------------------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 390 PG-----------------------------NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALD 439 (765)
T ss_pred CC-----------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHH
Confidence 33 44455566666666666666666666666543 2234444555555666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047659 501 QGSLSSAILLFFQMLKR 517 (619)
Q Consensus 501 ~g~~~~A~~~~~~~~~~ 517 (619)
.|++++|+.+++++++.
T Consensus 440 ~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 66666666666666653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-17 Score=172.69 Aligned_cols=329 Identities=11% Similarity=0.088 Sum_probs=190.7
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
.|......+....++|+++.|++.|+.+.. |.++.....++.++...|+.++|+..+++++ +|.+....
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~------- 103 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSR------- 103 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHH-------
Confidence 444444555555678888888888888886 5544444477788888888888888888888 33332211
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGL 188 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 188 (619)
....++..|...|++++|+++|+.+++..|. ++..+..++..+...++.++|++.++++.+..|+....++.++
T Consensus 104 -----~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~lay 177 (822)
T PRK14574 104 -----GLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSY 177 (822)
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHH
Confidence 3344466788888888888888888887665 6777777888888888888888888888888884411133344
Q ss_pred H--hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH-------HHH
Q 047659 189 L--RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLIN-------AFC 259 (619)
Q Consensus 189 ~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-------~~~ 259 (619)
. ..++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++...- |+..+-..... -.+
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHHHHHHHHHHH
Confidence 4 3555555888888888875 556777777778888888887777665543 22211111100 001
Q ss_pred h---------cCC---HHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047659 260 K---------EAK---LEKAFQLYNLMMEM-DLVPDL-----IIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVF 321 (619)
Q Consensus 260 ~---------~~~---~~~a~~~~~~m~~~-~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 321 (619)
+ ..+ .+.|+.-++.+... +..|.. ....-.+-++...|++.++.+.++.+...+.+....+-
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 0 111 12233333333321 111211 11112233444555555555555555555444344455
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 322 SSVMDAYVGIGDVGRAVQTYDRMLNGG-----FLPNVISYSILIKGLCQQGRLVEACGLFGQVLI 381 (619)
Q Consensus 322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (619)
..+.++|...++.++|..+++.+.... .+++......|..++...+++++|..+++.+.+
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 555555555555555555555554321 111222234455555555555555555555544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-17 Score=168.10 Aligned_cols=458 Identities=9% Similarity=-0.021 Sum_probs=334.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|..+.+...-+-+..++|+++.|+..|+++++.+|.+... ++ .++..+...|+.++|+..+++...
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~a-------------v~-dll~l~~~~G~~~~A~~~~eka~~ 96 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQ-------------VD-DWLQIAGWAGRDQEVIDVYERYQS 96 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhh-------------HH-HHHHHHHHcCCcHHHHHHHHHhcc
Confidence 6677777788889999999999999999999998886431 33 788888899999999999999983
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
.. ..+......++..+...|++++|+++|+++.+..| ++ +..++..+...++.++|++.++.+... .|+...+.
T Consensus 97 p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l 173 (822)
T PRK14574 97 SM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYM 173 (822)
T ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHH
Confidence 21 22344555557789999999999999999999999 33 777888999999999999999999887 45555554
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------HHHHHH
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLII------YSILID 291 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~ll~ 291 (619)
.++..+...++..+|++.++++.+..+. +...+..++.++.+.|-...|+++.+.-... +.+.... ....++
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHh
Confidence 4544554466666699999999987443 6777888889999999999998777654322 1111111 111111
Q ss_pred HHH-----hcCC---HHHHHHHHHHHHHc-CCCC-CHHH----HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047659 292 GLF-----KAGR---LKEGNELLLTALDR-GLKL-DVVV----FSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYS 357 (619)
Q Consensus 292 ~~~-----~~~~---~~~a~~~~~~~~~~-~~~~-~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (619)
.-. ...+ .+.|+.-++.+... +..| .... ..-.+-++...|++.++++.|+.+...+.+....+-.
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 110 1112 34455555555542 1112 2222 2244567778999999999999999988776777889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHh
Q 047659 358 ILIKGLCQQGRLVEACGLFGQVLIRR-----LEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD-AVVCSLLIN 431 (619)
Q Consensus 358 ~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~ 431 (619)
.+..+|...+++++|..+++.+.... ..++......|.-++...+++++|..+++.+.+. .|. ...+..
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~--- 406 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGL--- 406 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCC---
Confidence 99999999999999999999997653 1234444577889999999999999999999874 331 000000
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047659 432 GLMGDALRFFFQSVRMTLIPNLF-IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILL 510 (619)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 510 (619)
....+.||-. .+..++..+...|+..+|++.++.+.... +-|......+...+...|.+.+|+..
T Consensus 407 -------------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~ 472 (822)
T PRK14574 407 -------------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQE 472 (822)
T ss_pred -------------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0011223332 34456677788999999999999997664 67888888999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH
Q 047659 511 FFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA 559 (619)
Q Consensus 511 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 559 (619)
++...... +-+..+......++...|++.+|..+.+.+.+. .|+..
T Consensus 473 ~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 473 LKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 97776542 334566778888888899999999999888874 34444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-17 Score=159.44 Aligned_cols=554 Identities=14% Similarity=0.065 Sum_probs=380.1
Q ss_pred ccCChh--hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHH
Q 047659 28 SDLQFN--QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRL 103 (619)
Q Consensus 28 ~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 103 (619)
..++|+ .+......+.-+|+.++|.+++..++. |.++.+|..++.++-+.|+.+++...+--+...+|++++
T Consensus 133 ~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---- 208 (895)
T KOG2076|consen 133 SKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---- 208 (895)
T ss_pred cccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH----
Confidence 445553 233333344558999999999999987 999999999999999999999999999999999998887
Q ss_pred HHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cc-
Q 047659 104 FRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CV- 180 (619)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~- 180 (619)
.|..+.....+.|++..|.-+|.++++..|. +......-...|.+.|+...|.+-|.++....| |.
T Consensus 209 ----------~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e 277 (895)
T KOG2076|consen 209 ----------LWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE 277 (895)
T ss_pred ----------HHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH
Confidence 8999999999999999999999999998655 667777788899999999999999999998887 22
Q ss_pred -----hHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC--------
Q 047659 181 -----YEFLMNGLLRKGVIENAFHMHRQVIQRG-FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP-------- 246 (619)
Q Consensus 181 -----~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 246 (619)
-...++.+...++.+.|.+.++.....+ -..+...++.++..+.+..+++.|.............+
T Consensus 278 r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 3344677778888899999999888742 24556678899999999999999998887776521111
Q ss_pred -------------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 247 -------------------NVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD--LVPDLIIYSILIDGLFKAGRLKEGNEL 305 (619)
Q Consensus 247 -------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~ 305 (619)
+... .-++-++...+..+...-+........ +.-+...|.-+..++...|.+++|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 2222 122233334444444444444455544 344567889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 047659 306 LLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLI---- 381 (619)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---- 381 (619)
|..+......-+...|-.+..+|...|.++.|.+.|+...... +-+...-..|...+.+.|+.++|.+.+..+..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 9999987655578899999999999999999999999999863 33556667777888899999999999988542
Q ss_pred ----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCHhhH-----------------HHHHhc---
Q 047659 382 ----RRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRG-----LKPDAVVC-----------------SLLING--- 432 (619)
Q Consensus 382 ----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~-----------------~~ll~~--- 432 (619)
.+..|+..........+.+.|+.++-..+...|+... +-|+..-- ..+..+
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k 595 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK 595 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc
Confidence 2344555555556667778888877666555554321 11110000 000000
Q ss_pred --c---HHHHH---HHHHHHHhCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHh----hHHHHHHH
Q 047659 433 --L---MGDAL---RFFFQSVRMTLIPNL--FIFNTLMDGCCRLKRATDTVKLFMLMGMYNI-KPDVI----THTVLIRG 497 (619)
Q Consensus 433 --~---~~~a~---~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~ 497 (619)
+ ...+. ..+......++..+. ..+.-++.++++.+++.+|+.+...+..... .-+.. .=...+.+
T Consensus 596 ~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~ 675 (895)
T KOG2076|consen 596 ATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKA 675 (895)
T ss_pred cCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHH
Confidence 0 00000 001111111111111 2456778888999999999999987765321 11222 22345566
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCC--C-CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 047659 498 IASQGSLSSAILLFFQMLKR-GLT--P-DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECN 573 (619)
Q Consensus 498 ~~~~g~~~~A~~~~~~~~~~-~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 573 (619)
.+..+++..|...++.|... +.. | -...|+..++.+.+.++-.--.+.+..+.......++.............|.
T Consensus 676 s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s 755 (895)
T KOG2076|consen 676 SLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNAS 755 (895)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccc
Confidence 77899999999999999875 211 2 2345565666666655543334444443332222223333333444566788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047659 574 LDAALKLFGQLTDRGLEPDIITYNTII 600 (619)
Q Consensus 574 ~~~A~~~~~~~~~~g~~p~~~~~~~ll 600 (619)
+..|+..+-+... ..||.+..+.+|
T Consensus 756 ~~~Al~~y~ra~~--~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 756 FKHALQEYMRAFR--QNPDSPLINLCL 780 (895)
T ss_pred hHHHHHHHHHHHH--hCCCCcHHHHHH
Confidence 9999998877766 578866666554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-15 Score=137.26 Aligned_cols=424 Identities=14% Similarity=0.122 Sum_probs=290.3
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh--------------------------HHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG--------------------------QYY 167 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------------~A~ 167 (619)
.-+.|++ ...+|.+.++.-+|++|...+.+.++.....+++.-+-.+... ..-
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 4445554 4567899999999999999988888888777776544222211 111
Q ss_pred HHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC
Q 047659 168 KLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN 247 (619)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 247 (619)
+++-+.....+.++..++.++++-...++|.+++.+......+.+..+||.+|.+-.-... .++..+|......||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 1333333333345889999999999999999999998888778899999999876544322 778888888888999
Q ss_pred hhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH----cCC----
Q 047659 248 VVTFSTLINAFCKEAKLEK----AFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLK-EGNELLLTALD----RGL---- 314 (619)
Q Consensus 248 ~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~~---- 314 (619)
..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++.. .+..++.++.. ..+
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998765 5678888999999999999999999988887763 34444444442 222
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047659 315 KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG----FLPN---VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPS 387 (619)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 387 (619)
+-|...|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|.-.-.-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 2255677788888889999888888877666431 2222 23467778888888999999999999988888888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--
Q 047659 388 LLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCR-- 465 (619)
Q Consensus 388 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 465 (619)
..+...++++..-.|.++-..+++.++...|...... -...++..+....+.|+...-..+-....+
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~-----------l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD-----------LREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH-----------HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 8999999999888999999999998888765332211 122333334444333432211112122111
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHhHHHHHHHHHccCChHH
Q 047659 466 LKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGL----TPDVITYSAIIHGLFKGKNISV 541 (619)
Q Consensus 466 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~ 541 (619)
..-.+.....-.++... .......+.+.-.+.+.|..++|.+++..+.+.+- .|......-+++.....++...
T Consensus 502 ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 11112222222334433 34455566667778888999999998888865432 2333334456666677788888
Q ss_pred HHHHHHHHHHCCCC
Q 047659 542 GLHMFKLMERNGVA 555 (619)
Q Consensus 542 A~~~~~~~~~~~~~ 555 (619)
|+..++.|...+..
T Consensus 580 A~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 580 AIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHcCch
Confidence 88888888766443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-14 Score=132.44 Aligned_cols=540 Identities=12% Similarity=0.031 Sum_probs=300.1
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHH-H-----------HH----Hh
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFF-R-----------LF----RD 106 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~-----------~~----~~ 106 (619)
-+|...|.-+++.+.+ |.+++.|..-+++--..|.+..|+.+..+--+.-|.+.+.. . .+ ..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3466789999999998 99999999999999888988888888877776666655532 0 11 01
Q ss_pred hcCCCcccHHHHH---------------------------HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047659 107 SLGDFGCDYSFLI---------------------------ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD 159 (619)
Q Consensus 107 ~~~~~~~~~~~l~---------------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (619)
..|.+...|...+ .+.+...+.++|+-++.++.+- .+.+...|. +|++
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~dLwl----Alar 418 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSMDLWL----ALAR 418 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHH
Confidence 1222222222221 1222233444444444444443 121333332 2334
Q ss_pred cCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhcCCcchH
Q 047659 160 SNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVI----QRGFVPNIVTCNKILKRLCINGQIGNA 232 (619)
Q Consensus 160 ~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~A 232 (619)
..-|+.|..++.++.+.-| +. |....+.--.+|+.+...+++.+.+ ..|+..+...|..=...|-..|..-.+
T Consensus 419 LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 4456666666666665555 32 5555555556666666666555433 235666666666666666666666666
Q ss_pred HHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 233 SSLFDVLLLVGPKP--NVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 233 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
..+....+.-|+.. -..||+.-...|.+.+.++-|..+|....+- .+-+...|......--..|..+....+|++..
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66666665544432 2345666666666667777777777666654 22244555555555555666666667777666
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047659 311 DRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLT 390 (619)
Q Consensus 311 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 390 (619)
..-.+ ....|.....-+-..||...|..++....+.. +-+...|-.-+.......+++.|..+|.+.... .|+...
T Consensus 578 ~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv 653 (913)
T KOG0495|consen 578 EQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERV 653 (913)
T ss_pred HhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchh
Confidence 65322 44455555555666677777777777666653 225556666666666677777777777666543 455555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhc-------cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 047659 391 YSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLING-------LMGDALRFFFQSVRMTLIPNLFIFNTLMDGC 463 (619)
Q Consensus 391 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (619)
|..-+..---.+..++|.+++++..+. -|+-.-+ .++.+ .++.|...|..-.+. ++.....|-.|...-
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl-~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKL-WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHH-HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 555455444556677777777666654 3332221 22222 344444444332222 122334555566656
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHH
Q 047659 464 CRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGL 543 (619)
Q Consensus 464 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 543 (619)
-+.|++-+|..+++...-.+ +-+...|...|+.-.+.|+.+.|..+..+.++. ++.+...|..-|....+.++-....
T Consensus 730 Ek~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH
Confidence 66777777777777766554 556677777777777777777777777666653 2223334444444333333322222
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcC
Q 047659 544 HMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD-IITYNTIICGYCSLN 607 (619)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~ 607 (619)
..+++. .-|+.+.-.+...+....++++|.+.|++..+. .|| -.+|..+..-+.+.|
T Consensus 808 DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 808 DALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhC
Confidence 222211 124444444444455555555555555555542 232 334444444444444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-14 Score=131.77 Aligned_cols=454 Identities=12% Similarity=0.051 Sum_probs=325.3
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENY 122 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (619)
++++..|..+|+.++. ..+...|...+..-+++.....|+.++++++.. +|..++.|...+.+=
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--------------lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--------------LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--------------cchHHHHHHHHHHHH
Confidence 6667788888888887 777788888999999999999999999999886 455556788888777
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHH
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHM 200 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~ 200 (619)
-..|++..|.++|++..+ ..|+..+|.+.+..-.+.+..+.|.++|++.+-..|++ |...++.-.+.|+...|..+
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 788999999999999987 67899999999999999999999999999999888865 88888999999999999999
Q ss_pred HHHHHHC-C-CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH-------
Q 047659 201 HRQVIQR-G-FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN-VVTFSTLINAFCKEAKLEKAFQL------- 270 (619)
Q Consensus 201 ~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~------- 270 (619)
++.+++. | -.-+...+.+....-.++..++.|.-+|.-.+++-++.. ...|..+...--+.|+.....+.
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9999886 2 011223344444444567788999999998887633322 34455555544556665544433
Q ss_pred -HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--------HHHHHcCCCHHHHHHH
Q 047659 271 -YNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVV-VFSSV--------MDAYVGIGDVGRAVQT 340 (619)
Q Consensus 271 -~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--------l~~~~~~~~~~~a~~~ 340 (619)
|+.+...+ +.|-.+|-..++.-...|+.+...++++.....-++.... .|.-. +-.-....|.+.+.++
T Consensus 310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33333433 3466778888888888899999999999988653322211 12111 1112356888899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047659 341 YDRMLNGGFLPNVISYSILIKGL----CQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIK 416 (619)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 416 (619)
|+...+. ++....||..+--.| .+..+...|.+++...+ |.-|...++...|..-.+.+.++.+..+++...+
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9888874 444556666554444 35678888888888776 4577888888888888888999999999988887
Q ss_pred cCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHhhHHHHH
Q 047659 417 RGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYN-IKPDVITHTVLI 495 (619)
Q Consensus 417 ~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~ 495 (619)
.+ |. +..+|......-...|+.+.|..+|.-..... .......|.+.|
T Consensus 466 ~~--Pe-----------------------------~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 466 FS--PE-----------------------------NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred cC--hH-----------------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 63 32 55666666666667888888888888776531 112234456666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-----ccC-----------ChHHHHHHHHHHHH
Q 047659 496 RGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF-----KGK-----------NISVGLHMFKLMER 551 (619)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 551 (619)
+.-...|.++.|..+|+++++. .+...+|-++..--. ..+ .+..|.++|+++..
T Consensus 515 dFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6666788888888888888875 334445554443222 223 45567777777654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-14 Score=130.22 Aligned_cols=460 Identities=11% Similarity=0.071 Sum_probs=351.8
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cc-hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CV-YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-~~~l~~~~~~ 190 (619)
.|...++-=..++++..|.++|++++..+. .+...|..-+..-.+..+...|..++++++..-| |- |...+-.--.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 566666666778899999999999998763 4888899999999999999999999999999888 33 7777777778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
.|++..|.++|+.-.+- .|+...|++.+..-.+-+..+.|..+++...- +.|++.+|.-...--.+.|....+..+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 89999999999999876 89999999999999999999999999999887 579999999999988999999999999
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHH--------
Q 047659 271 YNLMMEM-DL-VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL-DVVVFSSVMDAYVGIGDVGRAVQ-------- 339 (619)
Q Consensus 271 ~~~m~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~-------- 339 (619)
|....+. |- .-+...+.+....-.++..++.|.-+|+-.++.-++. ....|..+...--+-|+......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9988764 11 1123345555555557788999999999888763321 14556655555555666443332
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHH----HHHH----HHHhcCChHHHHH
Q 047659 340 TYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLL--TYS----SLID----GFCKSGKLRDGFS 409 (619)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~----~ll~----~~~~~~~~~~a~~ 409 (619)
-++.+.+.+ +-|-.+|-..+..-...|+.+...++|+..+.. ++|-.. .|. ..|+ .-....+.+.+.+
T Consensus 310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 234444442 457788888888888899999999999999876 333211 111 1122 1234678999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHhc---------cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 410 LYDNMIKRGLKPDAVVCSLLING---------LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMG 480 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~ll~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 480 (619)
+++...+. ++...+|+.-+--. ++..|.+++...+ |..|...+|...|..-.+.++++.+..+++...
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99988873 44455666544322 7888999988877 456788889999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH
Q 047659 481 MYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRG-LTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA 559 (619)
Q Consensus 481 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 559 (619)
+.+ +-|..+|......-...|+.+.|..+|+-+.+.. .......|-+.|+.-...|.++.|..+++++.+.. +...
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~k 541 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVK 541 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccch
Confidence 886 6678888888888888999999999999998752 23345677788888888999999999999998852 3344
Q ss_pred HHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHh
Q 047659 560 IYNVLLNMLI-----KEC-----------NLDAALKLFGQLTD 586 (619)
Q Consensus 560 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 586 (619)
+|-.....-. ..| ....|..+|++...
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6655554433 334 56678888888764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-14 Score=142.30 Aligned_cols=331 Identities=15% Similarity=0.122 Sum_probs=262.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
...++.+...|++++|..++.++++.+|..+. +|..|+..|-++|+.+++...+-.+....++ |.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~--------------ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~ 207 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPI--------------AYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DY 207 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchh--------------hHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-Ch
Confidence 44556666779999999999999999998877 8999999999999999999999777776655 77
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH----HH
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK----IL 220 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----ll 220 (619)
..|..+.....+.|++.+|.-.|.++++.+|+. ...-+..|-+.|+...|...|.++.....+.|..-... ++
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999933 66677888999999999999999999853333333333 34
Q ss_pred HHHHhcCCcchHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------------
Q 047659 221 KRLCINGQIGNASSLFDVLLLV-GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV------------------- 280 (619)
Q Consensus 221 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~------------------- 280 (619)
+.+...++-+.|.+.++..... +-..+...++.++..+.+...++.+......+......
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 5566677779999998887752 22345667889999999999999999988888762222
Q ss_pred --------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 047659 281 --------PDLIIYSILIDGLFKAGRLKEGNELLLTALDRG--LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFL 350 (619)
Q Consensus 281 --------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 350 (619)
++..+ -.+.-++.+....+....+.......+ +.-+...|..+..++...|.+..|+.+|..+.....-
T Consensus 368 ~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 368 CEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred ccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 22222 123334455556666666666666666 3445778889999999999999999999999987555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047659 351 PNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMI 415 (619)
Q Consensus 351 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 415 (619)
-+...|-.+..+|...|.+++|.+.|+.+....+. +...-..+...+.+.|+.++|.+.+..+.
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 57788999999999999999999999999877322 34455667778889999999999998876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-16 Score=144.83 Aligned_cols=478 Identities=12% Similarity=0.127 Sum_probs=308.4
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHhhCCccc--------hHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV-QRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--------YEFL 184 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~l 184 (619)
+...|++.|.......+|+..|+-+.+...-|+...+ ..+..++.+...+.+|++.|+-.+..-|++ .+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 4556677788888899999999998887777776654 457778889999999999999888776622 5555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChh--------hHHHHHH
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVV--------TFSTLIN 256 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~l~~ 256 (619)
...+.+.|+++.|+.-|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+.....||.. .-..|+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 56677899999999999998887 5776665556666667788889999999887542222221 1111222
Q ss_pred HHHhcCCH--------HHHHHHHH---HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047659 257 AFCKEAKL--------EKAFQLYN---LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVM 325 (619)
Q Consensus 257 ~~~~~~~~--------~~a~~~~~---~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 325 (619)
--.++..+ ..|.+..- .+..--+.|+-. .| .+-+.+.++.-.-..+..+. --.-.
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dl--ei~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDL--EINKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhh--hhhHH
Confidence 11111111 11111111 111111111110 00 11122222211111000000 01112
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047659 326 DAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG-LC-QQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGK 403 (619)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 403 (619)
.-+.+.|+++.|.+++.-..+..-+.-...-+.|-.. |. -..++..|.++-+........ +......-.+.-..+|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCc
Confidence 3466788888888888777665322222222222222 22 234566666666655433111 22222112222334678
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHhc----cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 404 LRDGFSLYDNMIKRGLKPDAVVCSLLING----LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLM 479 (619)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 479 (619)
+++|...+++.....-......|+.-+.. .+++|+..|-.+...- ..+..+.-.+...|-...++..|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 88888888887765333333333333322 7777877776554321 126677778888999999999999999877
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH
Q 047659 480 GMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA 559 (619)
Q Consensus 480 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 559 (619)
... ++.|+.....|...|-+.|+-..|.+.+-+--. -++-|..+..++..-|....-+++++.+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 654 467888999999999999999999988766554 3567889999999999999999999999998865 689999
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcccccch
Q 047659 560 IYNVLLNMLI-KECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCLIDGY 614 (619)
Q Consensus 560 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 614 (619)
-|..++..|. +.|++++|.++++...++ ++-|...+..|++.+..+|-+...++
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key 715 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEY 715 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHH
Confidence 9999987775 589999999999999864 78899999999999999998876654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-13 Score=127.61 Aligned_cols=501 Identities=11% Similarity=0.005 Sum_probs=391.3
Q ss_pred CCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHH
Q 047659 46 NNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYV 123 (619)
Q Consensus 46 ~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (619)
.+...=..+++.+++ |.+...|... ....+.+.|+-++.++++--|.+.+ |..+|.
T Consensus 360 ~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAveccp~s~d------------------LwlAla 417 (913)
T KOG0495|consen 360 SDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVECCPQSMD------------------LWLALA 417 (913)
T ss_pred hHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHhccchHH------------------HHHHHH
Confidence 344445667777776 6665655543 4456777799999999998775544 445566
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh----hCCc----cchHHHHHHHHhcCCHH
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR----GKGF----CVYEFLMNGLLRKGVIE 195 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~ 195 (619)
+..-++.|..+++...+. ++.++..|..-...--.+|+.+...+++.+.+ ..|. +.|..-...|-..|.+-
T Consensus 418 rLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 778889999999999887 55699999999988889999999888887743 2333 22777778888889999
Q ss_pred HHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 196 NAFHMHRQVIQRGFVP--NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNL 273 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 273 (619)
.+..+....+..|+.- -..+|..-...|.+.+.++-|+.+|...++-- +.+...|......--..|..++...+|++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999988887543 34588888899999999999999999988753 33667787777777788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 047659 274 MMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNV 353 (619)
Q Consensus 274 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 353 (619)
....- +-....|......+-..|+...|..++....+.... +...|-.-+..-..+.+++.|..+|.+.... .|+.
T Consensus 576 av~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 576 AVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred HHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 98863 335566777777888899999999999999988655 7888999999999999999999999998875 5777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-hHHHHHh
Q 047659 354 ISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPS-LLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV-VCSLLIN 431 (619)
Q Consensus 354 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~ 431 (619)
..|..-+...--.+..++|.+++++.++. .|+ ...|-.+.+.+.+.++.+.|...|..-.+. -|... .|..+..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHH
Confidence 88877777777789999999999998876 444 346777888899999999999888765443 34333 3333322
Q ss_pred c-----cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 047659 432 G-----LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSS 506 (619)
Q Consensus 432 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 506 (619)
. .+-.|..+++...-.++. +...|-..|.+-.+.|+.+.|..+..+..... +.+...|..-|....+.++-..
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchH
Confidence 2 677889999988877655 78899999999999999999999988776552 5566778887877777666544
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 507 AILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 507 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
....+++. .-|.+....+...+....+++.|.+.|.+.++.+. .+..+|..+...+.+.|.-++-.+++.+...
T Consensus 806 s~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 806 SIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44444433 44777788888889999999999999999998642 2566888899999999998999999998876
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-14 Score=126.95 Aligned_cols=434 Identities=14% Similarity=0.127 Sum_probs=291.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc----hHHHHHHHHh--cCCHHHH-HHHHHHHHHCCCCCChhhHHHH
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV----YEFLMNGLLR--KGVIENA-FHMHRQVIQRGFVPNIVTCNKI 219 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~--~~~~~~A-~~~~~~~~~~~~~~~~~~~~~l 219 (619)
+.+-+.++.. ..+|...++.-+|+.|...+.++ -..+++..+. ..++--| .+.|-.|...| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455555554 35788889999999999988744 3344443332 2232222 23444444444 3444444
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047659 220 LKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRL 299 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 299 (619)
+.|.+.+ ++-+. .+.+..++.++|.++++.-..+.|.++|++......+.+..+||.+|.+-.-..
T Consensus 191 -----K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-- 256 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-- 256 (625)
T ss_pred -----ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc--
Confidence 2333322 33333 244778999999999999999999999999988888889999999988754332
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHH
Q 047659 300 KEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGR----AVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVE-ACG 374 (619)
Q Consensus 300 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~ 374 (619)
..+++.+|......||..|||+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 257 --~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 257 --GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred --cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 27788999999999999999999999999998764 45778889999999999999999999988887754 444
Q ss_pred HHHHHHHC----CCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCH---hhHHHHHhc-----cH
Q 047659 375 LFGQVLIR----RLE---P-SLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRG----LKPDA---VVCSLLING-----LM 434 (619)
Q Consensus 375 ~~~~~~~~----~~~---~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~ll~~-----~~ 434 (619)
++.++... ..+ | +...+...+..|.+..+.+-|.++..-+.... +.|+. +-|..+... ..
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 44444432 122 2 44556777888888888888888776654321 12221 112222221 66
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-CH--------H
Q 047659 435 GDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQG-SL--------S 505 (619)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~ 505 (619)
+.....++.+.-.-..|+..+...++.+..-.|.++-.-++|..+...|..-+...-..++..+++.. +. .
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~ 494 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ 494 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 77777888888877788888888888888889999988999988888775555555444555555433 11 1
Q ss_pred H-----HHHHH-------HHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC-C---cCHHHHHHHHHHHH
Q 047659 506 S-----AILLF-------FQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGV-A---PDIAIYNVLLNMLI 569 (619)
Q Consensus 506 ~-----A~~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~l~~~~~ 569 (619)
. |..++ .++.+.. ......+.+.-.+.+.|+.++|.+++..+.+.+- - |......-+++...
T Consensus 495 ~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 495 VAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 0 11111 2233333 3444567777778999999999999999866432 2 33334446677778
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047659 570 KECNLDAALKLFGQLTDRGLEPDIITYNTIICGY 603 (619)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 603 (619)
+..++-.|...++-|...+...-...-+.+...|
T Consensus 573 ~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDF 606 (625)
T ss_pred hcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhc
Confidence 8899999999999998765443333444444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-14 Score=131.25 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=187.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 047659 257 AFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFK--AGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDV 334 (619)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 334 (619)
-+.++|+++.|.++++.+.+.+-+.-...-+.|-..+.- -.++..|...-+.....+ .-+....+.-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 456788888888888877765333222222222222222 235556665555554332 11333333333344567888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047659 335 GRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNM 414 (619)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 414 (619)
++|.+.|++.....-.-....|+ +.-.+-..|+.++|++.|-++..- +.-+..+...+.+.|....+...|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 88888888887653222222222 222455678888888887666432 1225556666777777777777777777554
Q ss_pred HHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHH
Q 047659 415 IKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVL 494 (619)
Q Consensus 415 ~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 494 (619)
.. +.|+ |+.+.+.|.+.|-+.|+-..|.+.+-.--.. ++-+..+...|
T Consensus 585 ~s--lip~-----------------------------dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 585 NS--LIPN-----------------------------DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred cc--cCCC-----------------------------CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 33 3443 7788899999999999999998876544333 36688888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-ccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 047659 495 IRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF-KGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECN 573 (619)
Q Consensus 495 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 573 (619)
..-|....-+++++.+|++..- +.|+..-|..++..|. +.|++..|..+++..-+. ++-|..++.-|++.+...|-
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 8889999999999999998764 5899999999888775 679999999999998775 66688899999998887774
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-14 Score=137.80 Aligned_cols=291 Identities=9% Similarity=-0.044 Sum_probs=170.6
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV 150 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 150 (619)
+......|+++.|.+.+.+..+..|.+.- .+...+.++.+.|+++.|.+.++++.+..+.++....
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~~~~~--------------~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~ 156 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAAEPVL--------------NLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE 156 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCCCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH
Confidence 34556778888888888877776554332 4556677777888888888888887765444333344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-HHHHHH---
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN-KILKRL--- 223 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~--- 223 (619)
......+...|+++.|...++.+.+..| ++ +..+...+...|+++.|.+.+..+.+.+.. +...+. .-...+
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 4457777788888888888888888777 33 667777778888888888888888777533 222221 111111
Q ss_pred HhcCCcchHHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHH--HHhcC
Q 047659 224 CINGQIGNASSLFDVLLLVGPK---PNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIY-SILIDG--LFKAG 297 (619)
Q Consensus 224 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~--~~~~~ 297 (619)
...+..++..+.+..+....+. .+...+..+...+...|+.++|.+++++..+.. ||.... ..++.. ....+
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCC
Confidence 2222223333344444433221 255666666677777777777777777776642 222210 001111 12235
Q ss_pred CHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 298 RLKEGNELLLTALDRGLKLDV--VVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGL 375 (619)
Q Consensus 298 ~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 375 (619)
+.+.+.+.++...+.... |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++
T Consensus 314 ~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555666666555544222 33 444556666666666666666666322222345666666666666666666666666
Q ss_pred HHHH
Q 047659 376 FGQV 379 (619)
Q Consensus 376 ~~~~ 379 (619)
+++.
T Consensus 393 ~~~~ 396 (409)
T TIGR00540 393 RQDS 396 (409)
T ss_pred HHHH
Confidence 6654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-13 Score=131.97 Aligned_cols=253 Identities=9% Similarity=0.023 Sum_probs=107.3
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE 195 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~ 195 (619)
..+..+.|+++.|.+.++++.+..+.+...........+...|+++.|...++++.+.+| ++ ...+...|.+.|+++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 334455666666666666665533221112222234555556666666666666555555 22 555555555555555
Q ss_pred HHHHHHHHHHHCCCCCChh-------hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047659 196 NAFHMHRQVIQRGFVPNIV-------TCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF 268 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 268 (619)
+|.+++..+.+.+..++.. +|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555555555554221111 1111111111222222222222222211 1223334444444444444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 269 QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
+++++..+. +|+.... ++.+....++.+++.+..+...+..+. |+.....+...+.+.+++++|.+.|+...+.
T Consensus 284 ~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~- 357 (398)
T PRK10747 284 QIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ- 357 (398)
T ss_pred HHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 444444432 2222111 111122234444444444444433222 3334444444444444444444444444442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 349 FLPNVISYSILIKGLCQQGRLVEACGLFGQV 379 (619)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (619)
.|+...+..+...+.+.|+.++|.+++++.
T Consensus 358 -~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 358 -RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.4e-15 Score=140.23 Aligned_cols=271 Identities=14% Similarity=0.032 Sum_probs=213.2
Q ss_pred HccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH------------------
Q 047659 43 IKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR------------------ 102 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------ 102 (619)
..+-+..+|+..|..++. .+..++...+++.|...+++++|++.|+.+.+..|.-.+.+.
T Consensus 330 ~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 346678899999999776 777788889999999999999999999999998885444321
Q ss_pred --HHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--
Q 047659 103 --LFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-- 178 (619)
Q Consensus 103 --~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 178 (619)
-+...-|..+.+|.+++.+|.-+++++.|+.+|+++++.++. ...+|+.+..-+.....+|.|...|+.++..+|
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 122335667778888888888888888888888888886543 567778888888888888888888888888888
Q ss_pred -cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047659 179 -CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINA 257 (619)
Q Consensus 179 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (619)
+.|..+...|.+.++++.|+-.|+.+++.+ +.+......+...+.+.|+.++|+++++++...+++ |+..--..+..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 448888888888888888888888888876 666667777778888888888888888888876554 55555556667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047659 258 FCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLD 317 (619)
Q Consensus 258 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 317 (619)
+...+++++|++.++++++. ++-+...|..+.+.|.+.|+.+.|+.-|.-+.+.++++.
T Consensus 567 l~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 77788888888888888875 333566777788888888888888888887777654433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-13 Score=118.09 Aligned_cols=271 Identities=15% Similarity=0.156 Sum_probs=138.1
Q ss_pred HccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHH
Q 047659 43 IKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIE 120 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (619)
+-.+++++|.++|-.+.+ +.+.++...+++.+.+.|..|.|+.+.+..+..-.-+.+ . ..+ +...|++
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~-q----r~l-----Al~qL~~ 115 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE-Q----RLL-----ALQQLGR 115 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH-H----HHH-----HHHHHHH
Confidence 335566666666666665 444455556666666666666666665555543221111 0 000 4445556
Q ss_pred HHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--------hHHHHHHHHhcC
Q 047659 121 NYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--------YEFLMNGLLRKG 192 (619)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~l~~~~~~~~ 192 (619)
-|...|-++.|.++|..+.+.+ ..-..+...++.+|....+|++|++.-+++.+.+++. |..+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 6666666666666666665432 2244555666666666666666666666666555522 333444444455
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
+++.|..++.+..+.+ +..+.+--.+.+.+...|+++.|++.++.+.+.++.--..+...|..+|.+.|+.++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5566666666655553 333444444445555556666666666665554443334445555555556666655555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047659 273 LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYV 329 (619)
Q Consensus 273 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (619)
.+.+.... ...-..+........-.+.|...+.+-... +|+...+..++....
T Consensus 274 ~~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 274 RAMETNTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHccCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 55543222 222222222222223333344333333333 345555555555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-13 Score=131.17 Aligned_cols=281 Identities=10% Similarity=-0.002 Sum_probs=224.4
Q ss_pred ccCCchhHHHHHHHhhc-CCCCccHHHH-HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHN-CVSSPNIAQL-IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (619)
-.|+++.|.+.+..... .+++..+..+ +....+.|+++.|...++++.+..|++... .....+..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~-------------~~l~~a~l 162 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP-------------VEITRVRI 162 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH-------------HHHHHHHH
Confidence 37999999999998776 3445555444 555589999999999999999887765321 22344788
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc----------hHHHHHHHHh
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV----------YEFLMNGLLR 190 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~----------~~~l~~~~~~ 190 (619)
+...|+++.|...++++.+..|. ++.....+...|.+.|++++|.+++..+.+... +. |..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998766 889999999999999999999999999998776 21 2223333334
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
..+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+.. ..++.+....++.+++++.
T Consensus 242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHH
Confidence 55566666777776554 2568888899999999999999999999999874 33442 1233444466999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 271 YNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 271 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
.+...+.... |...+..+.+.|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 317 ~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999887433 6778889999999999999999999999986 68889999999999999999999999987654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-13 Score=116.84 Aligned_cols=222 Identities=15% Similarity=0.122 Sum_probs=124.0
Q ss_pred ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC---HHhHHH
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS---PDLVQR 152 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 152 (619)
-.++.++|..+|-.+++.+|.+.+ +..+|+..|.+.|.++.|+++.+.+.++.-.+. ..+...
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e--------------~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q 112 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFE--------------AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ 112 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhH--------------HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 356677777777777777666666 666777777777777777777777765421111 123444
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHh
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV----TCNKILKRLCI 225 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~ 225 (619)
+.+-|...|-+++|..+|..+...+. .....++..|-...++++|+++.+++.+.+..+... .|--+...+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 55566666666666666666655443 225566666666666666666666655554222211 12223333334
Q ss_pred cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 226 NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNEL 305 (619)
Q Consensus 226 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 305 (619)
..+.+.|..++.+..+.+++ .+..-..+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45555666666665554222 22333334455555666666666666665554443344555555666666666666666
Q ss_pred HHHHHHc
Q 047659 306 LLTALDR 312 (619)
Q Consensus 306 ~~~~~~~ 312 (619)
+..+.+.
T Consensus 272 L~~~~~~ 278 (389)
T COG2956 272 LRRAMET 278 (389)
T ss_pred HHHHHHc
Confidence 6555554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-13 Score=132.80 Aligned_cols=290 Identities=12% Similarity=0.022 Sum_probs=219.7
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
....|+++.|.+.+..... |.....+...+.++.+.|+++.|.+.++++.+..|.+.-. +....+
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~-------------~~~~~a 160 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL-------------VEIART 160 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH-------------HHHHHH
Confidence 3569999999999998886 3334455677888999999999999999998876654210 344568
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hH----HHHHHHHhcC
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YE----FLMNGLLRKG 192 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~----~l~~~~~~~~ 192 (619)
..+...|+++.|.+.++.+.+..|. ++..+..+...+.+.|++++|.+.+..+.+.+. +. +. .........+
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998766 788999999999999999999999999998865 22 21 1222223333
Q ss_pred CHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHH
Q 047659 193 VIENAFHMHRQVIQRGF---VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTF-STLINAFCKEAKLEKAF 268 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~ 268 (619)
..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 33444445555555421 247888999999999999999999999999986443222111 11222233457788899
Q ss_pred HHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 269 QLYNLMMEMDLVPDL--IIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
+.++...+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 320 ~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 320 KLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999888775322 44 567788999999999999999999655544578888899999999999999999999997643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-10 Score=107.52 Aligned_cols=466 Identities=11% Similarity=0.136 Sum_probs=285.6
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
-.-++.|......+..+|+...-+..|++++..-|.+.. +.+|...+......|-++-++.++++.++
T Consensus 99 HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH------------~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 99 HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQH------------DRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhh------------ccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 467788888888899999999999999999988775533 12777888888888889999999999976
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-------cc---hHHHHHHHHhcCCHHH---HHHHHHHHHHC
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-------CV---YEFLMNGLLRKGVIEN---AFHMHRQVIQR 207 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~---~~~l~~~~~~~~~~~~---A~~~~~~~~~~ 207 (619)
. +|..-..-+..+++.+++++|.+.+...+.... +. |..+....+++-+.-. ..++++.++..
T Consensus 167 ~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r 242 (835)
T KOG2047|consen 167 V----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR 242 (835)
T ss_pred c----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence 4 444567778888899999999999988765432 11 5555444444433222 22344444433
Q ss_pred CCCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------------------C
Q 047659 208 GFVPN--IVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA----------------------K 263 (619)
Q Consensus 208 ~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~ 263 (619)
-+| ...|..|.+.|.+.|.+++|.++|++.... .....-|..+.++|+... +
T Consensus 243 --ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 243 --FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred --CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 233 357888999999999999999999988754 223444555555554321 1
Q ss_pred HHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHH
Q 047659 264 LEKAFQLYNLMMEMDL-----------VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL------DVVVFSSVMD 326 (619)
Q Consensus 264 ~~~a~~~~~~m~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~ 326 (619)
++-...-|+.+.+.+. +.+...|..-+. ...|+..+-...+.++.+. +.| -...|..+..
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 2222333333332210 112223332222 2245566666666666643 111 2346778888
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------C
Q 047659 327 AYVGIGDVGRAVQTYDRMLNGGFLPN---VISYSILIKGLCQQGRLVEACGLFGQVLIRRLE-----------------P 386 (619)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~ 386 (619)
.|-..|+++.|..+|++..+...+-- ..+|......=.+..+++.|.++++....-... .
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 89999999999999999887643322 345666666667788889999888876532111 1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh--HHHHHhc--cHHHHHHHHHHHHhCCCCCCH-hhHHHHHH
Q 047659 387 SLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVV--CSLLING--LMGDALRFFFQSVRMTLIPNL-FIFNTLMD 461 (619)
Q Consensus 387 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~--~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 461 (619)
+...|...+..--..|-++....+++.+....+...... |..++.. .++++.+++++-+..-.-|+. ..|++.+.
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 233455555555567788888888888887654332222 3333332 677888888776654444444 46666666
Q ss_pred HHHh---cCChhHHHHHHHHHhhCCCCCCHhhHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHH
Q 047659 462 GCCR---LKRATDTVKLFMLMGMYNIKPDVITHTVLI--RGIASQGSLSSAILLFFQMLKRGLTPD--VITYSAIIHGLF 534 (619)
Q Consensus 462 ~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 534 (619)
-+.+ ...++.|..+|++..+ |.+|...-+.-|+ ..--..|-...|+.+|+++.. ++++. ..+|+..|.-..
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence 5554 2357888899988887 4444332222222 112235777778888887654 33332 234555554333
Q ss_pred ccCChHHHHHHHHHHHH
Q 047659 535 KGKNISVGLHMFKLMER 551 (619)
Q Consensus 535 ~~g~~~~A~~~~~~~~~ 551 (619)
..=-+.....+++++.+
T Consensus 634 e~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHhCCcccHHHHHHHHH
Confidence 32223334444444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-10 Score=107.88 Aligned_cols=538 Identities=12% Similarity=0.075 Sum_probs=355.6
Q ss_pred HHhhccccccccCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhc----CCCCccHHHHHHHHHccCChhHHHH
Q 047659 10 TVWRSINKCYCSESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN----CVSSPNIAQLIHVLLQSDMRDVASH 85 (619)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (619)
.+|..+++|+-..+..-.+ =|..-..-+..+.++|+...-...|+.++. ....+.|...+.-....|-++.+..
T Consensus 82 ~~~~~vn~c~er~lv~mHk--mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~r 159 (835)
T KOG2047|consen 82 PAYESVNNCFERCLVFMHK--MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIR 159 (835)
T ss_pred hHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHH
Confidence 3455556554333322111 233333444556779999999999998876 4456788888888899999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC------CCCCHHhHHHHHHHHHh
Q 047659 86 VFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG------IYLSPDLVQRLMSCLVD 159 (619)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 159 (619)
.|++.++-.|.. ...-+..+...+++++|.+.+...+... .+.+-..|..+.....+
T Consensus 160 vyrRYLk~~P~~-----------------~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~ 222 (835)
T KOG2047|consen 160 VYRRYLKVAPEA-----------------REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQ 222 (835)
T ss_pred HHHHHHhcCHHH-----------------HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHh
Confidence 999999987764 4466778889999999999998885321 22356677777777765
Q ss_pred cCCh---hHHHHHHHHHhhCCccc----hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----
Q 047659 160 SNSV---GQYYKLCRAMRGKGFCV----YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING----- 227 (619)
Q Consensus 160 ~~~~---~~A~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----- 227 (619)
..+. -....+++....+.+|- |.+++..|.+.|.+++|..++++.+.. ..+..-|+.+.+.|+.-.
T Consensus 223 ~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~ 300 (835)
T KOG2047|consen 223 NPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVA 300 (835)
T ss_pred CcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHH
Confidence 5443 23455666666666643 999999999999999999999999887 455666666666655321
Q ss_pred -----------C------cchHHHHHHHHHhCCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047659 228 -----------Q------IGNASSLFDVLLLVGP-----------KPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDL 279 (619)
Q Consensus 228 -----------~------~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 279 (619)
+ ++....-|+.+....+ +.++..|..-+.. ..|+..+-...|.++... +
T Consensus 301 ~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-v 377 (835)
T KOG2047|consen 301 AKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-V 377 (835)
T ss_pred HHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-c
Confidence 1 2223333444433211 1133344443333 356777788888887764 3
Q ss_pred CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--
Q 047659 280 VPD------LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLD---VVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG-- 348 (619)
Q Consensus 280 ~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 348 (619)
.|. ...|..+.+.|-..|+.+.|..+|++......+-- ..+|..-...-.+..+++.|+++.+......
T Consensus 378 dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 378 DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 332 34678888999999999999999999987654422 3455556666677888999999888776431
Q ss_pred ---------CCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047659 349 ---------FLP------NVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 349 ---------~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 413 (619)
.++ +...|...+..--..|-++....+++.+.+..+. ++.........+-.+.-++++.+++++
T Consensus 458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 111 2234455555555578888999999999887655 333222223334455667888888877
Q ss_pred HHHcCCCCCHh-hHHHHHhc--------cHHHHHHHHHHHHhCCCCCCHhhHHHH--HHHHHhcCChhHHHHHHHHHhhC
Q 047659 414 MIKRGLKPDAV-VCSLLING--------LMGDALRFFFQSVRMTLIPNLFIFNTL--MDGCCRLKRATDTVKLFMLMGMY 482 (619)
Q Consensus 414 ~~~~~~~~~~~-~~~~ll~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~ 482 (619)
-+..-.-|... .|+..+.. .++.|..+|++..+ +.+|...-+--| ...--+.|-...|+.++++....
T Consensus 537 gI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 537 GISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred CCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 65543334433 34444432 89999999999998 444443222111 11122468888999999987543
Q ss_pred CCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH---HHHHHHHHccCChHHHHHHHHHHHH-CCCCc
Q 047659 483 NIKPD--VITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITY---SAIIHGLFKGKNISVGLHMFKLMER-NGVAP 556 (619)
Q Consensus 483 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 556 (619)
+++. ...||..|.-....=-+.....+|+++++. -|+...- .-..+.-.+.|.++.|..++....+ .....
T Consensus 616 -v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~ 692 (835)
T KOG2047|consen 616 -VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV 692 (835)
T ss_pred -CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence 3333 346888876655544566678888888875 5665433 3344455678999999999988776 34555
Q ss_pred CHHHHHHHHHHHHHcCCHHH
Q 047659 557 DIAIYNVLLNMLIKECNLDA 576 (619)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~ 576 (619)
+...|.+.=..-.+.|+-+.
T Consensus 693 ~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 693 TTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred ChHHHHHHHHHHHhcCCHHH
Confidence 77889999888999999433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.2e-16 Score=143.94 Aligned_cols=254 Identities=15% Similarity=0.129 Sum_probs=81.4
Q ss_pred HHHHHHHccCCchhHHHHHHHhh-c---CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 37 AILANLIKTNNPTPAIQFFKWTH-N---CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
.+...+.+.|++++|+++++... . +.++..|..++.+....++++.|+..|++++..++.++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~------------- 79 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ------------- 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------
Confidence 44555667788888888885432 2 456666777777777788888888888888776655444
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cc--hHHHHHH
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CV--YEFLMNG 187 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~l~~~ 187 (619)
.+..++.. ...+++++|.++++...+.. +++..+...+..+.+.++++++.++++.+..... +. |......
T Consensus 80 -~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 80 -DYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred -cccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 55566665 67778888887777766542 3556666777777777777777777777654331 22 5556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 267 (619)
+.+.|+.++|++.++++++.. +.|....+.++..+...|+.+++.++++...... +.|+..+..+..++...|+.++|
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccc
Confidence 666777777777777776663 3345566666666666666666666666665542 33445556666666666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 268 FQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
+..|+....... .|+.+...+..++...|+.++|.++.++..
T Consensus 234 l~~~~~~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 234 LEYLEKALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHST-T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccc
Confidence 777766665422 256666666666666666666666665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-11 Score=109.96 Aligned_cols=326 Identities=11% Similarity=0.036 Sum_probs=171.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhh-HHHH
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPN-IVT-CNKI 219 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~-~~~l 219 (619)
.|+..+...+.++.+.|....|+..|...+...|-. |..+..... +. +........+ +.| ... --.+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~----e~~~~l~~~l-~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DI----EILSILVVGL-PSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hH----HHHHHHHhcC-cccchHHHHHHH
Confidence 355555555566666666667777666666655522 333322221 11 2222222211 111 111 1112
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 047659 220 LKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV--PDLIIYSILIDGLFKAG 297 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~ 297 (619)
..++....+.+++..-.+.....|.+.+...-+....+.....++++|+.+|+++.+.++- -|..+|..++- .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 3344444455566655555655555444433333444444566667777777666665211 14455555542 2222
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047659 298 RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFG 377 (619)
Q Consensus 298 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 377 (619)
+.. +..+.+-.-.--+--+.|+..+.+.|+-.++.+.|...|+...+.+ +.....|+.+.+-|...++...|++-++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 111 1111111110011233455556666666666667777776666653 2244556666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHH
Q 047659 378 QVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFN 457 (619)
Q Consensus 378 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (619)
.+.+-.+. |...|-.+.++|.-.+.+.=|+-.|++..+. +|+ |...|.
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPn-----------------------------DsRlw~ 436 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPN-----------------------------DSRLWV 436 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCC-----------------------------chHHHH
Confidence 66655322 5556666666666666666666666665553 343 566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 458 TLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLK 516 (619)
Q Consensus 458 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 516 (619)
+|..+|.+.++.++|++.|+.....| ..+...+..+...|-+.++.++|...|++.++
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666666666666666666666554 33445666666666666666666666665544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=142.34 Aligned_cols=256 Identities=15% Similarity=0.126 Sum_probs=59.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhc--CCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQF--GKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
.++.++.+.|++++|.+.+++.+... |.+.+ .|..++..+...++++.|.+.++++...+.. +
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~--------------~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~ 77 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPE--------------YWRLLADLAWSLGDYDEAIEAYEKLLASDKA-N 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc--------------ccccccccccccccccccccccccccccccc-c
Confidence 34555555555555555554443322 22222 4444445555555555555555555544333 3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHH
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQVIQRG-FVPNIVTCNKILKRL 223 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~ 223 (619)
+..+..++.. ...+++++|.++++...+..+++ +...+..+...++++++.++++.+.... .+.+...|..+...+
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred cccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 4444444444 45555555555554443333322 4444444445555555555555444321 123344444444444
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047659 224 CINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGN 303 (619)
Q Consensus 224 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 303 (619)
.+.|+.++|.+.+++..+..|. |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|.
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccc
Confidence 5555555555555555443221 34444444444445555554444444444331 223333444444444555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 304 ELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
.++++..+.... |+.+...+..++...|+.++|.++..+
T Consensus 235 ~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 235 EYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHSTT--HHHHHHHHHHHT--------------
T ss_pred cccccccccccc-ccccccccccccccccccccccccccc
Confidence 555554443221 444444444555555555555444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-12 Score=115.91 Aligned_cols=429 Identities=11% Similarity=0.039 Sum_probs=252.5
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS-PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLL 189 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~ 189 (619)
.+-..+.-|.+.|++++|+++|...++. .|+ +..|.....+|...|+|++.++-..+.++.+|+- +..-.+++-
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 4556677889999999999999999985 455 7888999999999999999999999999999943 777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh-CC--CCCChhhHHHHHHHHHhcCCHHH
Q 047659 190 RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL-VG--PKPNVVTFSTLINAFCKEAKLEK 266 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~ 266 (619)
..|++++|+.=..-.--.+--.|..+--.+=+.+- ..|..-.++-.+ .+ .-|+.....+....+...-
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~---- 265 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP---- 265 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc----
Confidence 99999888753332221111112211111111111 122222222222 11 1233333333333321100
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH----h-cCCHHHHHHHHHHHHHcC-CC-----CC------HHHHHHHHHHHH
Q 047659 267 AFQLYNLMMEMDLVPDLIIYSILIDGLF----K-AGRLKEGNELLLTALDRG-LK-----LD------VVVFSSVMDAYV 329 (619)
Q Consensus 267 a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~-~~~~~~a~~~~~~~~~~~-~~-----~~------~~~~~~ll~~~~ 329 (619)
......+.......+..++. . ...+..+.+.+.+-.... .. .| ..+.......+.
T Consensus 266 --------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 --------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred --------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 00000000011111111110 0 011222222222211100 00 01 111111122234
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 047659 330 GIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFS 409 (619)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 409 (619)
-.|+.-.+.+-|+........++ ..|-.+..+|....+.++-.+.|.+..+.+.. ++.+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 56788888888888887643322 22667777788888888888888888876544 45556555666666677888888
Q ss_pred HHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh
Q 047659 410 LYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVI 489 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 489 (619)
-|+..+.. .|. +...|-.+..+.-+.+++++++..|++..+. ++..+.
T Consensus 416 DF~Kai~L--~pe-----------------------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~E 463 (606)
T KOG0547|consen 416 DFQKAISL--DPE-----------------------------NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPE 463 (606)
T ss_pred HHHHHhhc--Chh-----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCch
Confidence 88777664 333 4455555666666777888888888887765 355667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HH--hHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHH
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTPD-------VI--TYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAI 560 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 560 (619)
.|+.....+...++++.|.+.|+..++. .|+ .. +.-.++- +.-.+++..|.++++...+.+.+ ....
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A 539 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQA 539 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHH
Confidence 7888888888888888888888887763 222 11 1111221 12347888888888888775322 4457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047659 561 YNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYC 604 (619)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 604 (619)
|..|...-...|+.++|+++|++.... ..|-.-++++|+
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a~s 578 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHAYS 578 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHHHH
Confidence 788888888888888888888886642 344444555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-11 Score=110.36 Aligned_cols=365 Identities=13% Similarity=0.088 Sum_probs=275.3
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh-------------cCCCcc--cHHHHHHHHHHc
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS-------------LGDFGC--DYSFLIENYVRI 125 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~l~~~~~~~ 125 (619)
..+.......+-++...|....|+..|...+...|..|.++..+... .+.... .-.-+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 44445556677788899999999999999999999988876443322 111110 112344566667
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc------cchHHHHHHHHhcCCHHHHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF------CVYEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~ 199 (619)
...+++++-.+.....|.+.++..-+..+.+.-.+.+++.|+.+|+++.+.+| |.|..++-. +..+-..+ -
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~skLs-~ 317 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSKLS-Y 317 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHHHH-H
Confidence 78889999999999988877777778888888889999999999999999998 225554332 22222111 1
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047659 200 MHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDL 279 (619)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 279 (619)
+.......+ +-.++|+..+.+.|+-.++.++|...|+..++.++. ....|+.+.+-|....+...|.+-|+...+-+.
T Consensus 318 LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 318 LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 111222222 445677888889999999999999999999987544 577899999999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047659 280 VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSIL 359 (619)
Q Consensus 280 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (619)
. |-..|-.|.++|.-.+...-|+-.|++.....+. |...|.+|..+|.+.++.++|.+.|......|-. +...+..+
T Consensus 396 ~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~L 472 (559)
T KOG1155|consen 396 R-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRL 472 (559)
T ss_pred h-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHH
Confidence 4 8899999999999999999999999999987544 8999999999999999999999999999987633 66889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhcc
Q 047659 360 IKGLCQQGRLVEACGLFGQVLIR----R-LEPSL-LTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL 433 (619)
Q Consensus 360 l~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 433 (619)
...|-+.++.++|...|++..+. | ..|.. ...--+...+.+.+++++|.......... .+ .
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~-----------e 539 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ET-----------E 539 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cc-----------h
Confidence 99999999999999999887653 2 22211 22233556777889999988766655443 22 2
Q ss_pred HHHHHHHHHHHHh
Q 047659 434 MGDALRFFFQSVR 446 (619)
Q Consensus 434 ~~~a~~~~~~~~~ 446 (619)
.++|..+++++..
T Consensus 540 ~eeak~LlReir~ 552 (559)
T KOG1155|consen 540 CEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-12 Score=117.46 Aligned_cols=396 Identities=12% Similarity=0.071 Sum_probs=241.7
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc-CCC-CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN-CVS-SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+......+.++|++++|+++|.++++ +++ +..|...+.+|...|+|++..+.-.++++.+|+...
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~K------------- 184 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVK------------- 184 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHH-------------
Confidence 44455566789999999999999999 444 788888999999999999999999999998887655
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH------------------HHh
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCR------------------AMR 174 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------------------~~~ 174 (619)
++..-..++-+.|++++|+.=..-..-.+.-.|..+--.+=+.+-+.+. ..+.+-+. ...
T Consensus 185 -Al~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 185 -ALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred -HHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 3444445555556655554322211111100011110000011100000 00000000 000
Q ss_pred hC------Cc-c-chHHHHHHHH--hcC---CHHHHHHHHHHHHHCC---CCCC---------hhhHHHHHHHHHhcCCc
Q 047659 175 GK------GF-C-VYEFLMNGLL--RKG---VIENAFHMHRQVIQRG---FVPN---------IVTCNKILKRLCINGQI 229 (619)
Q Consensus 175 ~~------~~-~-~~~~l~~~~~--~~~---~~~~A~~~~~~~~~~~---~~~~---------~~~~~~ll~~~~~~~~~ 229 (619)
.. ++ + ....+...+. ..+ .+..|.+.+.+-.... ...+ ..+.......+.-.|+.
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 00 00 0 0111111111 111 2333333332221110 0111 12222222334457888
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTA 309 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 309 (619)
-.|..-|+..+...+.++ ..|.-+...|...++.++..+.|......+.. ++.+|..-.....-.+++++|..-|++.
T Consensus 343 ~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998887654433 23777778888888999999999988887654 6677777777777788889999999888
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----
Q 047659 310 LDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLE---- 385 (619)
Q Consensus 310 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---- 385 (619)
....+. +...|..+.-+..+.+.+++++..|++.++. ++..+..|+.....+...++++.|.+.|+..++....
T Consensus 421 i~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 421 ISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 877544 5666777777777888899999999988876 5667788888888899999999999999888765211
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 047659 386 ---PSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDG 462 (619)
Q Consensus 386 ---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (619)
+.+.+-.+++..- =.+++..|..++....+.. |. ....|.+|...
T Consensus 499 ~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D--pk-----------------------------ce~A~~tlaq~ 546 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD--PK-----------------------------CEQAYETLAQF 546 (606)
T ss_pred cccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC--ch-----------------------------HHHHHHHHHHH
Confidence 1111111121111 1266667777776666542 21 44578888888
Q ss_pred HHhcCChhHHHHHHHHHhh
Q 047659 463 CCRLKRATDTVKLFMLMGM 481 (619)
Q Consensus 463 ~~~~~~~~~a~~~~~~~~~ 481 (619)
-.+.|+.++|+++|++...
T Consensus 547 ~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 8899999999999987643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-13 Score=128.09 Aligned_cols=288 Identities=15% Similarity=0.070 Sum_probs=193.9
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC--CCHHhHHH
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY--LSPDLVQR 152 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ 152 (619)
.-+=+..+|...|++..++..++.- +...++.+|...+++++|..+|+.+.+..+- .+.+.|..
T Consensus 330 ~s~y~~~~A~~~~~klp~h~~nt~w--------------vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST 395 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSHHYNTGW--------------VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYST 395 (638)
T ss_pred HHHHHHHHHHHHHHhhHHhcCCchH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHH
Confidence 3445677788888886666555432 6777888888888888888888888765432 24556666
Q ss_pred HHHHHHhcCChhHHHHHH-HHHhhCCc---cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047659 153 LMSCLVDSNSVGQYYKLC-RAMRGKGF---CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQ 228 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~-~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 228 (619)
.+.-+. -+-++..+ +.+.+.++ ++|-.+..+|.-.++.+.|++.|+++++.+ +....+|+.+..-+.....
T Consensus 396 ~LWHLq----~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 396 TLWHLQ----DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEE 470 (638)
T ss_pred HHHHHH----hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHH
Confidence 665542 12333333 33444444 348888888888888888888888887774 4467777777777777778
Q ss_pred cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 229 IGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
+|.|...|...+...+. +-..|.-+...|.+.++++.|+-.|+.+.+-+.. +.+....+...+.+.|+.++|++++++
T Consensus 471 ~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred HHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 88888888877543211 2334444566777888888888888877775433 556666666777777888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047659 309 ALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLE 385 (619)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 385 (619)
+...+.+ |+..--.....+...+++++|+..++++++. ++.+...+..+...|-+.|+.+.|+.-|..+.+...+
T Consensus 549 A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 549 AIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 7776544 5555555556666777888888888887775 2334555666777777778888887777777665443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-11 Score=106.00 Aligned_cols=448 Identities=12% Similarity=0.103 Sum_probs=253.6
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHH
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIEN 196 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~ 196 (619)
.-+....++..|+.+++--...+-+-...+-..+..++...|++++|...|..+..... +. +..+.-++.-.|.+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 34556678888888888776544332334455566777788888888888888665443 32 6677777777888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 197 AFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 197 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
|..+..... .++..-..+.....+.++-++-....+.+.+ ....--++.......-.+++|+++|+....
T Consensus 110 A~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 877665443 2333333445555566666666655555532 112223344333334457888888888876
Q ss_pred CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 047659 277 MDLVPDLIIYSILI-DGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVIS 355 (619)
Q Consensus 277 ~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 355 (619)
. .|+-...|..+ -+|.+..-++-+.++++-..+.- +-++...|.......+.=+-..|..-...+.+.+-..
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 4 24444444433 34567777777777777776652 2244445544444333322233333333333332110
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 047659 356 YSILIKGLCQQ-----GRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLI 430 (619)
Q Consensus 356 ~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 430 (619)
| ..+.-+++. ..-+.|++++--+.+. -|. .--.++-.|.+.+++.+|..+.+++... .|-......+.
T Consensus 253 ~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv 325 (557)
T KOG3785|consen 253 Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV 325 (557)
T ss_pred c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH
Confidence 1 112222222 2335555555554433 222 1223344456667777776666655432 33333333333
Q ss_pred hc----------cHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047659 431 NG----------LMGDALRFFFQSVRMTLIPNLF-IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIA 499 (619)
Q Consensus 431 ~~----------~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 499 (619)
.. .+.-|.+.|+-.-..+..-|.. --.++.+.+.-..++++.+..++.+...-...|...+| +..+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHH
Confidence 22 3444555555444443332222 22345555555667888888888777664444444443 567888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhH-HHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHHcCCHHHH
Q 047659 500 SQGSLSSAILLFFQMLKRGLTPDVITY-SAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA-IYNVLLNMLIKECNLDAA 577 (619)
Q Consensus 500 ~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A 577 (619)
..|.+.+|+++|-++....++ |..+| ..+.++|.+.++++.|+.++-.+.. ..+.. ....+..-|.+.+.+=-|
T Consensus 405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877754444 44455 4556677888888888776654432 11222 344555677888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 047659 578 LKLFGQLTDRGLEPDIITYNT 598 (619)
Q Consensus 578 ~~~~~~~~~~g~~p~~~~~~~ 598 (619)
-+.|+.+.. ..|++..|..
T Consensus 481 aKAFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 481 AKAFDELEI--LDPTPENWEG 499 (557)
T ss_pred HHhhhHHHc--cCCCccccCC
Confidence 888888776 5677766643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-11 Score=108.45 Aligned_cols=291 Identities=12% Similarity=0.078 Sum_probs=155.9
Q ss_pred ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMS 155 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 155 (619)
..|+|.+|++...+.-+..+.+.- .|..-+.+..+.|+.+.|-.++.++-+....++........+
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l--------------~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVL--------------AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHH--------------HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 456666666666665444333222 455555556666666666666666655433334444555555
Q ss_pred HHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchH
Q 047659 156 CLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNA 232 (619)
Q Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 232 (619)
.+..+|+++.|..-+..+.+.+| .+ .....++|.+.|++.....++..+.+.|.-.+...-.
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~--------------- 226 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR--------------- 226 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH---------------
Confidence 66666666666666666555555 22 4555555555555555555555555554333322100
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047659 233 SSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR 312 (619)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 312 (619)
....+|+.+++-....+..+.-...++..... .+.++..-.+++.-+.++|+.++|.++.++..++
T Consensus 227 -------------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~ 292 (400)
T COG3071 227 -------------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR 292 (400)
T ss_pred -------------HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 01124455555444444444444444444332 2334445555556666666666666666666665
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047659 313 GLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYS 392 (619)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 392 (619)
+..|+ -...-.+.+.++...-.+..++..+. .+-++..+.++...|.+.+.|.+|.+.|+...+. .|+..+|+
T Consensus 293 ~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~ 365 (400)
T COG3071 293 QWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYA 365 (400)
T ss_pred ccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHH
Confidence 54433 11122344555555555555554443 1224455666666666666666666666655544 56666666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 047659 393 SLIDGFCKSGKLRDGFSLYDNMIK 416 (619)
Q Consensus 393 ~ll~~~~~~~~~~~a~~~~~~~~~ 416 (619)
.+..++.+.|+..+|.++.++...
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 666666666666666666665543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-09 Score=103.44 Aligned_cols=453 Identities=12% Similarity=0.031 Sum_probs=294.1
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
....+++...+.+.+.++. |...++....+..+-..|+.++|...-+..+..++.+.- -|..++
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v--------------CwHv~g 82 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV--------------CWHVLG 82 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch--------------hHHHHH
Confidence 3467888888888888887 888888888888899999999999999988887766543 566777
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHH
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIEN 196 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ 196 (619)
-.+....++++|+.+|+.++..++. |...|.-+.-.-++.++++.....-....+..|.. |...+.++.-.|+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7777788999999999999987654 77888777777778888888888888888877722 8888888888999999
Q ss_pred HHHHHHHHHHCC-CCCChhhHHHHH------HHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047659 197 AFHMHRQVIQRG-FVPNIVTCNKIL------KRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQ 269 (619)
Q Consensus 197 A~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 269 (619)
|..+++...+.. ..|+...+.... ......|.+++|.+.+...... +......-.+-...+.+.+++++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 999999888774 245655554432 3445677888888777665432 22122333445567788899999999
Q ss_pred HHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHh
Q 047659 270 LYNLMMEMDLVPDLIIYS-ILIDGLFKAGRLKEGN-ELLLTALDRGLKLDVVVFSSV-MDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~ 346 (619)
++..+... .||..-|. .+..++.+..+.-++. .+|....+. + |....-..+ +.......-.+...+++..+.+
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 99999886 35555444 4444444333333333 555555443 1 111111111 1111112223445566777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHHH--HHHHHHHHhcCChHHHHHH
Q 047659 347 GGFLPNVISYSILIKGLCQQGRLVEACGLFGQVL----IRR----------LEPSLLTY--SSLIDGFCKSGKLRDGFSL 410 (619)
Q Consensus 347 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~ll~~~~~~~~~~~a~~~ 410 (619)
.|+++- +..+.+.|-.-...+-..++.-.+. ..| -+|+...| -.++..+-+.|+++.|...
T Consensus 317 Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 317 KGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred cCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 776543 2333333322111111111111111 111 13444444 4467788889999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhh
Q 047659 411 YDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVIT 490 (619)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 490 (619)
++....+ .|+ -...|..=...+...|+++.|..++++..+.. .+|...
T Consensus 394 Id~AIdH--TPT-----------------------------liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~I 441 (700)
T KOG1156|consen 394 IDLAIDH--TPT-----------------------------LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAI 441 (700)
T ss_pred HHHHhcc--Cch-----------------------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHH
Confidence 9888875 333 22345555577788899999999999888765 466555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH----------HHHHHHccCChHHHHHHHHHHHH
Q 047659 491 HTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSA----------IIHGLFKGKNISVGLHMFKLMER 551 (619)
Q Consensus 491 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----------l~~~~~~~g~~~~A~~~~~~~~~ 551 (619)
-..-..-..+..+.++|.++.....+.|. +...... =..+|.+.|++..|++=|..+.+
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 44555666778889999999988888764 2221111 12467777777777766555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-13 Score=135.45 Aligned_cols=150 Identities=13% Similarity=-0.016 Sum_probs=76.5
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-c--hHHHHHHHHhcCCHHHHHHHH
Q 047659 125 IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-V--YEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 125 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~A~~~~ 201 (619)
.+++++|...++++++.+|. ++.++..+..++...|++++|...|+++++.+|+ . +..+..++...|++++|...+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred chHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455555555555555433 4555555555555555555555555555555552 1 555555555555555555555
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 202 RQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
+.+++.. +.+...+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...++.+..
T Consensus 396 ~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 396 NECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 5555553 1122222223333444555566666655554432221333344455555556666666666555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-10 Score=106.34 Aligned_cols=482 Identities=11% Similarity=0.052 Sum_probs=265.1
Q ss_pred cccCChhhHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 27 ISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
-..++.+...++++....+.++..|+-+.+.+.. ..+|....-++.++.-.|+++.|..++..---... +
T Consensus 11 ~d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~-d-------- 81 (611)
T KOG1173|consen 11 ADELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKR-D-------- 81 (611)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhh-h--------
Confidence 3456778888999999999999999999998887 78888888999999999999999998877632211 1
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC-------------CCCCH-----------HhHHHHHHHHHhcC
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG-------------IYLSP-----------DLVQRLMSCLVDSN 161 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~-----------~~~~~l~~~~~~~~ 161 (619)
-......+..+.+..++++|..++.+..... ..+|. ..+..-..+|....
T Consensus 82 ------~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~ 155 (611)
T KOG1173|consen 82 ------IACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALD 155 (611)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhc
Confidence 1155667778888899999999888331100 00000 01111223344445
Q ss_pred ChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCCcchHHH
Q 047659 162 SVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGF----VPNIVTCNKILKRLCINGQIGNASS 234 (619)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~ 234 (619)
+.++|...|.+....++.. +..++....-. +.+.++.+..... .-+......+.....-...-+....
T Consensus 156 n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt-----~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~ 230 (611)
T KOG1173|consen 156 NREEARDKYKEALLADAKCFEAFEKLVSAHMLT-----AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLT 230 (611)
T ss_pred cHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcc-----hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccc
Confidence 5566666666665555422 22232222211 1111111111100 0111111111111100000000000
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047659 235 LFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGL 314 (619)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 314 (619)
.-+...-.+...+.........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+.-
T Consensus 231 r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y- 308 (611)
T KOG1173|consen 231 RNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY- 308 (611)
T ss_pred cCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-
Confidence 00001111223344455555666677788888888888887753 3455556666667778888777766666777653
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047659 315 KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSL 394 (619)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 394 (619)
+..+.+|-++.-.|...|...+|++.|.+...-+. .=...|-.+.+.|+-.|..++|...+..+.+.- +....-+--+
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYl 386 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYL 386 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHH
Confidence 33677788888888888888888888888765421 123467777888888888888888887776541 1111112223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 047659 395 IDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVK 474 (619)
Q Consensus 395 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 474 (619)
.--|.+.+...-|.++|.+.... .|+ |+...+-+.-..-..+.+.+|..
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai--~P~-----------------------------Dplv~~Elgvvay~~~~y~~A~~ 435 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAI--APS-----------------------------DPLVLHELGVVAYTYEEYPEALK 435 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc--CCC-----------------------------cchhhhhhhheeehHhhhHHHHH
Confidence 44577778888888888776653 343 33333333333333444445555
Q ss_pred HHHHHhhC----C--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 047659 475 LFMLMGMY----N--IKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKL 548 (619)
Q Consensus 475 ~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 548 (619)
.|+..... + ......+++.|..+|.+.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|+..|.+
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 44433210 0 00122334445555555555555555555554432 33444555555555555555555555554
Q ss_pred HHHCCCCcCHHHHHHHHH
Q 047659 549 MERNGVAPDIAIYNVLLN 566 (619)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~ 566 (619)
... +.|+..+-..++.
T Consensus 515 aL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 515 ALA--LKPDNIFISELLK 530 (611)
T ss_pred HHh--cCCccHHHHHHHH
Confidence 443 3444443333333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-10 Score=105.59 Aligned_cols=284 Identities=11% Similarity=0.070 Sum_probs=142.0
Q ss_pred cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 226 NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNEL 305 (619)
Q Consensus 226 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 305 (619)
.|++.+|+++..+..+.+.. ....|..-..+--+.|+.+.+-.++.+..+..-.++...+-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665554433 23334444555556666666666666665543334445555555556666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 306 LLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNV-------ISYSILIKGLCQQGRLVEACGLFGQ 378 (619)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~ 378 (619)
+.++.+.+.. .+........+|.+.|++.....++.++.+.|.-.+. .+|+.++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666655443 4555556666666666666666666666665543332 2345555555444555554445554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhc-cHHHHHHHHHHHHhCCCCCCHhhHH
Q 047659 379 VLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLING-LMGDALRFFFQSVRMTLIPNLFIFN 457 (619)
Q Consensus 379 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (619)
...+ ..-++..-.+++.-+.+.|+.++|.++..+..+.+..|....+-.-+.. +.+.-++..+...+.. +.++..+.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~ 332 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLS 332 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHH
Confidence 4433 2224444555666666667777777666666665444431111111100 1111111111111110 01223444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 458 TLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQML 515 (619)
Q Consensus 458 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 515 (619)
+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+.+++..
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4555555555555555555544433 3455555555555555555555555554444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-09 Score=96.73 Aligned_cols=124 Identities=13% Similarity=0.148 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 433 LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFF 512 (619)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 512 (619)
.+++.+..+..+..--...|...+ .+..+++..|++.+|+++|-.+....++.+..-...+.++|.+.+.++.|++++-
T Consensus 374 qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 455555555554443333233333 4678889999999999999888765544444444556688899999999877765
Q ss_pred HHHHCCCCCCHHh-HHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHH
Q 047659 513 QMLKRGLTPDVIT-YSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYN 562 (619)
Q Consensus 513 ~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 562 (619)
++-. +.+..+ ...+..-|.+.+.+--|.+.|+.+... .|++.-|.
T Consensus 453 k~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 453 KTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred hcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 5432 223333 345556788899988899999988874 56655553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-09 Score=103.28 Aligned_cols=463 Identities=14% Similarity=0.107 Sum_probs=303.5
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHH
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLM 154 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 154 (619)
...+++....++.+.+++.+|...+ +....+-.+...|+-++|....+..+..++. +...|..++
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHge--------------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~g 82 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGE--------------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLG 82 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccch--------------hHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHH
Confidence 3568899999999999999888777 5566666677889999999999999887665 888999999
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch
Q 047659 155 SCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 231 (619)
-.+....++++|+..|..++..++|. +.-+.-.-++.|+++.....-....+.. +.....|..+..++.-.|+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999843 8888888888999999888888888763 5556678888888888999999
Q ss_pred HHHHHHHHHhCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047659 232 ASSLFDVLLLVG-PKPNVVTFSTLI------NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNE 304 (619)
Q Consensus 232 A~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 304 (619)
|..+++...+.. -.|+...+.... ....+.|..+.|++.+..-... +.-....-..-...+.+.++.++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 999999888654 235555443332 2345678888888877665543 22122233445566788899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-cCCCHHHHH-HHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHH
Q 047659 305 LLLTALDRGLKLDVVVFSSVMDAYV-GIGDVGRAV-QTYDRMLNGGFLPNVISYSIL-IKGLCQQGRLVEACGLFGQVLI 381 (619)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~ 381 (619)
++..+... .||...|...+..+. +..+..++. .+|....+. .|....-..+ +.......-.+..-+++....+
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 99999987 456665555444443 333333343 666665553 1111111111 1111122334445566677777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhh--H
Q 047659 382 RRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMI---KRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFI--F 456 (619)
Q Consensus 382 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~--~ 456 (619)
.|+++- +..+...|-.....+ +++++. ..++.++...+ .. + ....-+|.... +
T Consensus 317 Kg~p~v---f~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~-~~-----D---------~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 317 KGVPSV---FKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFN-FL-----D---------DGKQEPPTTLLWTL 374 (700)
T ss_pred cCCCch---hhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCC-cc-----c---------ccccCCchHHHHHH
Confidence 776643 333333332222111 222221 11111110000 00 0 00011344433 4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 047659 457 NTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVI-THTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFK 535 (619)
Q Consensus 457 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 535 (619)
-.++..+-+.|+++.|...++....+ .|+.. .|..-.+.+...|++++|..++++..+-. .||...-.--..-..+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 45777888999999999999998876 45543 45555678889999999999999998754 4555544455666678
Q ss_pred cCChHHHHHHHHHHHHCCCC--cCH----HHHHHH--HHHHHHcCCHHHHHHHHHH
Q 047659 536 GKNISVGLHMFKLMERNGVA--PDI----AIYNVL--LNMLIKECNLDAALKLFGQ 583 (619)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~--~~~----~~~~~l--~~~~~~~g~~~~A~~~~~~ 583 (619)
+++.++|.++.....+.|.. -+. -.|-.+ ..+|.+.|++-.|++=|..
T Consensus 452 An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 89999999999999887641 111 122222 3567777777776654443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-12 Score=128.40 Aligned_cols=257 Identities=14% Similarity=0.055 Sum_probs=185.1
Q ss_pred CChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 78 DMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 78 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
+.+++|...|+++++.+|+... .|..++.+|...+.. +. +
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~--------------a~~~La~~~~~~~~~-------------g~-------------~ 314 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIA--------------PYCALAECYLSMAQM-------------GI-------------F 314 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHH--------------HHHHHHHHHHHHHHc-------------CC-------------c
Confidence 4578999999999999988765 565665555443221 00 0
Q ss_pred HhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHH
Q 047659 158 VDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASS 234 (619)
Q Consensus 158 ~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 234 (619)
...+++++|...++++++.+| +. +..+...+...|++++|...++++++.+ +.+...+..+...+...|++++|..
T Consensus 315 ~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 315 DKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 134568999999999999999 43 7778888889999999999999999986 6667788889999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047659 235 LFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGL 314 (619)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 314 (619)
.+++..+.++. +...+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+.++.....
T Consensus 394 ~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 394 TINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 99999986554 23333444555667899999999999987653222455677778888899999999999998766522
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 315 KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG-FLPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
.+....+.+...|...| +.+...++.+.+.. ..+....+ +-..+.-.|+.+.+... +++.+.
T Consensus 473 -~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 -TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 24445566666777777 47777777766531 12222222 33344556666666655 777665
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-09 Score=106.98 Aligned_cols=291 Identities=15% Similarity=0.169 Sum_probs=193.0
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
...-+...|++++|+++++.... .+........+..+.+.|+.++|...|+.++..+|++.. .|
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~--------------Yy 75 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD--------------YY 75 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------------HH
Confidence 33445678999999999988766 555566678999999999999999999999999999887 44
Q ss_pred HHHHHHHHHc-----CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh-HHHHHHHHHhhCCc-cchHHHHHHH
Q 047659 116 SFLIENYVRI-----GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG-QYYKLCRAMRGKGF-CVYEFLMNGL 188 (619)
Q Consensus 116 ~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~-~~~~~l~~~~ 188 (619)
..+..+..-. .+.+...++|+.+...-|. ..+...+.-.+.....+. .+...+......|. ..+..+-..|
T Consensus 76 ~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly 153 (517)
T PF12569_consen 76 RGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLY 153 (517)
T ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 5555554322 2567778888888765433 333323322222222332 45556666777776 4477777776
Q ss_pred HhcCCHHHHHHHHHHHHHC----C----------CCCChhhH--HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHH
Q 047659 189 LRKGVIENAFHMHRQVIQR----G----------FVPNIVTC--NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFS 252 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~~~----~----------~~~~~~~~--~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 252 (619)
.......-..+++...... + -+|+...| ..+...|...|++++|.+.+++.+.+.|. .+..|.
T Consensus 154 ~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~ 232 (517)
T PF12569_consen 154 KDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYM 232 (517)
T ss_pred cChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHH
Confidence 6555555555555554432 1 12333333 44566677788888888888888775322 366677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------HHH
Q 047659 253 TLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVF--------SSV 324 (619)
Q Consensus 253 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l 324 (619)
.-.+.+-..|++.+|.+.++.....+.. |...-+..+..+.++|+.++|.+++....+.+..|....+ ...
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 7778888888888888888888877655 6677777777778888888888888877766543322211 334
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh
Q 047659 325 MDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~ 346 (619)
..+|.+.|++..|++.|..+.+
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5667777777777766665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.6e-11 Score=110.22 Aligned_cols=277 Identities=13% Similarity=0.036 Sum_probs=180.0
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+..-...+..++++.+..++++.+.. |..++.+..-+..+...|+..+=..+=.++++.+|..+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a---------- 312 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA---------- 312 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC----------
Confidence 444555555566666666666666666665 55556555555566666666655555555555544433
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLM 185 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~ 185 (619)
.+|.+++--|.--|+.++|++.|.+....++. =...|...+..|+-.+..+.|...|..+.+.-+ -++..+.
T Consensus 313 ----~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 313 ----LSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred ----cchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 37778877777778888888888777665433 345677788888888888888888777766555 2355666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC----CCC--CChhhHHHHHHHHH
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV----GPK--PNVVTFSTLINAFC 259 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~ 259 (619)
--|.+.++.+.|.++|.++.... +.|+...+-+.-+....+.+.+|..+|...+.. +.+ .-..+++.|.++|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 66777778888888887777764 666667777666666677777777777766521 000 02234666667777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047659 260 KEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMD 326 (619)
Q Consensus 260 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 326 (619)
+.+.+++|+..|+.......+ +..++.++.-.|...|+++.|.+.|.+.+.. .|+..+...++.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLK 530 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 777777777777776665333 6666777766777777777777777666643 455544444444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-11 Score=111.24 Aligned_cols=193 Identities=13% Similarity=0.077 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...+++++..+|.... .+..++..+...|++++|.+.+++..+..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL--------------AYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44455556666666666666666666655554433 4555566666666666666666666554333
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKI 219 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 219 (619)
+...+..+...+...|++++|.+.++++..... ..+..+..++...|++++|.+.+.+..+.. +.+...+..+
T Consensus 98 -~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 175 (234)
T TIGR02521 98 -NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLEL 175 (234)
T ss_pred -CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHH
Confidence 445555555556666666666666655544321 113334444444555555555555444442 2233344444
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 220 LKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLM 274 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 274 (619)
...+...|++++|...+++.... .+.+...+..+...+...|+.+.|..+.+.+
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444455555555555544443 1223333334444444444555544444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=111.44 Aligned_cols=196 Identities=9% Similarity=-0.045 Sum_probs=169.8
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
.+.....+...+...|++++|++.++.+.. |.+...+..++.++...|++++|...+++++...|....
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------- 100 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD--------- 100 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------
Confidence 455677788888999999999999999887 777888899999999999999999999999998777655
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFL 184 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l 184 (619)
.+..++..+...|++++|.+.++++......+ ....+..+..++...|++++|...+.+..+..| +. +..+
T Consensus 101 -----~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 101 -----VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175 (234)
T ss_pred -----HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence 78889999999999999999999998753222 456778889999999999999999999999888 33 8888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
...+...|++++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 899999999999999999998873 55667777888888899999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.8e-11 Score=98.64 Aligned_cols=187 Identities=12% Similarity=0.021 Sum_probs=92.3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
..++..|+++|++..|+..++++++.+|+... +|..++..|.+.|..+.|.+.|+..++..+. +.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~--------------a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~G 103 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYL--------------AHLVRAHYYQKLGENDLADESYRKALSLAPN-NG 103 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH--------------HHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-cc
Confidence 34445555555555555555555555555444 5555555555555555555555555554433 44
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR 222 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 222 (619)
...|.-...+|.+|++++|...|++...... ++|..+.-+..+.|+.+.|...|++.++.. +....+...+...
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~ 182 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARL 182 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHH
Confidence 4555555555555555555555555443321 224444444445555555555555554443 2233333444444
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047659 223 LCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLY 271 (619)
Q Consensus 223 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 271 (619)
..+.|++-.|...++.....+. ++..+.-..|+.-...|+.+.+.+.=
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4444555555555444444433 34444444444444444444444333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.7e-10 Score=108.84 Aligned_cols=514 Identities=16% Similarity=0.086 Sum_probs=260.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc---CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN---CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
+.-.+.+++..|...|+.+.|- .|..+.. |-....+..+.....+.|+.+.+. .
T Consensus 24 nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------e------------ 80 (1088)
T KOG4318|consen 24 NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------E------------ 80 (1088)
T ss_pred chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------C------------
Confidence 4456888888899899988887 6766654 556666667777777777776665 1
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHH-HH-------hCCCCCCHHhHHH---------------HHHHHHhcCChh
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAY-MS-------DMGIYLSPDLVQR---------------LMSCLVDSNSVG 164 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-------~~~~~~~~~~~~~---------------l~~~~~~~~~~~ 164 (619)
|..+ +|..|..+|.+.||+.. .+..++ +. ..|.. .++-|.. .+..+.-.|.++
T Consensus 81 -p~aD-tyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 81 -PLAD-TYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -Cchh-HHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 1112 89999999999999865 222222 21 11111 1121211 222233344445
Q ss_pred HHHHHHHHHhhCCcc-chHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 165 QYYKLCRAMRGKGFC-VYEFLMNGLLR-KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 165 ~A~~~~~~~~~~~~~-~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
.+++++..+.....+ ++...++-+.. ...+++-..+.....+ .|+..++..++..-...|+.+.|..++.+|.+.
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 555555444333221 11111332222 2223333333333222 588888888888888889999999999999888
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047659 243 GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFS 322 (619)
Q Consensus 243 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 322 (619)
|.+.+...|..++-+ .++...+..+++.|.+.|+.|+..|+...+-.+..+|....+ +.|.. ....++
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~sq-~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGSQ-LAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccccc-hhhhhh
Confidence 888888877777765 777888888888888888889888888877777775542221 12222 222333
Q ss_pred HHHHHHHcCCC-----H-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC-CHH
Q 047659 323 SVMDAYVGIGD-----V-----GRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRR--LEP-SLL 389 (619)
Q Consensus 323 ~ll~~~~~~~~-----~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~ 389 (619)
+-+..-.-.|. . .-....+.+..-.|+......|...... ...|.-++..++...+..-- ..+ +..
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 32222222331 1 1111122222222444444445444332 23677777777776665321 122 233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH--HHHHcCCC--CCHhhHHHHHhccHHHHHHHHHHHH----hCCCCC-------CHh
Q 047659 390 TYSSLIDGFCKSGKLRDGFSLYD--NMIKRGLK--PDAVVCSLLINGLMGDALRFFFQSV----RMTLIP-------NLF 454 (619)
Q Consensus 390 ~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~~~--~~~~~~~~ll~~~~~~a~~~~~~~~----~~~~~~-------~~~ 454 (619)
.|..++.-|.+.-+..-...++. +..+.... ........+.......+++-+.... .....| -..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 45555555544333222222222 22222100 0000000000000011111111000 000000 111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHH
Q 047659 455 IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKR--GLTPDVITYSAIIHG 532 (619)
Q Consensus 455 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~ 532 (619)
.-+.++..++..-+..+++..-+.....-+ + ..|..||.-+......+.|..+.++.... .+..|..-+..+.+.
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 224444455544444444433333322211 1 44666666666666666666666666542 233445556666666
Q ss_pred HHccCChHHHHHHHHHHHHCC-CCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047659 533 LFKGKNISVGLHMFKLMERNG-VAPD-IAIYNVLLNMLIKECNLDAALKLFGQLTDRGLE 590 (619)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 590 (619)
..+.+....+.++++++.+.- ..|+ ..++-.++......|+.+.-.++.+-+...|+.
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 666666666666666666521 1121 223444445555556665555555555554443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=108.19 Aligned_cols=227 Identities=15% Similarity=0.083 Sum_probs=141.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
..+++.|.+.|.+.+|.+.++..++..|-. + +|..|...|.+-..+..|+.++...++.-|. ++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-d--------------TfllLskvY~ridQP~~AL~~~~~gld~fP~-~V 290 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-D--------------TFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DV 290 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-h--------------HHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hh
Confidence 356667777777777777777766654321 1 6666677777777777777777766665322 44
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLC 224 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 224 (619)
.....+.+++-..++.++|.++|+...+..+ ++ ...+...|...++++-|+..++++++.| ..+...|+.+.-.|.
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHH
Confidence 4455666677667777777777777666665 33 5555566666677777777777777776 445555666666666
Q ss_pred hcCCcchHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047659 225 INGQIGNASSLFDVLLLVGPKPN--VVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEG 302 (619)
Q Consensus 225 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 302 (619)
-.++++-++..|++....-..|+ ...|-.+.......||+..|.+.|+.....+.. ....++.|.-.-.+.|++++|
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHH
Confidence 66677777766666654332232 345556666666666666666666666655333 445566666666666666666
Q ss_pred HHHHHHHHHc
Q 047659 303 NELLLTALDR 312 (619)
Q Consensus 303 ~~~~~~~~~~ 312 (619)
..++......
T Consensus 449 rsll~~A~s~ 458 (478)
T KOG1129|consen 449 RSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhhh
Confidence 6666665544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-08 Score=96.86 Aligned_cols=450 Identities=12% Similarity=0.035 Sum_probs=241.1
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+.+-+....++|++++|.+....++. |.+..++..-.-.+.+.+.|++|..+.+.-......+.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~------------ 80 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS------------ 80 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch------------
Confidence 4666777778889999999999999998 88888998888899999999999966655543211110
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHH-H
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGL-L 189 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~-~ 189 (619)
.+..-+.+..+.++.++|+..++... +.+..+...-...+-+.|++++|+.+|+.+.+.+.+.+...+++- .
T Consensus 81 ---~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 81 ---FFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred ---hhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 22344556678899999999998331 224557777888889999999999999999888874422222211 1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC-------CCC------Ch-hhHHHHH
Q 047659 190 RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG-------PKP------NV-VTFSTLI 255 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-------~~~------~~-~~~~~l~ 255 (619)
..+--..+ ++.+...... ..+-..+......+...|++.+|+++++...+.+ -.. .. ..-..+.
T Consensus 154 a~~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 154 AVAAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 11111111 1222222111 1122223334456677899999999999883211 110 11 1122344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHH-HHHHHHHHHHHc-----------CCCCCHH
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIY----SILIDGLFKAGRLK-EGNELLLTALDR-----------GLKLDVV 319 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~~~ 319 (619)
-.+-..|+.++|..+|....+.+.. |.... |.|+..-....-.+ .++..++..... .-.-...
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999887543 44322 22222211111111 111122111110 0000111
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047659 320 VFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLC--QQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDG 397 (619)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 397 (619)
.-+.++..|. +..+.+.++...... ..|.. .+..++..+. +...+..+.+++...-+....-...+.-..++.
T Consensus 311 ~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 311 RNNALLALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 1122333332 333444444333322 23333 3333433332 223467777777777665433334455566777
Q ss_pred HHhcCChHHHHHHHH--------HHHHcCCCCCHhhHHHHHhc----------cHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047659 398 FCKSGKLRDGFSLYD--------NMIKRGLKPDAVVCSLLING----------LMGDALRFFFQSVRMTLIPNLFIFNTL 459 (619)
Q Consensus 398 ~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~ll~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (619)
....|+++.|.+++. .+.+.+..|..+.+...+.. .+++|...+....... ..-..++.-+
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~a 464 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREA 464 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHH
Confidence 788999999999888 44444444544433222211 2233333332222111 0011122222
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 460 MDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFF 512 (619)
Q Consensus 460 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 512 (619)
...-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-.
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 222334455566666666555533 45555555555555543 3444444433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-08 Score=100.37 Aligned_cols=258 Identities=18% Similarity=0.126 Sum_probs=126.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
.+.++...|++++|+..++.......+... .....+..+.+.|+.++|..++..+++.+|. |..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~--------------~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Y 74 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLA--------------VLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDY 74 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHH
Confidence 344556666666666666665555444333 4555566666667777777777666665543 4444
Q ss_pred HHHHHHHHHhc-----CChhHHHHHHHHHhhCCc--cchHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 150 VQRLMSCLVDS-----NSVGQYYKLCRAMRGKGF--CVYEFLMNGLLRKGVI-ENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 150 ~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
+..+..++.-. .+.+...++|+.+....| +....+.-.+..-..+ ..+...+..++..|+|+ +|+.+-.
T Consensus 75 y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~ 151 (517)
T PF12569_consen 75 YRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKP 151 (517)
T ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHH
Confidence 44444444211 234555666666665555 2122222122211122 23344455555555322 2333444
Q ss_pred HHHhcCCcchHHHHHHHHHhC----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH
Q 047659 222 RLCINGQIGNASSLFDVLLLV----G----------PKPNV--VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD-LI 284 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~ 284 (619)
.|......+-..+++...... + -.|+. .++..+...|-..|++++|++.++..++.. |+ +.
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~e 229 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVE 229 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHH
Confidence 444333333333333333211 0 01222 123334445555566666666666555542 22 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 285 IYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 285 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
.|..-.+.+-+.|++.+|.+.++.....+.. |...-+-....+.++|++++|.+++....+.+
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 5555555555566666666666555555433 55555555555555666666665555555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-11 Score=119.70 Aligned_cols=269 Identities=13% Similarity=0.128 Sum_probs=144.6
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047659 236 FDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315 (619)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 315 (619)
+-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 344445555666666666666666666665555 5555555555555555666655555555554443 3
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 047659 316 LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLI-RRLEPSLLTYSSL 394 (619)
Q Consensus 316 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 394 (619)
|...+|+.|..+|...||+.. |+...+ -...+...+...|.-.....++..+.- .+.-||..+ .
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 455556666666666665543 222111 111223333444443333333333211 112233322 2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHhc---cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 047659 395 IDGFCKSGKLRDGFSLYDNMIKRGL-KPDAVVCSLLING---LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRAT 470 (619)
Q Consensus 395 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 470 (619)
+.-....|.++.+++++..+..... .|..+ ++.. ......++........-.|++.+|..++.+-...|+.+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 3333445566666666655433211 12111 1211 11222222222222111467777888887777788888
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC
Q 047659 471 DTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKN 538 (619)
Q Consensus 471 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 538 (619)
.|..++.+|.+.|++.+..-|..++-+ .++...+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888877777766666654 67777777777778777888888887777777776544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-11 Score=105.83 Aligned_cols=225 Identities=11% Similarity=0.019 Sum_probs=115.4
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCC
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGV 193 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~ 193 (619)
.++.+|.+.|.+.+|...|+..++. .|-+.++..+.++|.+-.++..|+.++.+-++..| |+ ...+.+.+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3455566666666666666655553 33445555556666666666666666666555555 43 4445555555555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNL 273 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 273 (619)
.++|.++++...+.. +.+++....+...|.-.++++-|...+.+++..|.. ++..|+.+.-+|.-.++++-++.-|..
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555555553 444444444445555555555555555555555544 444555555555555555555555555
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 274 MMEMDLVPD--LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 274 m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
....--.|+ ..+|-.+-......||+..|.+.|+.....+.. ....+|.|.-.-.+.|++++|..+++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 444322222 223333444444445555555555544444322 334444444444455555555555544443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-10 Score=108.21 Aligned_cols=217 Identities=13% Similarity=0.002 Sum_probs=161.0
Q ss_pred HHccCCchhHHHHHHHhhc--CCC----CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVS----SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
...++..+.++.-+..++. +.+ +..|..++.++...|++++|...|+++++.+|+.+. +|
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~--------------a~ 101 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD--------------AY 101 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH--------------HH
Confidence 3345566777777777775 222 455888999999999999999999999999888776 89
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHH-HHHHHhcCC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFL-MNGLLRKGV 193 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l-~~~~~~~~~ 193 (619)
..++..+...|++++|...|++.++..|. +..++..++.++...|++++|++.|++..+.+| +.+..+ .......++
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~ 180 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLD 180 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 99999999999999999999999987655 677888899999999999999999999999998 443332 233446778
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC---CC--C-CChhhHHHHHHHHHhcCCHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV---GP--K-PNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~~a 267 (619)
+++|.+.+....... .++...+ .......|+...+ +.++.+... .+ . .....|..+...+.+.|++++|
T Consensus 181 ~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 181 PKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999999997766443 3332222 2223345666554 345444421 11 1 1235688888888999999999
Q ss_pred HHHHHHHHhCC
Q 047659 268 FQLYNLMMEMD 278 (619)
Q Consensus 268 ~~~~~~m~~~~ 278 (619)
...|+...+.+
T Consensus 256 ~~~~~~Al~~~ 266 (296)
T PRK11189 256 AALFKLALANN 266 (296)
T ss_pred HHHHHHHHHhC
Confidence 99999888764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-08 Score=98.79 Aligned_cols=130 Identities=14% Similarity=-0.014 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 047659 390 TYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRA 469 (619)
Q Consensus 390 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 469 (619)
.|......+.+.+..+++...+.+.... .|- ....|......+...|+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l-----------------------------~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPL-----------------------------SASVYYLRGLLLEVKGQL 700 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chh-----------------------------hHHHHHHhhHHHHHHHhh
Confidence 3556667788888888888888777654 221 344555666667778888
Q ss_pred hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 047659 470 TDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAIL--LFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFK 547 (619)
Q Consensus 470 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 547 (619)
++|.+.|......+ +-++.+..++...+...|+..-|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+-|+
T Consensus 701 ~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 88888888776653 3345577788888888887777776 888888765 4577888888888888888888888888
Q ss_pred HHHHC
Q 047659 548 LMERN 552 (619)
Q Consensus 548 ~~~~~ 552 (619)
.....
T Consensus 779 aa~qL 783 (799)
T KOG4162|consen 779 AALQL 783 (799)
T ss_pred HHHhh
Confidence 77663
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.8e-10 Score=92.11 Aligned_cols=196 Identities=10% Similarity=-0.064 Sum_probs=167.2
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~ 190 (619)
++..|+-.|.+.|++..|..-++++++.+|. +..+|..+...|.+.|+.+.|.+.|++..+..| |+.+.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 6778888999999999999999999998766 788999999999999999999999999999988 669999999999
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRG-FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQ 269 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 269 (619)
.|++++|.+.|+.++... +.-...+|..+.-+..+.|+++.|...|++.++..+. ...+.-.+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 999999999999998863 2334557778888888999999999999999886543 45667788888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047659 270 LYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR 312 (619)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 312 (619)
.++.....+. ++..+.-..|+.....|+.+.+-+.=..+.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9998888765 78888888888888899988877766666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-07 Score=90.32 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=87.5
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHhHHHHHHHHHccCCh
Q 047659 468 RATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFF--------QMLKRGLTPDVITYSAIIHGLFKGKNI 539 (619)
Q Consensus 468 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 539 (619)
.+.++.+++...-+..........-.++......|+++.|.+++. .+.+.+.. +.+...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCC
Confidence 355666666655544222223444555566677888888888887 44443333 34456666777777777
Q ss_pred HHHHHHHHHHHHC--CCCcCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCccccc
Q 047659 540 SVGLHMFKLMERN--GVAPDIA----IYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCLID 612 (619)
Q Consensus 540 ~~A~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 612 (619)
+.|..++...... .-.+... ++.-++..-.+.|.-++|..+++++.+. .++|..+...++.+|++.++....
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHHH
Confidence 7777776665541 1111222 3334444455678888888888888874 356788888888888887765443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-12 Score=82.82 Aligned_cols=50 Identities=42% Similarity=0.818 Sum_probs=45.6
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 047659 556 PDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCS 605 (619)
Q Consensus 556 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 605 (619)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999999886
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-07 Score=85.81 Aligned_cols=379 Identities=12% Similarity=0.024 Sum_probs=268.1
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH-------
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR------- 102 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------- 102 (619)
+-+.-...+.-+-..++-..|+......+. ...+.....++..+-..++..++.-.+...+..-|-......
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 334555666667778888999998888876 555555566666666666666777777777666553333221
Q ss_pred ------HHHh---hcCCCcccHHHHHHHHH--HcCChhhHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047659 103 ------LFRD---SLGDFGCDYSFLIENYV--RIGKIDESVEIFAYMSDMG-IYLSPDLVQRLMSCLVDSNSVGQYYKLC 170 (619)
Q Consensus 103 ------~~~~---~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 170 (619)
++.. ..++.......-+.+++ -.++...|...+-.+.... .+-|......+..++...|+.++|+..|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 1111 12332222233333333 3466666666665554433 3446778899999999999999999999
Q ss_pred HHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC
Q 047659 171 RAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN 247 (619)
Q Consensus 171 ~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 247 (619)
+.....+|+. .....-.+.+.|+.+....+...+.... .-+...|..-........++..|+..-++.++.++. +
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-N 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-c
Confidence 9999998832 3333344567888888888877777653 345556666667777788999999999998875332 4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-H
Q 047659 248 VVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVM-D 326 (619)
Q Consensus 248 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~ 326 (619)
...|..-...+...++.++|.=.|+..+... +-+..+|..|+.+|...|.+.+|.-+-....+. .+.+..+.+.+. .
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTL 411 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcce
Confidence 5556555677889999999999999988753 236789999999999999999998877766543 223555555552 3
Q ss_pred HHH-cCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047659 327 AYV-GIGDVGRAVQTYDRMLNGGFLPN-VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKL 404 (619)
Q Consensus 327 ~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 404 (619)
.+. ....-++|.+++++-... .|+ ....+.+...+...|..+.++.+++..... .||....+.+.+.+...+.+
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhH
Confidence 333 233467888999887765 344 445677778888999999999999998876 78888899999999999999
Q ss_pred HHHHHHHHHHHHc
Q 047659 405 RDGFSLYDNMIKR 417 (619)
Q Consensus 405 ~~a~~~~~~~~~~ 417 (619)
.++...|......
T Consensus 488 Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 488 QKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888775
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.4e-08 Score=96.19 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=106.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHH
Q 047659 455 IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPD-VITYSAIIHGL 533 (619)
Q Consensus 455 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 533 (619)
.|......+.+.++.+++...+.+..... +.....|......+...|..++|.+.|.....- .|+ +....++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 45667777888899999987777766543 455666777777888899999999999998864 454 56788999999
Q ss_pred HccCChHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047659 534 FKGKNISVGLH--MFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDR 587 (619)
Q Consensus 534 ~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (619)
...|+..-|.. ++..+.+.+. .+...|..+...+.+.|+.++|.+-|....+.
T Consensus 729 le~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999888888 9999999753 48889999999999999999999999998863
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-08 Score=87.76 Aligned_cols=199 Identities=12% Similarity=0.052 Sum_probs=153.0
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
..-++++++..+.+..++.+|++.+..-.+ |.+.-....++..|....++..|..-|++.-...|....
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q--------- 79 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ--------- 79 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH---------
Confidence 344789999999999999999999998776 557778889999999999999999999999887776443
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNG 187 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~ 187 (619)
...--++.+-+.+.+.+|+.+...|.+. +..-......-..+.-..+++..+..+++.....+. ++.+...-.
T Consensus 80 -----YrlY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 80 -----YRLYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL 153 (459)
T ss_pred -----HHHHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe
Confidence 3344567788889999999999888542 111112222223334467888889999998886655 667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPK 245 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 245 (619)
..+.|+++.|.+-|....+-+--.....|+..+..| +.|+++.|.+...+++++|++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 779999999999999998875455566677666544 678999999999999988754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-07 Score=92.84 Aligned_cols=211 Identities=11% Similarity=0.136 Sum_probs=107.9
Q ss_pred HHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (619)
|...|+.+.|.+..+.+. +...|..++..+.+.++++-|.--+-.|-...+ .|++++.-.+++..-...+..
T Consensus 738 yvtiG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg-----aRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG-----ARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh-----HHHHHHHHhCCcchhhHHHHH
Confidence 466899999988877766 678999999999999999888765555533211 122332222221122223333
Q ss_pred HHHcCChhhHHHHHHHHHhCCC-----------------------CCCHHhHHHHHHHHHhcCChhHHHHHHHHH-----
Q 047659 122 YVRIGKIDESVEIFAYMSDMGI-----------------------YLSPDLVQRLMSCLVDSNSVGQYYKLCRAM----- 173 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----- 173 (619)
....|.+++|..+|++-...+. -.=..+|..-+.-+-..++.+.|++.|++.
T Consensus 810 AieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~haf 889 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAF 889 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHH
Confidence 3444555555555544422100 001123444444444444455555544431
Q ss_pred -----hhCCc-----------cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047659 174 -----RGKGF-----------CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSL 235 (619)
Q Consensus 174 -----~~~~~-----------~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 235 (619)
+..+| |. |......+-..|+.+.|+.++..+.+ |..+++..+-.|+.++|-++
T Consensus 890 ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 890 EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHH
Confidence 22222 11 33333334444444444444443332 23344444445555555544
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 236 FDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
-++- -|......+.+.|-..|++.+|..+|.+..
T Consensus 961 A~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 961 AEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4432 244445566777777777777777776654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-08 Score=92.09 Aligned_cols=433 Identities=12% Similarity=0.050 Sum_probs=240.4
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+..--...+..|+++.|+..|..++. |++-..|..-...++..|++++|.+--.+.++..|.++.
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k------------- 71 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK------------- 71 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh-------------
Confidence 34455567889999999999999987 777788888999999999999999999999998887776
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH---HHHHHHhhCCc-------cc-h
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYY---KLCRAMRGKGF-------CV-Y 181 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~-------~~-~ 181 (619)
.|..++.++.-.|++++|+..|.+-++..+. |...+..+..++.......+.. .++..+ ...| ++ |
T Consensus 72 -gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l-~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 72 -GYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKL-ANLPLTNYSLSDPAY 148 (539)
T ss_pred -HHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHh-hcChhhhhhhccHHH
Confidence 8999999999999999999999999997654 7777788887772111110000 011111 1111 11 2
Q ss_pred HHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCcc----hHHHHHHHHHh-CCCCCCh
Q 047659 182 EFLMNGLLRKG-------VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI-NGQIG----NASSLFDVLLL-VGPKPNV 248 (619)
Q Consensus 182 ~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~----~A~~~~~~~~~-~~~~~~~ 248 (619)
..++...-+.. +.+.-.+....+...+.. .+...-..... ...+. ......++..+ .....-.
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhh
Confidence 22222211100 000111111111100000 00000000000 00000 00000000000 0000011
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 047659 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVM--- 325 (619)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--- 325 (619)
.-...+..+..+..+++.+++-+....+.. -+..-++....++...|.+..+........+.|.. ....|+.+.
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~ 301 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL 301 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH
Confidence 224456666667778888888888777754 35555666666777777777777777666665533 223333332
Q ss_pred ----HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 047659 326 ----DAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL-LTYSSLIDGFCK 400 (619)
Q Consensus 326 ----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~ 400 (619)
.+|.+.++++.+...|.+.......|+. ..+....+++....+...-. .|.. .-...-...+.+
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHh
Confidence 2444556677777777665543222221 11222333333333333222 1211 111222455666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 401 SGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMG 480 (619)
Q Consensus 401 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 480 (619)
.|++..|...|.+++.. .|+ |...|....-+|.+.|.+..|+.-.+...
T Consensus 371 ~gdy~~Av~~YteAIkr--~P~-----------------------------Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKR--DPE-----------------------------DARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred ccCHHHHHHHHHHHHhc--CCc-----------------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777777777665 244 67788888888888888888888777666
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 047659 481 MYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFK 535 (619)
Q Consensus 481 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 535 (619)
+.. ++....|.-=..++....+++.|.+.|++.++. .|+..-+..-+.-|..
T Consensus 420 eL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 420 ELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred hcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 653 333344444444455566788888888888765 3554444333333333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-10 Score=103.36 Aligned_cols=193 Identities=12% Similarity=-0.102 Sum_probs=147.1
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+......+...|+.++|...|+.+.. |.++.+|..++..+...|++++|...|+++++.+|+...
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~------------ 133 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY------------ 133 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------
Confidence 366666677889999999999999988 888999999999999999999999999999999888766
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHHHHh
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR 190 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~ 190 (619)
++..++.++...|++++|++.|+...+..|. ++. .......+...+++++|...|.+.....+ +.+. .......
T Consensus 134 --a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~ 208 (296)
T PRK11189 134 --AYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFY 208 (296)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHH
Confidence 8889999999999999999999999987654 332 11222234457789999999977654433 4333 2333344
Q ss_pred cCCHHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 047659 191 KGVIENAFHMHRQVIQR---GF---VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP 244 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~---~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 244 (619)
.|+...+ +.+..+.+. .+ +.....|..+...+.+.|++++|...|++....++
T Consensus 209 lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 209 LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5665544 344444422 11 12346789999999999999999999999987643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-07 Score=95.81 Aligned_cols=160 Identities=11% Similarity=0.144 Sum_probs=130.8
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYEFLMN 186 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~ 186 (619)
..+|..|+..|....+...|..+|+.+.+.+.. +..++......|++...++.|..+.-...+..+ ..|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 338999999999999999999999999887655 788899999999999999999999776666665 22666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH--HHHHHhcCCH
Q 047659 187 GLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTL--INAFCKEAKL 264 (619)
Q Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~ 264 (619)
.|...++...|..-|+...+.. +.|...|..+..+|..+|++..|.++|++.... .|+. .|... ....+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 7889999999999999999886 788899999999999999999999999988763 3332 23222 2334578999
Q ss_pred HHHHHHHHHHHh
Q 047659 265 EKAFQLYNLMME 276 (619)
Q Consensus 265 ~~a~~~~~~m~~ 276 (619)
.++...+.....
T Consensus 647 keald~l~~ii~ 658 (1238)
T KOG1127|consen 647 KEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 999998887764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-08 Score=96.28 Aligned_cols=202 Identities=10% Similarity=-0.004 Sum_probs=121.6
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|..+.++..++..+...|+.+.|...+.+.....+.+.+.. ......+..+...|++++|...+++..+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------e~~~~~a~~~~~~g~~~~A~~~~~~~l~ 71 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER-----------ERAHVEALSAWIAGDLPKALALLEQLLD 71 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556667777777777888887777777777655443210 0222334456677888888888888877
Q ss_pred CCCCCCHHhHHHHHHHHH----hcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 047659 141 MGIYLSPDLVQRLMSCLV----DSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI 213 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 213 (619)
..|. +...+.. ...+. ..+....+.+.+.......++. ...+...+...|++++|.+.+++..+.. +.+.
T Consensus 72 ~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~ 148 (355)
T cd05804 72 DYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDA 148 (355)
T ss_pred HCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 6443 4444432 22222 2344444555444422333322 3334456667777777777777777764 4455
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 214 VTCNKILKRLCINGQIGNASSLFDVLLLVGPK-PNV--VTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 214 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
..+..+..++...|++++|...+++.....+. ++. ..|..+...+...|++++|..+|+....
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 56666777777777777777777776654321 121 2344566677777777777777777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-06 Score=86.22 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=62.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIH 531 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 531 (619)
.+..|+.+..+-.+.|...+|++-|-+. -|+..|..+++...+.|.+++-..++...++..-.|... +.++-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4456777777777777777777655432 366778888888888888988888888887765556554 56777
Q ss_pred HHHccCChHHHHHH
Q 047659 532 GLFKGKNISVGLHM 545 (619)
Q Consensus 532 ~~~~~g~~~~A~~~ 545 (619)
+|++.+++.+..++
T Consensus 1175 AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHhchHHHHHHH
Confidence 88888877665544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-11 Score=78.42 Aligned_cols=49 Identities=45% Similarity=0.773 Sum_probs=27.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047659 486 PDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF 534 (619)
Q Consensus 486 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 534 (619)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-09 Score=104.15 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=137.2
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|....+...++..|...|+++.|..+++.+++.-.+..-. ..+-.......++..|...+++++|..+|++++.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL------KHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444566779999999999999999999999861111000 0000011445688899999999999999999975
Q ss_pred C-----CCC-CC-HHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------ccc---hHHHHHHHHhcCCHHHHHHHHH
Q 047659 141 M-----GIY-LS-PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG--------FCV---YEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 141 ~-----~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~---~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
. |.. |. ..+++.|..+|.+.|++++|...++++.+.. +++ +..+...+...++++.|..++.
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3 222 22 2467888889999999999998887754310 011 4444444445555555554444
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN----VVTFSTLINAFCKEAKLEKAFQLYNLMMEM- 277 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~- 277 (619)
...+.- ..-+.++ ..+++.+...|...|++++|.++|+.+...
T Consensus 350 ~al~i~--------------------------------~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 350 KALKIY--------------------------------LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHH--------------------------------HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 333320 0001111 234555555555555555555555554332
Q ss_pred ---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047659 278 ---DL--VP-DLIIYSILIDGLFKAGRLKEGNELLLTALD----RGL--KLDVVVFSSVMDAYVGIGDVGRAVQTYDRML 345 (619)
Q Consensus 278 ---~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (619)
+- .+ ....++.+...|.+.+.+.+|.++|.+... .|+ +-...+|..|...|...|+++.|.++.+.+.
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 01 11 123344455555555555555555544321 121 1123455555555666666666655555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.9e-09 Score=99.97 Aligned_cols=229 Identities=19% Similarity=0.190 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhC--------Cccc---hHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCC
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGK--------GFCV---YEFLMNGLLRKGVIENAFHMHRQVIQR-----G--FVPN 212 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~~~~ 212 (619)
..+...|..+|+++.|..++++.++. .+.+ ...+...|...+++++|..+|+.+... | .+.-
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33555555555555555555554433 1111 333445555566666666666555442 1 1222
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhC-----C-CCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC
Q 047659 213 IVTCNKILKRLCINGQIGNASSLFDVLLLV-----G-PKPNV-VTFSTLINAFCKEAKLEKAFQLYNLMMEM---DLVPD 282 (619)
Q Consensus 213 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~ 282 (619)
..+++.|...|.+.|++++|...++...+- | ..|.+ ..++.+...+...+++++|..+++...+. -+.++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 335556666777777777777776665421 1 11222 23455556666777777777776654432 11111
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----C
Q 047659 283 ----LIIYSILIDGLFKAGRLKEGNELLLTALDRG-------LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN----G 347 (619)
Q Consensus 283 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~ 347 (619)
..+++.+...|...|++++|.++++++.... ..-....++.+...|.+.+.+.+|.++|.+... .
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 2355666666666666666666666555321 111123344455555555555555555544322 1
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 348 G--FLPNVISYSILIKGLCQQGRLVEACGLFGQV 379 (619)
Q Consensus 348 ~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (619)
| .+-...+|..|...|...|+++.|.++.+.+
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1112234444444455555555554444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=101.93 Aligned_cols=91 Identities=11% Similarity=0.038 Sum_probs=51.4
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCccc
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCD 114 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (619)
.....++++|+..+|.-+|+.+.. |.+.++|..|+.+...+++=..|+..++++++.+|++.+ +
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle--------------a 355 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE--------------A 355 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH--------------H
Confidence 334445555555555555555544 555556666666665555555666666666665555555 4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
...|+-.|...|.-..|...++..+..
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~~ 382 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIRN 382 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 445555555555555555555555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6e-08 Score=85.96 Aligned_cols=312 Identities=11% Similarity=0.059 Sum_probs=184.8
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+..-...++..++.+|++..|+.-|..+++.+|+++- ++..-+..|+..|+-..|+.=+.++++.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~--------------aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ--------------AIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH--------------HHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 33444566889999999999999999999999988766 6667788899999999999999999984
Q ss_pred CCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHhhCCccc------------------hHHHHHHHHhcCCHHHHHHHHH
Q 047659 142 GIYLSPD-LVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV------------------YEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 142 ~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
+||.. +...-..++.++|.++.|..-|+.++..+|+. ....+..+...|+...|++...
T Consensus 102 --KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 102 --KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred --CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 55643 45667778899999999999999999887711 1122233334455555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD 282 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 282 (619)
.+++.. +-|...+..-..+|...|.+..|+.-+....+.. ..+..++--+-..+...|+.+.++...++..+. .||
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpd 255 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPD 255 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccc
Confidence 555542 3444444444555555555555544444433321 112333333444444555555555555554442 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHH
Q 047659 283 LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVI---SYSIL 359 (619)
Q Consensus 283 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l 359 (619)
....-.. | ....+..+.++. +......++|.++.+-.+...+........ .+..+
T Consensus 256 HK~Cf~~---Y---KklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 256 HKLCFPF---Y---KKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred hhhHHHH---H---HHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence 2111000 0 000111111111 122345566666776666666553221222 23344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 360 IKGLCQQGRLVEACGLFGQVLIRRLEPS-LLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 360 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
-.++...+++.+|++...++++. .|+ ..++.--..+|.-...++.|+.-|+...+.
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44555667777777777776654 333 556666666777777777777777777665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-07 Score=92.04 Aligned_cols=293 Identities=9% Similarity=-0.041 Sum_probs=174.2
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCc---cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSP---NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+...+...|++++|...+..... +.+.. .....+..+...|++++|...+++++..+|.+..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~------------- 78 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL------------- 78 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-------------
Confidence 33444557888888777777665 33332 2344566778999999999999999999887654
Q ss_pred ccHHHHHHHHHH----cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHH
Q 047659 113 CDYSFLIENYVR----IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLM 185 (619)
Q Consensus 113 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~ 185 (619)
++.. ...+.. .|....+.+.++..... .+........+..++...|++++|...+++..+..| +. +..+.
T Consensus 79 -a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la 155 (355)
T cd05804 79 -ALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVA 155 (355)
T ss_pred -HHHH-hHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 3332 223333 34455555555442121 122344555677888999999999999999999998 44 77888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhH-H--HHHHHH
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFV-PNI--VTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN-VVTF-S--TLINAF 258 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~-~--~l~~~~ 258 (619)
.++...|++++|...++........ ++. ..|..+...+...|++++|..++++.....+.+. .... + .++.-+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 8999999999999999999876421 222 2355678889999999999999999864322111 1111 1 222233
Q ss_pred HhcCCHHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------CHHHHHHHHH
Q 047659 259 CKEAKLEKAFQL--YNLMMEMDL--VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL--------DVVVFSSVMD 326 (619)
Q Consensus 259 ~~~~~~~~a~~~--~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~ll~ 326 (619)
...|....+.+. +........ ............++...|+.+.|..+++.+......+ ..........
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 333432222222 111111000 1111122245555667777777777777765432110 0111111222
Q ss_pred HHHcCCCHHHHHHHHHHHHh
Q 047659 327 AYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~ 346 (619)
.+...|+.+.|.+.+.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 316 YAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33456666666666655543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-08 Score=85.07 Aligned_cols=309 Identities=12% Similarity=0.019 Sum_probs=201.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.-..+...++-+|++.+|+..|..+.+ |.+-.++...+.+|+..|+...|..-+.+.++.-|+-..
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~------------ 107 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA------------ 107 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH------------
Confidence 344567778889999999999999986 555555666778999999999999999999997665322
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH--HhH------------HHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP--DLV------------QRLMSCLVDSNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~ 177 (619)
+...-+..+.++|.++.|..=|+.+++..+..+. ..+ ...+..+...|+...|++....+++..
T Consensus 108 --ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 108 --ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred --HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 4455566789999999999999999987654221 122 123334557789999999999999998
Q ss_pred c-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 047659 178 F-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTL 254 (619)
Q Consensus 178 ~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 254 (619)
| |+ +..-..+|...|++..|+.-++.+.+.. ..++..+..+-..+...|+.+.++....+.++. .||-..+-..
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~ 262 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF 262 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence 8 65 8888999999999999999988888775 556667777778888899999999999888874 4443211110
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC
Q 047659 255 INAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLD---VVVFSSVMDAYVGI 331 (619)
Q Consensus 255 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 331 (619)
...+.+..+.++.|.+ ....++|.++.+-.+...+..+... ...+..+-.++...
T Consensus 263 ------YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 263 ------YKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred ------HHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 0111222222222221 2233444444444444444432211 12223334444455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 332 GDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
+++.+|++...++.+.. +.|+.++..-..+|.-...++.|+.-|+...+.
T Consensus 321 ~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55555555555555431 112455555555555555555555555555544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.9e-06 Score=81.61 Aligned_cols=287 Identities=14% Similarity=0.087 Sum_probs=172.0
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH------HHHHHhhcC----CCcccHHHHHHHHHHcCChhhHHHH
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF------FRLFRDSLG----DFGCDYSFLIENYVRIGKIDESVEI 134 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~ 134 (619)
+.-...+-+....|.+++|+.+|++.-+.+--+--+ -.++.-... -...+|...+..+-..++.+.|++.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 333344445556777888888777765432110000 000110000 0122788888888899999999999
Q ss_pred HHHH----------HhCCCC---------CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHH
Q 047659 135 FAYM----------SDMGIY---------LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIE 195 (619)
Q Consensus 135 ~~~~----------~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (619)
|++. +...|+ .++..|..-..-+-..|+.+.|+.+|..+.. |..+++..|-.|+.+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMVRIKCIQGKTD 955 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhheeeEeeccCch
Confidence 9865 222111 2334444444445566777777777776654 788888999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-------------
Q 047659 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA------------- 262 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------- 262 (619)
+|-++.++- | |......+.+.|-..|++.+|...|.+... +...|+.|-.++
T Consensus 956 kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 956 KAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSG 1020 (1416)
T ss_pred HHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 999877643 3 777788899999999999999999987752 334444332222
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHH--cCCCCCHHHHHHHHHHHHc
Q 047659 263 --KLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLT--------ALD--RGLKLDVVVFSSVMDAYVG 330 (619)
Q Consensus 263 --~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~ll~~~~~ 330 (619)
+.-.|-..|++. |.. +...+..|-+.|.+.+|+++--. ++. .....|+...+.-.+.+..
T Consensus 1021 ~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~ 1092 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN 1092 (1416)
T ss_pred chhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 222333333332 111 23344557777777777665321 122 2234467777777777777
Q ss_pred CCCHHHHHHHHHHHHh----------CC----------------CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 331 IGDVGRAVQTYDRMLN----------GG----------------FLPNVI----SYSILIKGLCQQGRLVEACGLFGQV 379 (619)
Q Consensus 331 ~~~~~~a~~~~~~~~~----------~~----------------~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (619)
..++++|..++-...+ .| -.|+.. ....+...|.+.|.+..|.+-|.+.
T Consensus 1093 ~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1093 NQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 7777777766654322 11 123333 3455667788889888887777654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-06 Score=86.73 Aligned_cols=532 Identities=13% Similarity=-0.000 Sum_probs=251.9
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc--------------
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL-------------- 108 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 108 (619)
+++...|+..|-+... +...++|..++.+|..--+...|.+-|+++.+.++...+......+-+
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3345556655555554 555566666666666555666666666666666555444221111000
Q ss_pred --CCCcc------cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc
Q 047659 109 --GDFGC------DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV 180 (619)
Q Consensus 109 --~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (619)
.+... -|-..+-.|...+++.+|+..|+.....+|. |...|..++.+|.+.|++..|+++|.++...+|+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 00000 2222444566778888888888888877665 78888888888888888888888888888888833
Q ss_pred ---hHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCCcchHHHHHHHHH-------hCCC
Q 047659 181 ---YEFLMNGLLRKGVIENAFHMHRQVIQRG------FVPNIVTCNKILKRLCINGQIGNASSLFDVLL-------LVGP 244 (619)
Q Consensus 181 ---~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-------~~~~ 244 (619)
........+..|.+.+|+..+..++..- ...-..++-.....+...|-...|.+.+++.+ .+..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 3334455567888888888887776541 01112222222222333344444444444332 2111
Q ss_pred CCChhhHHHHHHHHHhcCCHH------HHHHHHH-HHHhCCCCC--------------------CHHHHHHHHHHHHh--
Q 047659 245 KPNVVTFSTLINAFCKEAKLE------KAFQLYN-LMMEMDLVP--------------------DLIIYSILIDGLFK-- 295 (619)
Q Consensus 245 ~~~~~~~~~l~~~~~~~~~~~------~a~~~~~-~m~~~~~~~--------------------~~~~~~~ll~~~~~-- 295 (619)
..+...|-.+-.+|.-.-..+ ....++. +....+.-| +..+|..+...|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHH
Confidence 122223333222221100000 0001111 011111111 11222222222222
Q ss_pred --cC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047659 296 --AG----RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRL 369 (619)
Q Consensus 296 --~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 369 (619)
.+ +...|...+.+..+..-. +..+|+.|.-. ...|++.-+.--|-+-... .+.+..+|..+.-.+.+..++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccH
Confidence 11 122444445544443222 44555555433 4445555444444333332 133555666666666677788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHhh-----HHHHHhccHHH----
Q 047659 370 VEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIK----RGLKPDAVV-----CSLLINGLMGD---- 436 (619)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~-----~~~ll~~~~~~---- 436 (619)
+.|...|.......+. +...|-.........|+.-+...+|..--+ .|-.++..- ...+.++..++
T Consensus 867 E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t 945 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT 945 (1238)
T ss_pred HHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence 8888888777654221 333343333333455666666666655221 111222111 11111111111
Q ss_pred HHHH------HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhh-CCCCCCHhhHHH----HHHHHHhcCCHH
Q 047659 437 ALRF------FFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGM-YNIKPDVITHTV----LIRGIASQGSLS 505 (619)
Q Consensus 437 a~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~----l~~~~~~~g~~~ 505 (619)
+.++ +..... +.+.+...|.......-..+....|.+...+... ...+-+...||. +.+.++..|.++
T Consensus 946 ~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 946 ARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred hhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 1111 111111 2223455666666666666666666665554321 001234445553 233444556666
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047659 506 SAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERN-GVAPD-IAIYNVLLNMLIKECNLDAALKLFGQ 583 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (619)
.|..-+..... ..+...-..-+.. .-.|+++++.+.|+++..- +-..+ +.....++......+.-+.|...+=+
T Consensus 1025 ~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1025 SAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred hHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 55433222111 1111111111212 3347788888888887752 11222 23445555555666666777766555
Q ss_pred HHh
Q 047659 584 LTD 586 (619)
Q Consensus 584 ~~~ 586 (619)
...
T Consensus 1101 ~~~ 1103 (1238)
T KOG1127|consen 1101 VKS 1103 (1238)
T ss_pred HHH
Confidence 544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-07 Score=85.58 Aligned_cols=434 Identities=11% Similarity=0.022 Sum_probs=252.5
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIE 195 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 195 (619)
..+....|+++.|+.+|-..+..+|. |-..|..-..+|+..|++++|++--.+.++.+|+. |.....++.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 45567789999999999999998765 88888999999999999999999999999999844 999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchH---HHHHHHHHhCC---CCCChhhHHHHHHHHHhcC-------
Q 047659 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNA---SSLFDVLLLVG---PKPNVVTFSTLINAFCKEA------- 262 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A---~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~------- 262 (619)
+|+..|.+-++.. +.+...++-+..++.......+. -.++..+.... .......|..++..+-+..
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999999885 66667777777776211000000 00111111000 0000112222222221100
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCH----HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCHHH
Q 047659 263 KLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFK-AGRL----KEGNELLLTALD-RGLKLDVVVFSSVMDAYVGIGDVGR 336 (619)
Q Consensus 263 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~----~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (619)
+.....+..-.+...+.. .+...-..... .... ........+..+ .....-..-...+.++..+..++..
T Consensus 167 ~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred ccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 001111111000000000 00000000000 0000 000000000000 0000012234567777788888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCChHHHHH
Q 047659 337 AVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSS-------LIDGFCKSGKLRDGFS 409 (619)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~ 409 (619)
+.+-+....... -+..-++....+|...|.+.++...-.+..+.|.. ....|+. +..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999998888764 45556677778888999888888887777766533 2222332 3346666788899999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh
Q 047659 410 LYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVI 489 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 489 (619)
.|.+.......|+...-.. ..+++.+......-.++.. ..-...-...+.+.|++..|+..|.++++.. +.|..
T Consensus 320 ~~~kaLte~Rt~~~ls~lk----~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLK----EAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred HHHHHhhhhcCHHHHHHHH----HHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 9988776544544322111 2233333333222222111 1111222556677888999999998888775 66778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLI 569 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 569 (619)
.|..-.-+|.+.|.+..|+.-.+...+.. ++....|..=..++....+++.|.+.|++..+.+ |+..-+..-+.-|.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 88888888888888888888877777652 3334455555556666678888888888888753 45444433333343
Q ss_pred H
Q 047659 570 K 570 (619)
Q Consensus 570 ~ 570 (619)
.
T Consensus 471 ~ 471 (539)
T KOG0548|consen 471 E 471 (539)
T ss_pred H
Confidence 3
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-06 Score=82.52 Aligned_cols=222 Identities=15% Similarity=0.114 Sum_probs=135.8
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
....+++..|+.....+.. |+.+.+...-+-.+.+.|+.++|...++..-...+. ++.+...+.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--------------D~~tLq~l~ 84 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--------------DDLTLQFLQ 84 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--------------chHHHHHHH
Confidence 4567788888888888776 666666666777788888888888777666544333 122777778
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh-cCC--
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR-KGV-- 193 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~-~~~-- 193 (619)
..|...|+.++|..+|+++.+. .|+......+..+|.+.+.+.+-.+.=-++.+.-| +. +=++++.... ...
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 8888888888888888888874 44577777888888888777654443333333444 33 1112222221 111
Q ss_pred -------HHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCcchHHHHHH-HHHhCCCCCChhhHHHHHHHHHhcCCH
Q 047659 194 -------IENAFHMHRQVIQRG-FVPNIVTCNKILKRLCINGQIGNASSLFD-VLLLVGPKPNVVTFSTLINAFCKEAKL 264 (619)
Q Consensus 194 -------~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 264 (619)
..-|...++.+++.+ ..-+..-...-...+...|.+++|.+++. ...+.-...+...-+.-+..+...++|
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 233455566665553 11122222223344455677888888773 333332333444455666777778888
Q ss_pred HHHHHHHHHHHhCCC
Q 047659 265 EKAFQLYNLMMEMDL 279 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~ 279 (619)
.+..++-.++...|.
T Consensus 243 ~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 243 QELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888777777653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-08 Score=89.40 Aligned_cols=201 Identities=10% Similarity=0.003 Sum_probs=127.8
Q ss_pred HccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccC-ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 43 IKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSD-MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
...+..++|+.++..++. |.+..+|...+.++...| .+++++..+++++..+|++.. +|....
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq--------------aW~~R~ 113 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ--------------IWHHRR 113 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH--------------HhHHHH
Confidence 336677788888877776 666677777777777776 567788888888877777666 555555
Q ss_pred HHHHHcCCh--hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhc---
Q 047659 120 ENYVRIGKI--DESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRK--- 191 (619)
Q Consensus 120 ~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~--- 191 (619)
..+.+.|+. ++++.+++.+++.+++ |..+|+....++...|+++++++.++++++.++ + +|+.....+...
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 555555553 5677777777776655 777777777777777778888888888777776 2 255544444333
Q ss_pred CC----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047659 192 GV----IENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN----GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK 260 (619)
Q Consensus 192 ~~----~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (619)
|. .+.+++....++... +-|...|+.+...+... ++..+|.+.+.+....++ .+......|+..|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 22 235566665666654 56666777776666552 233456666666554322 244455555555553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-07 Score=87.05 Aligned_cols=220 Identities=12% Similarity=0.077 Sum_probs=165.7
Q ss_pred HccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHH
Q 047659 43 IKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENY 122 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (619)
.-.+++.+|...|+.+. ...+..++|...+++++..+|.+.. +|.....++
T Consensus 31 ~y~~~~~~a~~~~ra~l---------------~~~e~serAL~lt~~aI~lnP~~yt--------------aW~~R~~iL 81 (320)
T PLN02789 31 AYTPEFREAMDYFRAVY---------------ASDERSPRALDLTADVIRLNPGNYT--------------VWHFRRLCL 81 (320)
T ss_pred eeCHHHHHHHHHHHHHH---------------HcCCCCHHHHHHHHHHHHHCchhHH--------------HHHHHHHHH
Confidence 33556666666666554 4678999999999999999998887 677777777
Q ss_pred HHcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--hHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHH
Q 047659 123 VRIG-KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV--GQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIEN 196 (619)
Q Consensus 123 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~ 196 (619)
...| ++++++..++.+++.+++ +..+|+....++.+.|.. ++++++++++++.+| + +|....-++...|++++
T Consensus 82 ~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 82 EALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence 7777 689999999999998776 778898887777777763 678999999999998 3 38888888888999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCc----chHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHH
Q 047659 197 AFHMHRQVIQRGFVPNIVTCNKILKRLCIN---GQI----GNASSLFDVLLLVGPKPNVVTFSTLINAFCKE----AKLE 265 (619)
Q Consensus 197 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 265 (619)
+++.++++++.+ +.|..+|+....++.+. |.. ++..+...+++...+. |...|+.+...+... +...
T Consensus 161 eL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 161 ELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccch
Confidence 999999999987 67778888877666554 233 3556666666665443 677888888877663 3345
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047659 266 KAFQLYNLMMEMDLVPDLIIYSILIDGLFK 295 (619)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 295 (619)
+|.+.+.+....++. +......|++.|+.
T Consensus 239 ~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 239 EVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred hHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 677777776664433 56677777777764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-06 Score=83.29 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=158.9
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGV 193 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (619)
--...++.|.+.|.+..|.+....-.. ...|......+..++.+..-+++|-.+|+++.. +...+.+|-+-.-
T Consensus 617 d~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d-----~dkale~fkkgda 689 (1636)
T KOG3616|consen 617 DGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD-----FDKALECFKKGDA 689 (1636)
T ss_pred ccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC-----HHHHHHHHHcccH
Confidence 456778999999999998876644333 334788888888888888888888888888754 2233344444444
Q ss_pred HHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTC-NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
+.+|.++.+-.... .+... ......+...|+++.|...|-+.. .....+.+......|.+|+.+++
T Consensus 690 f~kaielarfafp~----evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 690 FGKAIELARFAFPE----EVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred HHHHHHHHHhhCcH----HHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHH
Confidence 45555554433211 11111 112233345566777766665442 12234555566777888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 047659 273 LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPN 352 (619)
Q Consensus 273 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (619)
.+..++. -..-|..+...|...|+++.|+++|-+.- .++..+.+|.+.|+|..|.++-.+... ....
T Consensus 757 niqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t 823 (1636)
T KOG3616|consen 757 NIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEAT 823 (1636)
T ss_pred Hhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhH
Confidence 7766532 23346667777788888888887775432 345567778888888888777665543 2344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047659 353 VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNM 414 (619)
Q Consensus 353 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 414 (619)
...|-.-..-+-+.|++.+|.+++-.+. .|+ ..|..|-+.|..++.+++..+-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 5555555566667777777776664332 233 2355667777777766666543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-08 Score=94.03 Aligned_cols=225 Identities=14% Similarity=0.097 Sum_probs=158.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
...+..+.++|++.+|.-.|+.++..+|...+ +|..|+......++-..|+..+++.++.+|. |.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~hae--------------AW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-Nl 353 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAE--------------AWQKLGITQAENENEQNAISALRRCLELDPT-NL 353 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHH--------------HHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cH
Confidence 35667778999999999999999999998888 8888888888889989999999999987665 88
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-chHHHH---------HHHHhcCCHHHHHHHHHHHHHC-CCCCChhhH
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-VYEFLM---------NGLLRKGVIENAFHMHRQVIQR-GFVPNIVTC 216 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~---------~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 216 (619)
.++..|+-.|...|.-..|...+...+...|. .|.... +.+.....+....++|-++... +..+|..+.
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 88888999999999888999988887665541 110000 1112222233334444444333 334677777
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD-LIIYSILIDGLFK 295 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 295 (619)
..|.-.|--.|++++|.+.|+.++...|. |...||.|...++...+.++|+..|++..+. +|+ +++...|.-+|..
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMN 510 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhh
Confidence 77777777778888888888887765332 5677888888777777788888888887774 343 2333334556777
Q ss_pred cCCHHHHHHHHHHHH
Q 047659 296 AGRLKEGNELLLTAL 310 (619)
Q Consensus 296 ~~~~~~a~~~~~~~~ 310 (619)
.|.+++|.+.|-..+
T Consensus 511 lG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 511 LGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhHHHHHHHHHHHH
Confidence 777777777776554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-06 Score=76.04 Aligned_cols=289 Identities=12% Similarity=0.128 Sum_probs=196.6
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~ 190 (619)
-+.+.+..+.+..++.+|++++..-.++.++ +....+.+..+|-...++..|-+.|+.+-...|.. ...-.+.+..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 3677777888999999999999999887655 77888999999999999999999999998888822 3334567778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILK--RLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF 268 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 268 (619)
.+.+..|+.+...+.+. ++...-..-+. ..-..+++..+..+.+.... ..+..+.+.......+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHH
Confidence 99999999999888653 22222222222 23357888899988888742 235566666666777999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CH---------------H
Q 047659 269 QLYNLMMEM-DLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL-------------DV---------------V 319 (619)
Q Consensus 269 ~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~ 319 (619)
+-|+...+- |.. ....|+..+. ..+.|+++.|++...++.++|++. |+ .
T Consensus 165 qkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 999998886 444 5567776664 457789999999999998886531 11 1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047659 320 VFSSVMDAYVGIGDVGRAVQTYDRMLNG-GFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGF 398 (619)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 398 (619)
.+|.-...+.+.|+++.|.+.+-.|.-. ....|+.|...+.-.- ..+++.+...-+.-+...++ -...|+..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 2222233445667777777777666532 2234555555443221 23344444444455554443 2455676777777
Q ss_pred HhcCChHHHHHHHHH
Q 047659 399 CKSGKLRDGFSLYDN 413 (619)
Q Consensus 399 ~~~~~~~~a~~~~~~ 413 (619)
|++.-++-|-.++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 777767666665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-06 Score=83.13 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=44.6
Q ss_pred HhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047659 158 VDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSL 235 (619)
Q Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 235 (619)
....+|.+|+.+++.+...+..+ |..+...|...|+++.|.++|.+.- .++-.|..|.+.|+|++|.++
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 34444444554444444444422 4444444445555555544443221 123344445555555555444
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047659 236 FDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLY 271 (619)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 271 (619)
-++.. |+......|.+-..-+-+.|++.+|.++|
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 44332 12223333433334444444444444444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-08 Score=90.52 Aligned_cols=190 Identities=12% Similarity=0.005 Sum_probs=137.3
Q ss_pred cccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCC---ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHH
Q 047659 27 ISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSS---PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFF 101 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 101 (619)
.+...++........+.+.|++++|+..|+.+.. |.++ .++..++.++.+.|++++|...++++++.+|+++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-
Confidence 5677788888999999999999999999999887 4444 467889999999999999999999999998876542
Q ss_pred HHHHhhcCCCcccHHHHHHHHHHc--------CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 102 RLFRDSLGDFGCDYSFLIENYVRI--------GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
..++..++.++.+. |++++|.+.|+.+....|. +...+..+..... ......
T Consensus 107 ----------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~~----- 166 (235)
T TIGR03302 107 ----------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRLA----- 166 (235)
T ss_pred ----------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHHH-----
Confidence 11455566666654 7899999999999887554 3333322221111 000000
Q ss_pred hhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 174 RGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGF--VPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
.....+...+...|++.+|...++.+++... +.....+..+..++...|++++|...++.+...
T Consensus 167 -----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 -----GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -----HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0122455667788888888888888887631 223467788888888889999888888887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-05 Score=71.26 Aligned_cols=389 Identities=14% Similarity=0.098 Sum_probs=230.5
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHhhCCccchHHHHHHHHhcC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD-SNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKG 192 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (619)
.....+.+|...++-+.|+..+....+.. ....-+.++..+.+ .++..++.--+...+..-|-....+. +..+.+
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~-~ll~l~ 174 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIE-ALLELG 174 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHH-HHHHHh
Confidence 45667888888999999998887764421 12223333333333 33333333333333333321111111 111000
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--CCcchHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHH
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN--GQIGNASSLFDVLLLVG-PKPNVVTFSTLINAFCKEAKLEKAFQ 269 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 269 (619)
+..+...-..|-....+|.......-+.+++.. ++...|...+-.+.... .+.|......+...+...|+..+|..
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 011111111222222333333334444444443 44444444444333222 45567788889999999999999999
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 270 LYNLMMEMDLVPDL-IIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 270 ~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
.|+..... .|+. .......-.+.+.|+.+....+...+.... ..+...|-.-+......+++..|+.+-++..+.+
T Consensus 254 ~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 254 IFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred HHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 99988764 2332 222223333457788888887777776542 1234444444455567788999998888888753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047659 349 FLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSL 428 (619)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 428 (619)
+.+...+-.-...+...|++++|.-.|+..+... +-+..+|..++..|...|.+.+|.-.-+...+. -|...-.-.
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~Lt 406 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLT 406 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhh
Confidence 2345555555667788899999999999887653 236778999999999999999988776665443 122111111
Q ss_pred HHhc--------cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047659 429 LING--------LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIAS 500 (619)
Q Consensus 429 ll~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 500 (619)
++.. ..++|.++++......+. -....+.+...+...|..+.++.+++..... .||....+.|.+.+..
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRA 483 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHH
Confidence 2211 456666666665544221 2234566667777778888888888776654 5777778888888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047659 501 QGSLSSAILLFFQMLKR 517 (619)
Q Consensus 501 ~g~~~~A~~~~~~~~~~ 517 (619)
.+.+++|.+.|...+..
T Consensus 484 ~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 484 QNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 88888888888777754
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=0.0001 Score=75.31 Aligned_cols=302 Identities=10% Similarity=0.085 Sum_probs=136.9
Q ss_pred cCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccH---H---------------------------HHHHHHHc
Q 047659 29 DLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNI---A---------------------------QLIHVLLQ 76 (619)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~---------------------------~l~~~~~~ 76 (619)
.-+|+.+...+.+++..+-+.+-+++++.+.- +...+.. + .++.+...
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 34789999999999999999999999998775 1111111 1 12233334
Q ss_pred cCChhHHHHHHHHHHHh---------cCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 77 SDMRDVASHVFDKMVIQ---------FGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
++-+++|..+|++.--. +-.+.+....+.. .++.+.+|..++.+-.+.|.+.+|++-|-+. .||
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe-~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAE-RCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHH-hhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 45555666555544211 0000000000000 1122224444444444444444444443222 133
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI 225 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 225 (619)
..|..++....+.|.|++-++.+.-+.+... .+-..++-+|++.++..+-.+++. .||......+.+-|..
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhh
Confidence 4444444444444444444444443333322 113344444444444433332221 2333334444444444
Q ss_pred cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 226 NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNEL 305 (619)
Q Consensus 226 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 305 (619)
.|.++.|.-+|... .-|..+...+...|+++.|.+.-++. .+..||..+-.+|...+.+..|
T Consensus 1207 ~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred hhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH---
Confidence 44444444333322 22344444444444444444433322 1344555555555444433222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047659 306 LLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQ 365 (619)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 365 (619)
+|...++.....-...++..|-..|-+++...+++.-.... ......|+.+.-.|++
T Consensus 1269 --QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1269 --QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred --HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence 22222233344445566666666677766666665543211 1233445555544544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.8e-07 Score=93.57 Aligned_cols=245 Identities=15% Similarity=0.100 Sum_probs=189.9
Q ss_pred CchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHc
Q 047659 47 NPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRI 125 (619)
Q Consensus 47 ~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (619)
.++.|.++-+.+.. |++.-.|..+.....+.++.++|+++.++++.......+. +-.-+|.++++.-...
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee---------EKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE---------EKLNIWIAYLNLENAY 1510 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH---------HHHHHHHHHHhHHHhh
Confidence 66678888887777 8899999999999999999999999999998864211100 0000788888887888
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhcCCHHHHHHHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
|.-+...++|+++.+.- . .-..+..|...|.+.+.+++|.++++.|.+.-. .+|...+..+.+..+-+.|..++.
T Consensus 1511 G~eesl~kVFeRAcqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred CcHHHHHHHHHHHHHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 88888999999998742 2 345678899999999999999999999988655 349999999999999999999999
Q ss_pred HHHHCCCCC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047659 203 QVIQRGFVP--NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV 280 (619)
Q Consensus 203 ~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 280 (619)
++++.- +. ....-...+..-.+.|+.+.++.+|+..+...|+ ....|+..++.-.+.|+.+.+..+|++....++.
T Consensus 1589 rAL~~l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1589 RALKSL-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHhhc-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 998873 22 2334445556667889999999999999876444 6778999999999999999999999999988777
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHH
Q 047659 281 PDL--IIYSILIDGLFKAGRLKEGNE 304 (619)
Q Consensus 281 ~~~--~~~~~ll~~~~~~~~~~~a~~ 304 (619)
|-. ..|...+..--..|+-+.++.
T Consensus 1667 ~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred hhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 643 345555655555555444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=0.00011 Score=74.42 Aligned_cols=503 Identities=13% Similarity=0.091 Sum_probs=280.1
Q ss_pred ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMS 155 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 155 (619)
-.+++.+|.....+..+..|+..- +...-+-.+.+.|+.++|..+++.....++. |..+...+-.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~--------------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~ 85 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALY--------------AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQN 85 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHH
Confidence 567899999999999999887643 2222233467899999999999888766554 8889999999
Q ss_pred HHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-C----
Q 047659 156 CLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING-Q---- 228 (619)
Q Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~---- 228 (619)
+|.+.++.++|..+|+++....|+. ...+..+|.+.+++.+-.++--++-+. ++.+...+=.+++.+.... .
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999943 777788888888877665555444443 3444554445555554421 1
Q ss_pred -----cchHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047659 229 -----IGNASSLFDVLLLVG-PKPNVVTFSTLINAFCKEAKLEKAFQLYN-LMMEMDLVPDLIIYSILIDGLFKAGRLKE 301 (619)
Q Consensus 229 -----~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 301 (619)
..-|.+.++.+.+.+ .--+..-.......+...|++++|++++. ..-+.-..-+...-+.-+..+...+++.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 223556666666543 22222223333445567888999999994 33333333445555667778888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHH-----HHHHHH--------HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---h
Q 047659 302 GNELLLTALDRGLKLDVVVF-----SSVMDA--------YVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLC---Q 365 (619)
Q Consensus 302 a~~~~~~~~~~~~~~~~~~~-----~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~ 365 (619)
..++-.++...|.. |-.+| ..+-.. +...+..+...+...+..... ....|-+-+.+.. .
T Consensus 245 l~~l~~~Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~ 320 (932)
T KOG2053|consen 245 LFELSSRLLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKL 320 (932)
T ss_pred HHHHHHHHHHhCCc-chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcc
Confidence 99999999988643 31121 111111 111122333333333322210 1112222233322 4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh---------hHHHHHhc----
Q 047659 366 QGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV---------VCSLLING---- 432 (619)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~ll~~---- 432 (619)
-|+.+++...|-+-. |..| .|..=+..|...=..+.-..++...... .++.. +....+..
T Consensus 321 ~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~ 393 (932)
T KOG2053|consen 321 IGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGL 393 (932)
T ss_pred cCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhc
Confidence 577777655443321 1121 1222222232222233333333333221 11111 00000000
Q ss_pred ----cHHHHHHHHHHHH---hC------CCCCCHh---------hHHHHHHHHHhcCChhH---HHHHHHHHhhCCCCCC
Q 047659 433 ----LMGDALRFFFQSV---RM------TLIPNLF---------IFNTLMDGCCRLKRATD---TVKLFMLMGMYNIKPD 487 (619)
Q Consensus 433 ----~~~~a~~~~~~~~---~~------~~~~~~~---------~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~ 487 (619)
..+.....+.+.. +. +..|+.. +.+.|++.+.+.++... |+-+++.-.... +.|
T Consensus 394 ~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hn 472 (932)
T KOG2053|consen 394 YEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHN 472 (932)
T ss_pred cccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-Ccc
Confidence 1222222222211 11 2233322 34678888888887763 444444444332 456
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 047659 488 VITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNM 567 (619)
Q Consensus 488 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 567 (619)
..+--.+|+.|+..|-+..|.++|..+--..+.-|..-|. +..-+...|++..+...+....+- ...+..--.-+|..
T Consensus 473 f~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~ 550 (932)
T KOG2053|consen 473 FQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIAL 550 (932)
T ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHH
Confidence 6666788899999999999999999887766666655443 344456678888888888877663 11122212223333
Q ss_pred HHHcCCHHHHHHHH---HHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 047659 568 LIKECNLDAALKLF---GQLTDRGLEPDIITYNTIICGYCSLNS 608 (619)
Q Consensus 568 ~~~~g~~~~A~~~~---~~~~~~g~~p~~~~~~~ll~~~~~~~~ 608 (619)
..+.|.+.+..++. +++...-..--..+-+..++-.+..++
T Consensus 551 AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 551 AYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 44557666655543 333322112223334444444444444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-07 Score=86.51 Aligned_cols=188 Identities=10% Similarity=-0.007 Sum_probs=139.9
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+..+..+...+..+...|++++|...|++++..+|.++.. ..++..++.++.+.|++++|+..++.+.+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA-----------EQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4556677889999999999999999999999988865421 11678899999999999999999999998
Q ss_pred CCCCCCH--HhHHHHHHHHHhc--------CChhHHHHHHHHHhhCCccc-hH--HHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 141 MGIYLSP--DLVQRLMSCLVDS--------NSVGQYYKLCRAMRGKGFCV-YE--FLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 141 ~~~~~~~--~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~-~~--~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
..|.... .++..+..++.+. |+++.|++.|+++....|+. .. .+... .. ... ..
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~-~~---~~~------~~--- 165 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM-DY---LRN------RL--- 165 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH-HH---HHH------HH---
Confidence 7654222 2566667777654 77899999999999888833 21 11111 00 000 00
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 208 GFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPK-P-NVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 208 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
......+...+.+.|++++|...++......+. | ....+..+..++.+.|++++|...++.+...
T Consensus 166 -----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011225667789999999999999999876432 2 3568889999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-08 Score=85.25 Aligned_cols=122 Identities=11% Similarity=0.139 Sum_probs=77.1
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC 156 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (619)
.++.+++...+++.+..+|++.+ .|..++..|...|++++|...|++..+..+. ++..+..+..+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~--------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSE--------------QWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 55556666666666666666655 6666666666677777777777666665544 56666666665
Q ss_pred H-HhcCC--hhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 047659 157 L-VDSNS--VGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV 214 (619)
Q Consensus 157 ~-~~~~~--~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 214 (619)
+ ...|+ .++|.+++++..+.+| ++ +..+...+...|++++|...++.+.+.. +|+..
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 3 45455 3666777776666666 22 6666666666677777777777666664 44443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-07 Score=80.95 Aligned_cols=174 Identities=15% Similarity=0.050 Sum_probs=135.3
Q ss_pred hHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCCh
Q 047659 50 PAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKI 128 (619)
Q Consensus 50 ~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 128 (619)
.+..+...... |.+.+. ..+...+...|+-+.+..+..+....+|+... ....++....+.|++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~--------------ll~~~gk~~~~~g~~ 116 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE--------------LLAAQGKNQIRNGNF 116 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH--------------HHHHHHHHHHHhcch
Confidence 44444444444 555666 77888888888888888888888777776655 445588888899999
Q ss_pred hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 129 DESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 129 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
..|+..|++.....+ +|..+|+.+.-+|.+.|+++.|...|.+..+..+ ++ .+.+.-.+.-.|+.+.|..++....
T Consensus 117 ~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 117 GEAVSVLRKAARLAP-TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred HHHHHHHHHHhccCC-CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987654 4888999999999999999999999999888777 22 8888888888888888888888887
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 206 QRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 206 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
..+ ..|..+-..+..+....|+++.|.++...-.
T Consensus 196 l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 196 LSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 765 5567777777777888888888887766543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.7e-06 Score=89.89 Aligned_cols=366 Identities=12% Similarity=0.003 Sum_probs=223.0
Q ss_pred HHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF 117 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (619)
...+...|++.+|...+..+.. +.-.......+..+...|+++.+...++.+..... ...+.....
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~-------------~~~~~l~~~ 414 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVL-------------LENPRLVLL 414 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHH-------------hcCcchHHH
Confidence 3344556666666654444432 11111122233444556666666665554422100 011113345
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCC------CC--HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cc------h
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIY------LS--PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CV------Y 181 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~------~ 181 (619)
....+...|++++|...++.....-.. +. ......+...+...|++++|...++......+ +. .
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 566667889999999999887543111 11 12223344556789999999999998876433 21 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhC----CCC--C-Chh
Q 047659 182 EFLMNGLLRKGVIENAFHMHRQVIQRGF---VPN--IVTCNKILKRLCINGQIGNASSLFDVLLLV----GPK--P-NVV 249 (619)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~ 249 (619)
..+...+...|+++.|...+++.....- .+. ......+...+...|+++.|...+++.... +.. + ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 5566667789999999999988875411 111 234455667778899999999998876642 211 1 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH---
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEM--DLVP--DLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL-DVVVF--- 321 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--- 321 (619)
.+..+...+...|++++|...+++.... ...+ ....+..+...+...|+.+.|.+.+.......... ....+
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 3445556677789999999998887553 1112 23344556667788999999999988875431110 11111
Q ss_pred --HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 047659 322 --SSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNV---ISYSILIKGLCQQGRLVEACGLFGQVLIR----RLEP-SLLTY 391 (619)
Q Consensus 322 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 391 (619)
...+..+...|+.+.|.+.+............ ..+..+..++...|++++|...++..... +..+ ...+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 11224445688999999988776543211111 11345666788899999999999887653 2222 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 392 SSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 392 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
..+..++.+.|+.++|...+.+..+.
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66677888999999999999998775
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-07 Score=96.73 Aligned_cols=144 Identities=10% Similarity=0.000 Sum_probs=121.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.+.+++..++.+..+.|++++|..+++.+++..|+... ++..++..+.+.+++++|+..+++.+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~--------------a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE--------------AFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH--------------HHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 567888889999999999999999999999998887766 788889999999999999999999998
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc---chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC---VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
..|. +......+..++.+.|++++|.++|+++...+|+ .+..+..++...|+.++|...|+..++.- .+....|+
T Consensus 149 ~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~ 226 (694)
T PRK15179 149 GGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLT 226 (694)
T ss_pred cCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHH
Confidence 7766 7888888999999999999999999999887773 28888888889999999999999998873 44455555
Q ss_pred HHH
Q 047659 218 KIL 220 (619)
Q Consensus 218 ~ll 220 (619)
..+
T Consensus 227 ~~~ 229 (694)
T PRK15179 227 RRL 229 (694)
T ss_pred HHH
Confidence 443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-08 Score=81.38 Aligned_cols=110 Identities=11% Similarity=0.067 Sum_probs=75.7
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHH
Q 047659 53 QFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESV 132 (619)
Q Consensus 53 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 132 (619)
.+|+.+.. .++..+...+..+.+.|++++|...|++++..+|.+.+ +|..++.++.+.|++++|+
T Consensus 14 ~~~~~al~-~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 14 DILKQLLS-VDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR--------------AHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHH-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH--------------HHHHHHHHHHHHhhHHHHH
Confidence 34444443 23334556677777777777777777777777776665 6677777777777777777
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 133 EIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..|+++...++. ++..+..+..++...|++++|+..|+..++..|
T Consensus 79 ~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 79 NFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 777777776543 667777777777777777777777777777766
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6e-08 Score=79.52 Aligned_cols=97 Identities=11% Similarity=-0.041 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+|+.+......+...|++++|...|+.+.. |.+..++..++.++.+.|++++|...|++++..+|.+.+
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~--------- 93 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE--------- 93 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH---------
Confidence 344444444444455555555555555444 444455555555555555555555555555554444433
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+..++.++.+.|++++|+..|+..+..
T Consensus 94 -----a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 94 -----PVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-05 Score=88.86 Aligned_cols=340 Identities=10% Similarity=0.011 Sum_probs=221.7
Q ss_pred HHHHHHccCCchhHHHHHHHhhc---CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCch-hHHHHHHhhcCCCcc
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN---CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTY-NFFRLFRDSLGDFGC 113 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 113 (619)
....+...|+++.+...++.+.. ..++......+..+...|++++|...++.+....+... ...... ...
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~------~~~ 453 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL------QAE 453 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH------HHH
Confidence 33445567888887777776643 34555556677777889999999999988866422110 000000 000
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c------c
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP----DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C------V 180 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~------~ 180 (619)
....+...+...|++++|...++.........+. .....+...+...|++++|...+++...... + .
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 2334556677899999999999998764232232 2345667778889999999999988764322 1 1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhC----CCCCChh
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQR----GFV--P-NIVTCNKILKRLCINGQIGNASSLFDVLLLV----GPKPNVV 249 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~ 249 (619)
+..+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +......
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 555677788999999999998887663 211 1 1233445556677789999999999887642 1111233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEM----DLVPDLIIY--SILIDGLFKAGRLKEGNELLLTALDRGLKLD---VVV 320 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 320 (619)
.+..+...+...|+++.|.+.+...... +........ ...+..+...|+.+.|..++........... ...
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 4555667788899999999999887542 111111011 1122444567899999998877554221111 112
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 321 FSSVMDAYVGIGDVGRAVQTYDRMLNG----GFLPN-VISYSILIKGLCQQGRLVEACGLFGQVLIRR 383 (619)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (619)
+..+..++...|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+.....
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 345677788999999999999887653 22221 2345566778889999999999999998764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-06 Score=89.81 Aligned_cols=198 Identities=10% Similarity=-0.024 Sum_probs=147.8
Q ss_pred ccCChhhHHHHHHHHHccCCchhH-HHHHHHhhcCCCCccHHHHHHHHHccCChh---HHHHHHHHHHHhcCCchhHHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPA-IQFFKWTHNCVSSPNIAQLIHVLLQSDMRD---VASHVFDKMVIQFGKTYNFFRL 103 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~ 103 (619)
+..+|..++..=..+..-|..++| .++..++. .++.+.|... ++..-+......++...+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 87 (694)
T PRK15179 24 PASGPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRRYPHTEL---- 87 (694)
T ss_pred CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHhccccHH----
Confidence 445665555555555556666555 44444444 2222333333 333333333444444333
Q ss_pred HHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---
Q 047659 104 FRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--- 180 (619)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 180 (619)
++..|+....+.|.+++|..+++...+..|. +...+..++.++.+.+++++|+..+++.....|+.
T Consensus 88 ----------~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 88 ----------FQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred ----------HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 8999999999999999999999999997655 77889999999999999999999999999999943
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTL 254 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 254 (619)
...+..++.+.|++++|..+|+++...+ +-+..++..+...+-..|+.++|...|+...+. ..+....|+..
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 8888899999999999999999999854 556888999999999999999999999999865 23334444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-07 Score=79.00 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=70.9
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHH-HhcCC--HHHHH
Q 047659 125 IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGL-LRKGV--IENAF 198 (619)
Q Consensus 125 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~-~~~~~--~~~A~ 198 (619)
.++.++++..++..++.+|. +...|..+...|...|++++|+..|+++.+..| +. +..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 45556666666666665444 666666666666666666666666666666666 22 55555542 44454 36666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 199 HMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
+++++.++.+ +.+..++..+...+...|++++|...++++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666664 445556666666666666666666666666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-07 Score=85.78 Aligned_cols=149 Identities=10% Similarity=0.012 Sum_probs=111.9
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.....+...+......|++++|+..++..+...|+++- .+......+.+.|+.++|.+.++++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~--------------~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY--------------YLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 566777777888888888888888888888888777654 566777788888888888888888887
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
..|. .+..+..+..+|.+.|++.+|+.++.+.....| |+ |..+.++|...|+..++.....+...
T Consensus 369 l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~----------- 436 (484)
T COG4783 369 LDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA----------- 436 (484)
T ss_pred cCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH-----------
Confidence 6444 366677788888888888888888888887777 44 88888888888888877776665532
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
..|++++|...+....+.
T Consensus 437 -------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 437 -------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -------hCCCHHHHHHHHHHHHHh
Confidence 346677777666666654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=87.76 Aligned_cols=150 Identities=14% Similarity=0.060 Sum_probs=66.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCcc
Q 047659 155 SCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI----NGQIG 230 (619)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~ 230 (619)
.++...|++++|++++... .+.+.....+.++++.++++.|.+.++.|.+.+ .| .+...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence 4444555666555554432 111224444555555555555555555555432 12 222222222221 22455
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 047659 231 NASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRL-KEGNELLLTA 309 (619)
Q Consensus 231 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 309 (619)
+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+.+.++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 555555554433 3344455555555555555555555555555443322 344444444444444444 3344444444
Q ss_pred HH
Q 047659 310 LD 311 (619)
Q Consensus 310 ~~ 311 (619)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.0002 Score=68.32 Aligned_cols=454 Identities=13% Similarity=0.060 Sum_probs=228.5
Q ss_pred HHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047659 88 DKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYY 167 (619)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 167 (619)
++-++.+|.+.+ +|+.|++-+..+ .++++++.++++...-|. .+..|..-++...+.++++...
T Consensus 10 ~~rie~nP~di~--------------sw~~lire~qt~-~~~~~R~~YEq~~~~FP~-s~r~W~~yi~~El~skdfe~VE 73 (656)
T KOG1914|consen 10 RERIEENPYDID--------------SWSQLIREAQTQ-PIDKVRETYEQLVNVFPS-SPRAWKLYIERELASKDFESVE 73 (656)
T ss_pred HHHHhcCCccHH--------------HHHHHHHHHccC-CHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhhHHHHH
Confidence 445556666555 899999988877 999999999999876333 7788999999999999999999
Q ss_pred HHHHHHhhCCc--cchHHHHHHHHh-cCCHH----HHHHHHHHHHHC-CCCC-ChhhHHHHHHH---------HHhcCCc
Q 047659 168 KLCRAMRGKGF--CVYEFLMNGLLR-KGVIE----NAFHMHRQVIQR-GFVP-NIVTCNKILKR---------LCINGQI 229 (619)
Q Consensus 168 ~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~----~A~~~~~~~~~~-~~~~-~~~~~~~ll~~---------~~~~~~~ 229 (619)
.+|.+++..-- |.|..-+...-+ .|... .-.+.|+-.+.. |+.+ ....|+..+.. +..+.+.
T Consensus 74 kLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI 153 (656)
T KOG1914|consen 74 KLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRI 153 (656)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHH
Confidence 99999876544 445444443332 22222 223344444433 3222 22345554443 2234456
Q ss_pred chHHHHHHHHHhCCCCCChhhHHH------HHHHH-------HhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFST------LINAF-------CKEAKLEKAFQLYNLMMEM--DLVPDLIIYSILIDGLF 294 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~------l~~~~-------~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~ 294 (619)
+..++++.++....+..=...|+- -+... -+...+..|.++++++... |......+ .-
T Consensus 154 ~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp 226 (656)
T KOG1914|consen 154 TAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VP 226 (656)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CC
Confidence 667777777764321110111211 11111 1123455566666665432 22211111 00
Q ss_pred hcCCHHH--HHHHHHHHH----HcCCC-CC--------HHHHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 295 KAGRLKE--GNELLLTAL----DRGLK-LD--------VVVFSSVMDAYVGIGD-VGRAVQTYDRMLNGGFLPNVISYSI 358 (619)
Q Consensus 295 ~~~~~~~--a~~~~~~~~----~~~~~-~~--------~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (619)
..|-.++ ..+++.... +.++. .+ ..+|...+..+.-+-+ |-++-..+....+ ++..
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~--------l~~~ 298 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD--------LLTE 298 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH--------HHHH
Confidence 0010011 111111111 00010 00 1111111111111100 1111111111110 0000
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHc-CCCCCHhhHHHHHhc--
Q 047659 359 LIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSG---KLRDGFSLYDNMIKR-GLKPDAVVCSLLING-- 432 (619)
Q Consensus 359 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~-- 432 (619)
....-......+++.++++.....-..-+..+|..+...--..- ..+.....++.+... ...|+. +|...++.
T Consensus 299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~ir 377 (656)
T KOG1914|consen 299 KGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIR 377 (656)
T ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHH
Confidence 00000000113445555555443322223333433332211111 244455555554432 223332 22222222
Q ss_pred ---cHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 047659 433 ---LMGDALRFFFQSVRMTLIP-NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAI 508 (619)
Q Consensus 433 ---~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 508 (619)
.+..|+.+|.+..+.+..+ ++.+++++|.-|| .++..-|.++|+.-.+.- ..++.--...++-+...++-..+.
T Consensus 378 R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R 455 (656)
T KOG1914|consen 378 RAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNAR 455 (656)
T ss_pred HhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHH
Confidence 4555666666666655555 6677888888777 578888999998544331 233444466777778888888999
Q ss_pred HHHHHHHHCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHC-C--CCcCHHHHHHHHHHHHHcCCHH
Q 047659 509 LLFFQMLKRGLTPD--VITYSAIIHGLFKGKNISVGLHMFKLMERN-G--VAPDIAIYNVLLNMLIKECNLD 575 (619)
Q Consensus 509 ~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~ 575 (619)
.+|++....++.|+ ..+|..+++--..-|+...+.++-+++... . ..+....-..+++-|.-.+.+.
T Consensus 456 ~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 456 ALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 99999988866655 468999999888899999988888777653 1 2222233345555555555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-06 Score=88.66 Aligned_cols=232 Identities=9% Similarity=0.066 Sum_probs=114.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHH-HHHHhh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFF-RLFRDS 107 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ 107 (619)
..+....++..+...+++++|.++.+...+ |.....+..++.++.+.++++.|..+ .++...+.+.++. ..+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 444666666666677788888887776665 66667777777777777776666665 5544433332210 000001
Q ss_pred ----cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHH
Q 047659 108 ----LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEF 183 (619)
Q Consensus 108 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (619)
.+....++..++.+|-+.|+.++|..+++++++.++. |+.+.+.++..|... +.++|.+++.+++.
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-------- 177 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIY-------- 177 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHH--------
Confidence 1112224444555555555555555555555554433 455555555555555 55555555444432
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047659 184 LMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK 263 (619)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (619)
.+...+++..+.+++..+.... +-+...+..+.......- |...-..++-.+-..|-..++
T Consensus 178 ---~~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 178 ---RFIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR---------------EFTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred ---HHHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh---------------ccchhHHHHHHHHHHHhhhhh
Confidence 2444445555555555554442 122222222221111110 111122333444455555666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047659 264 LEKAFQLYNLMMEMDLVPDLIIYSILIDGLF 294 (619)
Q Consensus 264 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 294 (619)
|+++..+++.+.+.... |.....-++.+|.
T Consensus 239 ~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 239 WDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 66666666666665333 4444555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-06 Score=79.58 Aligned_cols=144 Identities=11% Similarity=0.013 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~ 190 (619)
.+......+...|.+++|+..++.++...|. |+..+.....++.+.++.++|.+.++++....|+. ...+..++.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 5666667777889999999999998887554 88888888999999999999999999999999843 7788889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
.|++.+|..++....... +.|+..|..|..+|...|+..++.....+... ..|+++.|...
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHH
Confidence 999999999999988875 78888999999999999999988888777642 46788888888
Q ss_pred HHHHHhC
Q 047659 271 YNLMMEM 277 (619)
Q Consensus 271 ~~~m~~~ 277 (619)
+....+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 8777765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.1e-07 Score=83.78 Aligned_cols=253 Identities=11% Similarity=0.009 Sum_probs=127.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 047659 257 AFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGR 336 (619)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (619)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.+ +.++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777775555 22222122334455566777777765543 23333322 4455555444444433344445
Q ss_pred HHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047659 337 AVQTYDRMLNGGFLPNVISY-SILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMI 415 (619)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 415 (619)
+..-+++....+..++..++ ......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54444444333222222222 22223445567777777666432 245555666677777777777777777766
Q ss_pred HcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047659 416 KRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLI 495 (619)
Q Consensus 416 ~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 495 (619)
+. ..|... .....+.+..+.-...+.+|..+|+++.+. ..+++.+.|.+.
T Consensus 159 ~~--~eD~~l---------------------------~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 159 QI--DEDSIL---------------------------TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp CC--SCCHHH---------------------------HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred hc--CCcHHH---------------------------HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 53 122100 011222222222233567777777776554 346666677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHHHH
Q 047659 496 RGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNI-SVGLHMFKLMER 551 (619)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 551 (619)
.++...|++++|.+++.+..+.+ +-+..+...++.+....|+. +.+.+++.++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77777777777777777766543 22445555566666666665 555666666655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-06 Score=75.17 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKG 192 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~ 192 (619)
..+...+...|+-+.+..+........+. +.......+....+.|++..|+..+++.....| |. |+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 45555555666666666666555443222 445555566666666666666666666665555 22 555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
+++.|..-|.+..+.- ..+....+.+.-.+.-.|+++.|..++......+ ..|...-+.+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555555555542 3334444455555555555555555555554432 2244444445555555555555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-05 Score=84.89 Aligned_cols=221 Identities=17% Similarity=0.147 Sum_probs=92.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHH
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI-----VTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLI 255 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 255 (619)
|...|..+...++.++|++++++++.. +.+.. -.|.++++....-|.-+...++|+++.+. -.....|..|.
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHH
Confidence 444444444444444444444444433 11111 12333333333334444444444444431 11122344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCH
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL-DVVVFSSVMDAYVGIGDV 334 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~ 334 (619)
..|.+.+.+++|-++|+.|.+. +......|...+..+.+.++-+.|..++.+..+.-++. ........+..-.+.||.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 4444445555555555554443 11233444444444444444444444444444331110 111222223333344555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHH
Q 047659 335 GRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL--LTYSSLIDGFCKSGKLRD 406 (619)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~ 406 (619)
+.+..+|+...... +.-...|+..+..-.+.|+.+.+..+|+++...++.|.. ..|..++..--+.|+-..
T Consensus 1617 eRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 55555555444431 223444555555555555555555555555544433321 234444444344444333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-06 Score=73.64 Aligned_cols=159 Identities=9% Similarity=-0.070 Sum_probs=96.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..|+.+++..|+.+.|....+.+.. |.+.++-..-+..+-..|.+++|.++|++.++.+|.+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v------------ 121 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV------------ 121 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH------------
Confidence 445566666666666777666666665 666666666666666667777777777777666665543
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGL 188 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~ 188 (619)
++-.-+...-.+|+..+|++.++...+.- ..|.++|..+...|...|+++.|.-.+++++-..| ++ +..+...+
T Consensus 122 --~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 122 --IRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred --HHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 44455555556666666666666666652 33666777777777777777777666666666666 33 33333333
Q ss_pred Hh---cCCHHHHHHHHHHHHHC
Q 047659 189 LR---KGVIENAFHMHRQVIQR 207 (619)
Q Consensus 189 ~~---~~~~~~A~~~~~~~~~~ 207 (619)
.. ..+...|.+.+.+.++.
T Consensus 199 Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 199 YTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh
Confidence 32 22445555666665554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00032 Score=66.97 Aligned_cols=447 Identities=12% Similarity=0.100 Sum_probs=251.7
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047659 136 AYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPN 212 (619)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 212 (619)
++-++.+|. |..+|+.|++-+..+ ..+++++.++++...-|.+ |..-++.....++++....+|.+.+.. ..+
T Consensus 10 ~~rie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLn 85 (656)
T KOG1914|consen 10 RERIEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLN 85 (656)
T ss_pred HHHHhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--Hhh
Confidence 344455454 899999999988655 8999999999999998833 888999999999999999999999887 567
Q ss_pred hhhHHHHHHHHHh-cCCcchH----HHHHHHHH-hCCCCC-ChhhHHHHHHH---------HHhcCCHHHHHHHHHHHHh
Q 047659 213 IVTCNKILKRLCI-NGQIGNA----SSLFDVLL-LVGPKP-NVVTFSTLINA---------FCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 213 ~~~~~~ll~~~~~-~~~~~~A----~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~m~~ 276 (619)
...|...++.-.+ .|+...+ .+.|+-.. +.|..+ +...|+..+.- |..+.+++...++|+++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 8888888765443 3444432 23344333 334332 23345554443 3334466777788888775
Q ss_pred CCCCC------CHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHcCCCHH--HHHH
Q 047659 277 MDLVP------DLIIYSILIDGLF-------KAGRLKEGNELLLTALD--RGLKLDVVVFSSVMDAYVGIGDVG--RAVQ 339 (619)
Q Consensus 277 ~~~~~------~~~~~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~--~a~~ 339 (619)
.-+.- |-..|..-|+... +...+-.|.++++++.. .|......+ .-..|--+ ...+
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~ 238 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVE 238 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHH
Confidence 42211 1111211111111 12234445555554432 121111000 00001111 1111
Q ss_pred HHHHHHh----CCCC-CC--------HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhc
Q 047659 340 TYDRMLN----GGFL-PN--------VISYSILIKGLCQQG-RLVEACGLFGQVLI----RRLEPSLLTYSSLIDGFCKS 401 (619)
Q Consensus 340 ~~~~~~~----~~~~-~~--------~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~ 401 (619)
++....+ +++. .+ ..+|+..+..+.-.. -|-++..++....+ .|-.|+..
T Consensus 239 ~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~------------ 306 (656)
T KOG1914|consen 239 LWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK------------ 306 (656)
T ss_pred HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch------------
Confidence 2211111 1111 00 011111111111110 11122222211111 11111111
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHhc--------cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 047659 402 GKLRDGFSLYDNMIKRGLKPDAVVCSLLING--------LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTV 473 (619)
Q Consensus 402 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 473 (619)
...+++..+++.....-..-+...+..+... ..+....++.+.......--..+|...|....+..-+..|.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 1134555555555443222233333322221 12233344444443322223456788888888889999999
Q ss_pred HHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 047659 474 KLFMLMGMYNIKP-DVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERN 552 (619)
Q Consensus 474 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (619)
.+|.+..+.+..+ ++...++++.-||. +|.+-|..+|+.-++. +.-+..-....++-+.+.++-..|..+|++....
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999877666 77788888887764 7899999999987764 2334444567888888999999999999999988
Q ss_pred CCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHhhcC
Q 047659 553 GVAPD--IAIYNVLLNMLIKECNLDAALKLFGQLTDR-G--LEPDIITYNTIICGYCSLN 607 (619)
Q Consensus 553 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g--~~p~~~~~~~ll~~~~~~~ 607 (619)
++.|+ ..+|..++..-..-|+...+.++-+++... . ..|.-..-..+++-|.=.|
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 66655 469999999999999999999998887752 1 2222233444555554433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.1e-06 Score=84.73 Aligned_cols=233 Identities=11% Similarity=0.036 Sum_probs=174.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHH----HhhcCCCcccHHHHHHHHHHcCChhhHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLF----RDSLGDFGCDYSFLIENYVRIGKIDESVEIFA 136 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 136 (619)
|.+..+|..++..+...|++++|..+.+..+..+|+....+-.. ...-+..+.....++.......++.....+++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 78889999999999999999999999999999999887754211 11111222233377777777778866666677
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 047659 137 YMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI 213 (619)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 213 (619)
.+.+. ..+..++..++.+|-+.|+.++|..+++++++.+| ++ .+.++-.+... +.++|.+++.+++..
T Consensus 108 ~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 108 KILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 77663 33667899999999999999999999999999999 54 88899999988 999999999888765
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 047659 214 VTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM-DLVPDLIIYSILIDG 292 (619)
Q Consensus 214 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~ 292 (619)
+...+++..+.+++.++....+. +...+- ++.+.+... |..--..++..+-..
T Consensus 179 ---------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 179 ---------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred ---------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhhhccchhHHHHHHHHHH
Confidence 66778999999999999875332 222222 222333322 223344566667778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047659 293 LFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYV 329 (619)
Q Consensus 293 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (619)
|-..++++++..+++.+.+.... |.....-++..|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 88889999999999999987654 6666666666665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-07 Score=73.38 Aligned_cols=103 Identities=14% Similarity=0.040 Sum_probs=67.9
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+......++..+.+.|++++|...+++++..+|.+.. .+..++..+...|++++|...++...+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR--------------YWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455566666666777777777777777666665554 566667777777777777777777666
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.++. ++..+..+..++...|++++|...|+...+..|
T Consensus 80 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 80 LDPD-DPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred cCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5433 566666666667777777777777766666655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-06 Score=85.14 Aligned_cols=238 Identities=15% Similarity=0.108 Sum_probs=166.2
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
|---....++..+...|-...|...+++.. .|...+.+|...|+..+|..+..+-++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle----------------------mw~~vi~CY~~lg~~~kaeei~~q~le- 452 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE----------------------MWDPVILCYLLLGQHGKAEEINRQELE- 452 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH----------------------HHHHHHHHHHHhcccchHHHHHHHHhc-
Confidence 333334577888888888888888888774 567778888888888888888777776
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
-+|++..|..++++.....-++.|+++.+..-.+ .-..+.......++++++.+.++.-.+.. +....+|.....
T Consensus 453 -k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~ 527 (777)
T KOG1128|consen 453 -KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGC 527 (777)
T ss_pred -CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccH
Confidence 3457777777877777777777788777664332 11222223334678888888888877775 666777877777
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047659 222 RLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKE 301 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 301 (619)
+..+.++++.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++
T Consensus 528 ~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHH
Confidence 888888888888888887764222 4667888888888888888888888888877633 55666666777778888888
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 047659 302 GNELLLTALDRG-LKLDVVVFSSVMDAYV 329 (619)
Q Consensus 302 a~~~~~~~~~~~-~~~~~~~~~~ll~~~~ 329 (619)
|.+.+..+.... ...|..+...++....
T Consensus 606 a~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 606 AIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 888887776432 1114444444444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-06 Score=82.25 Aligned_cols=127 Identities=12% Similarity=0.067 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
++.....++..+...++++.|+.+|+.+.. .++++...+++++...++-.+|.+++.+.+...|.+.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~-~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~----------- 235 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRE-RDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE----------- 235 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHh-cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH-----------
Confidence 333444444444444444555555554442 23344444444444444444455554444444443332
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
....-+..+.+.++++.|+.+.+++....|. +..+|..|+.+|...|+++.|+-.+..+
T Consensus 236 ---LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 ---LLNLQAEFLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 3333344444444445555555444443222 3344444444554444444444444443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.4e-08 Score=55.49 Aligned_cols=32 Identities=34% Similarity=0.695 Sum_probs=19.0
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047659 553 GVAPDIAIYNVLLNMLIKECNLDAALKLFGQL 584 (619)
Q Consensus 553 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (619)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666665555
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-06 Score=80.61 Aligned_cols=295 Identities=15% Similarity=0.164 Sum_probs=218.0
Q ss_pred cccccCChhhHHHHHHHHHccCCch----hHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 25 THISDLQFNQANAILANLIKTNNPT----PAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
++...+..+.+..++...+.+.... .+..+.+...+... -..+.+.+.+.....+|++..+..+...-.-.
T Consensus 315 tp~d~la~E~l~p~~~~iL~q~~~~w~i~~salllr~~~E~~~---~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~-- 389 (777)
T KOG1128|consen 315 TPHDMLAEEELEPLTSTLLSQTEKYWSIQASALLLRFLLESTR---SRTVERALSQMQFLVKAIQMKEYSVLNRLSYI-- 389 (777)
T ss_pred CCcchhHHHHHHHHHHHHhhccCCceeeehHHHHHHHHHHhcC---ccchhhHHHHHHHHHHHHhhccHhHHhccccc--
Confidence 3345667778888888887776333 22233333332111 12344455555555555555555444321111
Q ss_pred HHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc
Q 047659 101 FRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV 180 (619)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (619)
+...+|+.......++..+...|-...|..+|++. ..|..++.+|+..|+.++|..+..+-.++.|++
T Consensus 390 ---ya~~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~ 457 (777)
T KOG1128|consen 390 ---YAPHLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDP 457 (777)
T ss_pred ---ccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc
Confidence 13346777778899999999999999999999887 468889999999999999999999988877766
Q ss_pred --hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047659 181 --YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAF 258 (619)
Q Consensus 181 --~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 258 (619)
|..++.......-+++|.++.+....+ +-..+.......++++++.+.|+.-.+.++ -...+|-.+..+.
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~A 529 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAA 529 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHH
Confidence 777777766666778888887766543 222333334457899999999998877533 3577898999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 047659 259 CKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAV 338 (619)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 338 (619)
.+.++++.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|.
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHH
Confidence 9999999999999998875322 5678999999999999999999999999998743 6677888888889999999999
Q ss_pred HHHHHHHh
Q 047659 339 QTYDRMLN 346 (619)
Q Consensus 339 ~~~~~~~~ 346 (619)
+.+.++..
T Consensus 608 ~A~~rll~ 615 (777)
T KOG1128|consen 608 KAYHRLLD 615 (777)
T ss_pred HHHHHHHH
Confidence 99998875
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=55.10 Aligned_cols=32 Identities=34% Similarity=0.707 Sum_probs=17.1
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 047659 518 GLTPDVITYSAIIHGLFKGKNISVGLHMFKLM 549 (619)
Q Consensus 518 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 549 (619)
|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-06 Score=69.91 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 047659 85 HVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG 164 (619)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (619)
..|++++..+|.+.. ....++..+.+.|++++|.+.|+.+...++. ++..+..+...+...|+++
T Consensus 4 ~~~~~~l~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 4 ATLKDLLGLDSEQLE--------------QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hhHHHHHcCChhhHH--------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHH
Confidence 345666666665544 6677888888899999999999998887654 7888888888888899999
Q ss_pred HHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 165 QYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 165 ~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
+|...++...+.+| +. +..+..++...|+++.|.+.++...+..
T Consensus 69 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 69 EAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999988888777 22 7777788888888888888888888763
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.5e-05 Score=65.40 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=76.0
Q ss_pred ChhhHHHHHHHHHc--cCCchhHHHHHHHhhc----C-CCCccH---HHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 31 QFNQANAILANLIK--TNNPTPAIQFFKWTHN----C-VSSPNI---AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 31 ~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~----~-~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
+-+.+...+..+.. ..++++.++++..+.. . ..++-| -.++.+.+-.|+.+.|..-+++...++|++..
T Consensus 9 ~~~~l~~~~~~wr~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R- 87 (289)
T KOG3060|consen 9 SWEELRDQMRKWREETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR- 87 (289)
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh-
Confidence 44444455554432 4456666666666554 0 111111 23444455556666666665555555544433
Q ss_pred HHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c
Q 047659 101 FRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C 179 (619)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 179 (619)
+-..-+..+-..|++++|+++++..++.+|. |..++..-+.+.-.+|+.-+|++.+....+.-+ |
T Consensus 88 -------------V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D 153 (289)
T KOG3060|consen 88 -------------VGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND 153 (289)
T ss_pred -------------HHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc
Confidence 2222222333455666666666666555433 445554444444455555555555544444333 2
Q ss_pred c--hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 180 V--YEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 180 ~--~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
. |..+...|...|++++|.-.+++++-
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 1 44444444444444444444444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-05 Score=66.61 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047659 222 RLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK----EAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAG 297 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 297 (619)
.+.+..+.+.|.+.+++|.+- .+..+.+.|..++.+ .+....|.-+|++|.+. ..|+..+.+....++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 344445555555555555431 133344444444332 23455555555555542 3455555555555555556
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHh
Q 047659 298 RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGD-VGRAVQTYDRMLN 346 (619)
Q Consensus 298 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~ 346 (619)
++++|+.++++....... ++.+...++-.-...|. .+...+.+.+++.
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 666666666555555433 33333333333333333 2333344444444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-05 Score=71.51 Aligned_cols=194 Identities=10% Similarity=-0.029 Sum_probs=120.4
Q ss_pred cCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccH---HHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 21 SESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNI---AQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
++.....++.+++.+........+.|++++|++.|+.+.. |.++.+. ..++.++.+.+++++|...+++.++.+|
T Consensus 21 s~~~~~~~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 21 SGSKEEVPDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 4444455677888888889999999999999999999998 5554444 5788899999999999999999999999
Q ss_pred CchhHHHHHHhhcCCCcccHHHHHHHHHHcC---------------C---hhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 96 KTYNFFRLFRDSLGDFGCDYSFLIENYVRIG---------------K---IDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
++++. +.++..++.++...+ | ...|...|+.+++.-|. +..
T Consensus 101 ~~~~~-----------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-S~y--------- 159 (243)
T PRK10866 101 THPNI-----------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-SQY--------- 159 (243)
T ss_pred CCCch-----------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-Chh---------
Confidence 88663 113333333321111 2 23566777777775443 111
Q ss_pred HhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047659 158 VDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQR--GFVPNIVTCNKILKRLCINGQIGNASSL 235 (619)
Q Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 235 (619)
..+|...+..+...-..--..+.+.|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.+.
T Consensus 160 -----a~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 160 -----TTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 111111111111000000123455666677777777777777665 2223344455666777777777777766
Q ss_pred HHHHH
Q 047659 236 FDVLL 240 (619)
Q Consensus 236 ~~~~~ 240 (619)
...+.
T Consensus 235 ~~~l~ 239 (243)
T PRK10866 235 AKIIA 239 (243)
T ss_pred HHHHh
Confidence 65543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.001 Score=57.83 Aligned_cols=150 Identities=16% Similarity=0.128 Sum_probs=73.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cC
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYV----GI 331 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 331 (619)
..|+..|++++|++...... +......=+..+.+..+.+.|.+.++.|.+-. +..+.+.|..++. ..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 44555566666665554411 22222222333445555566666666665432 3344444444433 23
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHH
Q 047659 332 GDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKL-RDGFSL 410 (619)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~ 410 (619)
+.+..|.-+|++|.+. .+|+..+.+-...++...|++++|..+++....+... ++.+...++-+-...|.. +...+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 4456666666666553 3456666666666666666666666666666655333 334433333333333433 223344
Q ss_pred HHHHHH
Q 047659 411 YDNMIK 416 (619)
Q Consensus 411 ~~~~~~ 416 (619)
+.++..
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=66.09 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=74.6
Q ss_pred ccCChhHHHHHHHHHHHhcCCch-hHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC--HHhHHH
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTY-NFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS--PDLVQR 152 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 152 (619)
..|+...+...++.+...+|.+. ... +...++..+...|++++|...|+.+....+.|+ +.....
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~------------A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAAL------------AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHH------------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 46777777777777777776652 111 555667777778888888888888877653332 234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
+..++...|++++|+..++......... +.....++...|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777777777777777776543322222 555556666666666666666543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=67.84 Aligned_cols=101 Identities=9% Similarity=-0.029 Sum_probs=89.3
Q ss_pred cccCC-hh---hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 27 ISDLQ-FN---QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 27 ~~~~~-~~---~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
+.+++ ++ .+......+...|++++|..+|+.+.. |.+...|..++.++-+.|++++|+..|.++...+|+++.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~- 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ- 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch-
Confidence 35556 55 455566667889999999999998887 999999999999999999999999999999999888777
Q ss_pred HHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 101 FRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+..++.++...|+.+.|.+.|+..+..
T Consensus 105 -------------~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 105 -------------APWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999998765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.6e-06 Score=66.99 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=84.9
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+.+....++..+...|++++|.++|+.....+|.+.+ .|..|+.++...|++++|+..|......
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~--------------y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD--------------YWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45566777888888999999999999999998888877 7888999999999999999999999888
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
++. ++..+..+..++...|+.+.|.+.|+..+..
T Consensus 99 ~~d-dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 99 KID-APQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred CCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 764 8888888999999999999998888877653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-05 Score=65.96 Aligned_cols=125 Identities=12% Similarity=0.039 Sum_probs=96.6
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
+..++.. ...++...+...++.+.. |.+ ..+...++..+...|++++|...|+.++...+++.-.
T Consensus 15 y~~~~~~-~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~--------- 84 (145)
T PF09976_consen 15 YEQALQA-LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK--------- 84 (145)
T ss_pred HHHHHHH-HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH---------
Confidence 3334443 468999999998998887 444 2444568889999999999999999999976543210
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
..+...|+..+...|++++|+..++.... ....+..+...+.+|.+.|++++|+..|+..
T Consensus 85 --~~a~l~LA~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 --PLARLRLARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 11667889999999999999999977533 2335667888999999999999999999875
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.8e-05 Score=69.17 Aligned_cols=112 Identities=6% Similarity=-0.113 Sum_probs=84.1
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC---ChhhHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG---KIDESVEIFAY 137 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 137 (619)
|.+.+.|..++.++.++|+++.|...|.++.+..|++++ .+..++.++..+. .-.++.++|++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~--------------~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE--------------ILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 788888888888888888888888888888888888777 5555555555443 33567888888
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c-chHHHHHH
Q 047659 138 MSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C-VYEFLMNG 187 (619)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~l~~~ 187 (619)
++..++. |+.+...+...+..+|++.+|...++.|.+..| + ++..++..
T Consensus 219 al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 219 ALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 8887655 777888888888888888888888888888777 3 35555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=77.44 Aligned_cols=92 Identities=5% Similarity=-0.056 Sum_probs=51.1
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCccc
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCD 114 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (619)
.....+...|++++|+++|+.+.. |.+...+..++.++.+.|++++|...+++++..+|.... +
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~--------------a 72 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK--------------A 72 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH--------------H
Confidence 334445555555555555555554 555555555555555555555555555555555554443 4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
|..++.+|...|++++|+..|+++++.+
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 5555555555555555555555555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-05 Score=63.65 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=52.1
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.+...+..+.+.|++++|...|++++..+|++.. ...++..++.++.+.|+++.|...|+.+....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-----------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-----------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 4445555555556666666666555555443211 00144455555555566666666665555433221
Q ss_pred --CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 146 --SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 146 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+.++..+..++.+.|++++|...++++.+..|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 134455555555555555555555555555444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-05 Score=71.36 Aligned_cols=92 Identities=12% Similarity=0.072 Sum_probs=49.4
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+..-...+++.++|.+|++.|..++. |.++.-|...+.+|.+.|.++.|.+-.+.++..+|..+.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk------------- 150 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK------------- 150 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH-------------
Confidence 33334444555555555555555555 555555555555555555555555555555555554443
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+|..|..+|...|++++|++.|++.++
T Consensus 151 -ay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 151 -AYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred -HHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 555555555555555555555555555
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-05 Score=63.01 Aligned_cols=102 Identities=13% Similarity=-0.042 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
++.+......+.+.|++++|...|+.+.. |.+ +.++..++.++.+.|+++.|...|++++..+|....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------- 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK------- 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc-------
Confidence 45667788888999999999999999987 333 357788999999999999999999999998776421
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.+.++..++.++.+.|++++|...++++.+..|.
T Consensus 75 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 75 ----APDALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred ----ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 1126888899999999999999999999987654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=61.15 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=62.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
+..++..+...|++++|...+++++...|.... ++..++..+...|++++|.+.|+......+. +
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNAD--------------AYYNLAAAYYKLGKYEEALEDYEKALELDPD-N 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-c
Confidence 455666666677777777777777666555433 5666666777777777777777776665433 4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 177 (619)
...+..++.++...|+++.|...+....+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 4566666666666777777776666655443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.9e-05 Score=72.54 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcc
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIG 230 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 230 (619)
..++..+...++++.|+++|+++.+..|++...+++.+...++-.+|.+++.+.++.. +.+..........+.+.++++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 4445555566667777777777777666665566666666666667777776666553 445555555556666667777
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 231 NASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 231 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
.|.++.+++....|. +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 252 lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777776664221 34467777777777777777776666654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.4e-05 Score=67.00 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=56.8
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
|+.+++.+..........|++.+|+..|+.+.. |.+ +.+...++.++.+.|+++.|...+++.+...|.++.
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 456788899999999999999999999999997 433 355677889999999999999999999999998765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00019 Score=64.61 Aligned_cols=188 Identities=8% Similarity=-0.077 Sum_probs=129.0
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.++..+...+..+...|++++|...|+++....|.+.... .+...++.+|.+.+++++|+..+++.++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~-----------~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQ-----------QVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455566778888899999999999999999988765421 14567889999999999999999999988
Q ss_pred CCCCCHH--hHHHHHHHHHhcC---------------C---hhHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHHHHHHH
Q 047659 142 GIYLSPD--LVQRLMSCLVDSN---------------S---VGQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIENAFHM 200 (619)
Q Consensus 142 ~~~~~~~--~~~~l~~~~~~~~---------------~---~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~ 200 (619)
.|..... ++..++.++...+ + ...|+..|+.+++..|++ |...++ ..
T Consensus 99 ~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~------------~r 166 (243)
T PRK10866 99 NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT------------KR 166 (243)
T ss_pred CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH------------HH
Confidence 6663322 3333333221111 1 245778888888888855 543332 22
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 201 HRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP--KPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
+..+... =..--..+...|.+.|.+..|..-++.+.+.-+ +........++.+|...|..++|.+....+..
T Consensus 167 l~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 167 LVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 2222111 001112566778899999999999999997522 22345677888999999999999988876654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.9e-05 Score=73.73 Aligned_cols=96 Identities=7% Similarity=-0.042 Sum_probs=82.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
...+..+...|++++|+..|++++..+|.+.. .|..++.+|.+.|++++|+..+++++...+. ++
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~--------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~ 70 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE--------------LYADRAQANIKLGNFTEAVADANKAIELDPS-LA 70 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CH
Confidence 34566777889999999999999998887766 7888888999999999999999999887654 77
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..+..++.+|...|++++|+..|+++++.+|
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 8888888899999999999999999888887
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.5e-05 Score=63.75 Aligned_cols=97 Identities=6% Similarity=-0.072 Sum_probs=71.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.....+..++..+...|++++|...|++++...+...+ ....+..++..+.+.|++++|...++++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-----------RSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344456677888888899999999999999876554321 011778888899999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKL 169 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 169 (619)
..+. +...+..+..++...|+...+..-
T Consensus 101 ~~p~-~~~~~~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 101 LNPK-QPSALNNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred hCcc-cHHHHHHHHHHHHHcCChHhHhhC
Confidence 6544 567777778888777775444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.3e-06 Score=59.62 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=60.2
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC 156 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (619)
+|+++.|+..+++++...|.+++.. .+..++.+|.+.|++++|..+++. .+.++. +......++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~------------~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSA------------YLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHH------------HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHH------------HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHH
Confidence 6888999999999999887532211 556688999999999999999988 433222 44566667888
Q ss_pred HHhcCChhHHHHHHHH
Q 047659 157 LVDSNSVGQYYKLCRA 172 (619)
Q Consensus 157 ~~~~~~~~~A~~~~~~ 172 (619)
+.+.|++++|++.|++
T Consensus 68 ~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHTT-HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhc
Confidence 8899999999888875
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.011 Score=55.83 Aligned_cols=447 Identities=14% Similarity=0.131 Sum_probs=236.0
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHh------HHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHHHH--h
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDL------VQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNGLL--R 190 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~--~ 190 (619)
-.+.+++++.+|..+|.++.+.... ++.. -..++.+|. .++.+.....+....+..+ ..|..+..++. +
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~-~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKES-SPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhc-chHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3466889999999999999765322 3332 244666664 4455666666666666666 44777766554 7
Q ss_pred cCCHHHHHHHHHHHHHC--CCCC------------ChhhHHHHHHHHHhcCCcchHHHHHHHHHhC----CCCCChhhHH
Q 047659 191 KGVIENAFHMHRQVIQR--GFVP------------NIVTCNKILKRLCINGQIGNASSLFDVLLLV----GPKPNVVTFS 252 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~ 252 (619)
.+.+++|.+.+..-... +..+ |...-+..++.+...|++.+++.+++++... ....+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 89999999988776655 2221 2222345567778899999999988887643 3447888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047659 253 TLINAFCKEAKLEKAFQLYNLMME---MDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYV 329 (619)
Q Consensus 253 ~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (619)
.++-.+.+. .|-++++ .++-|+ -|. ++-.|.+. ...++...-..+.|-...+..++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd--yYe-milfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD--YYE-MILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH--HHH-HHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 866655442 2323322 122232 222 22222211 011111111112233333333333332
Q ss_pred cC--CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcC
Q 047659 330 GI--GDVGRAVQTYDRMLNGGFLPNVIS-YSILIKGLCQQGRLVEACGLFGQVLIRRLEP----SLLTYSSLIDGFCKSG 402 (619)
Q Consensus 330 ~~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~ 402 (619)
-. ....--+++++.....-+.|+... ...+...+.+ +.+++..+-+.+....+.+ =..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112222233333333333344322 2223333332 3444444433332221110 1234566666666667
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHhc----------------cHHHHHHHHHHHHhCCCCCCHhhHHHH---HHHH
Q 047659 403 KLRDGFSLYDNMIKRGLKPDAVVCSLLING----------------LMGDALRFFFQSVRMTLIPNLFIFNTL---MDGC 463 (619)
Q Consensus 403 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----------------~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~ 463 (619)
+...|.+.+.-+... .|+...-.-++-. ....-+.+++.+....+. .-....-| ..-+
T Consensus 313 ~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHL 389 (549)
T ss_pred hHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHH
Confidence 766666666655443 3332221111111 233333444444433221 11111122 2334
Q ss_pred HhcCC-hhHHHHHHHHHhhCCCCCCHhhHHHHHH----HHHh---cCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHH
Q 047659 464 CRLKR-ATDTVKLFMLMGMYNIKPDVITHTVLIR----GIAS---QGSLSSAILLFFQMLKRGLTPD----VITYSAIIH 531 (619)
Q Consensus 464 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 531 (619)
.+.|. -++|+.+++.+.... +-|...-|.+.. +|.. ...+.+-..+=+-+.+.|+.|- ...-|.+.+
T Consensus 390 W~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 45555 788999999887653 334444333322 2222 2334444555555556687763 233444444
Q ss_pred H--HHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 532 G--LFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNT 598 (619)
Q Consensus 532 ~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 598 (619)
+ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|.+++..+ +|+..+++.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 3 4568999988766555555 7899999999999999999999999999875 566555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=1e-05 Score=47.75 Aligned_cols=33 Identities=42% Similarity=0.796 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 560 IYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577778888888888888888888877777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.3e-05 Score=55.37 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
++..+.+.|++++|...|++++..+|.+.+ ++..++.++.+.|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~--------------a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPE--------------AWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHH--------------HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445556666666666666666666555554 5566666666666666666666666554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00022 Score=66.40 Aligned_cols=181 Identities=12% Similarity=0.086 Sum_probs=78.7
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCC---chhHHHHHHhhcCCCcccHHHHHHHHH
Q 047659 47 NPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK---TYNFFRLFRDSLGDFGCDYSFLIENYV 123 (619)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (619)
++++|..+|+.+- ..+-..|++++|...|.++...... .... ...|...+.+|.
T Consensus 30 ~~e~Aa~~y~~Aa------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~A-----------a~~~~~Aa~~~k 86 (282)
T PF14938_consen 30 DYEEAADLYEKAA------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEA-----------AKAYEEAANCYK 86 (282)
T ss_dssp HHHHHHHHHHHHH------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHH-----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHHHH
Confidence 4555555555444 5666677777777777776553211 1110 003333333333
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhc-CCHHHHHHHHH
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRK-GVIENAFHMHR 202 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 202 (619)
+. ++++|++.++... ..|...|++..|-..+.++ ...|-.. |+++.|.+.|.
T Consensus 87 ~~-~~~~Ai~~~~~A~---------------~~y~~~G~~~~aA~~~~~l-----------A~~ye~~~~d~e~Ai~~Y~ 139 (282)
T PF14938_consen 87 KG-DPDEAIECYEKAI---------------EIYREAGRFSQAAKCLKEL-----------AEIYEEQLGDYEKAIEYYQ 139 (282)
T ss_dssp HT-THHHHHHHHHHHH---------------HHHHHCT-HHHHHHHHHHH-----------HHHHCCTT--HHHHHHHHH
T ss_pred hh-CHHHHHHHHHHHH---------------HHHHhcCcHHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 33 5556655555553 2333444444443333322 2233333 44455554444
Q ss_pred HHHHC----CCC-CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-----hh-hHHHHHHHHHhcCCHHHHHHHH
Q 047659 203 QVIQR----GFV-PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN-----VV-TFSTLINAFCKEAKLEKAFQLY 271 (619)
Q Consensus 203 ~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~~a~~~~ 271 (619)
++.+. |.+ .-...+..+...+.+.|++++|.++|+++...-...+ .. .|...+-++...||...|.+.|
T Consensus 140 ~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 140 KAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44332 100 0012233444555666666666666666554321111 11 1222233444556666666666
Q ss_pred HHHHhC
Q 047659 272 NLMMEM 277 (619)
Q Consensus 272 ~~m~~~ 277 (619)
+.....
T Consensus 220 ~~~~~~ 225 (282)
T PF14938_consen 220 ERYCSQ 225 (282)
T ss_dssp HHHGTT
T ss_pred HHHHhh
Confidence 665543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0014 Score=60.68 Aligned_cols=276 Identities=11% Similarity=0.038 Sum_probs=155.2
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+...-..+.++.++.+|+..+..+++ |.+.+.|..-+..+..-|++++|.--.++.++..+.-+.
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k----------- 118 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK----------- 118 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc-----------
Confidence 3555566667778888899999988887 777888888888888889999888888877776554433
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHH---------------HHHhCCCC-CCHHhHHH-HHHHHHhcCChhHHHHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFA---------------YMSDMGIY-LSPDLVQR-LMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~---------------~~~~~~~~-~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~ 173 (619)
.+....+++...++..+|.+.++ ........ |.-..+.. -..++.-.|++++|...-..+
T Consensus 119 ---~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 119 ---GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred ---cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 34444445555555555544443 11111111 11122211 224455566666666666666
Q ss_pred hhCCc-cchHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh
Q 047659 174 RGKGF-CVYEFLMNG--LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVT 250 (619)
Q Consensus 174 ~~~~~-~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 250 (619)
.+.++ +.+...++. +-..++.+.|...|.+.+..+ |+...-... -.-.+.++.+...
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~----------~~~~k~le~~k~~-------- 255 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA----------SMMPKKLEVKKER-------- 255 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH----------hhhHHHHHHHHhh--------
Confidence 66665 333333333 335666666666666666553 332211111 0111112222221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047659 251 FSTLINAFCKEAKLEKAFQLYNLMMEM---DLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDA 327 (619)
Q Consensus 251 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 327 (619)
..-..+.|++..|.+.|.+.+.. +..|+...|........+.|+.++|+.-.+.....+.. -...+..-..+
T Consensus 256 ----gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c 330 (486)
T KOG0550|consen 256 ----GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANC 330 (486)
T ss_pred ----hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHH
Confidence 12234677777777777777654 34455556666666667777777777777666654210 11122222334
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 047659 328 YVGIGDVGRAVQTYDRMLNG 347 (619)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~ 347 (619)
+...++|++|.+-+++..+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777776654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.012 Score=54.30 Aligned_cols=306 Identities=12% Similarity=0.076 Sum_probs=165.1
Q ss_pred chhHHHHHHHhhcCCCCccHHHH--HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHc
Q 047659 48 PTPAIQFFKWTHNCVSSPNIAQL--IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRI 125 (619)
Q Consensus 48 ~~~A~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (619)
+..+..+|+.-+ ..+.|-.+ +.+..-.|+-..|+++-.+.-+.-....+.+ ++..-.++-.-.
T Consensus 69 P~t~~Ryfr~rK---RdrgyqALStGliAagAGda~lARkmt~~~~~llssDqepL------------IhlLeAQaal~e 133 (531)
T COG3898 69 PYTARRYFRERK---RDRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPL------------IHLLEAQAALLE 133 (531)
T ss_pred cHHHHHHHHHHH---hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHH------------HHHHHHHHHHhc
Confidence 444555555444 22333333 3344456677777777666654433333321 344445555566
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH----HhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL----VDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~ 198 (619)
|++++|.+-|+.|.. ++++...=++++ .+.|..+.|+.+-++.....|.. +...+...+..|+++.|+
T Consensus 134 G~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 134 GDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred CchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 777777777777754 444433323222 35677777777777777666632 666677777777777777
Q ss_pred HHHHHHHHCC-CCCChhh--HHHHHHHHH---hcCCcchHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHH
Q 047659 199 HMHRQVIQRG-FVPNIVT--CNKILKRLC---INGQIGNASSLFDVLLLVGPKPNVVT-FSTLINAFCKEAKLEKAFQLY 271 (619)
Q Consensus 199 ~~~~~~~~~~-~~~~~~~--~~~ll~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~ 271 (619)
++.+.-.... +.++..- -..|+.+-. -.-+...|...-.+..+ ..||... -.....++.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 7777665542 2333221 222222211 12344555555444444 3455332 223345677777788887887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 047659 272 NLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR-GLKL-DVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF 349 (619)
Q Consensus 272 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (619)
+.+-+....|+.. .. -.+.+.|+ .+.+-++..... ..+| +......+..+....|++..|..--+.....
T Consensus 287 E~aWK~ePHP~ia--~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-- 358 (531)
T COG3898 287 ETAWKAEPHPDIA--LL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-- 358 (531)
T ss_pred HHHHhcCCChHHH--HH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--
Confidence 7777665444432 11 11233333 333333333221 1222 4455556666777777777777666655553
Q ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCC
Q 047659 350 LPNVISYSILIKGLC-QQGRLVEACGLFGQVLIRR 383 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~ 383 (619)
.|....|-.|...-. ..|+-.++...+.+..+..
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 566666666655443 3477777777777776553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=55.80 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=53.9
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
....+.+.|++++|+..|+.+.. |.+..++..++.++.+.|++++|...|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45667889999999999999998 8899999999999999999999999999999998875
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0014 Score=57.28 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=69.2
Q ss_pred ccccccCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHH
Q 047659 16 NKCYCSESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKM 90 (619)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (619)
..|..+..+.-....+++.+-.-...-++.|++.+|...|+.+.. |.+ ..+...++-++.+.++++.|....++.
T Consensus 18 ~~cs~~~~~~~~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 18 TGCSGDKDKNGVYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred ccCCcchhhccccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344333333345778999999999999999999999999999887 433 445567888889999999999999999
Q ss_pred HHhcCCchhH
Q 047659 91 VIQFGKTYNF 100 (619)
Q Consensus 91 ~~~~~~~~~~ 100 (619)
+..+|.+++.
T Consensus 98 i~lyP~~~n~ 107 (254)
T COG4105 98 IRLYPTHPNA 107 (254)
T ss_pred HHhCCCCCCh
Confidence 9999988774
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.9e-06 Score=60.32 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=64.3
Q ss_pred ccCCchhHHHHHHHhhc--CC--CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHN--CV--SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
.+|+++.|+.+|+.+.. |. +...+..++.++.+.|++++|..++++ ...++.+.. ....++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~--------------~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD--------------IHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH--------------HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH--------------HHHHHH
Confidence 36899999999999998 42 345667789999999999999999999 555555544 555779
Q ss_pred HHHHHcCChhhHHHHHHHH
Q 047659 120 ENYVRIGKIDESVEIFAYM 138 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~ 138 (619)
.++.+.|++++|+++|++.
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999863
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=46.84 Aligned_cols=33 Identities=39% Similarity=0.695 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 047659 559 AIYNVLLNMLIKECNLDAALKLFGQLTDRGLEP 591 (619)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 591 (619)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356677777777777777777777777666665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.6e-05 Score=58.35 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=80.4
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+..+...+...|++++|+..++.+.. +.+...+..++.++...|++++|...+++.+...|....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------- 69 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK------------- 69 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh-------------
Confidence 34556667789999999999999887 556678889999999999999999999999987776554
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..++..+...|+++.|...++...+..
T Consensus 70 -~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 70 -AYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred -HHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 78899999999999999999999987643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=46.80 Aligned_cols=33 Identities=42% Similarity=0.752 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTPD 522 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 522 (619)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555544
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00019 Score=61.06 Aligned_cols=83 Identities=6% Similarity=-0.102 Sum_probs=58.2
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+..++..+...|++++|...|++++...+.+.+. ..++..++.+|...|++++|+..++......+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~-----------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR-----------SYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4555677777888888888888888887765543210 11677888888888888888888888877643
Q ss_pred CCCHHhHHHHHHHHH
Q 047659 144 YLSPDLVQRLMSCLV 158 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~ 158 (619)
. ....+..+..++.
T Consensus 104 ~-~~~~~~~la~i~~ 117 (168)
T CHL00033 104 F-LPQALNNMAVICH 117 (168)
T ss_pred C-cHHHHHHHHHHHH
Confidence 3 4555666666666
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=54.90 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=44.8
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...|++++|...|++++..+|.+.+ ++..++.+|.+.|++++|.++++++....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPE--------------ARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHH--------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888888888888888888777 777888888888999888888888887543
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=56.86 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=30.3
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
.....+-..|+.++|+.+|+.+.. +...+++..++..+...|++++|..++++.+...|+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 344444445555555555555554 111234445555555555555555555555554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.6e-05 Score=54.76 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=58.3
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC-ChhhHHHHHHHHHhC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG-KIDESVEIFAYMSDM 141 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 141 (619)
++..|..++..+...|++++|+..|+++++.+|.++. ++..++.+|.+.| ++++|++.++..++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~--------------~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE--------------AYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH--------------HHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--------------HHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4567888999999999999999999999999888777 8899999999999 799999999998875
Q ss_pred C
Q 047659 142 G 142 (619)
Q Consensus 142 ~ 142 (619)
+
T Consensus 68 ~ 68 (69)
T PF13414_consen 68 D 68 (69)
T ss_dssp S
T ss_pred C
Confidence 4
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=64.82 Aligned_cols=90 Identities=9% Similarity=0.021 Sum_probs=42.9
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
+.+.++|++|...|.+++..+|.++. .|..-+.+|.+.|.++.|++-.+..+..++. ...+|..|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAV--------------yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RL 155 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAV--------------YYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRL 155 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcch--------------HHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHH
Confidence 34444555555555555554444433 3444444555555555555555544443322 33444445
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 154 MSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 154 ~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..+|...|++++|++.|++.++.+|
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCC
Confidence 5555555555555555555444444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00058 Score=61.03 Aligned_cols=99 Identities=11% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHhhCCc-cc--hH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS---VGQYYKLCRAMRGKGF-CV--YE 182 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~--~~ 182 (619)
|++...|..|+..|.+.|+++.|...|.+..+..++ |+..+..+..++..+.+ ..++..+|+++++.++ |+ ..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 444447888888888888888888888888776544 77777777776654332 2466677777777666 43 55
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
.+...+...|++.+|...++.|++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 55666666677777777777766663
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0003 Score=59.80 Aligned_cols=89 Identities=8% Similarity=-0.091 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYL--SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGL 188 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~ 188 (619)
.+..++..+...|++++|+..|++.....+.+ .+.++..+..++...|++++|+..++++....++. +..+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 67888888889999999999999998764433 23578888899999999999999999988776622 55555555
Q ss_pred H-------hcCCHHHHHHHHH
Q 047659 189 L-------RKGVIENAFHMHR 202 (619)
Q Consensus 189 ~-------~~~~~~~A~~~~~ 202 (619)
. ..|+++.|...++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHH
Confidence 5 5555554443333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.3e-05 Score=45.71 Aligned_cols=32 Identities=34% Similarity=0.556 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTP 521 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 521 (619)
+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00019 Score=56.79 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=66.3
Q ss_pred cccCChhhHHHHHHHHHccCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 27 ISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
.++.++..+..-....++.|++.+|.+.|+.+.. +-...+...++.++.+.|++++|...+++.++.+|.+++.
T Consensus 5 ~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 5 VPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 5778999999999999999999999999999998 4444666789999999999999999999999999988663
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.026 Score=53.20 Aligned_cols=155 Identities=16% Similarity=0.191 Sum_probs=118.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-HHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYN-IKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITY-SAI 529 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l 529 (619)
-..+|...+....+..-.+.|..+|-+..+.+ +.+++..+++++..++ .|+...|..+|+.-+.. -||...| .-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567778888888888899999999998887 6778888888888766 47888888998876654 3454443 556
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 047659 530 IHGLFKGKNISVGLHMFKLMERNGVAPD--IAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN 607 (619)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 607 (619)
+.-+...++-+.|..+|+..... +..+ ..+|..+|..-..-|+...+..+-++|.. +-|-..+.....+.|.-.+
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhc
Confidence 66677888888999999866553 2223 56888999888889999999988888887 5777777788888887777
Q ss_pred ccccc
Q 047659 608 SCLID 612 (619)
Q Consensus 608 ~~~~~ 612 (619)
|+.+.
T Consensus 550 da~~~ 554 (660)
T COG5107 550 DAILP 554 (660)
T ss_pred cccCC
Confidence 66543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00051 Score=62.30 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=67.2
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC--CCHHhHHH
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY--LSPDLVQR 152 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ 152 (619)
.+.|++++|...|+.++..+|+..-. +.++..++.+|...|++++|...|+.+.+..|. ..+.++..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a-----------~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQ-----------PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 55688888888888888877765210 116778888888888888888888888765333 13556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCcc
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (619)
++.++...|+.+.|...|+.+++..|+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 777777788888888888888777763
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00085 Score=57.26 Aligned_cols=86 Identities=6% Similarity=-0.104 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS--PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGL 188 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~ 188 (619)
.+..++..+...|++++|...|+++++..+.+. ...+..++.++.+.|++++|+..+.++.+..| +. +..+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 688889999999999999999999987654433 46788899999999999999999999998887 22 66777778
Q ss_pred HhcCCHHHHHH
Q 047659 189 LRKGVIENAFH 199 (619)
Q Consensus 189 ~~~~~~~~A~~ 199 (619)
...|+...+..
T Consensus 117 ~~~g~~~~a~~ 127 (172)
T PRK02603 117 HKRGEKAEEAG 127 (172)
T ss_pred HHcCChHhHhh
Confidence 77777555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00021 Score=57.90 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=61.3
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+......+..+|++++|..+|+-+-. +.+++-|.+++.++-..+++++|...|..+...+++++.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~------------- 106 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR------------- 106 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC-------------
Confidence 33344445667777777777776555 666666777777777777777777777777665544433
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
.....+.+|...|+.+.|+..|+.++.
T Consensus 107 -p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 -PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 556667777777777777777777765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.1e-05 Score=55.08 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=52.6
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
++++|++++|++.|+.+.. |.+..++..++.++.+.|++++|...+++++..+|+++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 3578999999999999988 889999999999999999999999999999999988654
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00031 Score=67.53 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=68.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHH
Q 047659 485 KPDVITHTVLIRGIASQGSLSSAILLFFQMLKR--GLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYN 562 (619)
Q Consensus 485 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 562 (619)
+.+......++..+....+++.+..++.+.... ....-..|..++++.|...|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444555555555555556666665555543 111122334466666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 047659 563 VLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606 (619)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 606 (619)
.|++.+.+.|++..|.++...|...+.-.++.|+.-.+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666655554445555555555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00035 Score=52.05 Aligned_cols=77 Identities=22% Similarity=0.470 Sum_probs=45.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047659 529 IIHGLFKGKNISVGLHMFKLMERNGV-APDIAIYNVLLNMLIKEC--------NLDAALKLFGQLTDRGLEPDIITYNTI 599 (619)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~g~~p~~~~~~~l 599 (619)
.|..|...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444566666666666666665 556666666655554432 233455667777776677777777777
Q ss_pred HHHHhh
Q 047659 600 ICGYCS 605 (619)
Q Consensus 600 l~~~~~ 605 (619)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 766654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00093 Score=52.02 Aligned_cols=99 Identities=9% Similarity=-0.043 Sum_probs=59.9
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.+...++.++-..|+.++|...|++.+......... ...+..+...+...|++++|..+|+......|.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~-----------~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADR-----------RRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 345566677777777777777777777754333221 015666777777777777777777777664332
Q ss_pred C--CHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 145 L--SPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 145 ~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+ +......+..++...|+.++|++.+-...
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 12222334445566777777777665543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0019 Score=60.20 Aligned_cols=59 Identities=7% Similarity=0.029 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc----CCC----CccHHHHHHHHHccCChhHHHHHHHHHHH
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN----CVS----SPNIAQLIHVLLQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (619)
+.+......+-..|++++|.+.|..+.. ..+ ...+...+.++ +.+++++|...|++++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Confidence 3566666666779999999999998875 111 11122233333 33366666666666654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00045 Score=64.00 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047659 454 FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRG-IASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHG 532 (619)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 532 (619)
.+|..++...-+.+..+.|..+|....+.+ ..+...|...... |...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367788888888889999999999998543 3344455544444 33357788899999999985 56678889999999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047659 533 LFKGKNISVGLHMFKLMERNGVAPD---IAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYC 604 (619)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 604 (619)
+.+.|+.+.|..+|++.... +.++ ...|..++..-.+.|+.+.+.++.+++.+ .-|+......+++-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRYS 151 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT-
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHhh
Confidence 99999999999999999875 3333 35999999999999999999999999998 4666666666776664
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.01 Score=48.73 Aligned_cols=117 Identities=11% Similarity=0.029 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchHHHHHHHH
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYEFLMNGLL 189 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~ 189 (619)
...|..++...|+..+|...|++...--.-.|+.....+.++....+++..|...++++-+.+| |......+.+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 4456666666666666666666665433334566666666666666666666666666655544 22444555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHH
Q 047659 190 RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNAS 233 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 233 (619)
..|.+..|...|+..+.. -|+....-.....+.+.|+.+++.
T Consensus 172 a~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 172 AQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 555665555555555554 333333333334444555444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00061 Score=65.54 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=35.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047659 458 TLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGL 533 (619)
Q Consensus 458 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 533 (619)
+++..|...|..+.++.+++.=...|+-||..++|.+|+.+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 4444444444444444444444444444555555555555544455544444444444444333444443333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0014 Score=53.55 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=106.9
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
.+.....+.=|++.+..-...-.. .++......++..+...|++.+|...|++.+.. + +..+....
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~------------fA~d~a~l 127 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-I------------FAHDAAML 127 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-c------------cCCCHHHH
Confidence 344444444455544433333332 445566678888999999999999999998863 1 22223367
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIY-LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKG 192 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~ 192 (619)
..+.++....+++..|...++.+-+.++. .++.....+.+.|...|.+.+|...|+......|+. .......+.+.|
T Consensus 128 LglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qg 207 (251)
T COG4700 128 LGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQG 207 (251)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 78888888889999999999988775432 245566778888999999999999999988887744 444455566777
Q ss_pred CHHHHHHHHHHHHH
Q 047659 193 VIENAFHMHRQVIQ 206 (619)
Q Consensus 193 ~~~~A~~~~~~~~~ 206 (619)
+.+++..-+..+.+
T Consensus 208 r~~ea~aq~~~v~d 221 (251)
T COG4700 208 RLREANAQYVAVVD 221 (251)
T ss_pred chhHHHHHHHHHHH
Confidence 77776655555444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.047 Score=55.80 Aligned_cols=207 Identities=16% Similarity=0.138 Sum_probs=132.7
Q ss_pred cccchhhhHHhhccccccccCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCC
Q 047659 2 LLKFKNLLTVWRSINKCYCSESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM 79 (619)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 79 (619)
+-.+-++...|+ ..+..=++...+..+.+-.+...+..+.+..-++-|+.+.+.-.. ..-.......+.-+.+.|+
T Consensus 306 l~~l~d~l~~w~--~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgd 383 (933)
T KOG2114|consen 306 LEDLSDNLIEWS--FDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGD 383 (933)
T ss_pred HHHHHHHHHhcC--CcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 345567778888 344444555666778888889999999999999999999887664 1122333456677778899
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047659 80 RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD 159 (619)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (619)
+++|...|-+.+.--. -..++.-|....+...-...++.+.+.|.. +...-..|+.+|.+
T Consensus 384 f~~A~~qYI~tI~~le-------------------~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiK 443 (933)
T KOG2114|consen 384 FDEATDQYIETIGFLE-------------------PSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIK 443 (933)
T ss_pred HHHHHHHHHHHcccCC-------------------hHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHH
Confidence 9999888887775311 123455555666666677777777777665 55666777888888
Q ss_pred cCChhHHHHHHHHHhhCCc-c-chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 047659 160 SNSVGQYYKLCRAMRGKGF-C-VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFD 237 (619)
Q Consensus 160 ~~~~~~A~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 237 (619)
.++.+.-.+..+... .|. - -....+..+.+.+-.+.|.-+...... .......+ +-..|++++|.+.+.
T Consensus 444 lkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 444 LKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYIS 514 (933)
T ss_pred hcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHh
Confidence 888777776666554 222 1 155555666666666666554443322 22222322 334567777777776
Q ss_pred HH
Q 047659 238 VL 239 (619)
Q Consensus 238 ~~ 239 (619)
.+
T Consensus 515 sl 516 (933)
T KOG2114|consen 515 SL 516 (933)
T ss_pred cC
Confidence 66
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0012 Score=57.97 Aligned_cols=179 Identities=13% Similarity=0.051 Sum_probs=110.4
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++......+..+...|++.+|...|+++....|.+.-. +.+...++.++.+.|+++.|...+++.++..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a-----------~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA-----------PQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34556677888999999999999999999998875432 1277889999999999999999999998876
Q ss_pred CCCCH--HhHHHHHHHHHhc-----------CChhHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 143 IYLSP--DLVQRLMSCLVDS-----------NSVGQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 143 ~~~~~--~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
|.... .++..++.++... +...+|+..|+.++...|++ |.. +|.+.+..+...
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~------------~A~~~l~~l~~~- 139 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE------------EAKKRLAELRNR- 139 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH------------HHHHHHHHHHHH-
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH------------HHHHHHHHHHHH-
Confidence 55322 2333344333221 22346777777777776643 333 232222222211
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHH
Q 047659 209 FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN--VVTFSTLINAFCKEAKLEKAF 268 (619)
Q Consensus 209 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~ 268 (619)
=...--.+...|.+.|.+..|..-++.+++.-+... ......++.+|.+.|..+.+.
T Consensus 140 ---la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 140 ---LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ---HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 011122356778888888888888888887522211 234566778888888777443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00062 Score=55.21 Aligned_cols=100 Identities=8% Similarity=-0.083 Sum_probs=75.5
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
...+.....+.-+.+.|++++|..+|+-....++.+++ .+..|+.++...+++++|+..|......
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~--------------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD--------------YTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455566677777888888888888888887777766 6677888888888888888888877665
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
++. |+........++...|+.+.|+..|..+...
T Consensus 101 ~~~-dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 101 LKN-DYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ccC-CCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 543 6666777788888888888888887777663
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00046 Score=62.60 Aligned_cols=100 Identities=14% Similarity=-0.007 Sum_probs=81.8
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
.+..-+..+.+.|++++|+..|+.+.. |.+ +.++..++.++...|++++|...|++++..+|+++..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~-------- 216 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA-------- 216 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--------
Confidence 444444444678999999999999987 555 3688999999999999999999999999998875432
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
+.++..++..+...|+.++|...|+.+++..|.
T Consensus 217 ---~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 217 ---ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 116677788899999999999999999986554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=65.63 Aligned_cols=134 Identities=9% Similarity=-0.001 Sum_probs=86.7
Q ss_pred CCCCccHHHHHHH--HHccC---ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC--------C
Q 047659 61 CVSSPNIAQLIHV--LLQSD---MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG--------K 127 (619)
Q Consensus 61 ~~~~~~~~~l~~~--~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~ 127 (619)
+.++.+|....+. +...+ ..+.|+.+|+++++.+|+... +|..+..++.... +
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~--------------a~A~la~~~~~~~~~~~~~~~~ 399 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY--------------AQAEKALADIVRHSQQPLDEKQ 399 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHHHhcCCccHHH
Confidence 5666777655444 44433 477999999999999998765 3444433333221 2
Q ss_pred hhhHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 128 IDESVEIFAYMSDMG-IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 128 ~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
...+.+..+...... ...++..+..+.......|++++|...+++++..+++. |..+.+.+...|+.++|.+.++++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234444444443321 22355667766666667788888888888888877744 777777777788888888888777
Q ss_pred HHCC
Q 047659 205 IQRG 208 (619)
Q Consensus 205 ~~~~ 208 (619)
...+
T Consensus 480 ~~L~ 483 (517)
T PRK10153 480 FNLR 483 (517)
T ss_pred HhcC
Confidence 7663
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=51.57 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCc
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN-SVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~ 178 (619)
.|..++..+...|++++|+..|++.++.++. ++..+..+..++.+.| ++++|++.+++.++.+|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 7788888899999999999999999887655 7788888888998888 68899998888877654
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=49.66 Aligned_cols=76 Identities=20% Similarity=0.400 Sum_probs=44.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047659 325 MDAYVGIGDVGRAVQTYDRMLNGGF-LPNVISYSILIKGLCQQG--------RLVEACGLFGQVLIRRLEPSLLTYSSLI 395 (619)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 395 (619)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+++...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444666666666666666666 566666666666555432 2334566666777666777777777766
Q ss_pred HHHHh
Q 047659 396 DGFCK 400 (619)
Q Consensus 396 ~~~~~ 400 (619)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 65543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0013 Score=60.71 Aligned_cols=269 Identities=16% Similarity=0.117 Sum_probs=157.4
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHH-------HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQL-------IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
++..=...+.+.|++..-..+|+.+.+ --.+.+..+ +.+|.-.+++++|.++...-+. ..+.+-.
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~q-vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt-------lar~lgd 90 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQ-VGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT-------LARLLGD 90 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHH-hcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH-------HHHHhcc
Confidence 444455678999999999999999986 333344444 4444455566666654332221 1122222
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh----CCCC-CCHHhHHHHHHHHHhcCCh------------------
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD----MGIY-LSPDLVQRLMSCLVDSNSV------------------ 163 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~------------------ 163 (619)
.+ +...+...|...+--.|.+++|+.+..+-+. .|-. ....++..+..+|...|+.
T Consensus 91 kl-GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 91 KL-GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred hh-ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 22 1222566777788888999999877665432 2211 1345677788888766542
Q ss_pred --hHHHHHHHHHhhC----Cc-----cchHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcC
Q 047659 164 --GQYYKLCRAMRGK----GF-----CVYEFLMNGLLRKGVIENAFHMHRQVIQR----GF-VPNIVTCNKILKRLCING 227 (619)
Q Consensus 164 --~~A~~~~~~~~~~----~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~ 227 (619)
+.|.+.|..-++. +. -.|..+...|.-.|+++.|+..++.-+.. |- ..-...+..+..++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 2234444332221 11 11555555556677888888776553332 21 122345666777788888
Q ss_pred CcchHHHHHHHHHh----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcC
Q 047659 228 QIGNASSLFDVLLL----VGP-KPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM-----DLVPDLIIYSILIDGLFKAG 297 (619)
Q Consensus 228 ~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~ 297 (619)
+++.|.+.|+.... .|- .....+..+|...|.-..++++|+..+..-... +..-....+-+|..++...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 88888888776442 221 123445566777777777778887776653321 11124456667777777788
Q ss_pred CHHHHHHHHHHHHH
Q 047659 298 RLKEGNELLLTALD 311 (619)
Q Consensus 298 ~~~~a~~~~~~~~~ 311 (619)
..++|+.+.+.-++
T Consensus 330 ~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 330 EHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHH
Confidence 88887777666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.062 Score=49.87 Aligned_cols=285 Identities=18% Similarity=0.150 Sum_probs=170.7
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHhhCCccc----hHHHHHHHHhcCCHHHH
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL--VDSNSVGQYYKLCRAMRGKGFCV----YEFLMNGLLRKGVIENA 197 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A 197 (619)
-.|+-..|.++-.+..+. +..|...+..++.+- .-.|+++.|.+-|+.|... |++ ...+.----+.|..+.|
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHH
Confidence 457777888777766533 333444444444433 4578888888888888753 322 33333334467888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC-CCCChh--hHHHHHHHHH---hcCCHHHHHHHH
Q 047659 198 FHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG-PKPNVV--TFSTLINAFC---KEAKLEKAFQLY 271 (619)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~ 271 (619)
.+.-+..-..- +.-.-.+...+...+..|+++.|+++.+.-+... +.++.. .-..|+.+-. -.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88888777663 2334466778888888888888888887765432 233332 1222332211 123455666555
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CC
Q 047659 272 NLMMEMDLVPDLI-IYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG-GF 349 (619)
Q Consensus 272 ~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~ 349 (619)
.+..+ +.||.. .-....+++.+.|+..++-.+++.+-+....|+. + .+..+.+.|+.. ..-++...+. .+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta--~dRlkRa~~L~sl 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTA--LDRLKRAKKLESL 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcH--HHHHHHHHHHHhc
Confidence 55444 345532 2233456677888888888888888887555543 2 233345666532 2222222110 12
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCC
Q 047659 350 LP-NVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCK-SGKLRDGFSLYDNMIKRGLKP 421 (619)
Q Consensus 350 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~ 421 (619)
+| +..+.-.+..+....|++..|..--+...+. .|....|-.+.+.-.. .|+-.++...+.+..+.--.|
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 23 4556666777777888888887776666554 6677777666665443 488888888888877653333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.096 Score=52.40 Aligned_cols=257 Identities=14% Similarity=0.046 Sum_probs=137.9
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh-HHHHHHhhcCCCcccHHHHHHHHHHc
Q 047659 47 NPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN-FFRLFRDSLGDFGCDYSFLIENYVRI 125 (619)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (619)
..++|.++.+ +.|.++.|..++...++.-.++.|+..|-+.-.-.+-... .++.+.+.. ... +..-.--
T Consensus 678 gledA~qfiE---dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~-----~q~--aei~~~~ 747 (1189)
T KOG2041|consen 678 GLEDAIQFIE---DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKE-----QQR--AEISAFY 747 (1189)
T ss_pred chHHHHHHHh---cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHH-----HHh--HhHhhhh
Confidence 4556666544 3678899999999888888888888888776543332111 111111110 111 1122234
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchHHHHHHHHhcCCHHHHHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYEFLMNGLLRKGVIENAFHM 200 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~ 200 (619)
|++++|.++|-.+..++ ..+..+.+-|++-+..++++.--.... +.++.+...+.....++.|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887774432 234555566676666666554222211 2377777777777777777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047659 201 HRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV 280 (619)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 280 (619)
+..-... ...+.++.+..++++-+.+...+ +.+....-.+...+...|--++|.+.|-+...
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---- 880 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL---- 880 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----
Confidence 7544221 12445555555555544444433 23444555666666677766666666533221
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 281 PDLIIYSILIDGLFKAGRLKEGNELLLTALDRGL-----------KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 281 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
| ...+..|...++|.+|.++-+...-..+ -.+..+ ..-|..+.+.|.+-.|-+++.+|.+
T Consensus 881 p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 881 P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhH
Confidence 1 1234455556666666555433211000 001111 1124456667776666666666654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0001 Score=41.87 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047659 560 IYNVLLNMLIKECNLDAALKLFGQLTDRG 588 (619)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 588 (619)
+|+.++++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666665544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00062 Score=63.07 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=53.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH-cCChhhHHHHHHHHHhCCCCC
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR-IGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~ 145 (619)
|+.+.+...+.+..+.|+.+|.++......+++ +|...+..-.. .++.+.|..+|+...+.- ..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~--------------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~ 68 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH--------------VYVAYALMEYYCNKDPKRARKIFERGLKKF-PS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH--------------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH--------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CC
Confidence 444445555555555555555555433222232 33333333222 334444555555555442 22
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--c----chHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--C----VYEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
++..|..-+..+...++.+.|+.+|++.+..-+ . .|...+..-.+.|+.+...++..++.+
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555544322 1 144444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.016 Score=50.49 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
-+.++..+.-.|.+.-....+.++++..++.++.....+++.-.+.|+.+.|...|++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33444444445555555555555555444444555555555555555555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00014 Score=41.24 Aligned_cols=29 Identities=31% Similarity=0.724 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEMD 278 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 278 (619)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.024 Score=52.95 Aligned_cols=239 Identities=12% Similarity=-0.025 Sum_probs=155.7
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC-
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD- 110 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~- 110 (619)
....-...+..-|++++|+--.++... +..+.........+...++..+|...++..-.. ...+.+..+....+.
T Consensus 85 yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~--~~anal~~~~~~~~s~ 162 (486)
T KOG0550|consen 85 YYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAY--KAANALPTLEKLAPSH 162 (486)
T ss_pred hhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhh--HHhhhhhhhhcccccc
Confidence 344445556667888888888877766 777777788888888888888888887732211 112222111111111
Q ss_pred --Cc--c-cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc-----
Q 047659 111 --FG--C-DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV----- 180 (619)
Q Consensus 111 --~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----- 180 (619)
.+ . .-..-+.++.-.|+.++|.+.--.+++.+.. +......-..++--.++.+.|+..|++.+..+|+-
T Consensus 163 s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~ 241 (486)
T KOG0550|consen 163 SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS 241 (486)
T ss_pred cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh
Confidence 11 0 2223355677789999999999999887544 66666666666677889999999999999999832
Q ss_pred ----------hHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC
Q 047659 181 ----------YEFLMNGLLRKGVIENAFHMHRQVIQRG---FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN 247 (619)
Q Consensus 181 ----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 247 (619)
+..-..-..+.|++..|.+.+.+.+..+ ..++...|.....+..+.|+..+|+.--+..... .+.
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~s 319 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSS 319 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHH
Confidence 1222233446788888888888887763 3444555666666777788888888887777642 211
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 248 -VVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 248 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
...|..-..++...++|++|.+-|+...+.
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122333334555667788888887777664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00061 Score=48.35 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=43.4
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..++.+.+++++|.+.+++++..+|.++. .+...+.++.+.|++++|.+.|+..++.++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE--------------LWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch--------------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 35667777777777777777777766555 6677777777777777777777777775543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.002 Score=56.86 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=81.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC-
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL- 145 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 145 (619)
....+.-+.+.|++..|...|...++.+|+..- .+-++.+|++++..+|++++|...|..+.+..++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-----------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-----------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-----------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 455666677888899999999999998876432 11278899999999999999999999888764442
Q ss_pred -CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc
Q 047659 146 -SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV 180 (619)
Q Consensus 146 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (619)
-+.++..+..+..+.|+.++|...|+.+.++.|++
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 46788888888888999999999999988888843
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0098 Score=60.00 Aligned_cols=153 Identities=10% Similarity=-0.044 Sum_probs=104.5
Q ss_pred CCCCCHhhHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhc--------CCHHHHHHHHHH
Q 047659 448 TLIPNLFIFNTLMDGCCRLK-----RATDTVKLFMLMGMYNIKPD-VITHTVLIRGIASQ--------GSLSSAILLFFQ 513 (619)
Q Consensus 448 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 513 (619)
..+.+...|...+.+..... +...|..+|++..+. .|+ ...|..+..++... ++...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34457778888887765432 366889999988876 354 34455444433322 123344444444
Q ss_pred HHHC-CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 514 MLKR-GLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 514 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
.... ....+...|..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 3332 233455677777777777899999999999999964 6888999999999999999999999999987 6777
Q ss_pred HHHHHHHHHHHhhc
Q 047659 593 IITYNTIICGYCSL 606 (619)
Q Consensus 593 ~~~~~~ll~~~~~~ 606 (619)
..||...=+.-..+
T Consensus 486 ~pt~~~~~~~~f~~ 499 (517)
T PRK10153 486 ENTLYWIENLVFQT 499 (517)
T ss_pred CchHHHHHhccccc
Confidence 77765544443333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.003 Score=58.78 Aligned_cols=135 Identities=10% Similarity=-0.033 Sum_probs=92.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCC----chhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGK----TYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.-++.+.+.|++..|...|++++..... +.+....... ---..+..|+.+|.+.+++..|+...+..+..++.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~---~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEA---LKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHH---HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 4567888999999999999998875331 1111000000 00016788888888888888888888888887644
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHH-HHHHHHHHHHHC
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIE-NAFHMHRQVIQR 207 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~A~~~~~~~~~~ 207 (619)
|+.++..-..+|+..|+++.|+..|+++++..|+. -..++.+.-+..... ...++|..|...
T Consensus 290 -N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 290 -NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred -chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888888888888888888888888888888822 555555554444443 335566666543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.027 Score=55.52 Aligned_cols=228 Identities=13% Similarity=0.019 Sum_probs=118.3
Q ss_pred HHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHH
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYS 116 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (619)
.-+..+..+|.+++|.+.--- --....|..++...+..=.++-|++.|.+.... -|.
T Consensus 561 ~~m~q~Ieag~f~ea~~iacl---gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--------------------~~L 617 (1081)
T KOG1538|consen 561 APMYQYIERGLFKEAYQIACL---GVTDTDWRELAMEALEALDFETARKAYIRVRDL--------------------RYL 617 (1081)
T ss_pred ccchhhhhccchhhhhccccc---ceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--------------------HHH
Confidence 335566778888887664321 234566778877777777777777777766442 222
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHH
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIEN 196 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (619)
+-+.-++++.+.|..|+.. .++..++-+|.+.+|-++|.+. |.-.+
T Consensus 618 -------------~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~------------------G~enR 663 (1081)
T KOG1538|consen 618 -------------ELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRS------------------GHENR 663 (1081)
T ss_pred -------------HHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHc------------------Cchhh
Confidence 3334466677776656554 3456666778888877776553 33344
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH--------
Q 047659 197 AFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF-------- 268 (619)
Q Consensus 197 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-------- 268 (619)
|+++|..+.-.+ ...-+...|..++-..+..+-.+- ..+..--.+....+...|+.++|.
T Consensus 664 AlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW 731 (1081)
T KOG1538|consen 664 ALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGW 731 (1081)
T ss_pred HHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccH
Confidence 444443332110 111122222222222221111000 000000011122223333333333
Q ss_pred -----HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 269 -----QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 269 -----~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
++-+++.. .+..+...+...+.+...+..|-++|..|-+. ..++......++|++|..+-+.
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 33222221 23445555555566667777788888777532 3566777788888888888777
Q ss_pred HHh
Q 047659 344 MLN 346 (619)
Q Consensus 344 ~~~ 346 (619)
..+
T Consensus 799 hPe 801 (1081)
T KOG1538|consen 799 HPE 801 (1081)
T ss_pred Ccc
Confidence 665
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.13 Score=48.86 Aligned_cols=454 Identities=12% Similarity=0.126 Sum_probs=213.5
Q ss_pred HHHccCCchhHHHHHHHhhc--CCCCccH-----HH-HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 41 NLIKTNNPTPAIQFFKWTHN--CVSSPNI-----AQ-LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~-----~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
.+.+++++.+|...|..+-+ ..++..+ .+ +++++ -.++.+.-...+...-+..|..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~~~~s--------------- 78 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQFGKS--------------- 78 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHhcCCc---------------
Confidence 35678999999999998886 2222222 22 22333 3445555555555554444422
Q ss_pred ccHHHHHH--HHHHcCChhhHHHHHHHHHhC--CCCC------------CHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 113 CDYSFLIE--NYVRIGKIDESVEIFAYMSDM--GIYL------------SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 113 ~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
.|..+.. .+-+.+.+..|++.+...... +..| +...-+..+.++.+.|++.+++.+++++...
T Consensus 79 -~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 79 -AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred -hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3444433 355788999999988877654 2221 1111133445566777777777766665432
Q ss_pred C------c--cchHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Q 047659 177 G------F--CVYEFLMNGLLRKGVIENAFHMHRQVIQR---GFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPK 245 (619)
Q Consensus 177 ~------~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 245 (619)
- . +.|+.++-.+.+. .|-++.+. .+-|+ |--++-.|.+. ...++.-.-...-
T Consensus 158 llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~ 220 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFI 220 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhC
Confidence 1 1 2244433333221 12222111 11111 22222222221 0001100000122
Q ss_pred CChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCH
Q 047659 246 PNVVTFSTLINAFCKEA--KLEKAFQLYNLMMEMDLVPDLI-IYSILIDGLFKAGRLKEGNELLLTALDRGLK----LDV 318 (619)
Q Consensus 246 ~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 318 (619)
|.......++....-.. ...--.++++.-...-+.|+.. +...+...+.. +.+++..+.+.+....+. -=.
T Consensus 221 peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li 298 (549)
T PF07079_consen 221 PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELI 298 (549)
T ss_pred cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333443332211 1222233333334444555533 23333333333 455555555544433211 124
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-------HHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 047659 319 VVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILI-------KGLCQ----QGRLVEACGLFGQVLIRRLEPS 387 (619)
Q Consensus 319 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-------~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 387 (619)
.+|..++....+.++...|.+.+.-+... .|+...-..++ +..+. .-+...-+.+++......+...
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 56777788888888888888888777654 34433222221 11111 1112233444444443322211
Q ss_pred HHHHHHHH---HHHHhcCC-hHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 047659 388 LLTYSSLI---DGFCKSGK-LRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGC 463 (619)
Q Consensus 388 ~~~~~~ll---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (619)
.....++ .-+-+.|. -++|+.+++.+.+-. .-|..+-+.+. .+.+ ..|...+
T Consensus 377 -QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~------------~fvK-------q~Y~qaL--- 432 (549)
T PF07079_consen 377 -QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVF------------LFVK-------QAYKQAL--- 432 (549)
T ss_pred -HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHH------------HHHH-------HHHHHHH---
Confidence 1111122 12223343 667777777766541 11211111110 0000 0111111
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCH----hhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 047659 464 CRLKRATDTVKLFMLMGMYNIKPDV----ITHTVLIRG--IASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK 537 (619)
Q Consensus 464 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 537 (619)
......+-..+-+-+.+.|++|-. ..-|.+.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-+.....
T Consensus 433 -s~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 433 -SMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENK 509 (549)
T ss_pred -hhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHh
Confidence 123344444444555666766533 233444443 3457888888766655553 5788888888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 047659 538 NISVGLHMFKLMERNGVAPDIAIYNVL 564 (619)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~~~~~~~~~l 564 (619)
++++|..++..+ +|+..+++.=
T Consensus 510 ~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 510 RYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred hHHHHHHHHHhC-----CCchhhHHHH
Confidence 899998888765 4566655543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.041 Score=46.63 Aligned_cols=186 Identities=15% Similarity=0.074 Sum_probs=122.3
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV 150 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 150 (619)
+..|-..|-++-|+.-|.+.+...|+-++ +|+.|+--+...|+++.|.+.|+...+.+|.-+-...
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~--------------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPE--------------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHH--------------HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 34555667788888888888888888777 8999999999999999999999999998766444444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNGLL-RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQ 228 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 228 (619)
+.-+. +---|++..|.+-+...-..+| |+|..+--... ..-++.+|..-+.+--+ ..|..-|...|-.+.- |+
T Consensus 138 NRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gk 212 (297)
T COG4785 138 NRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GK 212 (297)
T ss_pred cccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hh
Confidence 44333 3367899999999998888888 77666554444 34566666654433222 2355555544433321 22
Q ss_pred cchHHHHHHHHHhCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 229 IGNASSLFDVLLLVGPKPN-------VVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
.. ...+++.+... ...+ ..||--+...+...|+.++|..+|+.....
T Consensus 213 iS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 213 IS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 21 12334444322 1111 235666777777788888888888877664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.21 Score=50.19 Aligned_cols=204 Identities=15% Similarity=0.046 Sum_probs=113.2
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHH----------HHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEF----------LMNGLLRKGVIENAFHMHRQVIQRGFVPN 212 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 212 (619)
.|.+..|..++..-...-.++-|...|-+...-.. ..... -...-.--|++++|.+++-++-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 46788888888776666666777666655432211 00111 1112223467777777776665442
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047659 213 IVTCNKILKRLCINGQIGNASSLFDVLLLV-GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILID 291 (619)
Q Consensus 213 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 291 (619)
..+..+.+.|++-...+++..--.. +-..-...|+.+...++....|++|.+.|..-.. -...+.
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~e 830 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIE 830 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHH
Confidence 3445555666665555554332100 0001134577777777777777777777755432 123455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047659 292 GLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVE 371 (619)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 371 (619)
++.+..++++.+.+.+.+ +-+....-.+..++...|.-++|.+.|-+-.. | ..-+..|...++|.+
T Consensus 831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHH
Confidence 555555555555444433 23555666777778888887777776644322 1 123456666777777
Q ss_pred HHHHHHHH
Q 047659 372 ACGLFGQV 379 (619)
Q Consensus 372 a~~~~~~~ 379 (619)
|.++-+..
T Consensus 897 avelaq~~ 904 (1189)
T KOG2041|consen 897 AVELAQRF 904 (1189)
T ss_pred HHHHHHhc
Confidence 77665443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.006 Score=51.87 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=68.0
Q ss_pred CCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047659 245 KPNVVTFSTLINAFCK-----EAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVV 319 (619)
Q Consensus 245 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 319 (619)
..+-.+|..++..+.+ .|..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 3466667777776654 46677777777888888888888888888877654 2211 11 1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047659 320 VFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRL 369 (619)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 369 (619)
.+-++..- --.+-+-|++++++|...|+-||..++..++..+++.+..
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 11111111 1234566778888888888888888888888887766643
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.14 Score=47.46 Aligned_cols=127 Identities=12% Similarity=0.085 Sum_probs=75.5
Q ss_pred HHccCChhHHHHHHHHHHHhc-CCchhHHHHHHhhcCCCcccHHHHHHHHHHcC-ChhhHHHHHHHHHhC--------CC
Q 047659 74 LLQSDMRDVASHVFDKMVIQF-GKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG-KIDESVEIFAYMSDM--------GI 143 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~ 143 (619)
..++|+++.|..++.++-... ..+++....+.. .+...+......+ +++.|..++++..+. ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~-------~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELAR-------VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 457888999999988887754 333333222333 5666677777777 999998888877543 11
Q ss_pred CCCH-----HhHHHHHHHHHhcCChh---HHHHHHHHHhhCCcc---chHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 144 YLSP-----DLVQRLMSCLVDSNSVG---QYYKLCRAMRGKGFC---VYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 144 ~~~~-----~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
.|+. .++..++.+|...+.++ +|..+++.+....++ ++..-++.+.+.++.+.+.+.+..|+..
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2222 23445556666555543 344555555444442 2445555555566666666666666655
|
It is also involved in sporulation []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.049 Score=47.92 Aligned_cols=187 Identities=10% Similarity=-0.036 Sum_probs=118.6
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
.+..+..-+...++.|++++|...|+.+..+.|.++- ..++...++.++-+.+++++|+..+++.....
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~-----------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY-----------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-----------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3455666777788999999999999999998886543 23377788889999999999999999998876
Q ss_pred CCCCHHhHHHHHHHHHhc-------CCh---hHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047659 143 IYLSPDLVQRLMSCLVDS-------NSV---GQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIENAFHMHRQVIQRGFVP 211 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~-------~~~---~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 211 (619)
|......|-.-+.+++.- .+. ..|+.-|+.++.+-|++ |..-++.-. ..+...+.
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i---------~~~~d~LA----- 167 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI---------VKLNDALA----- 167 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH---------HHHHHHHH-----
Confidence 654333444444444311 111 34666667777777754 433222110 11111110
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 212 NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVV---TFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 212 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
.--..+.+.|.+.|.+..|..-++.+.+. .+-... .+-.+..+|...|-.++|.+.-+-+...
T Consensus 168 --~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 168 --GHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred --HHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 01123556777888888888888888775 222222 3445567777888888877776666544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.004 Score=49.45 Aligned_cols=85 Identities=13% Similarity=0.025 Sum_probs=61.1
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.++..+..-+...++.|++++|.+.|+.+..+.|...- ...+...|+.+|.+.|++++|+..+++.++.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-----------a~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY-----------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-----------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455666777788899999999999999888775432 2237788888999999999999999999887
Q ss_pred CCCCCHHhHHHHHHHH
Q 047659 142 GIYLSPDLVQRLMSCL 157 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~ 157 (619)
+|...-..|-....++
T Consensus 77 hP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 77 HPTHPNVDYAYYMRGL 92 (142)
T ss_pred CCCCCCccHHHHHHHH
Confidence 7663333333333333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.001 Score=47.22 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=48.3
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
...|.+.++++.|++++++++..+|. ++..|...+.++.+.|++++|.+.|+++.+.+|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677888888888888888887655 777888888888888888888888888887777
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.012 Score=50.17 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=56.8
Q ss_pred CHhhHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 047659 452 NLFIFNTLMDGCCRL-----KRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITY 526 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 526 (619)
+..+|..+++.|.+. |..+=....++.|.+.|+..|..+|+.|++.+=+ |.+ .|... +
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~-f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNF-F 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccH-H
Confidence 555666666666532 3444444555566666666666666666655432 111 11100 0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 047659 527 SAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECN 573 (619)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 573 (619)
.++.-- .-.+-+-|++++++|..+|+.||..++..++..+.+.+.
T Consensus 109 Q~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 011000 112345677888888888888888888888888766654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.037 Score=49.59 Aligned_cols=122 Identities=13% Similarity=0.037 Sum_probs=57.7
Q ss_pred HHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH
Q 047659 40 ANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF 117 (619)
Q Consensus 40 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (619)
..+...|++.+|...|+.+.. +.+..+...++..+...|+.+.|..++..++.......-. ....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~-------------~l~a 208 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH-------------GLQA 208 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH-------------HHHH
Confidence 344555666666666665555 4455555556666666666666666555554432221100 1111
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
-+..+.+.....+...+-++.-. +|. |...-..+...+...|+.+.|.+.+-.+.++
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aa-dPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAA-DPD-DVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHh-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22333333444433333333322 122 4555555555555555555555555554443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.007 Score=53.58 Aligned_cols=100 Identities=16% Similarity=0.053 Sum_probs=84.7
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
.+......+.+.|++.+|.+.|..... ...+.++.-|+..+..+|++++|...|..+++..|+++.+
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA-------- 214 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA-------- 214 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC--------
Confidence 366777777889999999999998887 4555677789999999999999999999999998876542
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
+.....|+....+.|+.++|...|+.+++.-|.
T Consensus 215 ---pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 215 ---PDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred ---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 127788899999999999999999999987554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.068 Score=47.96 Aligned_cols=153 Identities=13% Similarity=0.066 Sum_probs=94.1
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
.+.-..-+......|++.+|..+|..+....+.+.+ +-..++.+|...|+++.|..++..+.....
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~--------------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSE--------------AKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccch--------------HHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 333444555667888999999999999888777755 677888889999999999998888754322
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHH
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRG-FVPNIVTCNKI 219 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l 219 (619)
.........-+..+.+.....+...+-.++. .+| |. -..+...+...|+.+.|.+.+-.+++++ -..|...-..+
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 2122222233444444444444444433333 334 33 6666677777777777777666665552 13344455566
Q ss_pred HHHHHhcCCcch
Q 047659 220 LKRLCINGQIGN 231 (619)
Q Consensus 220 l~~~~~~~~~~~ 231 (619)
+..+.-.|.-+.
T Consensus 279 le~f~~~g~~Dp 290 (304)
T COG3118 279 LELFEAFGPADP 290 (304)
T ss_pred HHHHHhcCCCCH
Confidence 666555554433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.016 Score=47.79 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+...++..+...|++++|..+++.+...+|. +...+..++.+|...|+...|++.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4556666677777777777777777776544 66777777777777777777777777654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.38 Score=47.77 Aligned_cols=421 Identities=11% Similarity=0.064 Sum_probs=220.3
Q ss_pred HHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhh
Q 047659 52 IQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDE 130 (619)
Q Consensus 52 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 130 (619)
....+.... ..+...|..++.--......+.++..+..++...|-... .|...+..=.+.|..+.
T Consensus 32 ~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~g--------------yW~kfA~~E~klg~~~~ 97 (577)
T KOG1258|consen 32 LDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYG--------------YWKKFADYEYKLGNAEN 97 (577)
T ss_pred hhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHH--------------HHHHHHHHHHHhhhHHH
Confidence 333443333 455566666655554555557778888888888776554 55666666677888899
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhHHHHHHHHHhhCCc-----cc-hHHHHHHHHhcCCHHHHHHHHHH
Q 047659 131 SVEIFAYMSDMGIYLSPDLVQRLMSCLV-DSNSVGQYYKLCRAMRGKGF-----CV-YEFLMNGLLRKGVIENAFHMHRQ 203 (619)
Q Consensus 131 A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~-----~~-~~~l~~~~~~~~~~~~A~~~~~~ 203 (619)
+..+|++.+.. ++.+...|......+. ..|+.+.....|+++..... +. |...+..-...+++.....+++.
T Consensus 98 s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeR 176 (577)
T KOG1258|consen 98 SVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYER 176 (577)
T ss_pred HHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999988875 4457777766665554 46777778888888766443 23 77777777788888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHh---c------CCcchHHHHHHHHHhC---C-CCCChhhHHHHHHHHHh-cCCHHHHHH
Q 047659 204 VIQRGFVPNIVTCNKILKRLCI---N------GQIGNASSLFDVLLLV---G-PKPNVVTFSTLINAFCK-EAKLEKAFQ 269 (619)
Q Consensus 204 ~~~~~~~~~~~~~~~ll~~~~~---~------~~~~~A~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~-~~~~~~a~~ 269 (619)
+++. ...-++..-..|.+ . ...+++.++-...... + ..+....+..-+.-... .+..+++..
T Consensus 177 ilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~ 252 (577)
T KOG1258|consen 177 ILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKT 252 (577)
T ss_pred HHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHH
Confidence 8865 22233333322221 1 1111221111111100 0 00000000000000000 000111111
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 047659 270 LYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRG-------LKLDVVVFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
+..+... .--..+-...........++.-...- ..++..+|...+..-...|+++.+.-+|+
T Consensus 253 ~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~e 321 (577)
T KOG1258|consen 253 ILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFE 321 (577)
T ss_pred HHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHH
Confidence 1100000 00001111111222222233322221 12356678888888889999999999888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047659 343 RMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 422 (619)
...-. +..-...|-..+.-....|+.+.|..++....+-..+..+.+--.-...+-..|+++.|..+++...+.- |+
T Consensus 322 rcli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg 398 (577)
T KOG1258|consen 322 RCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PG 398 (577)
T ss_pred HHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cc
Confidence 87642 1122334555555555568888888877766655433233222222223345689999999999888762 44
Q ss_pred HhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH---HHHHHHhhCCCCCCHhhHHHHHHH--
Q 047659 423 AVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTV---KLFMLMGMYNIKPDVITHTVLIRG-- 497 (619)
Q Consensus 423 ~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-- 497 (619)
... .-..-+....+.|+.+.+. .++...... .-+..+.+.+.--
T Consensus 399 ~v~-----------------------------~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 399 LVE-----------------------------VVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFA 447 (577)
T ss_pred hhh-----------------------------hHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHH
Confidence 221 0111122233455555554 222222221 1222222222222
Q ss_pred ---HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 047659 498 ---IASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK 537 (619)
Q Consensus 498 ---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 537 (619)
+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23357888888888888874 4667777888877776555
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0012 Score=40.95 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=33.1
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
+.++..++..+.+.|++++|++.|+++++.+|++++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 457889999999999999999999999999999887
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0055 Score=58.57 Aligned_cols=69 Identities=7% Similarity=-0.113 Sum_probs=60.7
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH-HHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF-FRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
|.++.++..++.++...|++++|...|++++..+|+..++ . +|+.++.+|...|++++|+..+++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~------------A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQA------------AYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHH------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777888999999999999999999999999998886541 1 58999999999999999999999998
Q ss_pred hC
Q 047659 140 DM 141 (619)
Q Consensus 140 ~~ 141 (619)
+.
T Consensus 140 el 141 (453)
T PLN03098 140 RD 141 (453)
T ss_pred Hh
Confidence 75
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.53 Score=47.97 Aligned_cols=337 Identities=13% Similarity=0.084 Sum_probs=173.5
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCC--CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCV--SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
....++..+...+.+..|++..+++-.|. ..+.+..-+....++.+.. -...++.+.++... . ..+
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~----------~-~~~ 506 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSA----------K-LTP 506 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcc----------c-CCC
Confidence 34567888889999999999999988521 1455555555555543111 12222333222111 0 012
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC----CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY----LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNG 187 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 187 (619)
...|..++.-....|+++-|..+++.=...+.. .+-.-....+.-..+.|+.+....++..+...- .....
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~-----~~s~l 581 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL-----NRSSL 581 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-----HHHHH
Confidence 337888999899999999999887644222111 000011112222233344443333333322211 01111
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHH--HHHhC-CCCCChhhHHHHHHHHHhcCCH
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFD--VLLLV-GPKPNVVTFSTLINAFCKEAKL 264 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 264 (619)
+....+...|..++.+..+.. +.. .+-+.|- .++-.++...|. ..... .+.+-.........++.+....
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~ 654 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEK 654 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhh---chh---hhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhh
Confidence 122233444555555554431 111 1111121 222222222111 10000 0111122223333344433321
Q ss_pred ----------HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 047659 265 ----------EKAFQLYNLMMEM-DLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGD 333 (619)
Q Consensus 265 ----------~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (619)
.+-+++.+.+..+ |..-...+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..++
T Consensus 655 s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 655 SFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhh
Confidence 1222223333222 333334455566666778888888888876665 4588888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047659 334 VGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 413 (619)
+++-.++-.... ++.-|.-+..+|.+.|+.++|.+++...... .-...+|.+.|++.+|.++--+
T Consensus 731 weeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 731 WEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 887666555443 3555777888899999999998888654321 1456788888888888766543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.031 Score=53.72 Aligned_cols=117 Identities=8% Similarity=-0.104 Sum_probs=81.2
Q ss_pred CchhHHHHHHHhh---c--CCCCccHHHHHHHHHc---------cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 47 NPTPAIQFFKWTH---N--CVSSPNIAQLIHVLLQ---------SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 47 ~~~~A~~~~~~~~---~--~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
..+.|+.+|..+. + |....++..++..+.. .....+|.++-+++++.++.++-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~------------- 339 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK------------- 339 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH-------------
Confidence 3457888898888 4 6667777776655532 23445667777777777766554
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+...++.+..-.|+++.|...|++....+|. ...+|......+.-.|+.++|.+.+++..+.+|
T Consensus 340 -a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 340 -ILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred -HHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 5566666667777788888888888776544 556666666666777888888888888777777
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.22 Score=43.70 Aligned_cols=130 Identities=10% Similarity=0.056 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HH
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSIL-----ID 291 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----l~ 291 (619)
+.++..+.-.|.+.-...++.+.++..++.++.....+++.-.+.||.+.|...|++..+..-..|..+++.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4444555555566666666666666555555666666666666666666666666655443222222222222 12
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047659 292 GLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG 347 (619)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (619)
.+.-.+++..|...+.++...+.. |+...|.-.-+..-.|+...|.+.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233344555555555555544322 3333332222233345555555555555553
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.39 Score=45.24 Aligned_cols=128 Identities=15% Similarity=0.079 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047659 455 IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF 534 (619)
Q Consensus 455 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 534 (619)
+.+..+.-+...|+...|.++-++.. -|+...|...+.+++..+++++-..+-.. +-.+.-|..++++|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555667778899988888877664 58999999999999999999987765432 224477999999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 047659 535 KGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNS 608 (619)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~ 608 (619)
+.|+..+|..++.++ + + ..-+..|.+.|++.+|.+..-+.. |...+..+...+....+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~~~ 306 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGNND 306 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCCCh
Confidence 999999999988872 2 2 345678899999999987654432 34444444444443333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.033 Score=42.80 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=29.3
Q ss_pred HHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHh
Q 047659 41 NLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (619)
.+...|+.+.|++.|.+.+. |..+.+|+..+..+.-+|+.++|..-++++++.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34445555555555555554 555555555555555555555555555555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.16 Score=49.13 Aligned_cols=142 Identities=14% Similarity=0.067 Sum_probs=98.4
Q ss_pred ChhHHHHHHHHHH---HhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH---------cCChhhHHHHHHHHHhCCCCCC
Q 047659 79 MRDVASHVFDKMV---IQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR---------IGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 79 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
..+.|..+|.+++ ..+|.... .|..+..++.. ..+..+|.++.++..+.++. |
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~--------------a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-D 337 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTE--------------CYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-D 337 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHH--------------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-C
Confidence 4567888999999 55554433 33333333222 23456788888889888765 8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHHHH
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV---TCNKIL 220 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~ll 220 (619)
+.+...+..++.-.++++.|..+|++....+|+. |....-.+.-.|+.++|.+.+++..+.. |... .....+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~ 415 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECV 415 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHH
Confidence 9999999988888888999999999999999943 7777777778899999999999987763 3222 222233
Q ss_pred HHHHhcCCcchHHHHHHH
Q 047659 221 KRLCINGQIGNASSLFDV 238 (619)
Q Consensus 221 ~~~~~~~~~~~A~~~~~~ 238 (619)
+.|+. ...+.|.+++-+
T Consensus 416 ~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 416 DMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HHHcC-CchhhhHHHHhh
Confidence 34433 345666666544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.084 Score=44.82 Aligned_cols=179 Identities=13% Similarity=-0.071 Sum_probs=102.5
Q ss_pred ccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (619)
.-|-.+.|.-=|.+... |..+.+++-++--+...|+++.|.+.|+...+.+|...- ++..-+-+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y--------------a~lNRgi~ 142 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY--------------AHLNRGIA 142 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH--------------HHhcccee
Confidence 34455556656666555 778888888888888999999999999999988876422 22222333
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCChhHHHHHH-HHHhhCCccchHH-HHHHHHhcCCHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPD--LVQRLMSCLVDSNSVGQYYKLC-RAMRGKGFCVYEF-LMNGLLRKGVIENA 197 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~-l~~~~~~~~~~~~A 197 (619)
+---|+++-|.+-|...-+.++. ||. .|..+.. ..-++.+|..-+ ++....+.+-|.. ++..|...=..+.+
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l 218 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETL 218 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCC-ChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHH
Confidence 44457888888777777666544 332 3333332 223455555433 3333332222322 22233322222222
Q ss_pred HHHHHHHHHCCC------CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 047659 198 FHMHRQVIQRGF------VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG 243 (619)
Q Consensus 198 ~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 243 (619)
. +.+....- ..=+++|-.+...+...|+.++|..+|+-....+
T Consensus 219 ~---~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 219 M---ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred H---HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2 22221110 1124567778888888888888888888776543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.027 Score=54.01 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP---DLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
.++.++.+|.+.|++++|+..|++.++.+|. +. .+|+.+..+|...|+.++|++.++++++.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999997655 33 35999999999999999999999998875
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.012 Score=54.99 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=95.2
Q ss_pred HHHHHccCCchhHHHHHHHhhc-----------------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN-----------------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFF 101 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 101 (619)
...+.+.|++..|...|+.+.. ..-...+..++.++.+.+.+..|+..-++.+..+|++.-
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K-- 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK-- 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh--
Confidence 4467889999999999998665 111123356788889999999999999999999988877
Q ss_pred HHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh-HHHHHHHHHhhC
Q 047659 102 RLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG-QYYKLCRAMRGK 176 (619)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~ 176 (619)
+...-++++...|+++.|+..|+.+++..|. |-.+-..++.+-.+...+. ...++|..|...
T Consensus 293 ------------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ------------ALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred ------------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6678889999999999999999999997655 5666666666665554443 447777777543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.012 Score=48.59 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=67.5
Q ss_pred HHccCCchhHHHHHHHhhc-------CC-CCccH----------------HHHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 42 LIKTNNPTPAIQFFKWTHN-------CV-SSPNI----------------AQLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~-------~~-~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
....++++.+.+.++.+.. +. ....| ..++..+...|++++|...+++++..+|.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~ 95 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD 95 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Confidence 3556777777777777666 11 11123 245566778999999999999999999987
Q ss_pred hhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH-----hCCCCCCHHhHH
Q 047659 98 YNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS-----DMGIYLSPDLVQ 151 (619)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~ 151 (619)
.. .|..++.+|.+.|+...|.++|+.+. +.|..|++.+-.
T Consensus 96 E~--------------~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 96 EE--------------AYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HH--------------HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HH--------------HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 76 89999999999999999999999884 457778777643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.02 Score=53.29 Aligned_cols=282 Identities=16% Similarity=0.112 Sum_probs=140.2
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHH--hhC--Cc---cc--hHHHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPD----LVQRLMSCLVDSNSVGQYYKLCRAM--RGK--GF---CV--YEFLM 185 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~--~~~--~~---~~--~~~l~ 185 (619)
..-+++.|+....+.+|+.+++.|.. |.. +|..+..+|.-.+++++|++....= +.+ +. .. ...+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 34578888888888888888887654 433 3455566666666777777654331 111 10 11 34444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047659 186 NGLLRKGVIENAFHMHRQVIQ----RGF-VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK 260 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (619)
..+--.|.+++|.-...+-+. .|- ......+..+..+|...|+--....- .+.|-.++.+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev----------- 167 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEV----------- 167 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHH-----------
Confidence 455555666666544333222 110 11122333344444433321100000 0000000000
Q ss_pred cCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHc
Q 047659 261 EAKLEKAFQLYNLMM----EMDL-VPDLIIYSILIDGLFKAGRLKEGNELLLTAL----DRGLK-LDVVVFSSVMDAYVG 330 (619)
Q Consensus 261 ~~~~~~a~~~~~~m~----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~ll~~~~~ 330 (619)
...++.|.++|.+-. +.|- -.-...|..|-..|.-.|+++.|....+.-. +.|-+ .....+..+.+++.-
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 001233333333221 1110 0112345566666666777777776654432 22211 123355667777777
Q ss_pred CCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHh
Q 047659 331 IGDVGRAVQTYDRMLNG----GF-LPNVISYSILIKGLCQQGRLVEACGLFGQVLIR-----RLEPSLLTYSSLIDGFCK 400 (619)
Q Consensus 331 ~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~ 400 (619)
.|+++.|.+.|+..... |- .....+.-.|...|.-..+++.|+.++..-..- ........+.++..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 78888887777654321 11 122334445666666666777777766543211 112245567778888888
Q ss_pred cCChHHHHHHHHHHHH
Q 047659 401 SGKLRDGFSLYDNMIK 416 (619)
Q Consensus 401 ~~~~~~a~~~~~~~~~ 416 (619)
.|..++|+.+.....+
T Consensus 328 lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLR 343 (639)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8888887776665444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.18 Score=43.81 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=20.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
..-+..+....++++|..-+.++.+....+
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnn 64 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENN 64 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 334456667788888888888877654443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.22 Score=43.27 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
.+......|..+|.++.|-..+++.-+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 556666678888888887777776643
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.079 Score=40.85 Aligned_cols=95 Identities=9% Similarity=-0.073 Sum_probs=74.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH-
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD- 148 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 148 (619)
-+-++...|+++.|++.|.+++..-|.... +|+.-++++.-+|+.++|++=+++.++..-.....
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raS--------------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta 114 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERAS--------------AYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA 114 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchH--------------hhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH
Confidence 345667889999999999999988776655 89999999999999999999999998753222222
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 149 --LVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 149 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++-.-...|...|+.+.|..-|+...+.|.
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 344455667788999999998888877664
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0086 Score=43.02 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
.++..++.++...|++++|+..|++++.......+ ..+....++..++.+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678899999999999999999999874110000 0011122889999999999999999999998864
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.66 Score=44.27 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=80.4
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHhH
Q 047659 450 IPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITH-TVLIRGIASQGSLSSAILLFFQMLKRGLTPD--VITY 526 (619)
Q Consensus 450 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~ 526 (619)
.+++.++++++..++ .|+..-|..+|+.-... -||...| +..+..+...++-+.|..+|+....+ +..+ ...|
T Consensus 430 ~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy 505 (660)
T COG5107 430 GHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIY 505 (660)
T ss_pred CcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHH
Confidence 457778888888776 57888889999854433 3454443 45666777889999999999966653 2223 5678
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 047659 527 SAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLI 569 (619)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 569 (619)
..+|+--..-|+...+..+-++|.+. .|...+......-|.
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 99999888999998888888888773 455555555444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.73 Score=43.45 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047659 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 328 (619)
.+.+..+.-+...|+...|.++-++.+ .|+..-|...+.+++..++|++..++-.. +-++..|..++..|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345556667777888888887766663 36888888888888888888877765432 12456788888888
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 329 VGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQV 379 (619)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (619)
.+.|...+|..+...+. +..-+..|.+.|++.+|.+.-.+.
T Consensus 248 ~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 88888888888776621 245567778888888887765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0064 Score=37.69 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMS 155 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 155 (619)
++..++..|.+.|++++|+++|+++++..|. |+..|..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence 6778889999999999999999999988765 7777776653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.54 Score=44.79 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=56.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc----c---chHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhh
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF----C---VYEFLMNGLLR---KGVIENAFHMHRQVIQRGFVPNIVT 215 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~---~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~ 215 (619)
++.+...++-+|....+++..+++++.+..... + +-...+-++-+ .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 445566677778888999999999998877632 1 13344445556 8899999999888666655788888
Q ss_pred HHHHHHHHH
Q 047659 216 CNKILKRLC 224 (619)
Q Consensus 216 ~~~ll~~~~ 224 (619)
+..+...|-
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 887777664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.087 Score=41.62 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=60.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 047659 487 DVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLN 566 (619)
Q Consensus 487 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 566 (619)
|..++..++.++++.|+++....+++..- |+.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34567777778888888877777776543 32222110 0000 1112335567777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCc
Q 047659 567 MLIKECNLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNS 608 (619)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~ll~~~~~~~~ 608 (619)
+|+..|++..|.++++...+ .+++.+..+|..|+.-+...-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 77777777777777777664 5666667777777665554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.28 Score=46.61 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=71.2
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhcCC------CCccHHHHHHHHHc---cCChhHHHHHHHHHHH-hcCCc
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCV------SSPNIAQLIHVLLQ---SDMRDVASHVFDKMVI-QFGKT 97 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-~~~~~ 97 (619)
..++++.+-.++..|....+++.=+.+++.+...| .......++.++-+ .|+.++|+..+..++. ..+..
T Consensus 137 ~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 137 ELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD 216 (374)
T ss_pred hhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC
Confidence 35788899999999999999999999999988732 22333467777778 8999999999999554 44444
Q ss_pred hhHHHHHHhhcCCCcccHHHHHHHHHH---------cCChhhHHHHHHHHHhC
Q 047659 98 YNFFRLFRDSLGDFGCDYSFLIENYVR---------IGKIDESVEIFAYMSDM 141 (619)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~ 141 (619)
++ ++..+++.|-. ....+.|+..|.+.-+.
T Consensus 217 ~d--------------~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 217 PD--------------TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred hH--------------HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 44 45555544432 12356777777777654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.11 Score=42.37 Aligned_cols=58 Identities=9% Similarity=-0.067 Sum_probs=32.7
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
++...++.++.+++..+++-+.- |..++.-..-+.++.+.|+|.+|..+|+.+....|
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 33334555666666666665554 55555555555566666666666666666554433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.7 Score=45.08 Aligned_cols=46 Identities=7% Similarity=0.164 Sum_probs=25.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 047659 529 IIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAAL 578 (619)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 578 (619)
++..+....+++.++.+.+..-+. ++..|..++..+++.+..+.-.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHH
Confidence 444455555666665555544332 5666666666666666444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.23 Score=49.88 Aligned_cols=145 Identities=10% Similarity=0.006 Sum_probs=88.6
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH----cCCh
Q 047659 53 QFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR----IGKI 128 (619)
Q Consensus 53 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 128 (619)
..|.-+. +.-|+....+.....-.|+-+.+.+.+.+..+..+-... +..+.-. .|...+..++. ..+.
T Consensus 178 G~f~L~l-SlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~-la~L~LL------~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 178 GLFNLVL-SLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSP-LAALVLL------WYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHH-HhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchH-HHHHHHH------HHHHHHHHHcCCcccCCCH
Confidence 3344333 344566667777888999999999999998763222111 1111100 33333333332 4566
Q ss_pred hhHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHhhCCc------cc-hHHHHHHHHhcCCHHHHHHH
Q 047659 129 DESVEIFAYMSDMGIYLSPDLV-QRLMSCLVDSNSVGQYYKLCRAMRGKGF------CV-YEFLMNGLLRKGVIENAFHM 200 (619)
Q Consensus 129 ~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~-~~~l~~~~~~~~~~~~A~~~ 200 (619)
+.|.++++.+.+.- |+...| ..-.+.+...|+.++|++.|+++..... .. +..++-++...+++++|.+.
T Consensus 250 ~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 78888998888764 344443 4456777788899999999887664222 11 55555566666677777776
Q ss_pred HHHHHHC
Q 047659 201 HRQVIQR 207 (619)
Q Consensus 201 ~~~~~~~ 207 (619)
+..+.+.
T Consensus 328 f~~L~~~ 334 (468)
T PF10300_consen 328 FLRLLKE 334 (468)
T ss_pred HHHHHhc
Confidence 6666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.009 Score=42.92 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC----CCC-CC-HHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM----GIY-LS-PDLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
++..++..|...|++++|++.|++.++. +.. |+ ..++..+..++...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7889999999999999999999998743 211 12 34677788888899999999988887653
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.33 Score=47.11 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCc--c---chHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGF--C---VYEFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~---~~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
..+..++.+.|+.++|++.++++.+..| | +...++.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3344444455555555555555544433 1 14445555555555555555555443
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.12 Score=51.13 Aligned_cols=166 Identities=11% Similarity=0.110 Sum_probs=99.5
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHH--HhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 30 LQFNQANAILANLIKTNNPTPAIQFFK--WTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
+++..+.-... .-+|+++++.+..+ .+...-+..-...+++-+-+.|.++.|.++-+.--.
T Consensus 261 ld~~~~~fk~a--v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------------- 323 (443)
T PF04053_consen 261 LDLSELEFKTA--VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH--------------- 323 (443)
T ss_dssp --HHHHHHHHH--HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH---------------
T ss_pred ECHHHHHHHHH--HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH---------------
Confidence 44444433333 34888888777665 222212233355677777788888888877444322
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNG 187 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 187 (619)
--....+.|+++.|.++.+.. +++..|..|.....++|+++-|.+.|.+... +..++-.
T Consensus 324 ----------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lL 382 (443)
T PF04053_consen 324 ----------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLL 382 (443)
T ss_dssp ----------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHH
T ss_pred ----------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHH
Confidence 223456788988888765433 3778899999999999999999988888654 6677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVL 239 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 239 (619)
|...|+.+.-.++.+.....| -++....++...|+.++..+++.+.
T Consensus 383 y~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 383 YSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 888888888777777777665 1444445555567777776666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.12 Score=40.80 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=57.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIH 531 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 531 (619)
|..++.++|-++++.|+.+....+++..= |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34578899999999999999988887552 22211100 0000 0111234566666666666
Q ss_pred HHHccCChHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHH
Q 047659 532 GLFKGKNISVGLHMFKLMER-NGVAPDIAIYNVLLNMLI 569 (619)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 569 (619)
+|+..|++..|.++++...+ .+++.+..+|..|+.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 66666666666666666554 455555666666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.48 Score=43.80 Aligned_cols=229 Identities=10% Similarity=0.037 Sum_probs=136.7
Q ss_pred HHHHHccCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcc
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGC 113 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (619)
...+..+.+.+.|+..-.+.+. .....++.-+..+...+|+++++...--..+.......+. ...-.
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds---~~~~e----- 84 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS---DFLLE----- 84 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-----
Confidence 3445667778888777666554 2223344456677788888887766544433321111110 00000
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC-CCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c------c
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM-GIYL---SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C------V 180 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~------~ 180 (619)
+|..+.+.+-+.-++.+++.+-..-... |..| .......+..++...+.++++++.|+.+.+... | +
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 6778888888888888888877665543 1111 123445577788888899999999998765332 2 2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-CChh-hH-----HHHHHHHHhcCCcchHHHHHHHHHh----CCCCCC
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQR--GFV-PNIV-TC-----NKILKRLCINGQIGNASSLFDVLLL----VGPKPN 247 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-~~~~-~~-----~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~ 247 (619)
+..+...|.+..++++|.-+...+.+. .+. .|.. -| ..+.-++...|++.+|.+.-++..+ .|-.+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 888999999999999988776665443 111 1221 12 2233445567777777777766543 222211
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 248 -VVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 248 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
......+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334455667777777777776666543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.2 Score=41.40 Aligned_cols=163 Identities=10% Similarity=0.072 Sum_probs=101.8
Q ss_pred HccCCchhHHHHHHHhhc---CCCCccHHH-------HHHHHHccC-ChhHHHHHHHHHHHhcCC-------chhHHHHH
Q 047659 43 IKTNNPTPAIQFFKWTHN---CVSSPNIAQ-------LIHVLLQSD-MRDVASHVFDKMVIQFGK-------TYNFFRLF 104 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~---~~~~~~~~~-------l~~~~~~~g-~~~~A~~~~~~~~~~~~~-------~~~~~~~~ 104 (619)
.++|+.+.|..++.++.. ..++..... .+..+...+ +++.|...++++.+.-.. .++. ..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~-~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG-SEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH-HHH
Confidence 468999999999999887 334444444 444456777 999999999999876221 1110 011
Q ss_pred HhhcCCCcccHHHHHHHHHHcCChhh---HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--c
Q 047659 105 RDSLGDFGCDYSFLIENYVRIGKIDE---SVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--C 179 (619)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~ 179 (619)
+- .+...++.+|...+.++. |.++++.+....+. .+..+..-++++.+.++.+.+.+.+.+|+..-. +
T Consensus 83 r~------~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 83 RL------SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred HH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 11 167788889998887765 45555555443332 456666777777778899999999999887654 3
Q ss_pred c-hHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCh
Q 047659 180 V-YEFLMNGLL--RKGVIENAFHMHRQVIQRGFVPNI 213 (619)
Q Consensus 180 ~-~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~ 213 (619)
. +..++..+- .......|...+..++...+.|..
T Consensus 156 ~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 156 SNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred chHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3 555555442 123334455555555444334443
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.36 Score=48.52 Aligned_cols=162 Identities=10% Similarity=-0.001 Sum_probs=111.4
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHH---------HH-H---ccCChhHHHHHHHHHHHhcCCch
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIH---------VL-L---QSDMRDVASHVFDKMVIQFGKTY 98 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~---------~~-~---~~g~~~~A~~~~~~~~~~~~~~~ 98 (619)
|-.+..++.-.--.||-+.+++.+.......+...-....- .+ . .....+.|.++++.+..+.|+..
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~ 267 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA 267 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH
Confidence 33556666666678999999999998876333333322111 11 1 35677889999999999887653
Q ss_pred hHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC---CCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 99 NFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY---LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
- ....-++.+...|++++|++.|++....... .....+..++..+.-..+|++|.+.|..+.+
T Consensus 268 l--------------fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 268 L--------------FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred H--------------HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 2 4445567788899999999999987642111 1233456677778899999999999999998
Q ss_pred CCc-cc---hHHHHHHHHhcCCH-------HHHHHHHHHHHHC
Q 047659 176 KGF-CV---YEFLMNGLLRKGVI-------ENAFHMHRQVIQR 207 (619)
Q Consensus 176 ~~~-~~---~~~l~~~~~~~~~~-------~~A~~~~~~~~~~ 207 (619)
.+. +. ....+.++...|+. ++|.+++.++...
T Consensus 334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 766 22 33344555577777 7777777776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.39 Score=39.37 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH---hH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD---LV 150 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~ 150 (619)
+.+.|..++|...|...-+.+-..+..+ ..........+.|+-..|...|+++-...+.|-+. ..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvL------------A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVL------------ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHH------------HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 4456666666666666665544433322 33344455566677777777777665543333222 11
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGF----CVYEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
..-.-.+...|.++......+.+...+. .....+.-+-.+.|++..|..+|..+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1222234556666655555554433222 1133344444455555555555555444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.34 Score=39.58 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=25.9
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
-.+.++.+++..+++.+.-..|. .+..-..-...+...|++.+|+.+|+.+....+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 33444555555555555443322 222223333444455555555555555544444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.65 Score=46.41 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=36.1
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 212 NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 212 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
+..+...+...+.+...+..|-++|.+|-. ..++++.....++|.+|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 344444455555566777778888877742 23556667777888888877766554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.012 Score=33.84 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=29.4
Q ss_pred HHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHH
Q 047659 87 FDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVE 133 (619)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 133 (619)
|+++++.+|++++ +|..++..|...|++++|++
T Consensus 2 y~kAie~~P~n~~--------------a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE--------------AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH--------------HHHHHHHHHHHCcCHHhhcC
Confidence 6788888888887 99999999999999999863
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.082 Score=46.79 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=63.4
Q ss_pred CCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH
Q 047659 485 KPDVITHTVLIRGIAS-----QGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA 559 (619)
Q Consensus 485 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 559 (619)
..|..+|...+..+.. .+.++=....++.|.+-|+.-|..+|+.|++.+-+..- .| ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP-~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IP-QN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------cc-HH
Confidence 3455666666655543 34555555666667777777777777777766554321 11 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCccc
Q 047659 560 IYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCL 610 (619)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~ 610 (619)
++....-.|-+. -+=++.++++|...|+.||..+-..|++++.+.|=+.
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 112222222222 1346788888888888888888888888888776443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.21 Score=49.34 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=96.3
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 198 (619)
-+...-.|+++++.+..+.-.-. +..+....+.+++.+.+.|.++.|+.+...- ..-.....+.|+++.|.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHH
Confidence 34455678888877777522111 2223556778888888889988888875443 22344556677777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047659 199 HMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD 278 (619)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 278 (619)
++..+ ..+...|..|.+.....|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|
T Consensus 339 ~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 65432 23666788888888888888888887776632 5566667777777777777777666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 279 LVPDLIIYSILIDGLFKAGRLKEGNELLLTA 309 (619)
Q Consensus 279 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 309 (619)
- ++....++...|+.+++.+++.+.
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 455555666667777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.67 Score=42.91 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=85.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC--CC-
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG--IY- 144 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~- 144 (619)
+.-+.-+...++.++|+..+.+.+.+-.+....+ . ++..+..+..+.|.+++++..--..++.- ..
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf----------~-~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d 78 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRF----------R-VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED 78 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHH----------H-HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677888888888888877643322211 1 56677788888888887665433222110 11
Q ss_pred --CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 047659 145 --LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CV---YEFLMNGLLRKGVIENAFHMHRQVIQRGF----- 209 (619)
Q Consensus 145 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 209 (619)
.--.++..+.+++-+..++.+++.+-..-..... +. ...+..++...+.++++++.|+.+.+...
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 0123455566666666666666666655443221 11 33455555666666666666666554311
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHH
Q 047659 210 VPNIVTCNKILKRLCINGQIGNASSLF 236 (619)
Q Consensus 210 ~~~~~~~~~ll~~~~~~~~~~~A~~~~ 236 (619)
.....++..|...|....++++|.-..
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhh
Confidence 111234555555555555555554433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=1 Score=37.04 Aligned_cols=120 Identities=12% Similarity=0.034 Sum_probs=79.8
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc-------hHHHHHHHHhcCC
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSP-DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV-------YEFLMNGLLRKGV 193 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~ 193 (619)
+.+.|..++|+.-|..+.+.|...-+ -............|+...|+..|.++-...+.+ .....-.+..+|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45678899999999999887665323 234556667788888889999998887766522 2222234456777
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
++....-.+-+...+-+.....-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777766666665554344444555666666677777777777777764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.54 Score=39.61 Aligned_cols=99 Identities=9% Similarity=0.018 Sum_probs=75.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
=+.-+..+|++++|..-|..++..-|..+.-.+++ .|..-+.++.+.+.++.|+.-....++.++. ...+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsI---------ly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kA 170 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSI---------LYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKA 170 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHH---------HHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHH
Confidence 35567789999999999999988766554422111 5666677888889999999999888887654 5556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
...-+.+|-+...+++|++-|.++.+..|
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 66667788888888999998888888777
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.59 E-value=1 Score=36.72 Aligned_cols=19 Identities=5% Similarity=-0.038 Sum_probs=7.4
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 047659 153 LMSCLVDSNSVGQYYKLCR 171 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~ 171 (619)
+++.+.+.+.++++.-++.
T Consensus 75 ~~~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYK 93 (140)
T ss_pred HHHHHHHcCcHHHHHHHHH
Confidence 3333333344444443333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.24 Score=45.20 Aligned_cols=183 Identities=8% Similarity=-0.095 Sum_probs=119.2
Q ss_pred ccCCchhHHHHHHHhhc----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHN----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
...+.+.|..+=+...+ ....+-...-+.++..+|++.+|-..++++++..|...- ++..-=
T Consensus 79 a~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDll--------------a~kfsh 144 (491)
T KOG2610|consen 79 AASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLL--------------AVKFSH 144 (491)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhhh--------------hhhhhh
Confidence 34455554443332222 233344455566677889999999999999999887543 555556
Q ss_pred HHHHHcCChhhHHHHHHHHHhC-CCCCCHHhH--HHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHH--HHHHHhcCC
Q 047659 120 ENYVRIGKIDESVEIFAYMSDM-GIYLSPDLV--QRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFL--MNGLLRKGV 193 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l--~~~~~~~~~ 193 (619)
.++...|+...-...+++++.. ++...-..| ....-++...|-+++|.+.-++..+.++ |.|..- ...+--.|+
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR 224 (491)
T ss_pred hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch
Confidence 7788889999999999999875 322222222 2233455688999999999999999988 665544 444446788
Q ss_pred HHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPN---IVTCNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
+.++.++...-...--..+ ..-|=...-.+...+.++.|+++|+.-.
T Consensus 225 ~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 225 HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 9999888765443311111 1122233445566689999999998644
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.088 Score=47.66 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=44.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh-----CC
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD-----MG 142 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 142 (619)
..++..+...|+++.+...+++.+..+|.... .|..++.+|.+.|+...|+..|+.+.+ .|
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~--------------~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEP--------------AYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchH--------------HHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 44555556666666666666666666555444 566666666666666666666666543 34
Q ss_pred CCCCHHhHHHHHHH
Q 047659 143 IYLSPDLVQRLMSC 156 (619)
Q Consensus 143 ~~~~~~~~~~l~~~ 156 (619)
+.|.+.+......+
T Consensus 223 i~P~~~~~~~y~~~ 236 (280)
T COG3629 223 IDPAPELRALYEEI 236 (280)
T ss_pred CCccHHHHHHHHHH
Confidence 55555554444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.48 Score=37.97 Aligned_cols=102 Identities=8% Similarity=0.015 Sum_probs=70.0
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh--HHHHHHhhcCCCc
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN--FFRLFRDSLGDFG 112 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 112 (619)
.++...+..++++++..+++-+.- |..++.-.--+.++.+.|+|.+|..+|+...+..+..+- .+.++.-...+++
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 344445679999999999998776 888888888889999999999999999999987654331 1111111222222
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
.|...+......|...+|+.+.+.+.
T Consensus 95 -~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 -EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred -HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 55555666666666666666665554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.07 E-value=2.5 Score=41.41 Aligned_cols=149 Identities=14% Similarity=0.089 Sum_probs=77.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 231 (619)
++.--.+..++..-++.-.++++.+|+. ...++-+--......+|.+++++..+.| + ..+. ... ..+.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAg-E---~~lg---~s~----~~~~ 242 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAG-E---ASLG---KSQ----FLQH 242 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHH-H---Hhhc---hhh----hhhc
Confidence 3444445556666666666666666643 3333333334556677777777776654 1 0000 000 0000
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 232 ASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV-PDLIIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 232 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
.-...+....+...+-..+-..+..++.+.|+.++|.+.|++|.+.... -...+...|+.++...+.+.++..++.+..
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 0011111222212222333344555666778888888888887654222 133456677777778888888888877765
Q ss_pred Hc
Q 047659 311 DR 312 (619)
Q Consensus 311 ~~ 312 (619)
+.
T Consensus 323 Di 324 (539)
T PF04184_consen 323 DI 324 (539)
T ss_pred cc
Confidence 43
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.9 Score=39.58 Aligned_cols=152 Identities=14% Similarity=0.009 Sum_probs=112.9
Q ss_pred HHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-Cccc----hHHHH--HHHHhcCC
Q 047659 121 NYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK-GFCV----YEFLM--NGLLRKGV 193 (619)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~l~--~~~~~~~~ 193 (619)
..-..|++.+|...++.+++..|. |.-++.-.=.++...|+...-...++++... +++. |..=+ -++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345678999999999999987554 8888888888999999999999999998776 6543 22222 23447899
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC----ChhhHHHHHHHHHhcCCHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP----NVVTFSTLINAFCKEAKLEKAFQ 269 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~ 269 (619)
+++|.+..++..+.+ +.|.-...++..++-..|+..++.+...+-...--.. .-.-|+. .-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHH
Confidence 999999999999887 6777777888888989999999998876644321111 1122333 334556689999999
Q ss_pred HHHHHH
Q 047659 270 LYNLMM 275 (619)
Q Consensus 270 ~~~~m~ 275 (619)
+|+.=.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998643
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.4 Score=34.43 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=50.8
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047659 522 DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLE 590 (619)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 590 (619)
+...++..+......|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4445677788888999999999999988764 4678899999999999999999999999999998864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.043 Score=31.50 Aligned_cols=32 Identities=16% Similarity=-0.038 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
..+..++.++...|++++|++.|++++..+|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 46788999999999999999999999998775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.84 E-value=2.2 Score=41.15 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=91.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHH-------H-
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLF-------R- 105 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~- 105 (619)
............+|++.-..+++.. |-..++...++.++.++|+.+.|.+++++++=....... ..+ .
T Consensus 12 ~~q~~F~~~v~~~Dp~~l~~ll~~~--PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~--~~F~~~~~~~~~ 87 (360)
T PF04910_consen 12 EAQEQFYAAVQSHDPNALINLLQKN--PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH--PSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH--HHhhhhhccccc
Confidence 3344455555566666666665332 689999999999999999999999999999754331111 011 0
Q ss_pred --h----hcCCCcccH---HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhHHHHHHHHHh
Q 047659 106 --D----SLGDFGCDY---SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV-DSNSVGQYYKLCRAMR 174 (619)
Q Consensus 106 --~----~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~ 174 (619)
. ..+.+...| ..-+..+.+.|-+..|.++.+-+...++..||......|..|+ +.++++--+++++...
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 0 011222233 3346678888888888888888888877777777777777774 6677776666666543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.8 Score=35.17 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=42.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK 260 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (619)
...++..+...+.+.....+++.+...+ ..+....+.++..|++.+. .+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3344455555555566666666665554 3455566666666655422 222222221 1123333445555556
Q ss_pred cCCHHHHHHHHHHH
Q 047659 261 EAKLEKAFQLYNLM 274 (619)
Q Consensus 261 ~~~~~~a~~~~~~m 274 (619)
.+.++++.-++..+
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666665554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.57 E-value=6.5 Score=40.57 Aligned_cols=108 Identities=9% Similarity=0.006 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047659 455 IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF 534 (619)
Q Consensus 455 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 534 (619)
+.+--+..+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-+++-+... .+.-|.....+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34445556677899999998887776 5888999999999999999987666554433 2556888999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047659 535 KGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLF 581 (619)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (619)
+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.+.-
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 999999999988765432 1 4567888899998887654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.053 Score=31.18 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
.+|..++.++...|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46888999999999999999999999998775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.38 Score=42.80 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=61.4
Q ss_pred CChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047659 246 PNVVTFSTLINAFCK-----EAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVV 320 (619)
Q Consensus 246 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 320 (619)
.|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-+..- .| ...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP-~nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IP-QNV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------cc-HHH
Confidence 345555555554432 35566667777888888888888888888876543221 11 112
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047659 321 FSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRL 369 (619)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 369 (619)
+..+.-.|- .+-+-+++++++|...|+.||..+-..++.++.+.+..
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 222222222 22344666777777777777777777777777666543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.5 Score=37.03 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhc
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLS--PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRK 191 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~ 191 (619)
..++..+..+|++++|..-++..+.....-+ ..+-..+.++....|.+++|+..++.....+... ...-..++...
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 3445667778888888888887764321111 1223446667777888888888877776666533 44455667777
Q ss_pred CCHHHHHHHHHHHHHCC
Q 047659 192 GVIENAFHMHRQVIQRG 208 (619)
Q Consensus 192 ~~~~~A~~~~~~~~~~~ 208 (619)
|+-++|+.-|+..+..+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777777777664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.39 E-value=9.6 Score=41.74 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 047659 249 VTFSTLINAFCKEA--KLEKAFQLYNLMME 276 (619)
Q Consensus 249 ~~~~~l~~~~~~~~--~~~~a~~~~~~m~~ 276 (619)
.....++.+|.+.+ .++.+++...+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34445666676666 55666666655554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.5 Score=35.19 Aligned_cols=72 Identities=8% Similarity=-0.020 Sum_probs=51.5
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-chHHHHHHHH
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-VYEFLMNGLL 189 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~ 189 (619)
.++..-...++++++..+++.+.-..|. .+..-..-...+...|++++|+.+|+++.+..+. +|...+.++|
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3344455589999999999999876554 4444455566778899999999999999988874 4444444333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.68 Score=42.11 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=52.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 047659 525 TYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTD-----RGLEPDIITYNTI 599 (619)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l 599 (619)
++..+++.+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|++.|+.+.+ .|+.|..++....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566667777777777777777777653 23666777777777777777777777776654 5777777766666
Q ss_pred HHH
Q 047659 600 ICG 602 (619)
Q Consensus 600 l~~ 602 (619)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=6.2 Score=38.72 Aligned_cols=98 Identities=8% Similarity=0.034 Sum_probs=62.1
Q ss_pred CCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH---ccCChHHHHHHHHHHHH-CCCCcCHH
Q 047659 485 KPDVITH-TVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF---KGKNISVGLHMFKLMER-NGVAPDIA 559 (619)
Q Consensus 485 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~-~~~~~~~~ 559 (619)
.|+..++ +.+++-+...|-.++|...|..+.... +|+...|..++..-. .+| ...+.+.++.|.. .| -|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 3444443 455666667777777777777777642 445566666654322 223 6677777777766 34 5777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 560 IYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
.|--.+..-...|..+.+-.++.++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 777777666677887777777666654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.15 E-value=7.1 Score=39.28 Aligned_cols=395 Identities=13% Similarity=0.050 Sum_probs=211.8
Q ss_pred CCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHH-
Q 047659 46 NNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENY- 122 (619)
Q Consensus 46 ~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 122 (619)
.+.+.+...++..+. |.--.-|...+..-.+.|..+.+.++|++.+...|-..+ .|.....-+
T Consensus 59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Svd--------------lW~~Y~~f~~ 124 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVD--------------LWLSYLAFLK 124 (577)
T ss_pred hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH--------------HHHHHHHHHh
Confidence 334455555565554 555566778888889999999999999999998775544 444443333
Q ss_pred HHcCChhhHHHHHHHHHhC-CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhc------
Q 047659 123 VRIGKIDESVEIFAYMSDM-GIY-LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRK------ 191 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~------ 191 (619)
...|+.+...+.|+++... |.. .+...|...+..-..++++.....+|+++++... +.+..--.-++..
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhh
Confidence 3568888899999988764 211 2456788888888899999999999999887644 2222222222222
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCChhhHHHHHHHHH-hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 047659 192 GVIENAFHMHRQVIQR---G-FVPNIVTCNKILKRLC-INGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEK 266 (619)
Q Consensus 192 ~~~~~A~~~~~~~~~~---~-~~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 266 (619)
...+.+.++-...... . .......+..-+.-.. ..+..+.+..+..+.. ...-..+-..-....
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEE 273 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHH
Confidence 2233333322222211 0 0001111111111000 0011111111111110 000111222222333
Q ss_pred HHHHHHHHHhC---CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 047659 267 AFQLYNLMMEM---DL----VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQ 339 (619)
Q Consensus 267 a~~~~~~m~~~---~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 339 (619)
..-.|+.-... .+ .++..+|...+.--...|+.+.+.-+++...-.- ..=...|--.+......|+.+-+..
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~ 352 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANN 352 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHH
Confidence 33334433332 12 2345678888888889999999888888776321 1122334444444445588888887
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHH---HHHHH
Q 047659 340 TYDRMLNGGFLPNVISYSILIKGL-CQQGRLVEACGLFGQVLIRRLEPSLLT-YSSLIDGFCKSGKLRDGFS---LYDNM 414 (619)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~---~~~~~ 414 (619)
++....+--++..+. ...+-..+ -..|++..|..+++.+...- |+..- -..-+....+.|..+.+.. ++...
T Consensus 353 ~~~~~~~i~~k~~~~-i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~ 429 (577)
T KOG1258|consen 353 VLARACKIHVKKTPI-IHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSI 429 (577)
T ss_pred HHHhhhhhcCCCCcH-HHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh
Confidence 776665543322222 22222222 23679999999999988763 55432 2223444556777777663 33222
Q ss_pred HHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-----HHhcCChhHHHHHHHHHhhCCCCCCHh
Q 047659 415 IKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDG-----CCRLKRATDTVKLFMLMGMYNIKPDVI 489 (619)
Q Consensus 415 ~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~ 489 (619)
..... +....+.+.-- +.-.++.+.|..++..+.+. .+++..
T Consensus 430 ~~~~~--------------------------------~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~ 476 (577)
T KOG1258|consen 430 YEGKE--------------------------------NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKV 476 (577)
T ss_pred ccccc--------------------------------CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHH
Confidence 22111 11111111111 22357778888888887765 366677
Q ss_pred hHHHHHHHHHhcC
Q 047659 490 THTVLIRGIASQG 502 (619)
Q Consensus 490 ~~~~l~~~~~~~g 502 (619)
.|..+++.....+
T Consensus 477 ~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 477 LYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhCC
Confidence 7777776665544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.06 Score=30.95 Aligned_cols=32 Identities=3% Similarity=0.099 Sum_probs=25.0
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047659 135 FAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYY 167 (619)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 167 (619)
|++.++..|. ++.+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666776655 7888888888888888888875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=4.1 Score=36.46 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHH-HH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM-GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMN-GL 188 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~-~~ 188 (619)
.+......+...+++..+...+...... ........+......+...+.+..+.+.+.......++. ...... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 5566667777777777777777777642 123345556666666667777777777777776655421 222223 56
Q ss_pred HhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 047659 189 LRKGVIENAFHMHRQVIQRGF--VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEK 266 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 266 (619)
...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...++++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 666666666666666644211 011222222223334445555555555555443111123334444444444444455
Q ss_pred HHHHHHHHHh
Q 047659 267 AFQLYNLMME 276 (619)
Q Consensus 267 a~~~~~~m~~ 276 (619)
+...+.....
T Consensus 221 a~~~~~~~~~ 230 (291)
T COG0457 221 ALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHh
Confidence 5544444444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.063 Score=30.48 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=27.3
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
++..++.++.+.|++++|...|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4567888999999999999999999998876
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.13 Score=30.01 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=22.7
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHH
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (619)
++..++.++.+.|++++|++.|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.65 E-value=3.6 Score=34.24 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=75.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 269 QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
+.++.+.+.+++|+...+..+++.+.+.|++.. +..+...++-+|.......+-.+.. ....+.++--.|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 455666667778888888888888888877554 3344455555555544444322222 223333333333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 349 FLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
=...+..+++.+...|++-+|..+.+..... +......++++-.+.++...-..+++-..+.
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0112455666777788888888777665322 2222345666666677766555555555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=6 Score=36.68 Aligned_cols=133 Identities=15% Similarity=0.043 Sum_probs=65.5
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047659 180 VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING-QIGNASSLFDVLLLVGPKPNVVTFSTLINAF 258 (619)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 258 (619)
+....+.++...++ ..+...+-.+.+. ++..+....+.++...+ ....+...+..+.. .++...-...+.++
T Consensus 144 VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 144 VRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred HHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 34444555555554 3444444444432 33344444444444432 13345555555542 34555566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047659 259 CKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 328 (619)
.+.|+. .+...+-...+.+ + .....+.++...|+. +|...+..+.+. .+|..+-...+.++
T Consensus 217 g~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 217 ALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 666663 3444444444332 2 233455666666664 466666666653 23555544444444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.43 E-value=11 Score=39.19 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=95.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD 148 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 148 (619)
.-++.+++.+.+++|..+-+.....-+.. .........+..+.-.|++++|-...-.|.. -+..
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~------------~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~ 424 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERF------------VIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAA 424 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCcccc------------chHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHH
Confidence 45678888889999988766554432210 1222677888888999999999999988853 3677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhh-CCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 047659 149 LVQRLMSCLVDSNSVGQYYKLCRAMRG-KGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING 227 (619)
Q Consensus 149 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 227 (619)
.|..-+..+...++......++-.-.. .+|.+|..++..+.. . .- .-|.+.++.- +++...-..++++- .-
T Consensus 425 eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~---~~-~~F~e~i~~W-p~~Lys~l~iisa~--~~ 496 (846)
T KOG2066|consen 425 EWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-S---DV-KGFLELIKEW-PGHLYSVLTIISAT--EP 496 (846)
T ss_pred HHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-H---HH-HHHHHHHHhC-ChhhhhhhHHHhhc--ch
Confidence 788888888777775544333221111 122336666666665 1 11 2233333321 22222222222111 00
Q ss_pred CcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 228 QIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 228 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
...+. .. +...-..|+..|...++++.|++++-..+
T Consensus 497 ----------q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 497 ----------QIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred ----------HHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 11110 11 11222337778888888888888876665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.24 E-value=4.6 Score=34.23 Aligned_cols=122 Identities=9% Similarity=0.036 Sum_probs=82.6
Q ss_pred HccCCchhHHHHHHHhhcCCCCccH-----HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH
Q 047659 43 IKTNNPTPAIQFFKWTHNCVSSPNI-----AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF 117 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (619)
...+.+ +.....+.+...+....| ..++..+.-.|++++|...++..+.... ..+. ..+ +-..
T Consensus 64 ~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~l-k~l---------~~lR 131 (207)
T COG2976 64 VQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-DENL-KAL---------AALR 131 (207)
T ss_pred HhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHHH-HHH---------HHHH
Confidence 335555 444444545542223333 2456777899999999999998886422 2111 000 4557
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
|.+.....|.+++|+..++.....+. .+........++...|+-++|+..|...+..++
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 78889999999999999988854322 223345667889999999999999999988765
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.24 E-value=3.3 Score=32.49 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047659 251 FSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGL 314 (619)
Q Consensus 251 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 314 (619)
....+..+...|+-+.-.+++..+.+ +-++++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555555543 1234555555555555555555555555555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.06 E-value=25 Score=42.04 Aligned_cols=63 Identities=14% Similarity=-0.023 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 317 DVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 317 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
-..+|-...+....+|.++.|...+-...+.+ -+..+-.....+-..|+...|+.+++.....
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 35577788888888999998887776666553 3334455566777889999999998888754
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.06 E-value=7.7 Score=36.25 Aligned_cols=131 Identities=12% Similarity=0.169 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHcCCC-
Q 047659 264 LEKAFQLYNLMMEMDLVPDLIIYSILIDGLFK--AG----RLKEGNELLLTALDRGL---KLDVVVFSSVMDAYVGIGD- 333 (619)
Q Consensus 264 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~- 333 (619)
+++...+++.|.+.|+.-+..+|-+..-.... .. ....+..+++.|++..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777666665553333322 11 24567778888876542 2344445555433 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047659 334 ---VGRAVQTYDRMLNGGFLPNVI--SYSILIKGLCQQGR--LVEACGLFGQVLIRRLEPSLLTYSSLID 396 (619)
Q Consensus 334 ---~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 396 (619)
.+.+..+|+.+.+.|+..+.. ..+.++........ ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356667777777766655433 33333333322222 3467778888888888777777665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.21 Score=29.18 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
+..|+..|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5567777777777777777777754
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.29 E-value=9.8 Score=35.56 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047659 505 SSAILLFFQMLKRGLTPDVITYSAII 530 (619)
Q Consensus 505 ~~A~~~~~~~~~~~~~p~~~~~~~l~ 530 (619)
.++.++++.+.+.|+++....|..+.
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHH
Confidence 35555555666555555554444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.41 Score=43.78 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=67.6
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhcCC
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRKGV 193 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 193 (619)
.-+.-|.++|.+++|+++|.+.....+. |+..+..-+.+|.+..++..|..-+..++..+- -.|..-+.+--..|.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3456789999999999999998876443 888899999999999999988888877766553 225555555555666
Q ss_pred HHHHHHHHHHHHHC
Q 047659 194 IENAFHMHRQVIQR 207 (619)
Q Consensus 194 ~~~A~~~~~~~~~~ 207 (619)
..+|.+-++.++..
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 77777766666665
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.20 E-value=2.6 Score=31.26 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 541 VGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICG 602 (619)
Q Consensus 541 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 602 (619)
+..+-++.+....+.|++.+..+.+++|.+..++..|.++++..+.+ ..+....|..++.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 44455555555667777777777777777777777777777777642 12222256655554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.1 Score=37.81 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=73.5
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc-CCCCcc------HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN-CVSSPN------IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
+..=...+.++|++++|..-|..++. ++.... |...+.++.+.+.++.|+.--.+++..+|....
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k-------- 169 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK-------- 169 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH--------
Confidence 33445567889999999999999988 333332 234556778999999999999999998875444
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
+...-+.+|-+..++++|++=|..+.+..|.
T Consensus 170 ------Al~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 170 ------ALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred ------HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 3334466888999999999999999987654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.11 E-value=2.8 Score=35.70 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHC---CCCcCH----HH
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTPD--VITYSAIIHGLFKGKNISVGLHMFKLMERN---GVAPDI----AI 560 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~~ 560 (619)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.+...+++..+...+.++... |-.++. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455666777777777777777777776543333 234566777777777777777776666542 111111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-CC-------CCCCHHHHHHHHHHHhhcCc
Q 047659 561 YNVLLNMLIKECNLDAALKLFGQLTD-RG-------LEPDIITYNTIICGYCSLNS 608 (619)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~g-------~~p~~~~~~~ll~~~~~~~~ 608 (619)
|..+ .+...|++..|-+.|-.... .+ +.|+.......+.++.....
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~R 171 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLDR 171 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCCH
Confidence 2222 23456788887777665542 21 23344444445555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.1 Score=41.14 Aligned_cols=94 Identities=9% Similarity=-0.032 Sum_probs=43.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
-++-|.++|.+++|+.-|.+.+..+|-++. .+..-+.+|.+..++..|..=.+.++..+- .-..+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV--------------~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KA 167 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPV--------------YHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKA 167 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCcc--------------chhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHH
Confidence 344445555555555555555554443322 444444455555555555444444433211 12234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
|..-+.+--..|...+|.+-++.+++..|
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 44444444444555555555555555444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.33 Score=27.72 Aligned_cols=31 Identities=16% Similarity=-0.011 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
++|..++.++...|++++|...|+++++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678899999999999999999999998766
|
... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.69 E-value=3.3 Score=36.37 Aligned_cols=106 Identities=8% Similarity=-0.134 Sum_probs=74.3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHh--------cCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQ--------FGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
..-++-+.+.|++.+|..-|+.++.. .|..+++...=... -..+.+..++++..|++-++++...+++
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~----tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMI----TPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhh----hHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34556677899999999999988653 23333322111000 0156666777778888888888888888
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 140 DMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
...+. |..++..-+.+.+..-+.++|..-|..+++..|
T Consensus 258 ~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 258 RHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 77544 778888888888877788888888888877776
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.34 Score=27.70 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
+|..++.+|...|++++|+..|+++++..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 678888899999999999999999887543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.85 Score=37.98 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=46.7
Q ss_pred hHHHHHHHhhc--CCCCccHHHHHHHHHc---cC-------ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH
Q 047659 50 PAIQFFKWTHN--CVSSPNIAQLIHVLLQ---SD-------MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF 117 (619)
Q Consensus 50 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~---~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (619)
.|.+-++.... |.+.+.++.-+.++.. .. -+++|+.-|++++..+|+..+ ++..
T Consensus 9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd--------------Alw~ 74 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD--------------ALWC 74 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH--------------HHHH
T ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH--------------HHHH
Confidence 34444444222 6666666554444432 22 345666666677777777666 6777
Q ss_pred HHHHHHHcCC-----------hhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 118 LIENYVRIGK-----------IDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 118 l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
++.+|...+. ++.|.+.|+.... ..|+...|..-+...
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 7777766542 3444455555544 345555555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.30 E-value=4 Score=40.85 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=78.0
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 201 (619)
..-.|+++.|..++-.+. -...+.++..+-++|-.++|+++... . ..-.....+.|+++.|.++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~D-------~-d~rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELSTD-------P-DQRFELALKLGRLDIAFDLA 660 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCCC-------h-hhhhhhhhhcCcHHHHHHHH
Confidence 344566666666554442 23344566666666666666554211 1 11122334456666665554
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047659 202 RQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP 281 (619)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 281 (619)
.+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-...++.|..
T Consensus 661 ~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~- 724 (794)
T KOG0276|consen 661 VEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN- 724 (794)
T ss_pred Hhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-
Confidence 433 2444566666666666666666666655532 445555555566655555554444444322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 282 DLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 282 ~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
|...-++...|+++++.+++..
T Consensus 725 -----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 -----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -----chHHHHHHHcCCHHHHHHHHHh
Confidence 2233345556666666655543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.27 E-value=2.3 Score=36.24 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD--LIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
..+..+...|.+.|+.+.|.+.|..+.+....+. ...+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666777777777777777777766543333 23455666666667777766666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.12 E-value=3.3 Score=36.22 Aligned_cols=109 Identities=9% Similarity=0.007 Sum_probs=72.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..--..+.....++.|+.-|..++. |..+.-|..-+..+++..+|+.+..--.++++.+|+...
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk------------ 79 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK------------ 79 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH------------
Confidence 333333444556677788887777665 555566677788888888888888888888877666544
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHh----CCCCCCHHhHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSD----MGIYLSPDLVQRLMSC 156 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~ 156 (619)
...-+.+.......+++|+.++++... ..+.+....+..|..+
T Consensus 80 --~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 80 --AHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 566777788888888888888887732 2233344455555444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=24 Score=37.37 Aligned_cols=79 Identities=10% Similarity=0.002 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 229 IGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
..++...++..... ..+.....--+......++++.+...+..|....- -...-.-=+.+++...|+.++|...|+.
T Consensus 295 ~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555544321 11333333344444467777777777777654321 1222333345555566777777777777
Q ss_pred HH
Q 047659 309 AL 310 (619)
Q Consensus 309 ~~ 310 (619)
+.
T Consensus 372 ~a 373 (644)
T PRK11619 372 LM 373 (644)
T ss_pred Hh
Confidence 63
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.78 E-value=24 Score=37.17 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=40.9
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCC-------hhHHHHHHHHHHHh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM-------RDVASHVFDKMVIQ 93 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~ 93 (619)
+..-++.++-.+++.|++++|.++.+.... ......+...+..+....+ -++-...|++.+..
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 555788999999999999999999955554 5566777777777765422 22444455555543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.54 Score=26.72 Aligned_cols=26 Identities=4% Similarity=-0.155 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
|..+..++...|++++|++.|++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.73 E-value=8.8 Score=32.03 Aligned_cols=132 Identities=11% Similarity=0.126 Sum_probs=63.4
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047659 236 FDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315 (619)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 315 (619)
+..+...++.|+...+..++..+.+.|.+....+ +...++-+|.......+-.+.. ....+.++--+|..+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH---
Confidence 3344455566666666666666666665443333 3333444454444433322222 222233333333322
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 316 LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLI 381 (619)
Q Consensus 316 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (619)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-...
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112445556666777777777766654322 112224455555556665555555544444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.68 E-value=11 Score=33.06 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=14.9
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCC
Q 047659 222 RLCINGQIGNASSLFDVLLLVGPK 245 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~~~~ 245 (619)
.-+..+++.+|.++|+++......
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334556777777777776655443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.32 E-value=33 Score=37.95 Aligned_cols=137 Identities=19% Similarity=0.220 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047659 251 FSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLII----YSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMD 326 (619)
Q Consensus 251 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 326 (619)
|.-.+..--+.|.+.+|+.++ .|+... |.+....+.....+++|--+|+..-+. .--+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHH
Confidence 333334444455555555443 344444 444455555677777777777654322 23467
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047659 327 AYVGIGDVGRAVQTYDRMLNGGFLPNVI--SYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKL 404 (619)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 404 (619)
+|..+|+|.+|+.+..++... .+.. +-..|...+...+++-+|-++..+.... ..-.+..+++...+
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHH
Confidence 788889999988888877642 1222 2356777788888888888888777643 22334455666677
Q ss_pred HHHHHHHHHHH
Q 047659 405 RDGFSLYDNMI 415 (619)
Q Consensus 405 ~~a~~~~~~~~ 415 (619)
++|..+.....
T Consensus 1043 ~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1043 EEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhcc
Confidence 77776665443
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.30 E-value=17 Score=36.51 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=99.3
Q ss_pred cCCchhHHHHHHHhhc--------------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHH---HHHHhh
Q 047659 45 TNNPTPAIQFFKWTHN--------------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFF---RLFRDS 107 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~ 107 (619)
...+++|..-|.-+.. |...++...++.++-.+|+.+-|..+.++.+=....-+... -+..+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3344566666654433 56667778899999999999988888887754311100000 000011
Q ss_pred ----cCCCcccHHHH---HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhHHHHHHHHHhhCCc-
Q 047659 108 ----LGDFGCDYSFL---IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV-DSNSVGQYYKLCRAMRGKGF- 178 (619)
Q Consensus 108 ----~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~- 178 (619)
.|.+...|.+| ++.+.+.|-+.-|.++..-+++.++.-||.....++..|+ +..+|.=.+++++.....+.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 12223244443 5667788999999999999998877778888888888884 67777777777777644433
Q ss_pred ----cc-hHHH-HHHHHhcCC---HHHHHHHHHHHHHC
Q 047659 179 ----CV-YEFL-MNGLLRKGV---IENAFHMHRQVIQR 207 (619)
Q Consensus 179 ----~~-~~~l-~~~~~~~~~---~~~A~~~~~~~~~~ 207 (619)
+. |... +..|.+... ...|+..+.++++.
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 33 4433 333443333 34455555555544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.12 E-value=18 Score=34.53 Aligned_cols=104 Identities=8% Similarity=0.001 Sum_probs=67.4
Q ss_pred HHhhc-CCCCccHHHHHHHHHcc------------CChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHH
Q 047659 56 KWTHN-CVSSPNIAQLIHVLLQS------------DMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENY 122 (619)
Q Consensus 56 ~~~~~-~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (619)
+.+.. |.+..+|..++..--.. .-.+.-..+|+++++.+|.+.. ++...+..+
T Consensus 10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~--------------L~l~~l~~~ 75 (321)
T PF08424_consen 10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSER--------------LLLGYLEEG 75 (321)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHH
Confidence 34444 77778887776543222 1234556678888887776554 667777788
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHh
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD---SNSVGQYYKLCRAMR 174 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~ 174 (619)
.+..+.+...+.+++++...+. ++..|...+..... .-.++....+|.+.+
T Consensus 76 ~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 76 EKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 8888888888888888876544 67777777766543 224556666555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.92 E-value=27 Score=36.34 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH-----HHHcCChhhHHHHHHHHHh-------CCCCCCH
Q 047659 80 RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN-----YVRIGKIDESVEIFAYMSD-------MGIYLSP 147 (619)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~ 147 (619)
...|...++.+....... ....++.+ +....|++.|+.+|+.+.+ .+ .+
T Consensus 228 ~~~a~~~~~~~a~~g~~~----------------a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~ 288 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSE----------------AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LP 288 (552)
T ss_pred hhHHHHHHHHHHhhcchH----------------HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CC
Confidence 567888888777653322 12222222 4456799999999999976 43 44
Q ss_pred HhHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCc-cchHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 148 DLVQRLMSCLVDSN-----SVGQYYKLCRAMRGKGF-CVYEFLMNGLLRK---GVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 148 ~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
.....+..+|.+.. +...|..++....+.+. +....+..++..- .+...|.++|..+.+.| .+....+..
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la 367 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLA 367 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHH
Confidence 46777888887653 55678888888888776 5555555555432 46778888898888887 222222222
Q ss_pred HHHHHH--hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047659 219 ILKRLC--INGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV 280 (619)
Q Consensus 219 ll~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 280 (619)
++-... ...+...|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|..
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 222211 2345677888888877766 2232222233333333 6667777666666665544
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=89.91 E-value=20 Score=34.77 Aligned_cols=149 Identities=11% Similarity=-0.024 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 047659 79 MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV 158 (619)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (619)
.+.++...|..++... +++.+..+....|.-..++..+...+.++|+.+.|.+++++++-. =..++......+.
T Consensus 9 ~Y~~~q~~F~~~v~~~--Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~ 82 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSH--DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFR 82 (360)
T ss_pred HHHHHHHHHHHHHHcc--CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhh
Confidence 3444555555554432 222222222333332227777788888888888888888887531 0111111111100
Q ss_pred ---hcCCh------hHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCC
Q 047659 159 ---DSNSV------GQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLC-INGQ 228 (619)
Q Consensus 159 ---~~~~~------~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~ 228 (619)
..|.. .+=+.+|.. ...-+..+.+.|.+..|+++.+-+...+..-|+......|+.|+ +.++
T Consensus 83 ~~~~~g~~rL~~~~~eNR~ffla--------l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 83 SNLTSGNCRLDYRRPENRQFFLA--------LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred cccccCccccCCccccchHHHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 01100 000000000 22334566678888888888888888764446666666666664 5567
Q ss_pred cchHHHHHHHHHh
Q 047659 229 IGNASSLFDVLLL 241 (619)
Q Consensus 229 ~~~A~~~~~~~~~ 241 (619)
++-.+++.+....
T Consensus 155 y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 155 YQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHhHhh
Confidence 7666676666543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=89.89 E-value=4 Score=30.03 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCC
Q 047659 84 SHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL-SPDLVQRLMSCLVDSNS 162 (619)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 162 (619)
...++..+..+|++.+ ....++..+...|++++|++.+-.+.+.+... +...-..++.++.-.|.
T Consensus 8 ~~al~~~~a~~P~D~~--------------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLD--------------ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HH--------------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4456666777777666 67788888888888888888888887765433 34445555555554444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.77 E-value=31 Score=36.85 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 190 RKGVIENAFHMHRQVIQRG----FVPNIVTCNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
..|+++.|.++.+.....= ..+....+..+..+..-.|++++|..+.....
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 4566666666665555441 12233344444555555666666666655544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=17 Score=33.75 Aligned_cols=231 Identities=10% Similarity=0.024 Sum_probs=110.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhh-CCccchHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRG-KGFCVYEFLMNGLLRKGVI----ENAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
|.......+..+...|. .++...+..+.. .++.+....+.++...|+. .++...+..+... .++..+....+
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 55555555555555553 233333333322 2223344445555555542 3455555555333 34555555555
Q ss_pred HHHHhcCCc-----chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047659 221 KRLCINGQI-----GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFK 295 (619)
Q Consensus 221 ~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 295 (619)
.++...+.. ..+...+.... ..++...-...+.++.+.++ +.+...+-.+.+. +|..+-...+.++.+
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNS 185 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhc
Confidence 555544321 12233333322 23344555556666666665 3445555454442 344444444555554
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047659 296 AG-RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACG 374 (619)
Q Consensus 296 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 374 (619)
.+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++.+.|.. +|..
T Consensus 186 ~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred CCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHH
Confidence 32 13344445544443 23555556666666666663 4444444444432 2 233556666666664 5666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
Q 047659 375 LFGQVLIRRLEPSLLTYSSLIDGF 398 (619)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~ll~~~ 398 (619)
.+..+.+. .||..+-...+.+|
T Consensus 256 ~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 256 VLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhh--CCChhHHHHHHHHH
Confidence 66666654 33555544444444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.53 E-value=2.8 Score=41.90 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=56.0
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 201 (619)
..+.|+++.|.++..+.. ++.-|..|.++....+++..|.+.|.+... |..++-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHH
Confidence 345567777766655441 455677777777777777777776666543 445555555566655555555
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 047659 202 RQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVL 239 (619)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 239 (619)
....+.| ..| ...-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 5554444 222 2223344556666665555443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.50 E-value=5.3 Score=33.46 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHH---Hc-------CChhhHHHHHHHHHhCCCCCCHHh
Q 047659 80 RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYV---RI-------GKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~-------g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
++.|++.++.....+|...+. ++.-+.++. +. ..+++|+.-|++.+..+|. ...+
T Consensus 7 FE~ark~aea~y~~nP~Dadn--------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADN--------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH--------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHH--------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHH
Confidence 577888889988888887663 222222222 22 2345566666666665444 4466
Q ss_pred HHHHHHHHHhc
Q 047659 150 VQRLMSCLVDS 160 (619)
Q Consensus 150 ~~~l~~~~~~~ 160 (619)
+..+..+|...
T Consensus 72 lw~lGnA~ts~ 82 (186)
T PF06552_consen 72 LWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66677666543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.33 E-value=15 Score=32.60 Aligned_cols=165 Identities=22% Similarity=0.223 Sum_probs=65.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH-HH
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQR-GFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLIN-AF 258 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~ 258 (619)
.......+...+.+..+...+...... ........+......+...+.+..+.+.+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 333344444444444444444444331 112333334444444444444555555555544322221 111111111 44
Q ss_pred HhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 047659 259 CKEAKLEKAFQLYNLMMEMDL--VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGR 336 (619)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (619)
...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 455555555555555533111 011222222222233444555555555444443211123334444444444444444
Q ss_pred HHHHHHHHHh
Q 047659 337 AVQTYDRMLN 346 (619)
Q Consensus 337 a~~~~~~~~~ 346 (619)
+...+.....
T Consensus 221 a~~~~~~~~~ 230 (291)
T COG0457 221 ALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.24 E-value=32 Score=36.29 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN 226 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 226 (619)
.++-.|.+.|.+++|.++....... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3445566888888888877444433 345555666667777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.18 E-value=7.2 Score=28.70 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 540 SVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICG 602 (619)
Q Consensus 540 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 602 (619)
=++.+-++.+....+.|++.+..+.+++|.+.+|+..|.++++..+.+ ...+...|..++..
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 345555666666667777777777777777777777777777766632 12234455555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.05 E-value=35 Score=36.43 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=46.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHH
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (619)
..++-+.+...|++.|+++.|++..+.-+. --..++..-+..+.+.+++..|-+.|-+..+
T Consensus 357 vndE~R~vWk~yLd~g~y~kAL~~ar~~p~-~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 357 VNDEARDVWKTYLDKGEFDKALEIARTRPD-ALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred eccchHHHHHHHHhcchHHHHHHhccCCHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 345678899999999999999998775531 1123445667788889999999999988865
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.49 E-value=0.55 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHccCChhHHHHHHH
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFD 88 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~ 88 (619)
.+...++.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667788888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.67 Score=26.05 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
..++.++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.18 E-value=40 Score=36.08 Aligned_cols=193 Identities=17% Similarity=0.102 Sum_probs=107.4
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 047659 223 LCINGQIGNASSLFDVLLLVGPKPNVV-------TFSTLIN-AFCKEAKLEKAFQLYNLMMEM----DLVPDLIIYSILI 290 (619)
Q Consensus 223 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll 290 (619)
....+++++|..++.++...-..|+.. .|+.+-. .....|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345688999999998877542333221 3443332 234578889999888887654 2233455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----HHHHHcCCCH--HHHHHHHHHHHhCC--C----CCCHHHHH
Q 047659 291 DGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSV-----MDAYVGIGDV--GRAVQTYDRMLNGG--F----LPNVISYS 357 (619)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~~~~--~~a~~~~~~~~~~~--~----~~~~~~~~ 357 (619)
.+..-.|++++|..+..+..+..-..+...+... ...+...|+. ......|....... - .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7778889999999888877654322233333322 2334556632 23333333332210 0 11223444
Q ss_pred HHHHHHHhcCCHHHHHHHHHH----HHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047659 358 ILIKGLCQQGRLVEACGLFGQ----VLIRRLEPSLLTY--SSLIDGFCKSGKLRDGFSLYDNMIKRG 418 (619)
Q Consensus 358 ~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~ 418 (619)
.++.++.+ .+.+..-... .......|-...+ ..++......|+.++|...+.++....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44555544 3333322222 2222222222222 356778888999999999998887653
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.13 E-value=3.6 Score=40.99 Aligned_cols=131 Identities=9% Similarity=0.029 Sum_probs=88.1
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhh-cCCCCccHH--HHHHHHH-ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTH-NCVSSPNIA--QLIHVLL-QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~--~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
....++..+...--.++-+..|-... ..+..+.|. .++..|. ..|+...|.+-+..+....|...+.
T Consensus 573 ~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v--------- 643 (886)
T KOG4507|consen 573 ARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV--------- 643 (886)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc---------
Confidence 34445555544444443333332222 244444443 4444444 5688888988888887766654332
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..-.|++.+.+.|.+-+|-.++...+... ...+-++..+.+++....+.+.|++.|+.+.+..+
T Consensus 644 ----~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 644 ----PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred ----cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 56678888888888888888888887764 44667788888888888889999999998888877
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.68 Score=42.63 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=51.4
Q ss_pred HHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYS 116 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (619)
....+..|.++.|++.|..++. |+....+...+.++++.+.+..|++-+..++..+++... .|-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~--------------~yk 186 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK--------------GYK 186 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc--------------ccc
Confidence 3444556666666666666655 444444455556666666666666666666665554332 333
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.-..+-.-.|++++|...|....+.+..+
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhccccH
Confidence 33334444566666666666666555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.70 E-value=31 Score=34.26 Aligned_cols=176 Identities=10% Similarity=0.089 Sum_probs=100.6
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.+..-...++.++..+-.++-..++-.+++.-..... .+..+++.|... ..+.-..+++++.+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~km---------------al~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKM---------------ALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHH---------------HHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 44444555666677777777777777777776433322 677788888777 56677778887777
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc---------chHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC---------VYEFLMNGLLRKGVIENAFHMHRQVIQR-GFV 210 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 210 (619)
.... +...-..++..|- .++...+...|.++..+-.+ +|..+.... -.+.+.-+.+...+... |..
T Consensus 127 ~dfn-Dvv~~ReLa~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~ 202 (711)
T COG1747 127 YDFN-DVVIGRELADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEG 202 (711)
T ss_pred hcch-hHHHHHHHHHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccc
Confidence 6543 4444455555554 36777777777776543321 133332211 23444444444444333 333
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047659 211 PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINA 257 (619)
Q Consensus 211 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (619)
.-...+..+-.-|....++.+|.+++..+.+.+-+ |...-..++..
T Consensus 203 ~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 203 RGSVLMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 33344444556666677778888877777665332 44444444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.54 E-value=42 Score=35.55 Aligned_cols=60 Identities=13% Similarity=0.064 Sum_probs=33.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCC-c--CHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 526 YSAIIHGLFKGKNISVGLHMFKLMERNGVA-P--DIAIYN-----VLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 526 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
++.+...+. .|+..+..+..........+ | ....|. .+...+...|+.++|..+..+...
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333333344 67777766555443321111 2 334553 344457778999999988877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.26 E-value=20 Score=31.56 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=15.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMDLV 280 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~ 280 (619)
..-+..+++.+|+++|++.....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344566777788887777655333
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.6 Score=42.32 Aligned_cols=95 Identities=9% Similarity=-0.012 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+++...+..+++.++++.|..++..+++ |+...-+..-+.++.+.+++..|..-+.++++.+|....
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K----------- 73 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK----------- 73 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh-----------
Confidence 4455666667777778888888887777 445555555667777777888777777777777654333
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.|..-+.++.+.+.+.+|...|+.....
T Consensus 74 ---~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 74 ---AYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred ---eeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 4555556666667777777777777663
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.11 E-value=4.6 Score=29.64 Aligned_cols=45 Identities=7% Similarity=0.148 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 047659 506 SAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLME 550 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (619)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555666777777777777777777777777776655
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.41 E-value=6.6 Score=35.99 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=56.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYN---IKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSA 528 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 528 (619)
+..+...++..-....+++.++..+-.++..- ..|+... .+.++.+. .-++++++.++..=+..|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 44444455555555566666666665554321 1111111 12222222 2355677777776666777777777777
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 047659 529 IIHGLFKGKNISVGLHMFKLMER 551 (619)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~ 551 (619)
+|+.+.+.+++.+|..+.-.|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777776666554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.38 E-value=5.2 Score=36.20 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
.+......|..+|.+.+|.++.++.+..++- +...+..++..|+..|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455566788888888888888888877543 77778888888888888777777776654
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.25 E-value=25 Score=31.62 Aligned_cols=119 Identities=10% Similarity=-0.005 Sum_probs=58.3
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHH-ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLL-QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (619)
....+.|+++...++. |.+-.+|.-...++. -..++.+-...+++++..+|++.... .+...+
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvW------------HHRr~i-- 121 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVW------------HHRRVI-- 121 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHH------------HHHHHH--
Confidence 4455555555555554 333333322222221 12345555666666666666665422 111111
Q ss_pred HHHcCChh-hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 122 YVRIGKID-ESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 122 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.-..|++. .=+++...|+..+-+ +-.+|..---++..-+.++.=+....++++.+.
T Consensus 122 ve~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred HHHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 12223444 455666666654333 556666655555555566666666666665554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.99 E-value=26 Score=31.53 Aligned_cols=153 Identities=10% Similarity=0.090 Sum_probs=86.9
Q ss_pred HccCCchhHHHHHHHhhc-CCCCccH-----HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC--CCccc
Q 047659 43 IKTNNPTPAIQFFKWTHN-CVSSPNI-----AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG--DFGCD 114 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~-~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 114 (619)
++...+++|+.-|+.+.+ ++...-| ..++.+..+.|++++....|.+++.-.- +.+. .++..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk----------SAVTrNySEKs 107 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK----------SAVTRNYSEKS 107 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH----------HHHhccccHHH
Confidence 456689999999999988 5555444 3677889999999999999988876311 1111 12224
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhC-CCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHHhhC------------C
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDM-GIYLSPD----LVQRLMSCLVDSNSVGQYYKLCRAMRGK------------G 177 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~ 177 (619)
.+.++.......+.+--.++++.-++. .-..+.. +-..+...|...+.+.+...++.++... |
T Consensus 108 IN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKG 187 (440)
T KOG1464|consen 108 INSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKG 187 (440)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhcc
Confidence 555555555455555555555443321 0001222 3345667777777777666666655421 1
Q ss_pred c---cchHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 178 F---CVYEFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 178 ~---~~~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
. .+|..-++.|....+-.+-..++++.+
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 1 124444555555555555555555443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.88 E-value=39 Score=33.54 Aligned_cols=68 Identities=16% Similarity=-0.078 Sum_probs=46.7
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCcc
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN-SVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~ 179 (619)
+...|...+..+.+.+.+.+.-.+|..|+..+|. ++..|..-+.-...-+ +.+.|..+|.+.++.+|+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 3337777777777777788888888888877554 6677765554444333 377788888888877773
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.80 E-value=1 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHcCChhhHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFA 136 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~ 136 (619)
+...++..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777788888888877765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.79 E-value=14 Score=32.66 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=57.7
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHH
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~ 199 (619)
....+++.|+..|-+.+..+|. .+.-|..-+..+.+..+++.+..-..+.++..++. ...+..+......++.|+.
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3446778888888888775433 33455667777778888888888777777777743 6667777777777777777
Q ss_pred HHHHH
Q 047659 200 MHRQV 204 (619)
Q Consensus 200 ~~~~~ 204 (619)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 77766
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.34 E-value=3.8 Score=30.44 Aligned_cols=45 Identities=7% Similarity=0.116 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 047659 507 AILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMER 551 (619)
Q Consensus 507 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (619)
..+-++.+....+.|++....+.+.+|.+.+++..|.++++-...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444555555666666667777777777777777777666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.11 E-value=18 Score=33.36 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=69.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 047659 208 GFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG---PKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLI 284 (619)
Q Consensus 208 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 284 (619)
|.+....+-..++..-....+++.++..+-++.... ..|+ .+-.+.++.+.+ -+.++++.++..-.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 444455555556665556677788887777766421 1111 122233444433 35668888888888888889999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047659 285 IYSILIDGLFKAGRLKEGNELLLTALDRG 313 (619)
Q Consensus 285 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 313 (619)
++..+++.+.+.+++.+|..+.-.|..+.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999888888887776553
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.02 E-value=52 Score=34.27 Aligned_cols=181 Identities=16% Similarity=0.127 Sum_probs=108.9
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH-----hcCChhHHHHHHHHHhh-------CCc-cchHHHHHHHHhcC--
Q 047659 128 IDESVEIFAYMSDMGIYLSPDLVQRLMSCLV-----DSNSVGQYYKLCRAMRG-------KGF-CVYEFLMNGLLRKG-- 192 (619)
Q Consensus 128 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~-------~~~-~~~~~l~~~~~~~~-- 192 (619)
...|..+++...+.| +......+..+|. ...+.+.|+.+|+.+.+ .+. .....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 467888888887765 4455555554443 45678889999888876 442 23667777777643
Q ss_pred ---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCCHHH
Q 047659 193 ---VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI-NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFC--KEAKLEK 266 (619)
Q Consensus 193 ---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ 266 (619)
+.+.|..++....+.| .|+.......+..... ..+...|.+.|......|.. ....+..++-... ...+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 6677888888888887 4554433333322222 24567888888888877643 3322222222222 2346788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047659 267 AFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315 (619)
Q Consensus 267 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 315 (619)
|..+++..-+.| .|...--...+..+.. +..+.+.-.+..+.+.|..
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 888888888876 3332222223333333 6677777666666666543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.96 E-value=6.3 Score=34.05 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD--LVPDLIIYSILIDG 292 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~ 292 (619)
+..++.+.+.+++.+++.....-.+..+. |..+-..++..++-.|+|++|..-++..-... ..+...+|..+|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455666677777777777666655332 56666777777788888888877776665432 22334556666554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.91 E-value=2.6 Score=25.88 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
..|+.+|...|+.+.|.+++++++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357888889999999999998888643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.65 E-value=40 Score=32.60 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=36.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-------cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-------CVYEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
...+|..++....+.|+++.|...+.++...++ .+...-++.+-..|+..+|...++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566666666666666666666666655431 2244455666666666666666666655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.30 E-value=27 Score=30.41 Aligned_cols=62 Identities=5% Similarity=-0.105 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
...+..+.+.+.+.+|+...+.-.+..|. +......++..||-.|++++|..-++-+....|
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 34455667777888888877777766544 666677777888888888888777777666655
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.21 E-value=2.2 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=15.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 047659 564 LLNMLIKECNLDAALKLFGQLTDR 587 (619)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~ 587 (619)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.90 E-value=1.4 Score=24.98 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
+|..++..|...|++++|...|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6778888888899999999998888764
|
... |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=83.55 E-value=5.2 Score=29.42 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=39.2
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKID 129 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 129 (619)
|.+..+...++..+...|++++|.+.+-.++..++...+ +.+...++..+.-.|.-+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~------------~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED------------DAARKRLLDIFELLGPGD 75 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC------------CHHHHHHHHHHHHH-TT-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc------------cHHHHHHHHHHHHcCCCC
Confidence 788899999999999999999999999999998765422 124455555555555433
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.35 E-value=37 Score=31.20 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=28.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHccCChHHHHH
Q 047659 485 KPDVITHTVLIRGIASQGSLSSAILLFFQMLKR-GLTPDVITYSAIIHGLFKGKNISVGLH 544 (619)
Q Consensus 485 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 544 (619)
.++..+...++..++..+++.+-.++|+..... +..-|...|..+|+.....|+..-..+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 344444445555555555555555555544432 223344445555555555555443333
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.32 E-value=4.7 Score=40.26 Aligned_cols=105 Identities=13% Similarity=0.006 Sum_probs=74.0
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE 195 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~ 195 (619)
+-.+...|+...|..++..+.-..|.........++..+.+.|-.-+|-.++...+.... ++ +..+.+++....+++
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 333445688888888888887655554555566777777888877788888777666554 33 777778888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047659 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLC 224 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 224 (619)
.|++.|+++.+.. +.+...-+.|...-|
T Consensus 694 ~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 8888888888775 555566666554443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.12 E-value=3.5 Score=24.56 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 559 AIYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888999999999998888764
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.91 E-value=1.8 Score=23.56 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
..+..++..+...|+++.|...+++.++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4567788888899999999999988887654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.29 E-value=12 Score=29.10 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=20.5
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047659 546 FKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLT 585 (619)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (619)
+..+...++.|++.+...-+++|.+.+|+..|.++|+-++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.24 E-value=73 Score=33.79 Aligned_cols=181 Identities=13% Similarity=0.153 Sum_probs=104.5
Q ss_pred HHHHHHHhhc----CCCC--ccHHHHHHHHH-ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHH
Q 047659 51 AIQFFKWTHN----CVSS--PNIAQLIHVLL-QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYV 123 (619)
Q Consensus 51 A~~~~~~~~~----~~~~--~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (619)
|++.++.+.. +|.. .+...++.++. -..+++.|+..+++.+..... .+..+. +-. ....++..+.
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~-k~~------~~~ll~~i~~ 111 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDL-KFR------CQFLLARIYF 111 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHH-HHH------HHHHHHHHHH
Confidence 5677776663 2222 33356777777 678999999999999775432 111000 000 3445677777
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCHHhHHHHH-----HHHHhcCChhHHHHHHHHHhhCCc---cc----hHHHHHHHH--
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSPDLVQRLM-----SCLVDSNSVGQYYKLCRAMRGKGF---CV----YEFLMNGLL-- 189 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~l~~~~~-- 189 (619)
+.+... |...+++.++.--......|.... ..+...+++..|.+.++.+..... +. +..++.+..
T Consensus 112 ~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l 190 (608)
T PF10345_consen 112 KTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHL 190 (608)
T ss_pred hcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 776666 999999887642221122232222 222334788999999988665431 22 333333333
Q ss_pred hcCCHHHHHHHHHHHHHCCC---------CCChhhHHHHHHHHH--hcCCcchHHHHHHHHH
Q 047659 190 RKGVIENAFHMHRQVIQRGF---------VPNIVTCNKILKRLC--INGQIGNASSLFDVLL 240 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~ll~~~~--~~~~~~~A~~~~~~~~ 240 (619)
+.+..+.+.+.++.+..... .|...+|..+++.++ ..|+++.+...+..+.
T Consensus 191 ~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 191 RRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55667777777776644321 334556777766654 4566666666655443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.98 E-value=3.1 Score=40.52 Aligned_cols=94 Identities=6% Similarity=-0.060 Sum_probs=63.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
-+..+...+.++.|..+|.++++.+|+... .|..-..++.+.+++..|+.=+..+++..|. ....
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~--------------~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~ 74 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAI--------------YFANRALAHLKVESFGGALHDALKAIELDPT-YIKA 74 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCccee--------------eechhhhhheeechhhhHHHHHHhhhhcCch-hhhe
Confidence 345566778888888888888888776654 4455557788888888888888888776533 3344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
|..-+.++.+.+++.+|+..|+......|
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAP 103 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCc
Confidence 44445555555666666666666666655
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=81.96 E-value=21 Score=31.53 Aligned_cols=120 Identities=14% Similarity=0.094 Sum_probs=65.1
Q ss_pred ccCcccccccCChhhHHHHHHHH---------HccCCchhHHHHHHHhhc-------CCC--CccHHHHHHHHHccCChh
Q 047659 20 CSESKTHISDLQFNQANAILANL---------IKTNNPTPAIQFFKWTHN-------CVS--SPNIAQLIHVLLQSDMRD 81 (619)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~ 81 (619)
.+.....+..+++.....+.... .....+++|++.|.-+.- ++. ...+..++-++.-.|+.+
T Consensus 56 yA~~~~~F~~l~~~~~~~i~~~i~~~~~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~ 135 (214)
T PF09986_consen 56 YAAFEEDFEKLSPEQKEKIKENISSRWKPRDFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEE 135 (214)
T ss_pred CcccccccccCCHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHH
Confidence 33444445555555444443332 223455677777776554 111 223345666666777755
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhhcCCC----cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 82 VASHVFDKMVIQFGKTYNFFRLFRDSLGDF----GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.....+++++........ ....|.. ..+...++....+.|+.++|.+.|.+++..+-.
T Consensus 136 ~E~~fl~~Al~~y~~a~~-----~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 136 NEKRFLRKALEFYEEAYE-----NEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHHHHHH-----hCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 555555555443221111 0011111 115667778888899999999999999876433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.96 E-value=3.8 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLK 516 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 516 (619)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455555556666666666666655543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.56 E-value=4.9 Score=28.25 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=42.0
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFA 136 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 136 (619)
+...++.++|...++++++..+.+++.++ ++..|+++|...|++.+++.+--
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~-----------~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFR-----------VLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999998887666432 67788999999999998887653
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.43 E-value=8.7 Score=37.58 Aligned_cols=109 Identities=17% Similarity=0.063 Sum_probs=76.7
Q ss_pred ccCCchhHHHHHHHhhc---CC--------CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC-
Q 047659 44 KTNNPTPAIQFFKWTHN---CV--------SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF- 111 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~---~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 111 (619)
-.|+++.|.+++-..-. +. ....|+.++-++.+.|.+..+..+|.+++++... ++...+.+.
T Consensus 252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~------qL~~g~~~~~ 325 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS------QLRNGLKPAK 325 (696)
T ss_pred HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH------HHhccCCCCc
Confidence 37888888888765332 22 3445677888899999999999999999873221 222221111
Q ss_pred ---------cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047659 112 ---------GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD 159 (619)
Q Consensus 112 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (619)
-.+....+-.|...|++-.|.++|....+. ...+|..|..++.+|.-
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 114556677888899999999999998776 45588999999988863
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.90 E-value=58 Score=31.75 Aligned_cols=195 Identities=9% Similarity=-0.003 Sum_probs=106.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+|.++...+...+..|++.-...+...-. .++.+.-..-+-...-.|+-.+|.+.+..+-...- |.
T Consensus 80 dprNv~Aa~iy~lSGGnP~vlr~L~~~d~-~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l-------------~~ 145 (421)
T PRK12798 80 DPRNVDAALIYLLSGGNPATLRKLLARDK-LGNFDQRLADGALAYLSGRGREARKLLAGVAPEYL-------------PA 145 (421)
T ss_pred CccchhHHHhhHhcCCCHHHHHHHHHcCC-CChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhc-------------Cc
Confidence 56678888888888888877776666544 23333333333444467888888888777654321 11
Q ss_pred CcccHHHHHHHH-HHcCChhhHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc----
Q 047659 111 FGCDYSFLIENY-VRIGKIDESVEIFAYMSDMGIYLSP----DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV---- 180 (619)
Q Consensus 111 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~---- 180 (619)
.-..|..|+.+- ....++..|+.+|+...-. -|.. .....-+......|+.+++..+-.....+.. ++
T Consensus 146 ~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~ 223 (421)
T PRK12798 146 ELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQ 223 (421)
T ss_pred hhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHH
Confidence 111555665543 3456888888888887653 2332 2344444555677777777666555554433 22
Q ss_pred -hHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 181 -YEFLMNGLLRKGVIENAFHMHRQVIQR-GFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 181 -~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
+......+.+.++-..- +-+..++.. ....-...|..+...-.-.|+.+-|.-.-++....
T Consensus 224 F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 224 FAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 22222233332221111 112222222 11223445666666666677777766666665543
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.69 E-value=1.7 Score=40.10 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=74.2
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~ 198 (619)
....|.++.|++.|...++.++ +....+..-.+++.+.+.+..|++-+....+.++|. |-.-..+..-.|++++|.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 4557889999999999988743 366667778888889999999999999999999855 666666666789999999
Q ss_pred HHHHHHHHCCCCCChhhH
Q 047659 199 HMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~ 216 (619)
..+....+.++.+....|
T Consensus 203 ~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHhccccHHHHHH
Confidence 999998888765555444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.36 E-value=16 Score=31.46 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCCHHHH
Q 047659 265 EKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR---GLKLDVVVFSSVMDAYVGIGDVGRA 337 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a 337 (619)
+.|++.|-.+...+.--++.....|...| -..+.+++..++-...+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555444333333333333322 344555555555555432 2244555566666666655555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 85.3 bits (210), Expect = 3e-17
Identities = 87/581 (14%), Positives = 181/581 (31%), Gaps = 155/581 (26%)
Query: 85 HV-FDKMVIQFGKTYN-FFRLFRDSL-GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141
H+ F+ Q+ Y +F D+ +F C +++ + E ++
Sbjct: 6 HMDFETGEHQY--QYKDILSVFEDAFVDNFDCKD---VQDMPKSILSKEEIDH------- 53
Query: 142 GIYLSPDLVQ---RLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGL----LRKGVI 194
I +S D V RL L+ + +R Y+FLM+ + + ++
Sbjct: 54 -IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSMM 108
Query: 195 ENAFHMHRQVIQRG---FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTF 251
+ R + F V+ + +L LL + P NV+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL------------RQALLELRPAKNVLID 156
Query: 252 -------STLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLF--KAGRLKEG 302
+ + C K++ +F
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMD---------------------FKIFWLNLKNCNSP 195
Query: 303 NELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG 362
+L ++D ++S D I ++Q R L +L+
Sbjct: 196 ETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRL---LKSKPYENCLLV-- 249
Query: 363 L--CQQGRLVEA----CGLFGQVLI--------RRLEPSLLTYSSLID---GFCKSGKLR 405
L Q + A C ++L+ L + T+ SL +++
Sbjct: 250 LLNVQNAKAWNAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVK 304
Query: 406 DGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFF---FQSVRMTLIPNLFIFNTLMDG 462
Y + + L + + + ++ +++R + + + L T+++
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTIIES 361
Query: 463 CCRLKRATDTVKLFMLMGMYNIKPDV-ITHTVLIRGIASQGSLSSAILLFFQMLKRGLTP 521
+ + K+F + ++ P I +L L++F ++K
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFP--PSAHIPTILL-------------SLIWFDVIKS---- 402
Query: 522 DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLF 581
DV+ + LH + L+E+ I+I ++ L + +K N A L
Sbjct: 403 DVM-------------VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA---LH 446
Query: 582 GQLTDRGLEPDIITYNTIICGYCSLNSCL---IDGYFKSQI 619
+ D YN I + S + + +D YF S I
Sbjct: 447 RSIVDH--------YN-IPKTFDS-DDLIPPYLDQYFYSHI 477
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 3e-16
Identities = 36/223 (16%), Positives = 77/223 (34%), Gaps = 10/223 (4%)
Query: 382 RRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFF 441
RRL+ S + G + + S ++ + R L+ SL +
Sbjct: 62 RRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDV------EQAPS 115
Query: 442 FQSVRMTLIPNLFIFNTLMDGCC---RLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGI 498
Q + L C +L A + + + + ++ G
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 499 ASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFK-GKNISVGLHMFKLMERNGVAPD 557
A QG+ + + F + GLTPD+++Y+A + + + ++ + M + G+
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 558 IAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTII 600
VLL+ + L A K+ + P + + ++
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.5 bits (168), Expect = 2e-12
Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 9/185 (4%)
Query: 312 RGLKLDVVVFSSVMDAYVGIGDVGRA---VQTYDRMLNGGFLPNVISYSILIKGLCQQGR 368
L + + + A + + L + Y+ ++ G +QG
Sbjct: 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA 180
Query: 369 LVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLY-DNMIKRGLKPDAVVCS 427
E + V L P LL+Y++ + + + + M + GLK A+ +
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240
Query: 428 LLIN----GLMGDALRFFFQSVRMTLI-PNLFIFNTLMDGCCRLKRATDTVKLFMLMGMY 482
+L++ + A+ + + P + L+ KL + +
Sbjct: 241 VLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
Query: 483 NIKPD 487
+
Sbjct: 301 QCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.5 bits (155), Expect = 7e-11
Identities = 24/197 (12%), Positives = 61/197 (30%), Gaps = 4/197 (2%)
Query: 181 YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVL- 239
L+ K ++ Q Q K + Q+ A L V
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 240 --LLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAG 297
+ ++ ++ + ++ ++ + ++ + L PDL+ Y+ + + +
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 298 RLKEG-NELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISY 356
+ L GLKL + + ++ + + LP ++
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 357 SILIKGLCQQGRLVEAC 373
S L++ + + V
Sbjct: 275 SKLLRDVYAKDGRVSYP 291
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 1e-10
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 3/114 (2%)
Query: 494 LIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMER-- 551
L++ + SL Q + L+ A + + H+ +
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 552 -NGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYC 604
+ +YN ++ ++ + + + D GL PD+++Y +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 619 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.44 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.34 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.33 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.31 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.29 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.28 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.25 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.24 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.24 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.24 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.23 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.23 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.18 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.18 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.14 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.13 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.12 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.09 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.06 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.06 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.06 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.04 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.03 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.02 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.01 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.97 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.95 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.92 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.92 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.92 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.91 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.91 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.87 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.86 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.86 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.85 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.83 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.83 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.83 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.82 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.81 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.81 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.8 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.78 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.78 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.78 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.77 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.74 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.73 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.73 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.72 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.7 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.7 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.68 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.67 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.65 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.63 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.63 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.57 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.57 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.54 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.52 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.5 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.49 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.49 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.46 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.43 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.4 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.38 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.37 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.36 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.36 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.36 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.31 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.31 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.28 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.26 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.22 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.21 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.15 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.1 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.08 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.03 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.96 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.93 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.92 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.86 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.85 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.65 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.65 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.44 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.3 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.26 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.15 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.14 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.07 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.92 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.73 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.72 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.71 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.4 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.4 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.11 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.81 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.8 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.76 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.67 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.58 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.56 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.56 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.51 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.35 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.09 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.65 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.19 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.91 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.3 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.19 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.14 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.14 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.1 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.07 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.28 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.36 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.04 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.67 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.52 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.51 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.43 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.34 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.82 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 83.85 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.13 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 82.03 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.73 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 81.24 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.93 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=340.33 Aligned_cols=501 Identities=10% Similarity=0.013 Sum_probs=406.6
Q ss_pred cCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR 124 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (619)
.|.+..+...+.... .++...|..++..+.+.|++++|...|++++...|++. .+..++.+|.+
T Consensus 66 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------------~~~~l~~~~~~ 129 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS-LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPN---------------DAFWLAQVYCC 129 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHH---------------HHHHHHHHHHH
T ss_pred cCccCCCCCccccch-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCch---------------HHHHHHHHHHH
Confidence 444555555555443 35567788999999999999999999999998777542 67789999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC----------------c---cchHHHH
Q 047659 125 IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG----------------F---CVYEFLM 185 (619)
Q Consensus 125 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------~---~~~~~l~ 185 (619)
.|++++|+.+|+.+... ++++.+++.++.+|.+.|++++|+++|+++.... + .+|..++
T Consensus 130 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (597)
T 2xpi_A 130 TGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207 (597)
T ss_dssp TTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHH
Confidence 99999999999988653 5688999999999999999999999999644433 1 2388999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHH--HH-HHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNAS--SL-FDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
.+|.+.|++++|.++|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...++.+...+|+.++..|.+.|
T Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 208 QVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999998875 445556666655443332222111 11 444444444455666777788899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 047659 263 KLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 263 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
++++|.++|+.+.+. +++..++..++..+.+.|++++|.++|+++.+.+.. +..+++.++.++.+.|++++|.++++
T Consensus 287 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 287 ELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998875 579999999999999999999999999999987644 77889999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047659 343 RMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 422 (619)
++.+.. +.+..++..++..|.+.|++++|.++|+.+.+... .+..+|+.++..|.+.|++++|..+|+++.+.+ |
T Consensus 364 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~- 438 (597)
T 2xpi_A 364 DLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--Q- 438 (597)
T ss_dssp HHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--T-
T ss_pred HHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-
Confidence 998653 45788999999999999999999999999987632 367899999999999999999999999988752 2
Q ss_pred HhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047659 423 AVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQG 502 (619)
Q Consensus 423 ~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 502 (619)
.+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.+.|
T Consensus 439 ----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 439 ----------------------------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp ----------------------------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred ----------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 266789999999999999999999999998764 557899999999999999
Q ss_pred CHHHHHHHHHHHHHC----CCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 047659 503 SLSSAILLFFQMLKR----GLTPD--VITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDA 576 (619)
Q Consensus 503 ~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 576 (619)
++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 999999999999875 66787 7899999999999999999999999999864 3488999999999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHh
Q 047659 577 ALKLFGQLTDRGLEP-DIITYNTIICGYC 604 (619)
Q Consensus 577 A~~~~~~~~~~g~~p-~~~~~~~ll~~~~ 604 (619)
|.+.++++.+ +.| +...+..+...|.
T Consensus 569 A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 569 AITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 9999999998 456 4667766666554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=332.22 Aligned_cols=484 Identities=10% Similarity=0.009 Sum_probs=406.4
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
+...+..++..+.+.|++++|+.+|+.+.. .++..++..++.++.+.|++++|...|++++.. +.+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---------- 151 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSA---------- 151 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHH----------
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchh----------
Confidence 445678899999999999999999999987 556688899999999999999999999998643 22222
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC---------------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG---------------IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+++.++.+|.+.|++++|+++|+++.... .+++..+|+.++.+|.+.|++++|++.|+++.
T Consensus 152 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 152 ----CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999999643221 12357899999999999999999999999999
Q ss_pred hCCccc---hHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCh
Q 047659 175 GKGFCV---YEFLMNGLLRKGVIENAFH--M-HRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNV 248 (619)
Q Consensus 175 ~~~~~~---~~~l~~~~~~~~~~~~A~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 248 (619)
+.+|+. +..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++... +++.
T Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 305 (597)
T 2xpi_A 228 MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSS 305 (597)
T ss_dssp HHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCH
T ss_pred HhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchH
Confidence 988843 5555554443333222221 1 444454444555666777788899999999999999999765 4789
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047659 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 328 (619)
.+|+.++.+|.+.|++++|.++|+.+.+.+.. +..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++..|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 99999999999999999999999999986543 77889999999999999999999999999764 44789999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 047659 329 VGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGF 408 (619)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 408 (619)
.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998753 34688999999999999999999999999988743 37788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhC----CC
Q 047659 409 SLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMY----NI 484 (619)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 484 (619)
.+|+.+.+. .|+ +..+|+.++..|.+.|++++|.++|+++.+. +.
T Consensus 462 ~~~~~~~~~--~~~-----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 462 EYLQSSYAL--FQY-----------------------------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHHHHHH--CCC-----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHh--CCC-----------------------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 999999875 232 6778999999999999999999999998765 55
Q ss_pred CCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHH
Q 047659 485 KPD--VITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYN 562 (619)
Q Consensus 485 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 562 (619)
.|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.. +.+...+.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 588 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASD 588 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHH
Confidence 777 7899999999999999999999999999864 4588999999999999999999999999999853 22566666
Q ss_pred HHHHHH
Q 047659 563 VLLNML 568 (619)
Q Consensus 563 ~l~~~~ 568 (619)
.+...|
T Consensus 589 ~l~~~~ 594 (597)
T 2xpi_A 589 LLKRAL 594 (597)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-28 Score=243.07 Aligned_cols=359 Identities=16% Similarity=0.097 Sum_probs=322.8
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
+...+.+.|++++|++.++.+.. |.+...+..++.++.+.|++++|...++.++..+|.... +|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~--------------~~ 70 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE--------------AY 70 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH--------------HH
Confidence 34567789999999999999887 888888999999999999999999999999999888766 89
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKG 192 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~ 192 (619)
..++..|.+.|++++|+..|+++++..|. ++.++..++.++.+.|++++|++.|+++.+.+|+. +..+...+...|
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc
Confidence 99999999999999999999999987654 77889999999999999999999999999999833 788889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
++++|.+.++++++.. +.+..+|..+...+...|++++|...|+++...++. +...|..+...+...|++++|...|+
T Consensus 150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999885 566889999999999999999999999999987543 67789999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 047659 273 LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPN 352 (619)
Q Consensus 273 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (619)
........ +..++..+..++...|++++|.+.++++.+.+.. +..++..+...+.+.|++++|.+.|+++.+.. +.+
T Consensus 228 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 304 (388)
T 1w3b_A 228 RALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTH 304 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccc
Confidence 99876432 6788999999999999999999999999987543 67889999999999999999999999998863 568
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 353 VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 353 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
..++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8899999999999999999999999998763 335778999999999999999999999999875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=8.2e-28 Score=237.20 Aligned_cols=326 Identities=17% Similarity=0.117 Sum_probs=197.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
++..+.+.|++++|...+++++..+|.+.. .+..+...+.+.|++++|...++..++..|. ++.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~--------------~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~ 69 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTG--------------VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEA 69 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHH
Confidence 456677788888888888888887777665 6667777788888888888888887776543 6777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCcc---chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGFC---VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN 226 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 226 (619)
|..++.++.+.|++++|++.|+++.+..|+ .+..++.++...|++++|.+.++.+++.. +.+...+..+...+...
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence 888888888888888888888777766662 26666666666666666666666666653 33344455555666666
Q ss_pred CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047659 227 GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELL 306 (619)
Q Consensus 227 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 306 (619)
|++++|.+.|+++....+. +..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|...+
T Consensus 149 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666554222 3455666666666666666666666666554322 3455555555555566666666665
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047659 307 LTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEP 386 (619)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 386 (619)
++.....+. +..++..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|.+.++.+.+.. +.
T Consensus 227 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 303 (388)
T 1w3b_A 227 LRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT 303 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 555554322 44555555555555555555555555555432 2234445555555555555555555555554442 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047659 387 SLLTYSSLIDGFCKSGKLRDGFSLYDNMIK 416 (619)
Q Consensus 387 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 416 (619)
+..++..+...+.+.|++++|...++++.+
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555555443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=253.81 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 047659 469 ATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKL 548 (619)
Q Consensus 469 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 548 (619)
.++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 56677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 047659 549 MERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN 607 (619)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 607 (619)
|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.|+..|++.+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 88888888888888888888888888888888888888888888888888888877644
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-29 Score=247.90 Aligned_cols=206 Identities=12% Similarity=0.141 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---------HH
Q 047659 196 NAFHMHRQVIQRGFVPNI-VTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK---------LE 265 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 265 (619)
.+..+.+.+.+.+....+ ..++.+|+.|++.|++++|.++|++|.+.|+.||..+||++|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455566666554443 35788889999999999999999999999999999999999998886654 68
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047659 266 KAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRML 345 (619)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (619)
.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047659 346 NGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKS 401 (619)
Q Consensus 346 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 401 (619)
+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-23 Score=215.89 Aligned_cols=436 Identities=11% Similarity=-0.002 Sum_probs=257.2
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+...+..+.+.|++++|...|++++..+|+ .. ++..++.+|.+.|++++|+..|+++++.+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 71 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKED-PV--------------FYSNLSACYVSVGDLKKVVEMSTKALELKPD 71 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-HH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-HH--------------HHHhHHHHHHHHhhHHHHHHHHHHHhccChH
Confidence 44566677777777777777777777776653 22 6677777777777777777777777776543
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
++.++..++.++...|++++|+..|+++.+.+| +. ....+..+........+.+.+..+...+..|+......-..
T Consensus 72 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 72 -YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence 667777777777777777777777777777666 11 33333333333323333333322222111111111111111
Q ss_pred HHHhcCCcchHHHHHHHHHhCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC----
Q 047659 222 RLCINGQIGNASSLFDVLLLVGP---------KPNVVTFSTLINAFCK---EAKLEKAFQLYNLMME-----MDLV---- 280 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~---- 280 (619)
.............+...+..... +.+...+......+.. .|++++|...|+.+.+ ....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence 11111122222222111111111 1123344444444443 7788888888887776 3111
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 047659 281 ----PDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISY 356 (619)
Q Consensus 281 ----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (619)
.+..++..+...+...|++++|...++.+.+.+.. ...+..+...+...|++++|...++++.+.. +.+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 307 (514)
T 2gw1_A 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHH
Confidence 12445666777777778888888888777776433 6677777777777777777777777777653 3355667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHH
Q 047659 357 SILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGD 436 (619)
Q Consensus 357 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 436 (619)
..+...+...|++++|...++.+...... +...+..+...+.+.|++++|...++.+.+. .|+
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-------------- 370 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPE-------------- 370 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STT--------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--ccc--------------
Confidence 77777777777777777777777765433 4456666777777777777777777776654 121
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHh---cCCHHHHH
Q 047659 437 ALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNI-KPD----VITHTVLIRGIAS---QGSLSSAI 508 (619)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~A~ 508 (619)
+...+..+...+...|++++|...++.+..... .++ ...+..+...+.. .|++++|.
T Consensus 371 ---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 371 ---------------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp ---------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 344566667777777777777777776654321 111 2266666777777 77777777
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 047659 509 LLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERN 552 (619)
Q Consensus 509 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (619)
..++++.+.. +.+..++..+...+...|++++|.+.++++.+.
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7777776642 334566667777777777777777777777664
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-24 Score=217.67 Aligned_cols=441 Identities=11% Similarity=0.039 Sum_probs=327.2
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
.+..++..+.+.|++++|+..|+++++.+ |++.++..++.++.+.|++++|+..++++.+.+| +. +..++.++..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999865 5899999999999999999999999999999988 33 8899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
.|++++|...|+.+.+.+ +++......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999986 4555555555555544333333333332222211122222111111111111111111111
Q ss_pred HHHHHhCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----c--CC------CCCHHHHHHHH
Q 047659 271 YNLMMEMDL---------VPDLIIYSILIDGLFK---AGRLKEGNELLLTALD-----R--GL------KLDVVVFSSVM 325 (619)
Q Consensus 271 ~~~m~~~~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~~ll 325 (619)
...+..... +.+...+......+.. .|++++|...++++.+ . .. +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111211111 1124445555555554 8999999999999987 3 11 22456788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 047659 326 DAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLR 405 (619)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 405 (619)
..+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+...... +...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999998864 44888889999999999999999999999876433 5667888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 047659 406 DGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIK 485 (619)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 485 (619)
+|...++.+.+. .|+ +...+..+...+...|++++|...++.+.... +
T Consensus 322 ~A~~~~~~~~~~--~~~-----------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 369 (514)
T 2gw1_A 322 QAGKDFDKAKEL--DPE-----------------------------NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-P 369 (514)
T ss_dssp HHHHHHHHHHHT--CSS-----------------------------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHHh--Chh-----------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-c
Confidence 999999998875 232 45677888899999999999999999987753 4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHc---cCChHHHHHHHHHHHHCCCCcC
Q 047659 486 PDVITHTVLIRGIASQGSLSSAILLFFQMLKRGL-TPD----VITYSAIIHGLFK---GKNISVGLHMFKLMERNGVAPD 557 (619)
Q Consensus 486 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 557 (619)
.+...+..+...+...|++++|...++++.+... .++ ...+..+...+.. .|++++|.+.++.+.+.. +.+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 448 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRS 448 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTC
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-ccc
Confidence 4677889999999999999999999999987421 111 3378899999999 999999999999998853 336
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047659 558 IAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIIT 595 (619)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 595 (619)
..++..+...+.+.|++++|.+.++++.+ +.|+...
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 484 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEE 484 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHH
Confidence 77899999999999999999999999998 4566443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-23 Score=216.26 Aligned_cols=434 Identities=9% Similarity=0.009 Sum_probs=264.5
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+..++..+.+.|++++|...|++++..+|.+.. ++..++.+|.+.|++++|++.|+++++.+|
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p 90 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV--------------FYSNISACYISTGDLEKVIEFTTKALEIKP 90 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345566666677777777777777777776666554 666667777777777777777777766554
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHH
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGF--VPNIVTCNKILK 221 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~ 221 (619)
. ++.++..++.++...|++++|+..|+ .....|+.....+..+...+....|...++.+..... .+........+.
T Consensus 91 ~-~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 91 D-HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred c-hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 3 56666667777777777777777764 4444443322223344444455666666666654310 001111122233
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCChh-hHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCC-------HHH
Q 047659 222 RLCINGQIGNASSLFDVLLLVGPKPNVV-TFSTLINAFC--------KEAKLEKAFQLYNLMMEMDLVPD-------LII 285 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~a~~~~~~m~~~~~~~~-------~~~ 285 (619)
.+....+.+.+...+..... ..+... ....+...+. ..|++++|..+|+.+.+.... + ..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~ 245 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALA 245 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHH
Confidence 33334444333333222211 111111 1222222211 124677777777777765322 2 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047659 286 YSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQ 365 (619)
Q Consensus 286 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 365 (619)
+..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 5556666777788888888888887763 346777777777888888888888888777653 3356777778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHH
Q 047659 366 QGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSV 445 (619)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~ 445 (619)
.|++++|...++.+...... +...+..+...+.+.|++++|...++.+.+. .|+
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~----------------------- 376 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT----------------------- 376 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------
Confidence 88888888888887776433 4556777778888888888888888877765 232
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-----CCCHhhHHHHHHHHHhc----------CCHHHHHHH
Q 047659 446 RMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNI-----KPDVITHTVLIRGIASQ----------GSLSSAILL 510 (619)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~ 510 (619)
+...+..+...+...|++++|...++.+.+... ......+......+... |++++|...
T Consensus 377 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 377 ------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp ------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred ------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 445667777788888888888888887654320 11112233444556666 888888888
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 047659 511 FFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERN 552 (619)
Q Consensus 511 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (619)
|+++.+.. +.+...+..+..+|...|++++|.+.++++.+.
T Consensus 451 ~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 451 LTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88887753 345677888888888888888888888888774
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-23 Score=205.68 Aligned_cols=314 Identities=10% Similarity=0.014 Sum_probs=223.9
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...+..++..+.+.|++++|...|++++..+|.+.. ++..++.+|...|++++|+..|+++++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI--------------AYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555666666666666666666666666666555444 566666666666666666666666666
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-----c-hHH------------HHHHHHhcCCHHHHHHHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-----V-YEF------------LMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-~~~------------l~~~~~~~~~~~~A~~~~~ 202 (619)
.++. ++.++..++.+|.+.|++++|+..|+++.+.+|+ . +.. +...+...|++++|...++
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5433 5566666666666666666666666666666551 1 222 2445778888888888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD 282 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 282 (619)
.+.+.. +.+...+..+..+|...|++++|.+.|+++....+ .+..+|..+...|...|++++|.+.|+.+...... +
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-H 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-h
Confidence 888775 56777888888888888888888888888876533 36778888888888888999998888888765322 3
Q ss_pred HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 283 LIIYSIL------------IDGLFKAGRLKEGNELLLTALDRGLKLD----VVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 283 ~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
...+..+ ...+...|++++|...++++.+.... + ..++..+...+.+.|++++|...++++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444 77788889999999999998876432 2 34777888888999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047659 347 GGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLI 395 (619)
Q Consensus 347 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 395 (619)
.. +.+...+..+..+|...|++++|...++.+.+.... +...+..+.
T Consensus 324 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 324 ME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 52 346788888899999999999999999988875322 344444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-23 Score=211.07 Aligned_cols=434 Identities=11% Similarity=0.026 Sum_probs=333.2
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
++.+......+.+.|++++|+..|+.+.. |.++.++..++.++.+.|++++|...|++++..+|.+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------- 94 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK---------- 94 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHH----------
Confidence 45667788888999999999999999988 889999999999999999999999999999999988776
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc------cchHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF------CVYEF 183 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~ 183 (619)
++..++.++...|++++|+..|+ .....+.+ ....+..+...+....|...++.+....| .+...
T Consensus 95 ----~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 165 (537)
T 3fp2_A 95 ----ALLRRASANESLGNFTDAMFDLS-VLSLNGDF----DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165 (537)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence 88999999999999999999997 44433322 22234455566667889999999988755 12556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHh--------cCCcchHHHHHHHHHhCCCCCC------h
Q 047659 184 LMNGLLRKGVIENAFHMHRQVIQRGFVPNIV-TCNKILKRLCI--------NGQIGNASSLFDVLLLVGPKPN------V 248 (619)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~--------~~~~~~A~~~~~~~~~~~~~~~------~ 248 (619)
.+..+....+.+.+...+...... .+... ....+...+.. .|++++|..+++++.+..+... .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 243 (537)
T 3fp2_A 166 SLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH
Confidence 666677777777766555443322 22211 23333333222 2578999999999987644311 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047659 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 328 (619)
.++..+...+...|++++|.+.|+.+.+. .|+..++..+...+...|++++|...++++.+.... +..++..+...+
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 320 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHH
Confidence 34667778888999999999999999985 456888889999999999999999999999987644 788999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 047659 329 VGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGF 408 (619)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 408 (619)
...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998764 335678889999999999999999999999887433 5667888999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------CChhHHHHHHHH
Q 047659 409 SLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRL----------KRATDTVKLFML 478 (619)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~ 478 (619)
..++.+.+.. |+.. ........+......+... |++++|...++.
T Consensus 399 ~~~~~a~~~~--~~~~-----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 399 KQYDIAKRLE--EVQE-----------------------KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp HHHHHHHHHH--HHCS-----------------------SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--Ccch-----------------------hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 9999987642 1100 0011222344455667777 999999999999
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 479 MGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKR 517 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 517 (619)
..+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 454 a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 454 ACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88764 456788999999999999999999999999975
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-22 Score=204.92 Aligned_cols=309 Identities=12% Similarity=0.036 Sum_probs=265.9
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+..+...+.+.|++++|+..|+.+.. |.+..++..++.++...|++++|...|++++..+|....
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------- 95 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA--------- 95 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---------
Confidence 455677888888999999999999999887 788899999999999999999999999999999887766
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH---HhHHHH------------HHHHHhcCChhHHHHHHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP---DLVQRL------------MSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~ 173 (619)
++..++.+|.+.|++++|...|+++.+..+. +. ..+..+ +..+.+.|++++|+..|+++
T Consensus 96 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 96 -----ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8899999999999999999999999987544 44 555555 45589999999999999999
Q ss_pred hhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh
Q 047659 174 RGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVT 250 (619)
Q Consensus 174 ~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 250 (619)
.+..| +. +..++.++...|++++|.+.++.+.+.. +.+..++..+...|...|++++|...|+++....+. +...
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 247 (450)
T 2y4t_A 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 247 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHH
Confidence 99888 33 8899999999999999999999999875 667889999999999999999999999999876433 4444
Q ss_pred HHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047659 251 FSTL------------INAFCKEAKLEKAFQLYNLMMEMDLVPD-----LIIYSILIDGLFKAGRLKEGNELLLTALDRG 313 (619)
Q Consensus 251 ~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 313 (619)
+..+ ...+...|++++|.+.|+.+.+.. |+ ...+..+..++.+.|++++|...++.+.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5444 788999999999999999998853 44 4478888999999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047659 314 LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILI 360 (619)
Q Consensus 314 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 360 (619)
. .+...+..+..+|...|++++|...++++.+.. +-+...+..+.
T Consensus 326 p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 326 P-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 3 378999999999999999999999999999853 22455555555
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-20 Score=182.30 Aligned_cols=313 Identities=10% Similarity=0.002 Sum_probs=168.5
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
++.+..+...+...|++++|+..|+.+.. |.++.++..++.++...|++++|...+++++..+|....
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------- 72 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA---------- 72 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch----------
Confidence 34455556666667777777777776665 556666666777777777777777777777766665544
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY--LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNG 187 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 187 (619)
++..++..+...|++++|...|+++.+..+. .++..+..+...+... .+..+...
T Consensus 73 ----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~ 129 (359)
T 3ieg_A 73 ----ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ-------------------RLRSQALD 129 (359)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH
T ss_pred ----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH-------------------HHHHHHHH
Confidence 5666666777777777777777777665431 1333443331110000 00111334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 267 (619)
+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++....+ .+..++..+...+...|++++|
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 444555555555555554443 33444445555555555555555555555544322 2344455555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcC
Q 047659 268 FQLYNLMMEMDLVPDLIIYS------------ILIDGLFKAGRLKEGNELLLTALDRGLKLDV----VVFSSVMDAYVGI 331 (619)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~ 331 (619)
.+.|+...+.... +...+. .+...+.+.|++++|...++.+.+.... +. ..+..+...+...
T Consensus 208 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHc
Confidence 5555555443211 222211 2244455666666666666666654322 22 1233455566666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 332 GDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
|++++|...+++..+.. +.+..++..+...+...|++++|...++.+.+.
T Consensus 286 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666542 235556666666666666666666666666654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-20 Score=179.43 Aligned_cols=316 Identities=11% Similarity=0.044 Sum_probs=251.8
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
+..+..++..+...|++++|...|++++..+|.... ++..++..+...|++++|+..|+++.+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 68 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI--------------AYYRRATVFLAMGKSKAALPDLTKVIALKM 68 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 456777888888888888888888888888777665 778888888888888888888888887654
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
. ++..+..++.++...|++++|+..|+++.+..| +. +..+..... ...+.
T Consensus 69 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~ 124 (359)
T 3ieg_A 69 D-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLR 124 (359)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHH
T ss_pred C-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHH
Confidence 4 677888888888888888888888888887766 32 222211110 11234
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAG 297 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 297 (619)
.+...+...|++++|.+.++++....+ .+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 456788899999999999999988744 367889999999999999999999999999874 337889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 047659 298 RLKEGNELLLTALDRGLKLDVVVFS------------SVMDAYVGIGDVGRAVQTYDRMLNGGFLPNV----ISYSILIK 361 (619)
Q Consensus 298 ~~~~a~~~~~~~~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~ 361 (619)
++++|...++...+.... +...+. .+...+...|++++|...++++.+... .+. ..+..+..
T Consensus 203 ~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHH
Confidence 999999999999987543 444333 236678999999999999999988532 233 23556778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 047659 362 GLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV 424 (619)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 424 (619)
.+...|++++|...++...+.. +.+...+..+...+.+.|++++|...++...+. .|+..
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~ 340 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQ 340 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCh
Confidence 8999999999999999998873 236788999999999999999999999999886 45533
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-20 Score=175.82 Aligned_cols=284 Identities=10% Similarity=-0.051 Sum_probs=141.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.++..+..++..+...|++++|...|++++..+|.+.. .+..++..+...|++++|...++++.+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~~~ 84 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--------------CLPVHIGTLVELNKANELFYLSHKLVD 84 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--------------THHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------------hHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555444433 344444445555555555555555544
Q ss_pred CCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSN-SVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 216 (619)
..+. ++..+..++..+...| ++++|+..|+++.+..| +. +..+..++...|++++|.+.++.+.+.. +.+...+
T Consensus 85 ~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 162 (330)
T 3hym_B 85 LYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPM 162 (330)
T ss_dssp HCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHH
T ss_pred hCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHH
Confidence 4322 3444555555555555 45555555555554444 11 4445555555555555555555555443 2233444
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHH
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD--------LVPDLIIYSI 288 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~ 288 (619)
..+...+...|++++|.+.++++....+ .+...+..+...+...|++++|...++.+.+.. .+....++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 4455555555555555555555554322 234455555555555555555555555554321 0222345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047659 289 LIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGL 363 (619)
Q Consensus 289 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 363 (619)
+..++...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 555555556666666666555554322 44555555555566666666666665555432 22444444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-19 Score=171.98 Aligned_cols=287 Identities=10% Similarity=-0.032 Sum_probs=240.3
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+......+...|++++|+++|+.+.. |.+...+..++.++...|++++|...+++++..+|.+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------- 91 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV--------- 91 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH---------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH---------
Confidence 566778888888889999999999999887 778888888999999999999999999999998887766
Q ss_pred CCCcccHHHHHHHHHHcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-c--hHHH
Q 047659 109 GDFGCDYSFLIENYVRIG-KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-V--YEFL 184 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~l 184 (619)
++..++..+...| ++++|...|+++.+..+. ++..+..++.++...|++++|+..++++.+..|+ . +..+
T Consensus 92 -----~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 165 (330)
T 3hym_B 92 -----SWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165 (330)
T ss_dssp -----HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred -----HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 7888999999999 999999999999887654 6788899999999999999999999999888872 2 7778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC--------CCChhhHHHHHH
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP--------KPNVVTFSTLIN 256 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~ 256 (619)
...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++..... +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 889999999999999999998875 66778888899999999999999999998876421 334568888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHH
Q 047659 257 AFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY-VGIGDVG 335 (619)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~ 335 (619)
.+...|++++|.+.|+...+.... +..++..+..++...|++++|.+.++++.+.... +...+..+..++ ...|+.+
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 999999999999999998876433 6778888999999999999999999988876433 677777777777 4555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-17 Score=166.53 Aligned_cols=329 Identities=12% Similarity=0.036 Sum_probs=219.8
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHHHc----cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH--
Q 047659 51 AIQFFKWTHNCVSSPNIAQLIHVLLQ----SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR-- 124 (619)
Q Consensus 51 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 124 (619)
++..++....+.++.+...++..+.. .+++++|...|+++.+. .+.+ ++..|+..|..
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~--------------a~~~Lg~~y~~g~ 89 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTP--------------AEYVLGLRYMNGE 89 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH--------------HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHH--------------HHHHHHHHHHcCC
Confidence 45555555557788888888888887 88999999999998875 2233 77788888888
Q ss_pred --cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCC
Q 047659 125 --IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGV 193 (619)
Q Consensus 125 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~ 193 (619)
.+++++|...|++..+.+ ++..+..+...|.. .+++++|+.+|++..+.+. +.+..+...|.. .++
T Consensus 90 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 90 GVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 889999999999888754 67788888888887 7788888888888877665 447777777776 677
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK----EAKLE 265 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 265 (619)
+++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++++
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 888888888877765 56667777777766 677777777777776643 44556666666664 66777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CCHHH
Q 047659 266 KAFQLYNLMMEMDLVPDLIIYSILIDGLFK----AGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGI-----GDVGR 336 (619)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~ 336 (619)
+|.+.|+...+.| +...+..+...+.. .++.++|...|++..+.| +...+..+...|... +++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 7777777776643 34455555555555 566677777776666543 444555555555555 56666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 047659 337 AVQTYDRMLNGGFLPNVISYSILIKGLCQQG---RLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCK----SGKLRDGFS 409 (619)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~ 409 (619)
|...|++..+.| +...+..+...|...| ++++|.+.|+...+.+ +...+..+...|.. .+++++|..
T Consensus 315 A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 315 AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 666666666543 3444555555554444 4555666665555542 34444455555554 455555555
Q ss_pred HHHHHHH
Q 047659 410 LYDNMIK 416 (619)
Q Consensus 410 ~~~~~~~ 416 (619)
.|+...+
T Consensus 389 ~~~~A~~ 395 (490)
T 2xm6_A 389 WMRKAAE 395 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-16 Score=166.86 Aligned_cols=406 Identities=11% Similarity=0.096 Sum_probs=235.1
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhcCC-----CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCV-----SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR 102 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 102 (619)
...+|+.+...+..++..|.+.+|+++++.+...+ +...-..++....+. +..+...+.++.-..
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--------- 1050 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--------- 1050 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---------
Confidence 45688888889999999999999999999887521 122223343333333 223333333332211
Q ss_pred HHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchH
Q 047659 103 LFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYE 182 (619)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 182 (619)
....++..+...|.+++|..+|++.. . ...+...++ ...+++++|.++.+++ ..+.+|.
T Consensus 1051 -----------d~~eIA~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWs 1109 (1630)
T 1xi4_A 1051 -----------DAPDIANIAISNELFEEAFAIFRKFD----V-NTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWS 1109 (1630)
T ss_pred -----------cHHHHHHHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHH
Confidence 23345666667777777777777652 1 222222222 2556677777766655 1234477
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
.+++++...|++++|.+.|.+. .|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 7777777777777777776443 356666667777777777777777777666543 23223334666677776
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 047659 263 KLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 263 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
++++...+. + .++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.++
T Consensus 1182 rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 666433332 1 234455556667777777777777777664 356677777777777777777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047659 343 RMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 422 (619)
+. .+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... .-.
T Consensus 1246 KA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH 1313 (1630)
T 1xi4_A 1246 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAH 1313 (1630)
T ss_pred Hh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhH
Confidence 55 25566777777777777777766655432 2244555666777777777777777776655432 111
Q ss_pred HhhH--HHHHhc-----cHHHHHHHHHHHHhCCC----CCCHhhHHHHHHHHHhcCChhHHHHHHH-------------H
Q 047659 423 AVVC--SLLING-----LMGDALRFFFQSVRMTL----IPNLFIFNTLMDGCCRLKRATDTVKLFM-------------L 478 (619)
Q Consensus 423 ~~~~--~~ll~~-----~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------------~ 478 (619)
...+ -..+.. .+.++.+.|........ .-+...|..++..|.+.|+++.|....- .
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~ 1393 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD 1393 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHH
Confidence 1112 111111 44444444443332100 1155678888888999999988873322 1
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcC
Q 047659 479 MGMYNIKPDVITHTVLIRGIASQG 502 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~~~~~g 502 (619)
.... ..|+..|...+..|...+
T Consensus 1394 ~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1394 IITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred Hhcc--cccHHHHHHHHHHHHhhC
Confidence 1111 345666666666665554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-17 Score=169.01 Aligned_cols=427 Identities=13% Similarity=0.062 Sum_probs=281.2
Q ss_pred HHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHH
Q 047659 87 FDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQY 166 (619)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 166 (619)
|++.+..+|.+.+ +|..++. +.+.|++++|..+|+++++..|. +...|...+..+.+.|++++|
T Consensus 2 le~al~~~P~~~~--------------~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a 65 (530)
T 2ooe_A 2 AEKKLEENPYDLD--------------AWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKV 65 (530)
T ss_dssp HHHHHHHCTTCHH--------------HHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHhhhCCCCHH--------------HHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHH
Confidence 5677777777766 7888888 47889999999999999987554 888999999999999999999
Q ss_pred HHHHHHHhhCCccc--hHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCC-CChhhHHHHHHHHHh---------cCC
Q 047659 167 YKLCRAMRGKGFCV--YEFLMNGL-LRKGVIENAFH----MHRQVIQR-GFV-PNIVTCNKILKRLCI---------NGQ 228 (619)
Q Consensus 167 ~~~~~~~~~~~~~~--~~~l~~~~-~~~~~~~~A~~----~~~~~~~~-~~~-~~~~~~~~ll~~~~~---------~~~ 228 (619)
..+|++++...|++ |...+... ...|+.+.|.+ +|+.++.. |.. ++...|...+..... .|+
T Consensus 66 ~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 66 EKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 99999999988844 55555433 34677777665 66666553 433 346677777776654 677
Q ss_pred cchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047659 229 IGNASSLFDVLLLVGPKPN-VVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLL 307 (619)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 307 (619)
++.|..+|++.+.. +..+ ...|..........|. .+...++. .+.+++..|..++.
T Consensus 146 ~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~ 202 (530)
T 2ooe_A 146 ITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAK 202 (530)
T ss_dssp HHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHH
Confidence 88888888888762 2111 1223222211100010 00011110 01233444544444
Q ss_pred HHH------HcC---CCCC--------HHHHHHHHHHHHcC----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 308 TAL------DRG---LKLD--------VVVFSSVMDAYVGI----GDV----GRAVQTYDRMLNGGFLPNVISYSILIKG 362 (619)
Q Consensus 308 ~~~------~~~---~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 362 (619)
... +.. ++|+ ...|...+...... ++. ..+..+|++.... .+.+...|..+...
T Consensus 203 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 203 EYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQY 281 (530)
T ss_dssp HHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 321 111 2332 23454444333221 222 3666777777764 23467777777777
Q ss_pred HHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047659 363 LCQ-------QGRLV-------EACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSL 428 (619)
Q Consensus 363 ~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 428 (619)
+.+ .|+++ +|..+++...+.-.+.+...|..++..+.+.|++++|..+|+.+.+. .|+
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~------ 353 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDI------ 353 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSS------
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--ccc------
Confidence 664 67766 88888888875222335677788888888888888888888888874 332
Q ss_pred HHhccHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCCHHH
Q 047659 429 LINGLMGDALRFFFQSVRMTLIPNL-FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRG-IASQGSLSS 506 (619)
Q Consensus 429 ll~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 506 (619)
+. ..|...+..+.+.|+.++|..+|+...+.. +.+...|...... +...|++++
T Consensus 354 -----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 354 -----------------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHH
T ss_pred -----------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhH
Confidence 22 366777777777888888888888887652 2222333322222 335788999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCc--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047659 507 AILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNG-VAP--DIAIYNVLLNMLIKECNLDAALKLFGQ 583 (619)
Q Consensus 507 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (619)
|..+|++.++.. +-+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+......|+.+.+..+.++
T Consensus 410 A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 410 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999888752 3357788888888888999999999999988753 233 245888888888888999999999888
Q ss_pred HHh
Q 047659 584 LTD 586 (619)
Q Consensus 584 ~~~ 586 (619)
+.+
T Consensus 489 ~~~ 491 (530)
T 2ooe_A 489 RFT 491 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-16 Score=160.89 Aligned_cols=366 Identities=12% Similarity=0.037 Sum_probs=284.0
Q ss_pred hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCCHHHHHH
Q 047659 129 DESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGVIENAFH 199 (619)
Q Consensus 129 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~ 199 (619)
..+...++...+.+ ++.++..+...|.. .+++++|+.+|++..+.+. +.+..+...|.. .+++++|.+
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 33456666665533 77888888888887 7888899999988887765 447788888887 888999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHH
Q 047659 200 MHRQVIQRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK----EAKLEKAFQLY 271 (619)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 271 (619)
++++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999888875 56677777788877 778889999998887754 56667777777776 77899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHH
Q 047659 272 NLMMEMDLVPDLIIYSILIDGLFK----AGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVG----IGDVGRAVQTYDR 343 (619)
Q Consensus 272 ~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~ 343 (619)
+...+.| +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9888764 67777788888877 788999999999888765 56677777777775 7889999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHH
Q 047659 344 MLNGGFLPNVISYSILIKGLCQ----QGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKS-----GKLRDGFSLYDNM 414 (619)
Q Consensus 344 ~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~ 414 (619)
..+.| +...+..+...+.. .+++++|...|+...+.+ +...+..+...|... +++++|...++..
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 88764 56667777777777 788999999999887653 455666677777776 7888888888877
Q ss_pred HHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHhhCCCCCCHhhH
Q 047659 415 IKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLK---RATDTVKLFMLMGMYNIKPDVITH 491 (619)
Q Consensus 415 ~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 491 (619)
.+.+ +...+..+...|...| +.++|...|+...+.+ +...+
T Consensus 323 ~~~~---------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 366 (490)
T 2xm6_A 323 AEQG---------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQ 366 (490)
T ss_dssp HHTT---------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHH
T ss_pred HhcC---------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHH
Confidence 7653 3345556666666655 7788888888887763 66778
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCC
Q 047659 492 TVLIRGIAS----QGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFK----GKNISVGLHMFKLMERNGV 554 (619)
Q Consensus 492 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 554 (619)
..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|.+.|++..+.+.
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 888888887 789999999999988865 56677778888887 7899999999999888653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-17 Score=168.70 Aligned_cols=418 Identities=13% Similarity=0.062 Sum_probs=282.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+..+|..++.. .+.|++++|+.+|++++..+|.+.. .|..++..+.+.|++++|..+|++++.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~--------------~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGR--------------FWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7778888888884 7789999999999999998887766 788889999999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHH-HhcCChhHHHH----HHHHHhhC-C--c---cchHHHHHHHHh---------cCCHHHHHHH
Q 047659 141 MGIYLSPDLVQRLMSCL-VDSNSVGQYYK----LCRAMRGK-G--F---CVYEFLMNGLLR---------KGVIENAFHM 200 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~~~-~--~---~~~~~l~~~~~~---------~~~~~~A~~~ 200 (619)
.. |++..|...+... ...|+.+.|.+ +|++++.. + + ..|...+..... .|+++.|..+
T Consensus 75 ~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 75 KV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp TC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred cC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 64 4777787777543 34577776665 66666542 2 2 126666665544 6889999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------
Q 047659 201 HRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLM------ 274 (619)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------ 274 (619)
|+++++.........|..........|. ..+. .++. ...+++..|..+++.+
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHH
Confidence 9999873111112233322221111110 0011 1110 0223445555555442
Q ss_pred HhCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----
Q 047659 275 MEMD---LVPD--------LIIYSILIDGLFKA----GRL----KEGNELLLTALDRGLKLDVVVFSSVMDAYVG----- 330 (619)
Q Consensus 275 ~~~~---~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----- 330 (619)
.+.. ++|+ ...|...+...... ++. ..+..+|+++....+ .+...|..++..+..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhh
Confidence 1111 2333 23455554433221 222 367778888887643 367788888877765
Q ss_pred --CCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 047659 331 --IGDVG-------RAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPS--LLTYSSLIDGFC 399 (619)
Q Consensus 331 --~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 399 (619)
.|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+. .|+ ...|...+..+.
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 367 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHH
Confidence 68876 88999999886323446788888888888999999999999999886 343 247888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HHHhcCChhHHHHHHHH
Q 047659 400 KSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMD-GCCRLKRATDTVKLFML 478 (619)
Q Consensus 400 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~ 478 (619)
+.|++++|..+|+...+. .|. +...|..... .+...|+.++|..+|+.
T Consensus 368 ~~~~~~~A~~~~~~Al~~--~~~-----------------------------~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKARED--ART-----------------------------RHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHHHHHHHTC--TTC-----------------------------CTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--cCC-----------------------------chHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 899999999999998875 222 1112221111 23357899999999998
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 047659 479 MGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRG-LTPD--VITYSAIIHGLFKGKNISVGLHMFKLMERN 552 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (619)
..+.. +.+...|..++..+...|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 417 al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 417 GLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77653 3467888888888888999999999999998863 2232 447888888888889999999999888774
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-19 Score=174.08 Aligned_cols=251 Identities=13% Similarity=0.047 Sum_probs=163.3
Q ss_pred HccCCchhHHH-HHHHhhc--CC----CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 43 IKTNNPTPAIQ-FFKWTHN--CV----SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 43 ~~~~~~~~A~~-~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
.-.|++++|++ .|+.+.. +. +...+..++..+.+.|++++|...|++++..+|.... ++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~ 101 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME--------------AW 101 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH--------------HH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------------HH
Confidence 34588999998 8887766 33 3567899999999999999999999999998887766 88
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHH--------
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFL-------- 184 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l-------- 184 (619)
..++.+|.+.|++++|+..|+++.+..+. ++.++..++.++...|++++|++.++++.+..|+. +...
T Consensus 102 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 102 QYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhc
Confidence 89999999999999999999999987654 88899999999999999999999999999888822 2211
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHH
Q 047659 185 -------MNGLLRKGVIENAFHMHRQVIQRGFVP--NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLI 255 (619)
Q Consensus 185 -------~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 255 (619)
+..+...|++++|...++.+++.. +. +..++..+...+...|++++|...|+++....+ .+..++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~ 258 (368)
T 1fch_A 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLG 258 (368)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 222225556666666666555553 11 345555555555555555555555555554322 1344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
..+...|++++|.+.|+.+.+... .+..++..+..++.+.|++++|...++++.+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555554321 2344555555555555555555555555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=175.79 Aligned_cols=263 Identities=11% Similarity=0.048 Sum_probs=198.5
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+...+..++..+.+.|++++|...|++++..+|.... ++..++..|.+.|++++|+..|+++++.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE--------------AWQFLGITQAENENEQAAIVALQRCLEL 128 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34566999999999999999999999999999888766 8999999999999999999999999987
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHH----------HHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEF----------LMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~----------l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
.+. ++.++..++.+|...|++++|+..|+++.+..| +.+.. +...+...|++++|.+.++++++..
T Consensus 129 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 129 QPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred CCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 654 789999999999999999999999999998877 22332 3677778888888888888888774
Q ss_pred CCC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 047659 209 FVP--NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIY 286 (619)
Q Consensus 209 ~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 286 (619)
+. +..++..+...+...|++++|.+.|+++.+..+ .+..+|..+..+|...|++++|.+.|+.+.+... .+..++
T Consensus 208 -p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 284 (365)
T 4eqf_A 208 -GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSR 284 (365)
T ss_dssp -CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred -cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHH
Confidence 33 577777888888888888888888888776533 2567777888888888888888888888776532 246777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 047659 287 SILIDGLFKAGRLKEGNELLLTALDRGLK-----------LDVVVFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 287 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
..+..++...|++++|...++++.+.... .+..+|..+..++...|+.+.+.+...
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777788888888888888777654211 023455555555555555555554443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-16 Score=165.65 Aligned_cols=385 Identities=11% Similarity=0.126 Sum_probs=269.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
..+|+-....++.+...|.+.+|+++|++++.. |.. +.+.....+.++....+. +.....+..++...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~----------fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~ 1049 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSV----------FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN 1049 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCc----------ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh
Confidence 566667778888999999999999999999954 321 111112666777777776 55666666665532
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLL-RKGVIENAFHMHRQVIQRGFVPNIVTCNKI 219 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 219 (619)
. + ...++..+...|.+++|..+|++.. .+...+..+. ..+++++|.++.+++ .+..+|..+
T Consensus 1050 ~----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqL 1111 (1630)
T 1xi4_A 1050 Y----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQL 1111 (1630)
T ss_pred c----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHH
Confidence 1 1 3348888899999999999999973 1222223333 788999999998865 357889999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047659 220 LKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRL 299 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 299 (619)
..++...|++++|.+.|.+. .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 99999999999999999765 377788889999999999999999999888754 3433444588889999888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 300 KEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQV 379 (619)
Q Consensus 300 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (619)
++...+. . .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 8644443 2 346667778999999999999999999885 47899999999999999999999877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047659 380 LIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTL 459 (619)
Q Consensus 380 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (619)
. +..+|..+..+|...|++..|......+.. +...+..+
T Consensus 1248 ~------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv-----------------------------------~~deLeel 1286 (1630)
T 1xi4_A 1248 N------STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----------------------------------HADELEEL 1286 (1630)
T ss_pred C------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-----------------------------------CHHHHHHH
Confidence 3 678899999999999999888877654322 22334455
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHhHHHHHH
Q 047659 460 MDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIAS--QGSLSSAILLFFQMLKRGLTP------DVITYSAIIH 531 (619)
Q Consensus 460 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~ 531 (619)
+..|.+.|.+++|+.+++...... +.....|+-+...|++ .++.-++.+.|..-. +++| +...|.-+.-
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHH
Confidence 556666666666666665554332 2233344444444443 223333333333221 1122 3445566666
Q ss_pred HHHccCChHHHH
Q 047659 532 GLFKGKNISVGL 543 (619)
Q Consensus 532 ~~~~~g~~~~A~ 543 (619)
.|.+.|+++.|.
T Consensus 1364 LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1364 LYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhcccHHHHH
Confidence 666666666555
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-19 Score=171.84 Aligned_cols=261 Identities=11% Similarity=-0.010 Sum_probs=220.7
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+...+......+.+.|++++|+..|+.+.. |.+..++..++.++...|++++|...|++++..+|....
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------- 134 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK--------- 134 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------
Confidence 344588889999999999999999999988 888999999999999999999999999999999887766
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH----------HHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV----------QRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++..++.+|...|++++|+..|+++.+..+. +...+ ..++..+...|++++|+..|+++.+..|
T Consensus 135 -----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 208 (365)
T 4eqf_A 135 -----ALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG 208 (365)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence 8999999999999999999999999886433 22223 3458899999999999999999999887
Q ss_pred c---c--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH
Q 047659 179 C---V--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFST 253 (619)
Q Consensus 179 ~---~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (619)
+ + +..+..++...|++++|.+.++++++.. +.+..+|..+..+|...|++++|...|+++....+. +..++..
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYN 286 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHH
Confidence 4 2 8889999999999999999999999985 667889999999999999999999999999886433 5888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 254 LINAFCKEAKLEKAFQLYNLMMEMDLV-----------PDLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 254 l~~~~~~~~~~~~a~~~~~~m~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
+..+|...|++++|...|+.+.+.... .+..+|..+..++...|+.+.+..+...
T Consensus 287 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 287 LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999999998764211 1357788999999999999888877654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-18 Score=167.11 Aligned_cols=306 Identities=12% Similarity=-0.045 Sum_probs=196.1
Q ss_pred HHccCChhHHHH-HHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 047659 74 LLQSDMRDVASH-VFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQR 152 (619)
Q Consensus 74 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 152 (619)
+...|++++|.. .|++++...|.++. .....+..++..+.+.|++++|+..|+++++..+. ++.++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 103 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPL----------RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQY 103 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTT----------TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcc----------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 334567777776 66666654443321 01225667777777777777777777777776544 6677777
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCc
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 229 (619)
++.++...|++++|++.|+++.+.+| +. +..++.++...|++++|.+.++.+.+.. +.+...+..+...
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~------- 175 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG------- 175 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------
Confidence 77777777777777777777776666 22 6666677777777777777777776653 2222222111000
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP-DLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
.. . ..+. ..+..+...+ ..|++++|...|+.+.+..... +..++..+...+...|++++|...+++
T Consensus 176 ~~-------~----~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 176 AG-------G----AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp ----------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hh-------h----hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 0 0000 0111222233 7778888888888887653221 467778888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--
Q 047659 309 ALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEP-- 386 (619)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 386 (619)
+.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+.......
T Consensus 243 al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 243 ALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 8776433 67788888888888888888888888887653 3467778888888888888888888888887653221
Q ss_pred --------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047659 387 --------SLLTYSSLIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 387 --------~~~~~~~ll~~~~~~~~~~~a~~~~~~ 413 (619)
...+|..+..+|.+.|++++|..++..
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 257788888999999999998888764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-18 Score=162.05 Aligned_cols=262 Identities=7% Similarity=-0.037 Sum_probs=156.4
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
+...+...+..+...|++++|...|++++..+|.... ++..++..+...|++++|...|+++.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE--------------AWRSLGLTQAENEKDGLAIIALNHARMLD 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4456677777788888888888888888877776555 66777778888888888888888887765
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHH--------------HH-HHHhcCCHHHHHHHHHHH
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFL--------------MN-GLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l--------------~~-~~~~~~~~~~A~~~~~~~ 204 (619)
+. +..++..++.++...|++++|++.++++.+..|+. +..+ .. .+...|++++|.+.++.+
T Consensus 86 ~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 86 PK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 43 67777777888888888888888888877776621 3222 11 244555566666666665
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 047659 205 IQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLI 284 (619)
Q Consensus 205 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 284 (619)
.+.. +.+...+..+...+...|++++|.+.++++....+ .+..++..+...+...|++++|.+.|+.+.+... .+..
T Consensus 165 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~ 241 (327)
T 3cv0_A 165 LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVR 241 (327)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH
Confidence 5553 33455555555566666666666666665554422 2344555555555555555555555555554321 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 047659 285 IYSILIDGLFKAGRLKEGNELLLTALDRGLKL-----------DVVVFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 285 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
++..+..++...|++++|.+.++++.+..... +...+..+..++...|++++|..+++
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55555555555555555555555554432211 23444444555555555555544443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-18 Score=164.93 Aligned_cols=264 Identities=10% Similarity=-0.050 Sum_probs=225.9
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 30 LQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
.+++.+......+...|++++|+..|+.+.. |.+..++..++.++...|++++|...+++++..+|....
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------- 90 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-------- 90 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHH--------
Confidence 3556677888889999999999999999987 788899999999999999999999999999999887766
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH--------------HH-HHHhcCChhHHHHHHHH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL--------------MS-CLVDSNSVGQYYKLCRA 172 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~ 172 (619)
++..++..|...|++++|...++++.+..+. +...+..+ .. .+...|++++|+..+++
T Consensus 91 ------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 91 ------VHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 8889999999999999999999999987554 34444443 33 47788999999999999
Q ss_pred HhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChh
Q 047659 173 MRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVV 249 (619)
Q Consensus 173 ~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 249 (619)
+.+..| +. +..++..+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...|+++....+ .+..
T Consensus 164 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~ 241 (327)
T 3cv0_A 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVR 241 (327)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH
Confidence 998888 33 8889999999999999999999999885 56788899999999999999999999999988643 3678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP-----------DLIIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
.+..+...+...|++++|.+.|+.+.+..... +..++..+..++...|+.++|..+++...
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 89999999999999999999999988753221 46788999999999999999999886543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-16 Score=156.70 Aligned_cols=332 Identities=12% Similarity=-0.027 Sum_probs=216.1
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.....+..++.++...|++++|++.|+++++..+.... ....+....+|..++.+|...|++++|...++++.+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-----~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-----DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-----GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-----cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 344566788999999999999999999999875321100 000122223789999999999999999999998865
Q ss_pred CCC-------CCCHHhHHHHHHHHHh--cCChhHHHHHHHHHhhCCc-cc--hHHHHHH---HHhcCCHHHHHHHHHHHH
Q 047659 141 MGI-------YLSPDLVQRLMSCLVD--SNSVGQYYKLCRAMRGKGF-CV--YEFLMNG---LLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 141 ~~~-------~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~---~~~~~~~~~A~~~~~~~~ 205 (619)
... ...+.++..+..++.. .+++++|++.|+++++.+| ++ +..+..+ +...++.++|++.+++.+
T Consensus 123 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 311 1135666666666554 4578999999999999888 33 4444444 345678889999999998
Q ss_pred HCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047659 206 QRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP 281 (619)
Q Consensus 206 ~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 281 (619)
+.. +.+..++..+...+.. .|++++|.+.+++.....+ .+...+..+...|...|++++|.+.|+...+....
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN- 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-
Confidence 875 5566666666555544 4678899999999887643 36778888999999999999999999999876433
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047659 282 DLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIK 361 (619)
Q Consensus 282 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 361 (619)
+..++..+..+|...+... .... ..... ......+.++.|...+++..+.. +.+..++..+..
T Consensus 280 ~~~~~~~lg~~y~~~~~~~---------~~~~-~~~~~------~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQV---------MNLR-ENGMY------GKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh---------hhHH-HHHHH------HHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 5666666665553221110 0000 00000 00111123567777777766542 234455677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHHc
Q 047659 362 GLCQQGRLVEACGLFGQVLIRRLEPSLL--TYSSLID-GFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~ 417 (619)
.+...|++++|.+.|++.......+... .+..+.. ...+.|++++|+..|.+..+.
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888888888888887764333221 1222222 234677888888888877764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.8e-17 Score=153.45 Aligned_cols=387 Identities=13% Similarity=0.080 Sum_probs=168.0
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHH
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
-+.|++++|.++++++ . ++.+|..++.++.+.|++++|++.|.+. .+++.|..++..+...|++++|+..+.
T Consensus 14 ~~~~~ld~A~~fae~~----~--~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC----N--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC----C--ChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3668899999999999 2 3459999999999999999999999764 233458888899999999999999888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD 282 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 282 (619)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77775 5667888899999999999999887774 367779999999999999999999999977
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 283 LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG 362 (619)
Q Consensus 283 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 362 (619)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHH
Confidence 36899999999999999999999988 27889999999999999999996655442 2344445678888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHH
Q 047659 363 LCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFF 442 (619)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~ 442 (619)
|.+.|.+++|..+++...... +-....|+-+.-+|++- ++++..+.++....+ .+.. .. .+
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~---ini~-----------k~---~~ 277 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VNIP-----------KV---LR 277 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTT---SCHH-----------HH---HH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH---hcCc-----------HH---HH
Confidence 999999999999999987654 33455666666666654 333333333322221 1100 00 00
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047659 443 QSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYN-----------IKPDVITHTVLIRGIASQGSLSSAILLF 511 (619)
Q Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 511 (619)
.. -+...|..+...|...++++.|....-.-.... -..+...|-..+..|... . ..++.-+
T Consensus 278 ~~------~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~-p~~l~~l 349 (449)
T 1b89_A 278 AA------EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-K-PLLLNDL 349 (449)
T ss_dssp HH------HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-C-GGGHHHH
T ss_pred HH------HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-C-HHHHHHH
Confidence 00 156788999999999999998876432211000 012333444444444311 1 1111111
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047659 512 FQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLF 581 (619)
Q Consensus 512 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (619)
-......+ | .+..+..+.+.|.+.-+..+++.+...+ +..+=.++-..|....|++.-....
T Consensus 350 l~~l~~~l--d---~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 350 LMVLSPRL--D---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHGGGC--C---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcc--C---cHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 11111111 1 1334444556666666666665555432 4444455666666666665544433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-16 Score=156.49 Aligned_cols=363 Identities=9% Similarity=-0.077 Sum_probs=248.5
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc-----------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN-----------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR 102 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 102 (619)
.++.+...+...|++++|++.|+.+.+ +....+|..++.++...|++++|...+++++...+.....
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~-- 130 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP-- 130 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc--
Confidence 456677777889999999999998754 2334567889999999999999999999998753321110
Q ss_pred HHHhhcCCCcccHHHHHHHHHHc--CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH---HhcCChhHHHHHHHHHhhCC
Q 047659 103 LFRDSLGDFGCDYSFLIENYVRI--GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL---VDSNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~ 177 (619)
..+....++..++.++... +++++|+..|+++++..|. ++..+..+..++ ...++.++|++.++++++.+
T Consensus 131 ----~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 131 ----YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp ----SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ----cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 0011122566666666654 5799999999999997665 777777766654 45678889999999999988
Q ss_pred c-cc--hHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh
Q 047659 178 F-CV--YEFLMNGLL----RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVT 250 (619)
Q Consensus 178 ~-~~--~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 250 (619)
| +. +..+...+. ..+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 8 33 444544444 4567889999999998886 677888999999999999999999999999886443 5666
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 251 FSTLINAFCKE-------------------AKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 251 ~~~l~~~~~~~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
+..+...|... +.++.|...|+...+.+.. +..++..+...+...|++++|.+.|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 76666655432 2356777778777765332 456788888999999999999999999988
Q ss_pred cCCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047659 312 RGLKLDVV--VFSSVMD-AYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL 388 (619)
Q Consensus 312 ~~~~~~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 388 (619)
....+... .+..+.. .....|++++|+..|++..+. .|+....... ...+.++++.....+ +.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CCCH
Confidence 75443321 2233332 235788999999999998875 3443332222 233445555555543 3356
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047659 389 LTYSSLIDGFCKSGKLRDGFSLYDNMIKRG 418 (619)
Q Consensus 389 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 418 (619)
.+|..+..+|...|++++|+..|++..+.+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp THHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 788999999999999999999999988753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-16 Score=146.96 Aligned_cols=284 Identities=11% Similarity=0.061 Sum_probs=134.5
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
+-+.|++++|.+.++++.. | + +|..|+.++.+.|++++|++.|.+. +|+.+|..+
T Consensus 13 l~~~~~ld~A~~fae~~~~--~---~--------------vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V 67 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNE--P---A--------------VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEV 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCC--h---H--------------HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHH
Confidence 3467889999999988822 1 2 8999999999999999999999653 477799999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCcc--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch
Q 047659 154 MSCLVDSNSVGQYYKLCRAMRGKGFC--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 154 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 231 (619)
+..+...|++++|+..++...+..++ +...++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999988887775443 38889999999999999998884 3677899999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 232 ASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 232 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
|...|..+ ..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--- 202 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 202 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---
Confidence 99999977 47999999999999999999999998 2789999999999999999999655543
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC----
Q 047659 312 RGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIR-RLEP---- 386 (619)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---- 386 (619)
+...+.-...++..|.+.|.++++..+++...... +.....|+.+.-+|++- ++++..+-++..... +++|
T Consensus 203 --L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 203 --IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred --HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHH
Confidence 22345556678999999999999999999998765 55778888887777764 334333333333221 2222
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHH
Q 047659 387 --SLLTYSSLIDGFCKSGKLRDGFSLY 411 (619)
Q Consensus 387 --~~~~~~~ll~~~~~~~~~~~a~~~~ 411 (619)
+...|..+...|.+.++++.|....
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3455777888888888888877643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-17 Score=144.44 Aligned_cols=197 Identities=13% Similarity=0.009 Sum_probs=118.2
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|+++.++..++..+.+.|++++|...|++++..+|.+.. ++..++.++.+.|++++|+..|+++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE--------------ALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666667777777777777777777777776666655 666677777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhc-----------CChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDS-----------NSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
.+|. ++..+..+..++... |++++|+..|+++++.+| +. +..+..++...|++++|++.++++++
T Consensus 68 ~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 68 RTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 5544 566666677776666 666666666666666666 22 56666666666666666666666666
Q ss_pred CCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 207 RGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 207 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
.. .+...+..+..++...|++++|...|++..+..+. +...+..+...+...|++++|...|+...
T Consensus 147 ~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 147 LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 65 55666666666666666666666666666654332 45556666666666666666666665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-18 Score=173.24 Aligned_cols=152 Identities=15% Similarity=0.173 Sum_probs=129.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGM---YNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSA 528 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 528 (619)
...+|+++|++|++.|+.++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988763 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 047659 529 IIHGLFKGKNI-SVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD------IITYNTIIC 601 (619)
Q Consensus 529 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~ll~ 601 (619)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+ +++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 789999999999999999999999998776653 44444444 3456665 556666777
Q ss_pred HHhhcCc
Q 047659 602 GYCSLNS 608 (619)
Q Consensus 602 ~~~~~~~ 608 (619)
-|.+.++
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 7777664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-15 Score=141.02 Aligned_cols=251 Identities=10% Similarity=0.041 Sum_probs=157.2
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE 195 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~ 195 (619)
+......|++..|++.++.+...++.+.......+.++|...|+++.|+..++. .++ +. +..+...+...++.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 344566788888888887765543332234556677888888888888776544 122 22 566666667777777
Q ss_pred HHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 196 NAFHMHRQVIQRGF-VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLM 274 (619)
Q Consensus 196 ~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 274 (619)
+|++.+++++..+. +.+...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777777766543 33445555566677777777777777665 245666666777777777777777777777
Q ss_pred HhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 047659 275 MEMDLVPDLIIY---SILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLP 351 (619)
Q Consensus 275 ~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 351 (619)
.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.|++..... +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 6643 332111 122233334466777777777776653 3366667777777777777777777777766542 33
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 047659 352 NVISYSILIKGLCQQGRLVE-ACGLFGQVLIR 382 (619)
Q Consensus 352 ~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~ 382 (619)
+..++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 56666666666666666654 45666666655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=140.22 Aligned_cols=194 Identities=11% Similarity=0.062 Sum_probs=163.8
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+..+...+.+.|++++|+..|+.+.. |.++.++..++.++.+.|++++|...|+++++.+|....
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~--------- 74 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG--------- 74 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------
Confidence 566777888889999999999999999988 889999999999999999999999999999999998877
Q ss_pred CCCcccHHHHHHHHHHc-----------CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047659 109 GDFGCDYSFLIENYVRI-----------GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 177 (619)
++..++.++.+. |++++|+..|++.++..|. ++..+..+..++...|++++|+..|+++++.+
T Consensus 75 -----a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 75 -----GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp -----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 888999999999 9999999999999998665 78999999999999999999999999988766
Q ss_pred c--cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 178 F--CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 178 ~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
. ..+..+..++...|++++|...++.+++.. +.+...+..+...+...|++++|...|++..
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 3 238899999999999999999999999985 6678889999999999999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=141.45 Aligned_cols=235 Identities=11% Similarity=0.024 Sum_probs=166.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+......+...|++++|+..|+.+.. |.+..++..++.++...|++++|...+++++. .+.+...
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~-------- 72 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA-------- 72 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC--------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH--------
Confidence 456667777778888888888888888776 66777888888888888888888888888887 3332220
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLM 185 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~ 185 (619)
...+|..++..+...|++++|+..|+++.+..+. ++.++..++.+|...|++++|+..|+++.+..| +. +..+.
T Consensus 73 --~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 73 --KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 0114778888888888888888888888876554 667788888888888888888888888887777 22 55566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---cchHHHHHHHHHhCC-CCCC------hhhHHHHH
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQ---IGNASSLFDVLLLVG-PKPN------VVTFSTLI 255 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~ 255 (619)
..+...+++++|.+.++.+++.. +.+...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 34444558888888888887774 4446666677777777777 777887777766431 1122 14566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMD 278 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~ 278 (619)
..|...|++++|.+.|+.+.+..
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777777777777653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-15 Score=146.46 Aligned_cols=225 Identities=11% Similarity=0.012 Sum_probs=155.8
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCC-hhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM-RDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
.+..+...+...|++++|+..|+.++. |.+..+|..++.++...|+ +++|+..|++++..+|++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~----------- 167 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ----------- 167 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-----------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH-----------
Confidence 344445555667778888888887776 7777777778888877775 88888888888877777666
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNG 187 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~ 187 (619)
+|..++.++...|++++|+..|+++++.++. +..+|..+..++.+.|++++|+..|+++++.+| +. |..+..+
T Consensus 168 ---a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 168 ---VWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 243 (382)
T ss_dssp ---HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777778888888888888776655 777777777777777888888888877777777 22 7777777
Q ss_pred HHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CcchHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 047659 188 LLR-KGVIENA-----FHMHRQVIQRGFVPNIVTCNKILKRLCING--QIGNASSLFDVLLLVGPKPNVVTFSTLINAFC 259 (619)
Q Consensus 188 ~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 259 (619)
+.. .|..++| ++.++.++... +.+...|+.+..++...| ++++|.+.+.++ +. .+.+...+..+..+|.
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYE 320 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHH
Confidence 776 4544666 46677776664 455666777766666666 466777766666 32 2224556666666666
Q ss_pred hcC---------CHHHHHHHHHHH-Hh
Q 047659 260 KEA---------KLEKAFQLYNLM-ME 276 (619)
Q Consensus 260 ~~~---------~~~~a~~~~~~m-~~ 276 (619)
+.| .+++|.++|+.+ .+
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHH
Confidence 653 246677777776 44
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=170.71 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=110.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHH
Q 047659 486 PDVITHTVLIRGIASQGSLSSAILLFFQMLK---RGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYN 562 (619)
Q Consensus 486 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 562 (619)
.-..|||++|++|++.|++++|..+|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457899999999999999999999988764 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 047659 563 VLLNMLIKECN-LDAALKLFGQLTDRGLEPDIITYNTIICGYCS 605 (619)
Q Consensus 563 ~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 605 (619)
++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999999998 57899999999999999999999955544443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=147.42 Aligned_cols=248 Identities=10% Similarity=0.015 Sum_probs=203.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCC-hhhHHHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGK-IDESVEIFAYMS 139 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 139 (619)
|.+..++..++.++...|++++|+..|++++..+|.+.. +|..++.++...|+ +++|+..|++++
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~--------------a~~~~g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT--------------VWHFRRVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH--------------HHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 334567888999999999999999999999999998877 88999999999997 999999999999
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047659 140 DMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 216 (619)
+.++. +..+|..+..++...|++++|+..|+++++.+| +. |..+..++...|++++|++.++++++.. +.+...|
T Consensus 160 ~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~ 237 (382)
T 2h6f_A 160 EEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVW 237 (382)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHH
Confidence 98766 899999999999999999999999999999998 33 8889999999999999999999999986 6678889
Q ss_pred HHHHHHHHh-cCCcchH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 217 NKILKRLCI-NGQIGNA-----SSLFDVLLLVGPKPNVVTFSTLINAFCKEA--KLEKAFQLYNLMMEMDLVPDLIIYSI 288 (619)
Q Consensus 217 ~~ll~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ 288 (619)
+.+..++.. .|..++| ++.|++.+...+. +...|+.+...+...| ++++|++.+..+ +. .+.+...+..
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~ 314 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHH
Confidence 999999988 6666888 4788888876443 6778888888888877 688898888887 33 2336777888
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 047659 289 LIDGLFKAG---------RLKEGNELLLTA-LDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 289 ll~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~ 328 (619)
+..++.+.| ..++|.++++.+ .+.+. .....|..+...+
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l 363 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 888888764 257888888888 55432 2445555554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-14 Score=134.89 Aligned_cols=253 Identities=13% Similarity=0.072 Sum_probs=208.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCccc----hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCc
Q 047659 154 MSCLVDSNSVGQYYKLCRAMRGKGFCV----YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 154 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 229 (619)
++-....|++..|+..++.....+|+. ...+.+++...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 344557899999999999888877732 56788999999999999986654 2 366778888899999999999
Q ss_pred chHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKP-NVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
++|.+.++++...+..| +...+..+..++...|++++|++.++. +.+...+..+...+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998776445 456677777999999999999999987 45788999999999999999999999999
Q ss_pred HHHcCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047659 309 ALDRGLKLDVVV---FSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLE 385 (619)
Q Consensus 309 ~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 385 (619)
+.+.. |+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++......
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99875 33221 123445555679999999999999987 4568889999999999999999999999999887433
Q ss_pred CCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCC
Q 047659 386 PSLLTYSSLIDGFCKSGKLRD-GFSLYDNMIKRGLKPD 422 (619)
Q Consensus 386 ~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~ 422 (619)
+..++..++..+...|+.++ +..+++++.+. .|+
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~ 267 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRS 267 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTT
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCC
Confidence 67788889999999999876 57888888876 454
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-15 Score=146.11 Aligned_cols=314 Identities=13% Similarity=0.019 Sum_probs=176.3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCCh---hhHHHHHHHHHhCCCC
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKI---DESVEIFAYMSDMGIY 144 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~ 144 (619)
..++..+.+.|++++|...|+++.+.+ +.+ ++..|+..|...|++ ++|...|++..+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g--~~~--------------A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG--YSE--------------AQVGLADIQVGTRDPAQIKQAEATYRAAADT--- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--CCT--------------GGGTCC----------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--CHH--------------HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---
Confidence 346777888888999999988887652 222 566777777778888 8898888888753
Q ss_pred CCHHhHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCc-cchHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhh
Q 047659 145 LSPDLVQRLMSCLVDSN-----SVGQYYKLCRAMRGKGF-CVYEFLMNGLLRKGVIE---NAFHMHRQVIQRGFVPNIVT 215 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~ 215 (619)
++..+..+..++...+ ++++|+.+|++..+.++ +.+..+...|...+..+ .+.+.+......| +...
T Consensus 68 -~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a 143 (452)
T 3e4b_A 68 -SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEA 143 (452)
T ss_dssp ----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTH
T ss_pred -CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHH
Confidence 6677777777555554 66788888888887766 55777777777655433 3444444444444 4555
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 216 CNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA---KLEKAFQLYNLMMEMDLVPDLIIYSILIDG 292 (619)
Q Consensus 216 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 292 (619)
+..+...|...+.++++......+.+.....++..+..+...|...| +.++|++.|+...+.|.. +...+..+...
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~ 222 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARV 222 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHH
Confidence 66666777776766555554333332222334446677777777777 777777777777776533 44444555555
Q ss_pred HHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047659 293 LFKA----GRLKEGNELLLTALDRGLKLDVVVFSSVMDA-Y--VGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQ 365 (619)
Q Consensus 293 ~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 365 (619)
|... ++.++|.+.|+... .| ++..+..+... + ...+++++|.+.|++..+.| +...+..+...|.
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY- 294 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-
T ss_pred HhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-
Confidence 5443 57777777777766 32 44455555554 3 35667777777777777654 5555555655555
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHc
Q 047659 366 QG-----RLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCK----SGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 366 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 417 (619)
.| ++++|...|+... . .+...+..+...|.. ..++++|...|....+.
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 33 6677777766665 2 234444445444443 22555555555555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-15 Score=138.26 Aligned_cols=225 Identities=11% Similarity=0.017 Sum_probs=137.6
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...|++++..+ .+.. ++..++.+|...|++++|+..++++.+..+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDIT--------------YLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHH--------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 455667777777777777777777777765 3333 6677777777777777777777777654332
Q ss_pred C--C----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 145 L--S----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 145 ~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
. + +.++..++.++...|++++|+..|+++.+..++ ...+...|++++|.+.++.+.... +.+...+..
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 144 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARL 144 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHH
Confidence 1 1 456666777777777777777777776665543 123444555666666666666553 334455555
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047659 219 ILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGR 298 (619)
Q Consensus 219 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 298 (619)
+...+...|++++|...++++....+. +...+..+...+...|++++|.+.|+...+... .+..++..+..++...|+
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhh
Confidence 666666666666666666666554322 455556666666666666666666666655422 245555556666666666
Q ss_pred HHHHHHHHHHHHHc
Q 047659 299 LKEGNELLLTALDR 312 (619)
Q Consensus 299 ~~~a~~~~~~~~~~ 312 (619)
+++|...++...+.
T Consensus 223 ~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 223 YASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-15 Score=145.80 Aligned_cols=348 Identities=11% Similarity=0.003 Sum_probs=214.6
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHhhCCccchHHHHHHHHhcC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV---GQYYKLCRAMRGKGFCVYEFLMNGLLRKG 192 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (619)
..++..+.+.|++++|.+.|++..+.+ ++.++..+..+|...|++ ++|+.+|++..+..++.+..+...+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 457788899999999999999998764 556777788888888888 89999999988774466777777666555
Q ss_pred -----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcc---hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 047659 193 -----VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIG---NASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKL 264 (619)
Q Consensus 193 -----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 264 (619)
++++|...+++..+.| +...+..+...|...+..+ ++.+.+......| +...+..+...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 7889999999999987 2336777777777765544 4445555544432 455677777788777755
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCHHHH
Q 047659 265 EKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAG---RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGI----GDVGRA 337 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a 337 (619)
+++......+.+.-...++..+..+...|...| +.++|.+.|+...+.|.. +...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 544444332222111123337777888888888 888999999998888744 555556666666554 688889
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHH
Q 047659 338 VQTYDRMLNGGFLPNVISYSILIKG-L--CQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSG-----KLRDGFS 409 (619)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~ 409 (619)
.+.|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|..
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99888887 33 45555556555 3 45788888888888888765 4555666666665 44 6777777
Q ss_pred HHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCC
Q 047659 410 LYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCR----LKRATDTVKLFMLMGMYNIK 485 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 485 (619)
.|+... .| +......|...|.. ..+.++|...|+...+.|
T Consensus 309 ~~~~Aa-~g---------------------------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-- 352 (452)
T 3e4b_A 309 HFEKAV-GR---------------------------------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-- 352 (452)
T ss_dssp HHHTTT-TT---------------------------------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--
T ss_pred HHHHHh-CC---------------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--
Confidence 776654 21 34445555555554 337777777777776655
Q ss_pred CCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047659 486 PDVITHTVLIRGIAS----QGSLSSAILLFFQMLKRG 518 (619)
Q Consensus 486 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 518 (619)
+......+...|.. ..++.+|..+|+...+.|
T Consensus 353 -~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 353 -QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp -CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 23344455555543 346777777777777665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-15 Score=137.01 Aligned_cols=228 Identities=11% Similarity=0.029 Sum_probs=195.1
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
++.+..+...+...|++++|+..|+.+.. ..++.++..++.++...|++++|...+++++...|...... +.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~ 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY-------KV 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH-------HH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch-------HH
Confidence 45677788888999999999999999887 66778899999999999999999999999999776541000 00
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNG 187 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~ 187 (619)
...++..++..|...|++++|+..|+++.+..+ +. ..+.+.|++++|...++++....| + .+..+...
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR--TA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc--hh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 012889999999999999999999999998543 43 456677889999999999999988 2 38899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 267 (619)
+...|++++|.+.++.+++.. +.+...+..+...+...|++++|...|+......+. +...|..+..++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999986 667888999999999999999999999999886433 678899999999999999999
Q ss_pred HHHHHHHHhC
Q 047659 268 FQLYNLMMEM 277 (619)
Q Consensus 268 ~~~~~~m~~~ 277 (619)
.+.|+...+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-15 Score=136.27 Aligned_cols=235 Identities=11% Similarity=0.004 Sum_probs=172.0
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..+...+..+...|++++|...|++++..+|.... ++..++..|...|++++|+..++++.+..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 67 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------------IYNRRAVCYYELAKYDLAQKDIETYFSKV 67 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------------THHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 4567788899999999999999999999998877665 88889999999999999999999998843
Q ss_pred CCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 143 IYL--SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 143 ~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
..+ ...++..++.++...|++++|++.|+++.+..| + .+..+..++...|++++|.+.++++++.. +.+...+.
T Consensus 68 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~ 146 (272)
T 3u4t_A 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFY 146 (272)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHH
Confidence 222 234588889999999999999999999888777 2 28888888888888888888888887763 55566666
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHH
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK---LEKAFQLYNLMMEMD-LVPD------LIIYS 287 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~-~~~~------~~~~~ 287 (619)
.+...+...+++++|.+.|+++.+..+. +...+..+...+...|+ +++|...|+.+.+.. -.|+ ..+|.
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 6662333455888888888887775332 45666667777776676 666777777665431 1122 14556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047659 288 ILIDGLFKAGRLKEGNELLLTALDRG 313 (619)
Q Consensus 288 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 313 (619)
.+...+...|++++|.+.++++.+..
T Consensus 226 ~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 226 YIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666677777777777777776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=137.89 Aligned_cols=200 Identities=12% Similarity=0.016 Sum_probs=129.1
Q ss_pred cccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHH
Q 047659 27 ISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLF 104 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (619)
.+.+++..+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++..+|....
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----- 92 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT----- 92 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH-----
Confidence 3555666777777777888888888888888776 666777778888888888888888888888887766554
Q ss_pred HhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--h
Q 047659 105 RDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--Y 181 (619)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~ 181 (619)
++..++..+...|++++|...++++.+..+. ++..+..++..+...|++++|+..++++.+..+ +. +
T Consensus 93 ---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 162 (243)
T 2q7f_A 93 ---------AYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEAR 162 (243)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHH
Confidence 6777788888888888888888888776543 677777777888888888888888877776665 22 6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 182 EFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
..+..++...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666777777777777777766654 445556666666677777777777777766654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.8e-16 Score=142.69 Aligned_cols=242 Identities=11% Similarity=-0.056 Sum_probs=159.2
Q ss_pred ccCCchhHHHHHHHhhc------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH
Q 047659 44 KTNNPTPAIQFFKWTHN------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF 117 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (619)
..|++++|+..|+.+.. +.++.++..++.++...|++++|...|++++..+|.... ++..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~ 82 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE--------------VFNY 82 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH--------------HHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH--------------HHHH
Confidence 45778888888887775 224566677888888888888888888888887776655 7778
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc-hHHHHHHHHhcCCHH
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV-YEFLMNGLLRKGVIE 195 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~ 195 (619)
++..|...|++++|+..|+++++..+. ++.++..++.+|.+.|++++|+..|+++.+..| +. .......+...|+++
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 161 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 161 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHH
Confidence 888888888888888888888876544 667788888888888888888888888877777 22 333444445667777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP---NVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
+|...+....... +++...+. ++..+...++.++|...++......+.. +...+..+...+...|++++|...|+
T Consensus 162 ~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 162 QAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766653 33433333 5555666666677777777665432110 13556666667777777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047659 273 LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELL 306 (619)
Q Consensus 273 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 306 (619)
.+.... |+. +.....++...|++++|.+.+
T Consensus 240 ~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 240 LAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 776643 221 122233444555555555444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-14 Score=129.06 Aligned_cols=197 Identities=11% Similarity=-0.051 Sum_probs=122.9
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
+..+..++..+...|++++|...|++++...|.... ++..++..|...|++++|.+.|+++.+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD--------------AHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 345566666777777777777777777766655544 666677777777777777777777766543
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh--CCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRG--KGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
. +...+..++..+...|++++|++.++++.+ ..+ + .+..++.++...|++++|.+.++.+.+.. +.+...+..
T Consensus 103 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 180 (252)
T 2ho1_A 103 R-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALE 180 (252)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 3 566666677777777777777777777666 333 1 15555666666666666666666666553 334555566
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 219 ILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 219 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
+...+...|++++|...++.+....+ .+...+..+...+...|++++|.+.++.+.+.
T Consensus 181 la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 181 MADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666666666666666655422 24445555556666666666666666666553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-14 Score=130.47 Aligned_cols=197 Identities=11% Similarity=-0.069 Sum_probs=174.4
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
++.+..+...+...|++++|++.|+.+.. |.+..++..++.++...|++++|...+++++..+|....
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------- 106 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR---------- 106 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH----------
Confidence 34566777778899999999999999887 778889999999999999999999999999998887665
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLM 185 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~ 185 (619)
++..++..|...|++++|+..|+++.+.+..| +...+..++.++...|++++|+..++++.+..| +. +..++
T Consensus 107 ----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 107 ----VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 88899999999999999999999998822223 567888999999999999999999999998887 33 88899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG 243 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 243 (619)
.++...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999875 5677788889999999999999999999998863
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-13 Score=127.00 Aligned_cols=224 Identities=11% Similarity=0.002 Sum_probs=129.1
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH----cCChhhHHHHHHH
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR----IGKIDESVEIFAY 137 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 137 (619)
.++.++..++..+...|++++|...|++++. +.+.. ++..++..|.. .|++++|+..|++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~--------------a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 67 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS--------------GCFNLGVLYYQGQGVEKNLKKAASFYAK 67 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH--------------HHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH--------------HHHHHHHHHHcCCCcCCCHHHHHHHHHH
Confidence 4455566666666666666666666666665 22222 55566666666 6666666666666
Q ss_pred HHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047659 138 MSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 208 (619)
..+.+ ++.++..+...|.. .+++++|+..|++..+.+. ..+..+...+.. .+++++|.+.+++..+.+
T Consensus 68 a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 68 ACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 66543 55666666666666 6666666666666655543 335555555555 666666666666666554
Q ss_pred CCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 047659 209 FVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK----EAKLEKAFQLYNLMMEMDLV 280 (619)
Q Consensus 209 ~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~ 280 (619)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|+...+.+
T Consensus 145 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-- 216 (273)
T 1ouv_A 145 ---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-- 216 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--
Confidence 34445555555555 556666666666655432 33445555555555 566666666666555542
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 047659 281 PDLIIYSILIDGLFK----AGRLKEGNELLLTALDRG 313 (619)
Q Consensus 281 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 313 (619)
+...+..+...+.. .+++++|.+.+++..+.+
T Consensus 217 -~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 -NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp -CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 24444555555555 555566666665555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-14 Score=126.69 Aligned_cols=198 Identities=11% Similarity=-0.032 Sum_probs=115.4
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..+..++..+...|++++|...+++++..+|.... ++..++..|...|++++|...++++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL--------------AWLVRAEIYQYLKVNDKAQESFRQALSIK 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH--------------HHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 3445556666666666666666666666666555444 56666666666666666666666666654
Q ss_pred CCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHhh--CCc---cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047659 143 IYLSPDLVQRLMSCLVDS-NSVGQYYKLCRAMRG--KGF---CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 216 (619)
+. +..++..++.++... |++++|+..++++.+ ..+ ..+..+..++...|++++|...++.+.+.. +.+...+
T Consensus 73 ~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 150 (225)
T 2vq2_A 73 PD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAF 150 (225)
T ss_dssp TT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred CC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHH
Confidence 33 555666666666666 666666666666665 222 115555555556666666666666655543 3345555
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
..+...+...|++++|...++.+....+..+...+..+...+...|+.+.+..+++.+.+
T Consensus 151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555666666666666666555443212444455555555555666666555555543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-11 Score=127.57 Aligned_cols=471 Identities=12% Similarity=0.011 Sum_probs=296.7
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC 156 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (619)
....++-...|++.+..+|.+.+ .|..++..+.+.+.++.|..+|++++..-| .....|..-+..
T Consensus 45 ~~~~~d~i~~lE~~l~~np~d~~--------------~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~ 109 (679)
T 4e6h_A 45 VRDESDVIGKLNDMIEEQPTDIF--------------LYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSL 109 (679)
T ss_dssp -CCCSCHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHCcCCHH--------------HHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 34566677788999999888877 899999999999999999999999998744 478889988888
Q ss_pred HHhcCC---hhHHHHHHHHHhhCC---ccc--hHHHHHHHHhcCCH--------HHHHHHHHHHHHC-CC-CC-ChhhHH
Q 047659 157 LVDSNS---VGQYYKLCRAMRGKG---FCV--YEFLMNGLLRKGVI--------ENAFHMHRQVIQR-GF-VP-NIVTCN 217 (619)
Q Consensus 157 ~~~~~~---~~~A~~~~~~~~~~~---~~~--~~~l~~~~~~~~~~--------~~A~~~~~~~~~~-~~-~~-~~~~~~ 217 (619)
..+.+. ++.+..+|++.+... +++ |..-+....+.++. +...++|+.++.. |. .+ +...|.
T Consensus 110 E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~ 189 (679)
T 4e6h_A 110 EFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWN 189 (679)
T ss_dssp HHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred HHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHH
Confidence 888888 999999999999887 543 55555555444443 3344677776654 54 33 356787
Q ss_pred HHHHHHHh---------cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 218 KILKRLCI---------NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSI 288 (619)
Q Consensus 218 ~ll~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 288 (619)
..+..... .++.+.+..+|+.++......-..+|.....--...+. ..+.+++.+.
T Consensus 190 ~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-------------- 254 (679)
T 4e6h_A 190 EYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-------------- 254 (679)
T ss_dssp HHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH--------------
T ss_pred HHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh--------------
Confidence 77765542 23466788888888752111112222221111100000 0111111110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CC----C-----------C-----C---HHHHHHHHHHHHcCC-------CHHH
Q 047659 289 LIDGLFKAGRLKEGNELLLTALDR--GL----K-----------L-----D---VVVFSSVMDAYVGIG-------DVGR 336 (619)
Q Consensus 289 ll~~~~~~~~~~~a~~~~~~~~~~--~~----~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~ 336 (619)
..+++.|...+.++... ++ + | + ...|...+..--..+ ..+.
T Consensus 255 -------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~R 327 (679)
T 4e6h_A 255 -------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKAR 327 (679)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHH
Confidence 11222233333322110 11 0 0 0 133444444333322 1234
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047659 337 AVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEAC-GLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMI 415 (619)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 415 (619)
+..+|++.... ++-....|-..+..+...|+.++|. ++++..... .+.+...|-..+....+.|+++.|..+|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56677777764 3457788888888888888888886 999998865 33455567777888888999999999998887
Q ss_pred HcCC---------CCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 047659 416 KRGL---------KPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKP 486 (619)
Q Consensus 416 ~~~~---------~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 486 (619)
.... .|+.. ... ..... ....+|...+....+.|+.+.|..+|....+.....
T Consensus 406 ~~l~~~~~~~~~~~p~~~-----------~~~---~~~~~----~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~ 467 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNE-----------SAI---NQLKS----KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV 467 (679)
T ss_dssp HHHHHHHHHHHHHSTTCH-----------HHH---HHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHhhhhhhccCcch-----------hhh---hhhcc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Confidence 6310 01100 000 00000 022357777777778889999999999887651122
Q ss_pred CHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCc--CHHHHHH
Q 047659 487 DVITHTVLIRGIASQ-GSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAP--DIAIYNV 563 (619)
Q Consensus 487 ~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 563 (619)
....|...+..-.+. ++.+.|..+|+..++. ++-+...|...++.....|+.+.|..+|++.......+ ....|..
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~ 546 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK 546 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 233343333333333 4589999999998885 34466667788888888899999999999998863321 3458888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 047659 564 LLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN 607 (619)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 607 (619)
++..-.+.|+.+.+..+.+++.+ ..|+......++.-|.-.+
T Consensus 547 ~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 547 VIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTNKYKVLD 588 (679)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHHHTCBTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHhcCCc
Confidence 88888999999999999999997 3566666666776665433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-13 Score=128.49 Aligned_cols=223 Identities=9% Similarity=-0.015 Sum_probs=198.8
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHc----cCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQ----SDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
+++.+..+...+...|++++|++.|+.+..+.++.++..++.++.. .|++++|...|+++...+ ...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~------- 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN------- 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH-------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH-------
Confidence 4566777888889999999999999999988888999999999999 999999999999999864 333
Q ss_pred hcCCCcccHHHHHHHHHH----cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc
Q 047659 107 SLGDFGCDYSFLIENYVR----IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 178 (619)
++..++..|.. .+++++|+..|++..+.+ ++.++..+...|.. .+++++|++.|++..+.++
T Consensus 76 -------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 145 (273)
T 1ouv_A 76 -------GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND 145 (273)
T ss_dssp -------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence 78899999999 999999999999999864 78899999999999 9999999999999999886
Q ss_pred -cchHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChh
Q 047659 179 -CVYEFLMNGLLR----KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVV 249 (619)
Q Consensus 179 -~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 249 (619)
..+..+...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.++ ..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HH
Confidence 458888888988 999999999999999885 56778888999999 9999999999999988643 66
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 047659 250 TFSTLINAFCK----EAKLEKAFQLYNLMMEMD 278 (619)
Q Consensus 250 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 278 (619)
.+..+...|.. .+++++|.+.|+...+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 78888889988 999999999999998865
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-15 Score=133.28 Aligned_cols=200 Identities=11% Similarity=0.070 Sum_probs=131.8
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
...+..+..++..+...|++++|...|++++..+|.... ++..++..+...|++++|+..|+++.+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAI--------------PYINFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777788888888888888888888887776655 777888888888888888888888887
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
..+. +...+..++.++...|++++|++.++++.+..+ +. +..++.++...|++++|.+.++++.+.. +.+...+.
T Consensus 86 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 163 (243)
T 2q7f_A 86 LDSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARF 163 (243)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHH
Confidence 6543 677788888888888888888888888877766 22 6677777777777877777777777664 44566677
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
.+...+...|++++|...++.+....+ .+..++..+..++...|++++|.+.|+.+.+.
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777777777777777766533 24556666777777777777777777776664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-15 Score=137.13 Aligned_cols=225 Identities=10% Similarity=-0.060 Sum_probs=151.3
Q ss_pred HHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 047659 73 VLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQR 152 (619)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 152 (619)
.+...|++++|...|++++...+.+.. ....++..++..+...|++++|+..|+++.+.++. ++.++..
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~ 82 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDD----------ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNY 82 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCc----------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHH
Confidence 334568888999999988876332110 01117888888888999999999999988887554 7888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCc
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 229 (619)
++.++...|++++|+..|+++.+..| +. +..++.++...|++++|...++.+.+.. |+.......+..+...|++
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCH
Confidence 88888888888888888888888776 23 7777888888888888888888887763 3333334444455566777
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP---DLIIYSILIDGLFKAGRLKEGNELL 306 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~ 306 (619)
++|...++......+ ++...+ .++..+...++.++|.+.++......... +..++..+...+...|++++|...+
T Consensus 161 ~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 161 KQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788877776665422 233333 35556666677777777777665432110 1345555555566666666666666
Q ss_pred HHHHHc
Q 047659 307 LTALDR 312 (619)
Q Consensus 307 ~~~~~~ 312 (619)
+++.+.
T Consensus 239 ~~al~~ 244 (275)
T 1xnf_A 239 KLAVAN 244 (275)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.9e-14 Score=125.64 Aligned_cols=198 Identities=10% Similarity=-0.091 Sum_probs=174.1
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
++.....+...+...|++++|++.|+.+.. |.+...+..++.++...|++++|...+++++...|....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------- 77 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE--------- 77 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---------
Confidence 455667778888999999999999999887 777889999999999999999999999999998887665
Q ss_pred CCCcccHHHHHHHHHHc-CChhhHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHH
Q 047659 109 GDFGCDYSFLIENYVRI-GKIDESVEIFAYMSDMGIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEF 183 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~ 183 (619)
++..++..+... |++++|...++++.+.+..| +...+..++.++...|++++|+..++++.+..| +. +..
T Consensus 78 -----~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 152 (225)
T 2vq2_A 78 -----INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152 (225)
T ss_dssp -----HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred -----HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence 788999999999 99999999999999832223 367889999999999999999999999998888 33 888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 184 LMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
++.++...|++++|.+.++.+.+.....+...+..+...+...|+.+.|...++.+...
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999999998752167778888888889999999999999998764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-11 Score=124.07 Aligned_cols=432 Identities=10% Similarity=0.002 Sum_probs=225.7
Q ss_pred CchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH
Q 047659 47 NPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR 124 (619)
Q Consensus 47 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (619)
...+.+..|+.... |.+...|..++..+.+.+.++.++.+|++++..+|.... .|...+..-.+
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~--------------lW~~Yi~~E~~ 112 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMAN--------------IWCMRLSLEFD 112 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHh
Confidence 44555656665555 899999999999999999999999999999999888776 78888888888
Q ss_pred cCC---hhhHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCCh--------hHHHHHHHHHhh---C-Ccc---chHHHH
Q 047659 125 IGK---IDESVEIFAYMSDMGI-YLSPDLVQRLMSCLVDSNSV--------GQYYKLCRAMRG---K-GFC---VYEFLM 185 (619)
Q Consensus 125 ~g~---~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~---~-~~~---~~~~l~ 185 (619)
.|+ ++.+.++|++.+...+ .|++..|..-+....+.++. +...++|+.++. . +++ .|...+
T Consensus 113 ~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 113 KMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYL 192 (679)
T ss_dssp C--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred hCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 888 9999999999998642 36888998888766665543 334577877654 2 332 155555
Q ss_pred HHHH---------hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 047659 186 NGLL---------RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLIN 256 (619)
Q Consensus 186 ~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 256 (619)
.... ..++++.+..+|..++......-..+|......-...+ ...+.+++.+..
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~~---------------- 255 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGELS---------------- 255 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHHH----------------
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHhh----------------
Confidence 4433 23457889999999986422222334433222111111 111222221110
Q ss_pred HHHhcCCHHHHHHHHHHHHhC--CC----C-----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHH
Q 047659 257 AFCKEAKLEKAFQLYNLMMEM--DL----V-----------P-----D---LIIYSILIDGLFKAG-------RLKEGNE 304 (619)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~--~~----~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~ 304 (619)
.+++.|...+.++... ++ + | + ...|...+..--..+ ..+.+..
T Consensus 256 -----~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~ 330 (679)
T 4e6h_A 256 -----AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTY 330 (679)
T ss_dssp -----HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHH
Confidence 0111112222111100 00 0 0 0 122333332222211 1223344
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 305 LLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAV-QTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRR 383 (619)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (619)
+|+++.... +.+...|...+..+...|+.++|. ++|++.... .+.+...|-..+...-+.|+++.|.++|+.+....
T Consensus 331 ~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 331 VYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 555555442 225555555555555556655564 666665543 23344445555555555666666666666655421
Q ss_pred ---------CCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHhhHHHHHh----ccHHH
Q 047659 384 ---------LEPS------------LLTYSSLIDGFCKSGKLRDGFSLYDNMIKR-G-LKPDAVVCSLLIN----GLMGD 436 (619)
Q Consensus 384 ---------~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~----~~~~~ 436 (619)
..|+ ...|...++...+.|..+.|..+|....+. . ..+......+.+. ...+.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 0121 224555566666666667777777666654 1 1111111111110 01233
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 437 ALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKP--DVITHTVLIRGIASQGSLSSAILLFFQM 514 (619)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 514 (619)
|..+|+...+.. +.+...+...+......|+.+.|..+|+........+ ....|...+..-...|+.+.+..+.+++
T Consensus 489 Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 489 ACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333221 1133344444554555556666666666555442111 2234555555555556666666666665
Q ss_pred HHC
Q 047659 515 LKR 517 (619)
Q Consensus 515 ~~~ 517 (619)
.+.
T Consensus 568 ~~~ 570 (679)
T 4e6h_A 568 FEK 570 (679)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=129.02 Aligned_cols=213 Identities=10% Similarity=0.026 Sum_probs=168.8
Q ss_pred hhHHHHHHHhhc--CCCCccHHHHHHHHHc-------cCCh-------hHHHHHHHHHHH-hcCCchhHHHHHHhhcCCC
Q 047659 49 TPAIQFFKWTHN--CVSSPNIAQLIHVLLQ-------SDMR-------DVASHVFDKMVI-QFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 49 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 111 (619)
+.|+..|+.+.. |.++..|..++..+.. .|++ ++|+..|++++. ..|....
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~------------ 100 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------------ 100 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH------------
Confidence 578899999888 9999999999988864 5886 999999999999 5776655
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD-LVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNG 187 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~ 187 (619)
+|..++..+.+.|++++|..+|+++++..+. ++. +|..++..+.+.|++++|+.+|+++++..|+. |...+..
T Consensus 101 --~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 --LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 177 (308)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 8899999999999999999999999986544 454 89999999999999999999999999887733 3333222
Q ss_pred HH-hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHhcCC
Q 047659 188 LL-RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG-PKP--NVVTFSTLINAFCKEAK 263 (619)
Q Consensus 188 ~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~ 263 (619)
.. ..|+++.|.++|+.+++.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 22 2688888888888887764 4567778888888888888888888888887752 233 35567777777777888
Q ss_pred HHHHHHHHHHHHhC
Q 047659 264 LEKAFQLYNLMMEM 277 (619)
Q Consensus 264 ~~~a~~~~~~m~~~ 277 (619)
.+.|..+++.+.+.
T Consensus 257 ~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 257 LASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-12 Score=122.87 Aligned_cols=216 Identities=10% Similarity=-0.002 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHH-------HcCCh-------hhHHHHHHHHHh-CCCCC
Q 047659 81 DVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYV-------RIGKI-------DESVEIFAYMSD-MGIYL 145 (619)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~ 145 (619)
++|...|++++..+|.+++ +|..++..+. +.|++ ++|..+|++.++ ..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~--------------~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~- 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPD--------------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK- 97 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-
T ss_pred HHHHHHHHHHHHHcCCCHH--------------HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-
Confidence 7889999999999998887 7788887776 35886 899999999998 4544
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c-chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C-VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
+...|..++..+.+.|++++|..+|+++++..| + +|..++..+.+.|++++|..+|+++++.. +.+...|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~ 176 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 176 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 778999999999999999999999999998877 2 37778888888888999999998888775 344555544333
Q ss_pred HHH-hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcC
Q 047659 222 RLC-INGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD-LVP--DLIIYSILIDGLFKAG 297 (619)
Q Consensus 222 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~~ 297 (619)
... ..|++++|.++|+...+..+. +...|..++..+.+.|++++|..+|+...... +.| ....|..++....+.|
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 322 258888888888888765332 56777888888888888888888888888752 344 3567777777777888
Q ss_pred CHHHHHHHHHHHHHcC
Q 047659 298 RLKEGNELLLTALDRG 313 (619)
Q Consensus 298 ~~~~a~~~~~~~~~~~ 313 (619)
+.+.|..+++.+.+..
T Consensus 256 ~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 256 DLASILKVEKRRFTAF 271 (308)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 8888888888877653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=119.15 Aligned_cols=163 Identities=13% Similarity=-0.011 Sum_probs=93.5
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..|..++.++.+.|++++|+..|+++++.+|.+.. ++..++.+|.+.|++++|+..++.+....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE--------------TLLKLGKTYMDIGLPNDAIESLKKFVVLD 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3445556666666666666666666666666655554 55566666666666666666666665544
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKI 219 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 219 (619)
+. ++..+..+...+...++++.|...+.++.+..| +. +..+..++...|++++|++.++++++.. +.+..++..+
T Consensus 70 ~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l 147 (184)
T 3vtx_A 70 TT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSI 147 (184)
T ss_dssp CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHH
Confidence 33 455555555666666666666666666555555 11 5555555555555555555555555543 3444555555
Q ss_pred HHHHHhcCCcchHHHHHHHHHh
Q 047659 220 LKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~~ 241 (619)
..+|.+.|++++|.+.|++.++
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555555555555554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-14 Score=139.62 Aligned_cols=199 Identities=10% Similarity=-0.012 Sum_probs=123.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCC----ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSS----PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
.+......+...|++++|+..|+.+.. +.++ ..+..++.++...|++++|...+++++.......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-------- 121 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC--------
Confidence 445566677889999999999998887 4443 46778889999999999999999998875211000
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC-----CCCHHhHHHHHHHHHhcCC-----------------hhH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI-----YLSPDLVQRLMSCLVDSNS-----------------VGQ 165 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-----------------~~~ 165 (619)
.+....++..++..|...|++++|...++++.+... .....++..+..+|...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 000111788888999999999999999988865411 1134467778888888888 777
Q ss_pred HHHHHHHHhhCCc---------cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCcch
Q 047659 166 YYKLCRAMRGKGF---------CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFV-PN----IVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 166 A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~ 231 (619)
|++.+++..+... ..+..+...+...|++++|.+.+++..+.... .+ ...+..+...|...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 7777766543211 11445555555555555555555555443100 00 1133444444444444444
Q ss_pred HHHHHHHHH
Q 047659 232 ASSLFDVLL 240 (619)
Q Consensus 232 A~~~~~~~~ 240 (619)
|...+++..
T Consensus 282 A~~~~~~al 290 (411)
T 4a1s_A 282 AAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-14 Score=140.81 Aligned_cols=208 Identities=13% Similarity=-0.026 Sum_probs=165.5
Q ss_pred chhHHHHHHHhhc--CCCCccHHHHHHHHHccCCh-hHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH
Q 047659 48 PTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMR-DVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR 124 (619)
Q Consensus 48 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (619)
+++|+..++.... +.+...+..++.++...|++ ++|+..|+++++.+|...+ +|..++.+|.+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~--------------a~~~lg~~~~~ 149 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE--------------AWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHHHH
Confidence 4556666666555 66778888999999999999 9999999999998887766 78899999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---------CChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhc-
Q 047659 125 IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDS---------NSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRK- 191 (619)
Q Consensus 125 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~- 191 (619)
.|++++|++.|+++++.. |+...+..+..+|... |++++|+..|+++++..| +. +..+..++...
T Consensus 150 ~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp HTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998865 4568888899999888 888999999998888877 23 77788888777
Q ss_pred -------CCHHHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 047659 192 -------GVIENAFHMHRQVIQRGFV---PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKE 261 (619)
Q Consensus 192 -------~~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 261 (619)
|++++|++.++++++.. + .+...|..+..+|...|++++|.+.|++..+..+. +...+..+..++...
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFL 305 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 88888888888888764 3 46777888888888888888888888887775433 456677777777777
Q ss_pred CCHHHHHHHHHH
Q 047659 262 AKLEKAFQLYNL 273 (619)
Q Consensus 262 ~~~~~a~~~~~~ 273 (619)
|++++|.+.+..
T Consensus 306 g~~~eAi~~~~~ 317 (474)
T 4abn_A 306 SRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 777777765543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=136.39 Aligned_cols=278 Identities=13% Similarity=0.048 Sum_probs=165.0
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC---
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM--- 141 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 141 (619)
..+..++..+...|++++|...|++++...|.+.... ..++..++..|...|++++|+..|+++++.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL----------SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHH----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999888765310 016889999999999999999999998753
Q ss_pred -CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC------c---cchHHHHHHHHhcCC-----------------
Q 047659 142 -GI-YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG------F---CVYEFLMNGLLRKGV----------------- 193 (619)
Q Consensus 142 -~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~---~~~~~l~~~~~~~~~----------------- 193 (619)
+. .....++..+...|...|++++|+..++++.+.. + ..+..+..++...|+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 11 1234678888999999999999999998876542 1 126666666777777
Q ss_pred HHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047659 194 IENAFHMHRQVIQR----GF-VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF 268 (619)
Q Consensus 194 ~~~A~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 268 (619)
+++|.+.+.+..+. +. .....++..+...+...|++++|...+++....... ...
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~------------------- 258 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGD------------------- 258 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCC-------------------
Confidence 66666665554432 00 011123444444444455555555554444321100 000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 269 QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK-----LDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
......++..+...+...|++++|...+++..+.... ....++..+...+...|++++|...+++
T Consensus 259 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 259 ----------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0000123444455555555555555555544432100 0134455555566666666666666655
Q ss_pred HHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 344 MLNG----GF-LPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 344 ~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
.... +. .....++..+...+...|++++|...+++..+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5432 00 011235556666677777777777777776654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-13 Score=116.47 Aligned_cols=163 Identities=10% Similarity=0.055 Sum_probs=150.4
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
++..+..+...+...|++++|++.|+.+.. |.++.++..++.++.+.|++++|...++++....|....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------- 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE--------- 74 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---------
Confidence 456777888889999999999999999998 899999999999999999999999999999999888776
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLM 185 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~ 185 (619)
.+..++..+...++++.|...++......+. ++..+..++.+|.+.|++++|++.|+++.+.+| +. +..+.
T Consensus 75 -----~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 75 -----AYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 7888999999999999999999999987655 889999999999999999999999999999988 33 99999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
.++...|++++|.+.|+++++..
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999873
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=135.75 Aligned_cols=301 Identities=15% Similarity=0.035 Sum_probs=161.9
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC-
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM- 141 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 141 (619)
....+...+..+...|++++|...|++++...|.++... ..++..++..|...|++++|...++++...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL----------SAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 334556777888888888888888888888776654310 016777888888888888888888877543
Q ss_pred ---CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c------chHHHHHHHHhcCC---------------
Q 047659 142 ---GIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C------VYEFLMNGLLRKGV--------------- 193 (619)
Q Consensus 142 ---~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~------~~~~l~~~~~~~~~--------------- 193 (619)
+..| ...++..++..+...|++++|+..++++.+..+ + .+..+...+...|+
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 1111 244667777788888888888888777655432 1 25555555555555
Q ss_pred -----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 047659 194 -----IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP-NVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 194 -----~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 267 (619)
++.|.+.+....+.. . ..+..+ ...++..+...+...|++++|
T Consensus 158 ~a~~~~~~A~~~~~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLV----------------------------T---ALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------------H---HTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH----------------------------H---hccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 555555554443320 0 000000 122344444444444444444
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CC-CHHHHHHHHHHHHcCCCHHHH
Q 047659 268 FQLYNLMMEMDL-VPD----LIIYSILIDGLFKAGRLKEGNELLLTALDRGL----KL-DVVVFSSVMDAYVGIGDVGRA 337 (619)
Q Consensus 268 ~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~ll~~~~~~~~~~~a 337 (619)
.+.+++..+... .++ ..++..+...+...|++++|...+++..+... .+ ...++..+...+...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 444444432100 001 12444445555555555555555555443210 00 133455555666666666666
Q ss_pred HHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHhcCCh
Q 047659 338 VQTYDRMLNG----GFL-PNVISYSILIKGLCQQGRLVEACGLFGQVLIRR----LE-PSLLTYSSLIDGFCKSGKL 404 (619)
Q Consensus 338 ~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~ll~~~~~~~~~ 404 (619)
...+++..+. +.. ....++..+...+...|++++|...+++..+.. .. ....++..+...+...|+.
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 6666555432 100 013455666666777777777777777665431 01 1123344455555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=135.14 Aligned_cols=236 Identities=12% Similarity=0.014 Sum_probs=150.2
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCC----ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSS----PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
...+......+...|++++|+..|+.+.. |.++ ..+..++.++...|++++|...+++++.......+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD------ 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc------
Confidence 33556677788899999999999999987 4442 56778999999999999999999998775221100
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCC------------------
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LS----PDLVQRLMSCLVDSNS------------------ 162 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~------------------ 162 (619)
.+....++..++..|...|++++|...++++.+..+. ++ ..++..+..+|...|+
T Consensus 83 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 83 --QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred --cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 0001127888999999999999999999998764221 12 4478889999999999
Q ss_pred --hhHHHHHHHHHhhCC------c---cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhc
Q 047659 163 --VGQYYKLCRAMRGKG------F---CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFV-PN----IVTCNKILKRLCIN 226 (619)
Q Consensus 163 --~~~A~~~~~~~~~~~------~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~ 226 (619)
+++|++.+.+..+.. + ..+..+...+...|++++|.+.+++..+.... ++ ..++..+...+...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 888888887765431 1 11555666666666666666666665543100 01 11444455555555
Q ss_pred CCcchHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 227 GQIGNASSLFDVLLLVGPK-PN----VVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 227 ~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
|++++|...+++....... ++ ..++..+...+...|++++|.+.++...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5555555555554421100 00 2334444444555555555555544443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=133.01 Aligned_cols=279 Identities=13% Similarity=0.027 Sum_probs=148.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCC----CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVS----SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
.+......+...|++++|+..|+.+.. |.+ ...+..++.++...|++++|...+++++.......+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 78 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-------- 78 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc--------
Confidence 445556667778888888888888776 443 245667788888888888888888887664211000
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCC--------------------
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LS----PDLVQRLMSCLVDSNS-------------------- 162 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~-------------------- 162 (619)
.+....++..++..|...|++++|...+++..+..+. ++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 0001116777888888888888888888877653211 11 2356667777777777
Q ss_pred hhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 163 VGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
+++|.+.+++...... ... ........+..+...+...|++++|...+++....
T Consensus 159 ~~~A~~~~~~a~~~~~------------------------~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVT------------------------ALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHHHHHHHHHH------------------------HHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------------------------hcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6666666665443210 000 00011223333444444444444444444443321
Q ss_pred CC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047659 243 GP-----KPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV-PD----LIIYSILIDGLFKAGRLKEGNELLLTALDR 312 (619)
Q Consensus 243 ~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 312 (619)
.. .....++..+...+...|++++|.+.++........ .+ ..++..+...+...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 00 001124444555555555555555555544322000 01 334455555555556666665555554432
Q ss_pred C----C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 313 G----L-KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 313 ~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
. . .....++..+...+...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 0 01123455555666666666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-13 Score=130.61 Aligned_cols=281 Identities=15% Similarity=0.041 Sum_probs=197.8
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC----
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM---- 141 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 141 (619)
.+...+..+...|++++|...|++++...|.+.... ..++..++..|...|++++|++.++++...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL----------SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 456678899999999999999999999887764310 017889999999999999999999987643
Q ss_pred CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 142 GIY-LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 142 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
+.. ....++..+...+...|++++|...++++.+..+. .++. .....++..+.
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~---------------~~~~~~~~~l~ 130 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-----------LNDK---------------VGEARALYNLG 130 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------TTCH---------------HHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-----------hcCc---------------hHHHHHHHHHH
Confidence 111 12456777888888888888888888876543220 0000 00012333344
Q ss_pred HHHHhcCC--------------------cchHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 221 KRLCINGQ--------------------IGNASSLFDVLLLV----GP-KPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 221 ~~~~~~~~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
..+...|+ +++|.+.+++.... +. ......+..+...+...|++++|.+.++...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44444444 55555555443321 11 1124568888899999999999999999886
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047659 276 EMDL-VPD----LIIYSILIDGLFKAGRLKEGNELLLTALDRGLK-LD----VVVFSSVMDAYVGIGDVGRAVQTYDRML 345 (619)
Q Consensus 276 ~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (619)
+... .++ ..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5310 012 347888889999999999999999988753211 11 5677888999999999999999999876
Q ss_pred hC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 346 NG----GF-LPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 346 ~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
+. +. .....++..+...+...|++++|...+++..+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 53 11 112446778899999999999999999998875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=128.59 Aligned_cols=311 Identities=8% Similarity=-0.028 Sum_probs=165.9
Q ss_pred cCChhhHHHHHHHH---HccCCchhHHHHHHHhhc-----CCCCccH--HH--HHHHHHccCChhHHH-----------H
Q 047659 29 DLQFNQANAILANL---IKTNNPTPAIQFFKWTHN-----CVSSPNI--AQ--LIHVLLQSDMRDVAS-----------H 85 (619)
Q Consensus 29 ~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~~~~-----~~~~~~~--~~--l~~~~~~~g~~~~A~-----------~ 85 (619)
.++++.+...+..+ .+++++++|..+++.+.. +.+.... .. .++.....+.++.+. .
T Consensus 6 ~~~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~ 85 (383)
T 3ulq_A 6 VISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD 85 (383)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence 35677777777766 679999999999999876 1233322 11 222233344445554 5
Q ss_pred HHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhc
Q 047659 86 VFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM----GIYL-SPDLVQRLMSCLVDS 160 (619)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~ 160 (619)
.++.+-. .+.+.+.+ ... ..+...+..+...|++++|+..|+.+.+. +..+ ...++..++.+|...
T Consensus 86 ~~~~i~~-~~~~~~~~---l~~-----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~ 156 (383)
T 3ulq_A 86 LLLEIDK-KQARLTGL---LEY-----YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM 156 (383)
T ss_dssp HHHHHHH-HTHHHHHH---HHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHh-cCCCchhH---HHH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 6665433 22222210 000 03445788889999999999999999864 1111 245788888999999
Q ss_pred CChhHHHHHHHHHhhCCc----------cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCc
Q 047659 161 NSVGQYYKLCRAMRGKGF----------CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFV-PNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 161 ~~~~~A~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~ 229 (619)
|++++|+..+.++.+..+ .++..+..++...|++++|.+.+.++++.... ++..
T Consensus 157 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------- 221 (383)
T 3ulq_A 157 KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ--------------- 221 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------
T ss_pred CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH---------------
Confidence 999999998888764311 11444555555555555555555554433100 0000
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM----DL-VPDLIIYSILIDGLFKAGRLKEGNE 304 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~ 304 (619)
....++..+...|...|++++|.+.|++..+. +. +....++..+...+.+.|++++|..
T Consensus 222 ----------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 222 ----------------LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE 285 (383)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 00123444445555555555555555544431 11 1123444555555555555555555
Q ss_pred HHHHHHHc----CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047659 305 LLLTALDR----GLKLDVVVFSSVMDAYVGIGD---VGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFG 377 (619)
Q Consensus 305 ~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 377 (619)
.+++..+. +.+.....+..+...+...|+ +++|..++++... .+.....+..+...|...|++++|...++
T Consensus 286 ~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 363 (383)
T 3ulq_A 286 YHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFL 363 (383)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55554432 111112223445555556665 4455555544411 11122345556666666666666666666
Q ss_pred HHHH
Q 047659 378 QVLI 381 (619)
Q Consensus 378 ~~~~ 381 (619)
....
T Consensus 364 ~al~ 367 (383)
T 3ulq_A 364 KVEQ 367 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=136.77 Aligned_cols=165 Identities=12% Similarity=0.021 Sum_probs=112.4
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.++.++..++.++.+.|++++|+..|+++++.+|+... +|..++.+|.+.|++++|+..|+++++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~--------------a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA--------------AHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566666777777777777777777777776666555 666777777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
.++. +..++..+..+|.+.|++++|++.|+++++.+| + .+..+..++...|++++|++.|+++++.. +.+...+.
T Consensus 72 l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~ 149 (723)
T 4gyw_A 72 ISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYC 149 (723)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHh
Confidence 5544 566677777777777777777777777766666 2 26667777777777777777777777664 44566677
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHh
Q 047659 218 KILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
.+...+...|++++|.+.++++.+
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777666553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-13 Score=132.90 Aligned_cols=194 Identities=10% Similarity=-0.062 Sum_probs=92.1
Q ss_pred CHHhHHHHHHHHHhcCCh-hHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSV-GQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
+...+..+...+...|++ ++|++.|+++++.+| +. +..+..++...|++++|.+.++.+++.. |+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHH
Confidence 344444444444444444 444444444444444 11 4444444444444444444444444432 33344444444
Q ss_pred HHHhc---------CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC--CC
Q 047659 222 RLCIN---------GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKE--------AKLEKAFQLYNLMMEMDLV--PD 282 (619)
Q Consensus 222 ~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~--~~ 282 (619)
.+... |++++|.+.|++..+..+. +...|..+..+|... |++++|++.|+...+.... -+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 44444 5555555555555443222 344455555555444 5555555555555543210 14
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 283 LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 283 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
...|..+..++...|++++|.+.|++..+.... +...+..+...+...|++++|.+.+.+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555555555555555555555555544322 344455555555555555555544433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=134.12 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=150.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+..+...+.++|++++|++.|+.+.+ |.+..++..++.++.+.|++++|+..|+++++.+|+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~--------- 78 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD--------- 78 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------
Confidence 456788888999999999999999999998 888999999999999999999999999999999998877
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc---chHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC---VYEFLM 185 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~ 185 (619)
+|..++.+|.+.|++++|++.|+++++.++. +..++..++.+|.+.|++++|++.|+++++.+|+ .+..++
T Consensus 79 -----a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 79 -----AYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 8999999999999999999999999998765 8899999999999999999999999999999993 399999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 047659 186 NGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
.++...|++++|.+.++++++.
T Consensus 153 ~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 153 HCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHH
T ss_pred hHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999999999887764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.7e-12 Score=112.43 Aligned_cols=201 Identities=9% Similarity=-0.077 Sum_probs=160.0
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHHHhhc--C-CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 30 LQFNQANAILANLIKTNNPTPAIQFFKWTHN--C-VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
.+|+.+......+...|++++|+..|+.+.. | ++...+..++.++...|++++|...|++++..+|....
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------- 77 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN------- 77 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH-------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH-------
Confidence 3678888899999999999999999999988 5 78888889999999999999999999999999888766
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP-------DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (619)
++..++.+|...|++++|+..|++.++..+. ++ ..+..+...+...|++++|++.|+++++.+|+
T Consensus 78 -------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 78 -------AYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred -------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 8899999999999999999999999987654 56 56888889999999999999999999999886
Q ss_pred --c---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 047659 180 --V---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTL 254 (619)
Q Consensus 180 --~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 254 (619)
. +..+..++...| ...++.+...+ ..+...+.... ....+.+++|...+++..+..+. +..+...+
T Consensus 150 ~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3 777777776544 34455555554 33444443333 33456789999999999886433 34444333
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-11 Score=120.18 Aligned_cols=301 Identities=7% Similarity=-0.065 Sum_probs=187.8
Q ss_pred HHHccCChhHHHHHHHHHHHhcCC---chhHHHHHHhhcCCCcccHHHHHHH--HHHcCChhhHH-----------HHHH
Q 047659 73 VLLQSDMRDVASHVFDKMVIQFGK---TYNFFRLFRDSLGDFGCDYSFLIEN--YVRIGKIDESV-----------EIFA 136 (619)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~-----------~~~~ 136 (619)
.+.+.+++++|..+++++.+..+. +.+.+ .|..++.. ..-.++++.+. +.++
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~------------~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLH------------LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHH------------HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHH------------HHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 346899999999999999775432 22211 23333221 22233444444 6666
Q ss_pred HHHhCCCCCCHHhH------HHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047659 137 YMSDMGIYLSPDLV------QRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFV 210 (619)
Q Consensus 137 ~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 210 (619)
.+... +. +...+ ...+..+...|++++|+..|+++.+... ..+-.
T Consensus 89 ~i~~~-~~-~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~---------------------------~~~~~ 139 (383)
T 3ulq_A 89 EIDKK-QA-RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLI---------------------------FVKDR 139 (383)
T ss_dssp HHHHH-TH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG---------------------------GCCCH
T ss_pred HHHhc-CC-CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---------------------------hCCCH
Confidence 65432 11 11111 2244555666666666666666554310 00000
Q ss_pred C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC
Q 047659 211 P-NIVTCNKILKRLCINGQIGNASSLFDVLLLVGP------KPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV-PD 282 (619)
Q Consensus 211 ~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~ 282 (619)
+ ...++..+...|...|++++|...+++...... .....+++.+...|...|++++|.+.|+...+.... ++
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 0 123444445555555555555555555443100 011346777778888888888888888777643100 11
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC
Q 047659 283 ----LIIYSILIDGLFKAGRLKEGNELLLTALDR----GL-KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG----GF 349 (619)
Q Consensus 283 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~ 349 (619)
..++..+..++...|++++|.+.+++..+. +. +....++..+...+...|++++|.+.+++..+. +.
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 299 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD 299 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 247888999999999999999999998872 22 335678899999999999999999999987653 11
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 350 LPNVISYSILIKGLCQQGR---LVEACGLFGQVLIRRLEP-SLLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
+.....+..+...+...|+ +++|..+++.. +..| ....+..+...|.+.|++++|...++...+.
T Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2223345667778888888 77777777765 2222 3446777889999999999999999998763
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-13 Score=126.39 Aligned_cols=244 Identities=11% Similarity=0.009 Sum_probs=148.1
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|....++..++..+...|++++|...+++++........ ...+....++..++..|...|++++|...+++++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG------HDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC------SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444566778889999999999999999999874110000 00000111788999999999999999999999976
Q ss_pred C------CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------c---cchHHHHHHHHhcCCHHHHHHHHH
Q 047659 141 M------GI-YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG--------F---CVYEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 141 ~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~---~~~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
. +. .....++..++..+...|++++|+..++++.+.. + ..+..+..++...|++++|.+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 11 2245678889999999999999999999887642 2 127777888888888888888888
Q ss_pred HHHHC------C-CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC-------CCCChhh-H------HHHHHHHHhc
Q 047659 203 QVIQR------G-FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG-------PKPNVVT-F------STLINAFCKE 261 (619)
Q Consensus 203 ~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~-~------~~l~~~~~~~ 261 (619)
.+.+. + .+....++..+...+...|++++|.+.++++.... ..+.... + ..+...+...
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 87765 1 12234466677777788888888888887776421 1111111 1 1111122223
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 262 AKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
+.+.++...++...... +.+..++..+..++.+.|++++|.+.+++..+
T Consensus 258 ~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333444444433321 11334455555555666666666666555543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-11 Score=106.50 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=115.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++...|....
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------ 77 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK------------ 77 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------------
Confidence 445566666778888888888887776 666677777888888888888888888888877666554
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGL 188 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~ 188 (619)
.+..++..+...|++++|.+.++++.+..+. ++..+..++.++...|++++|.+.++++.+..| +. +..++.++
T Consensus 78 --~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 78 --VATVLGLTYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 6777777888888888888888887776443 667777777777777787777777777776665 22 66666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 047659 189 LRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~~~ 207 (619)
...|++++|.+.++.+.+.
T Consensus 155 ~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 155 EQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc
Confidence 6667777776666666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=122.80 Aligned_cols=234 Identities=10% Similarity=0.047 Sum_probs=169.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc----------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhc-----C
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN----------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQF-----G 95 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~ 95 (619)
.++.+..+...+...|++++|+.+|+.+.. +....++..++.++...|++++|...+++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 344677788888999999999999998875 2223556789999999999999999999998863 1
Q ss_pred CchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC------C-CCCHHhHHHHHHHHHhcCChhHHHH
Q 047659 96 KTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG------I-YLSPDLVQRLMSCLVDSNSVGQYYK 168 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~A~~ 168 (619)
..+. ...++..++..|...|++++|...|+++.+.. . .....++..++.++...|++++|++
T Consensus 106 ~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 106 DHPA-----------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp TCHH-----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CChH-----------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1111 11278899999999999999999999998641 1 2245578889999999999999999
Q ss_pred HHHHHhhC--------Cc---cchHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------hhhHHHHHHHH
Q 047659 169 LCRAMRGK--------GF---CVYEFLMNGLLRKGVIENAFHMHRQVIQRG-------FVPN-------IVTCNKILKRL 223 (619)
Q Consensus 169 ~~~~~~~~--------~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~-------~~~~~~ll~~~ 223 (619)
.++++.+. .+ ..+..+..++...|++++|.+.++++.+.. ..+. ...+..+...+
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCch
Confidence 99998775 33 228889999999999999999999998641 1111 11222333444
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 224 CINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 224 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
...+.+.++...+....... +.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 255 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 255 KDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677777877887776532 23567788999999999999999999998875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-11 Score=110.25 Aligned_cols=204 Identities=10% Similarity=-0.025 Sum_probs=160.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcC-CchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFG-KTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
+.++..+...+..+...|++++|...|++++..+| .+.. .+..++.++...|++++|+..|++.+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~al 69 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSV--------------TAYNCGVCADNIKKYKEAADYFDIAI 69 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcH--------------HHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 34668889999999999999999999999999887 5444 66779999999999999999999999
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc---------hHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047659 140 DMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV---------YEFLMNGLLRKGVIENAFHMHRQVIQRGF 209 (619)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~---------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 209 (619)
+..+. ++.++..++.+|...|++++|+..++++.+..| +. +..+...+...|++++|.+.++.+++..
T Consensus 70 ~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~- 147 (228)
T 4i17_A 70 KKNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT- 147 (228)
T ss_dssp HTTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-
T ss_pred HhCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-
Confidence 97655 778899999999999999999999999999887 33 7778888889999999999999999874
Q ss_pred CC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047659 210 VP--NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYS 287 (619)
Q Consensus 210 ~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 287 (619)
+. +...+..+..+|...| ...++++...+.. +...|.... ....+.+++|+..|+...+.... +..+..
T Consensus 148 p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~ 218 (228)
T 4i17_A 148 SKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQ 218 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 33 4567777777776543 4455666554322 344444333 33456789999999999886432 444444
Q ss_pred HH
Q 047659 288 IL 289 (619)
Q Consensus 288 ~l 289 (619)
.+
T Consensus 219 ~l 220 (228)
T 4i17_A 219 MQ 220 (228)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.1e-11 Score=114.66 Aligned_cols=266 Identities=14% Similarity=-0.009 Sum_probs=158.1
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc--CCCCc-----cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN--CVSSP-----NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
.....+...|++++|+..++.+.. +.... ++..++.++...|++++|...+++++...+...+.. .
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~---- 91 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---Y---- 91 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH---H----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH---H----
Confidence 334445679999999999998776 33322 355677888899999999999999987544322110 0
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC----CC--C-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc---
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG----IY--L-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC--- 179 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--- 179 (619)
...++..++..+...|++++|...+++.+... .. | ....+..+..++...|++++|...+++.....+.
T Consensus 92 -~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 92 -ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 00146778888999999999999999886532 11 2 2345566778888889999999888887654331
Q ss_pred -----chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCcchHHHHHHHHHhCCCCCC-
Q 047659 180 -----VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI-VTCN-----KILKRLCINGQIGNASSLFDVLLLVGPKPN- 247 (619)
Q Consensus 180 -----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~- 247 (619)
.+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++......+.+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 1555666666777777777777766543111111 1111 122335566666666666666554322111
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 248 --VVTFSTLINAFCKEAKLEKAFQLYNLMMEM----DLVPDL-IIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 248 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
...+..+...+...|++++|...++..... |..++. .++..+..++...|+.++|...+++..
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 113344555566666666666666555332 111111 133344444555555555555555544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-10 Score=114.09 Aligned_cols=237 Identities=9% Similarity=-0.039 Sum_probs=129.0
Q ss_pred cCChhhHHHHHHHH---HccCCchhHHHHHHHhhc-----CCCCccH--HHH--HHHHHccCChhHHH---------HHH
Q 047659 29 DLQFNQANAILANL---IKTNNPTPAIQFFKWTHN-----CVSSPNI--AQL--IHVLLQSDMRDVAS---------HVF 87 (619)
Q Consensus 29 ~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~~~~-----~~~~~~~--~~l--~~~~~~~g~~~~A~---------~~~ 87 (619)
.++.+.+...+..+ ..++++++|..+++.+.. ..+.... ..+ ++.....+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 34667788888777 689999999999998765 2222222 111 12222223333333 555
Q ss_pred HHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCC
Q 047659 88 DKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LS----PDLVQRLMSCLVDSNS 162 (619)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~ 162 (619)
+.+-.. +.+.+. +..- ..+...+..+...|++++|+..|+.+.+.... ++ ..++..++.+|...|+
T Consensus 86 ~~i~~~-~~~~~~---~l~~-----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~ 156 (378)
T 3q15_A 86 ETIETP-QKKLTG---LLKY-----YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ 156 (378)
T ss_dssp HHHHGG-GHHHHH---HHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcc-CCCCcc---HHHH-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC
Confidence 554221 111110 0000 04556777888999999999999999764211 22 3467788888899999
Q ss_pred hhHHHHHHHHHhhCCc----------cchHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CChhhHHHHHHHHHhcC
Q 047659 163 VGQYYKLCRAMRGKGF----------CVYEFLMNGLLRKGVIENAFHMHRQVIQRG----FV-PNIVTCNKILKRLCING 227 (619)
Q Consensus 163 ~~~A~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~ll~~~~~~~ 227 (619)
++.|+..+.++.+..+ .++..+..++...|++++|.+.+.++++.. .. ....++..+..+|...|
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 9999988888654211 114555556666666666666665554421 00 01123444444445555
Q ss_pred CcchHHHHHHHHHh-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 228 QIGNASSLFDVLLL-----VGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 228 ~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
++++|.+.|++... ..+. ...++..+...+.+.|++++|...+++..
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555544443 2111 13334444444444444444444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=106.64 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
.+..++..+...|++++|+..++++.+..+. +...+..++..+...|++++|...++++.+..| +. +..++..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555443322 444555555555555555555555555554444 11 4445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
.|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++....+ .+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555543 34445555555555566666666666665555422 2445555556666666666666666
Q ss_pred HHHHHh
Q 047659 271 YNLMME 276 (619)
Q Consensus 271 ~~~m~~ 276 (619)
++.+.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-12 Score=132.47 Aligned_cols=182 Identities=7% Similarity=-0.067 Sum_probs=122.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHH--------HhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMV--------IQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESV 132 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 132 (619)
|.++.++...+ ...|++++|...+++++ ..+|.+.+ ++..++.+|.+.|++++|+
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~--------------~~~~~a~~~~~~g~~~~A~ 453 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVE--------------LPLMEVRALLDLGDVAKAT 453 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSH--------------HHHHHHHHHHHHTCHHHHH
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchh--------------HHHHHHHHHHhcCCHHHHH
Confidence 44444444333 66777777777777777 65565555 6677777777777777777
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047659 133 EIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGF 209 (619)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 209 (619)
..|+++++.++. +...|..+..+|...|++++|++.|+++++.+| +. +..+..++...|++++ .+.++++++.+
T Consensus 454 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~- 530 (681)
T 2pzi_A 454 RKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN- 530 (681)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-
T ss_pred HHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-
Confidence 777777776544 667777777777777777777777777777777 22 7777777777777777 77777777765
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047659 210 VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK 263 (619)
Q Consensus 210 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (619)
+.+...|..+..++...|++++|.+.|++..+.++. +...+..+..++...++
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 556667777777777777777777777777654322 34556666666555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-10 Score=109.43 Aligned_cols=231 Identities=11% Similarity=-0.015 Sum_probs=131.8
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cc------
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD----LVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CV------ 180 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~------ 180 (619)
++...+..+...|++++|...+++.+...+..++. ++..+...+...|++++|...+++.....+ +.
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45566777888999999999999998865444433 456677888889999999999988765432 11
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC----Chh
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQR----GFV--P-NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP----NVV 249 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~ 249 (619)
+..+...+...|++++|.+.+++.++. +.. | ....+..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 445666667777777777777766553 111 1 12344455566666677777777776665432211 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD--LIIYS----ILIDGLFKAGRLKEGNELLLTALDRGLKL---DVVV 320 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 320 (619)
++..+...+...|++++|...++........++ ..... ..+..+...|++++|...++........+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455555566666666666666666543211111 11111 12223445566666666655554322110 1122
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Q 047659 321 FSSVMDAYVGIGDVGRAVQTYDRM 344 (619)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~ 344 (619)
+..+...+...|++++|...+++.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444455555555555555444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=108.41 Aligned_cols=169 Identities=11% Similarity=0.008 Sum_probs=111.0
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHH----------------HHHHHHccCChhHHHHHHHHHHHh
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQ----------------LIHVLLQSDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~ 93 (619)
++.+......+...|++++|+..|+.+.. |.++.++.. ++.++.+.|++++|...|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44555666677788888888888888776 666677777 777777888888888888888877
Q ss_pred cCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--hhHHHHHHH
Q 047659 94 FGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS--VGQYYKLCR 171 (619)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 171 (619)
+|.+.+ ++..++.+|...|++++|+..|+++++.+|. ++.++..+..+|...|+ .+.+...+.
T Consensus 84 ~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 84 APNNVD--------------CLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp CTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777666 6777777788888888888888887776554 67777777777654443 334455555
Q ss_pred HHhhCCcc--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 172 AMRGKGFC--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 172 ~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
.+....+. .+.....++...|++++|...|+++++. .|+.....
T Consensus 149 ~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 55433331 1334445555566666666666666654 34444333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-11 Score=111.35 Aligned_cols=139 Identities=9% Similarity=-0.038 Sum_probs=107.7
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR 102 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 102 (619)
.+-+++.+......+.+.|++++|+..|+.+.. |.+ +.++..++.++.+.|++++|...|++++..+|.++..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-- 88 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV-- 88 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh--
Confidence 445677888899999999999999999999987 556 6788999999999999999999999999998865331
Q ss_pred HHHhhcCCCcccHHHHHHHHHH--------cCChhhHHHHHHHHHhCCCCCCHHhH-----------------HHHHHHH
Q 047659 103 LFRDSLGDFGCDYSFLIENYVR--------IGKIDESVEIFAYMSDMGIYLSPDLV-----------------QRLMSCL 157 (619)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~ 157 (619)
..++..++.++.. .|++++|+..|+++++..|. ++... ..++.+|
T Consensus 89 ---------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 89 ---------PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp ---------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1278888999999 99999999999999987554 33333 3345555
Q ss_pred HhcCChhHHHHHHHHHhhCCc
Q 047659 158 VDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 158 ~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+.|++++|+..|+++++..|
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHccCHHHHHHHHHHHHHHCC
Confidence 555555555555555555444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-11 Score=112.83 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=119.2
Q ss_pred HHccCCchhHHHHHHHhhc----------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhc-----CCchhHHHHHHh
Q 047659 42 LIKTNNPTPAIQFFKWTHN----------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQF-----GKTYNFFRLFRD 106 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~ 106 (619)
....|++++|+.+|+.+.. +....++..++.++...|++++|...+++++... +.++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------- 83 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA------- 83 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH-------
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH-------
Confidence 3457888888888887776 2234567889999999999999999999999863 22111
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC-----C--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG-----I--YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK--- 176 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 176 (619)
...++..++..|...|++++|++.|++++... + +....++..++.++...|++++|+..++++.+.
T Consensus 84 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 84 ----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp ----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11278999999999999999999999997641 1 224567888999999999999999999998765
Q ss_pred -----Cc---cchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 177 -----GF---CVYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 177 -----~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
.+ ..+..+..++...|++++|.+.++++++.
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 12777778888888888888888877764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-12 Score=103.18 Aligned_cols=136 Identities=13% Similarity=0.026 Sum_probs=99.6
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
+..+|+++.|+..++.+.. |.++..+..++.++.+.|++++|+..|+++++.+|.++. +|..++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~--------------a~~~lg 72 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK--------------AHRFLG 72 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHH
Confidence 4456777888888887776 566677778888888888888888888888888777766 778888
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH-HHHHhhCCc-cc--hHHHHHHHHhcC
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKL-CRAMRGKGF-CV--YEFLMNGLLRKG 192 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~-~~--~~~l~~~~~~~~ 192 (619)
.+|.+.|++++|+..|+++++.+|. ++.++..++.+|.+.|++++|.+. ++++.+.+| ++ |......+...|
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888876554 677788888888888887766554 467777666 22 444455554444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-10 Score=107.51 Aligned_cols=231 Identities=9% Similarity=-0.035 Sum_probs=128.5
Q ss_pred HHHHHHH--HccCChhHHHHHHHHHHHhcCC---chhHHHHHHhhcCCCcccHHHHHHH--HHHcCChhhHH--------
Q 047659 68 AQLIHVL--LQSDMRDVASHVFDKMVIQFGK---TYNFFRLFRDSLGDFGCDYSFLIEN--YVRIGKIDESV-------- 132 (619)
Q Consensus 68 ~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~-------- 132 (619)
..+-.++ ...+++++|..+++++...... +.+.+ .|..++.. ..-.+.+..+.
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~------------~yy~l~~~r~~~~~~~~~~~~~~~~~~~~ 81 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLL------------IYYSLMCFRHQLMLDYLEPGKTYGNRPTV 81 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHH------------HHHHHHHHHHHHHHHTCCC--------CH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHH------------HHHHHHHHHHHHHHhhcCcccccccccch
Confidence 3444455 7899999999999998765332 12211 33333322 11223333333
Q ss_pred -HHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---------cchHHHHHHHHhcCCHHHHH
Q 047659 133 -EIFAYMSDMGIYLSP----DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 133 -~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~ 198 (619)
+.++.+.....+.+. ..+...+..+...|++++|+..|+++.+... ..+..+..++...|+++.|.
T Consensus 82 ~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 82 TELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 666666432111111 1233455566778888888888888765422 12666777777777777777
Q ss_pred HHHHHHHHCCC-----C-CChhhHHHHHHHHHhcCCcchHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHH
Q 047659 199 HMHRQVIQRGF-----V-PNIVTCNKILKRLCINGQIGNASSLFDVLLLV----GPK-PNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 199 ~~~~~~~~~~~-----~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a 267 (619)
..+.++.+... . ....+++.+...|...|++++|.+.|++.... +.. ....+++.+...|...|++++|
T Consensus 162 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 77777665310 1 11334556666666677777777766665532 100 1123455566666666666666
Q ss_pred HHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 268 FQLYNLMME-----MDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 268 ~~~~~~m~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
.+.|++..+ .... ...++..+...+.+.|++++|...+++..+
T Consensus 242 ~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666554 2211 244555555666666666666666665554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-09 Score=99.45 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=181.1
Q ss_pred hHHHHHHHHHccCCc-hhHHHHHHHhhc--CCCCccHHHHHHHHHccC--ChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 34 QANAILANLIKTNNP-TPAIQFFKWTHN--CVSSPNIAQLIHVLLQSD--MRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
.+...+.+..+.|.+ ++|++.++.++. |.+..+|.....++...| .+++++..++.++..+|++..
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~--------- 104 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ--------- 104 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---------
Confidence 344444444555554 699999999998 888899999999999999 999999999999999999877
Q ss_pred CCCcccHHHHHHHH----HHc---CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh--HHHHHHHHHhhCCc-
Q 047659 109 GDFGCDYSFLIENY----VRI---GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG--QYYKLCRAMRGKGF- 178 (619)
Q Consensus 109 ~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~- 178 (619)
+|+.-...+ ... +++++++.+++.+++.+++ +..+|+....++.+.|.++ ++++.++++++.++
T Consensus 105 -----aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 105 -----IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp -----HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred -----HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence 455444444 444 7899999999999998776 9999999999999999988 99999999999988
Q ss_pred cc--hHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch-HHHHHHHHHhCC--CCCC
Q 047659 179 CV--YEFLMNGLLRKGV------IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN-ASSLFDVLLLVG--PKPN 247 (619)
Q Consensus 179 ~~--~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-A~~~~~~~~~~~--~~~~ 247 (619)
+. |......+...+. ++++++.+..++... +.|...|+.+-..+.+.|+... +....+++...+ ...+
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s 257 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS 257 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC
Confidence 33 6666666666666 888999999988886 7888889988888888887544 445666655432 1235
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 248 VVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 248 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
...+..+..+|.+.|+.++|.++++.+.+
T Consensus 258 ~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 258 SFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 67777888888888888888888888875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-11 Score=104.31 Aligned_cols=161 Identities=9% Similarity=-0.000 Sum_probs=109.4
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH----------------HHHHHHHcCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF----------------LIENYVRIGK 127 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~ 127 (619)
...+...+..+...|++++|...|++++..+|.+.+ +|.. ++.+|.+.|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE--------------MYYWTNVDKNSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH--------------HHHHHHSCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH--------------HHHHhhhcchhhhhHHHHHHHHHHHHHCCC
Confidence 445667788899999999999999999999888766 4444 7888888888
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCC--HHHHHHHHH
Q 047659 128 IDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGV--IENAFHMHR 202 (619)
Q Consensus 128 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~--~~~A~~~~~ 202 (619)
+++|+..|++.++..|. ++..+..++.++...|++++|+..|+++++.+| +. +..+..++...|+ ...+...+.
T Consensus 70 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888888888877655 777888888888888888888888888887777 22 6666666554433 233344444
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
.+.. ..|....+.....++...|++++|...|++.++
T Consensus 149 ~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 149 KLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp ---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4331 122222333334444555666666666666655
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=106.74 Aligned_cols=107 Identities=7% Similarity=-0.045 Sum_probs=91.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.++..+...+..+.+.|++++|...|++++..+|.+... ..++..++.+|.+.|++++|+..|+++++
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA-----------ADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch-----------HHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 5677888899999999999999999999999988876210 11788999999999999999999999998
Q ss_pred CCCC-C-CHHhHHHHHHHHHh--------cCChhHHHHHHHHHhhCCc
Q 047659 141 MGIY-L-SPDLVQRLMSCLVD--------SNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~-~-~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~ 178 (619)
..|. | .+.++..++.++.. .|++++|+..|+++++..|
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 7553 2 25678888899988 9999999999999999888
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.3e-11 Score=109.49 Aligned_cols=161 Identities=14% Similarity=0.029 Sum_probs=112.2
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC------CC-CCCH
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM------GI-YLSP 147 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~ 147 (619)
...|++++|...|++++....... ....|....++..++..|...|++++|+..++++++. +. +...
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTS------GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVA 85 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHH------CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 467899999999999988521100 0000111227889999999999999999999999764 11 2245
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhC--------Cc---cchHHHHHHHHhcCCHHHHHHHHHHHHHC------C-C
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGK--------GF---CVYEFLMNGLLRKGVIENAFHMHRQVIQR------G-F 209 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~ 209 (619)
.++..++.+|...|++++|++.++++.+. .+ ..+..+..++...|++++|...++++++. + .
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 67888999999999999999999987765 23 12667777777777777777777777664 1 1
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 210 VPNIVTCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 210 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
+....++..+...+...|++++|...+++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22344566666667777777777777766654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=100.10 Aligned_cols=160 Identities=11% Similarity=0.010 Sum_probs=83.6
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+...+..+.+.|++++|...|++++..+|.+.. ++..++.++.+.|++++|+..|+++....+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p- 71 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD--------------VKLAKADCLLETKQFELAQELLATIPLEYQ- 71 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH--------------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-
Confidence 34455555666666666666666666665555544 555666666666666666666666554433
Q ss_pred CCHHhHHHHHHH-HHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHH
Q 047659 145 LSPDLVQRLMSC-LVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVP-NIVTCNKI 219 (619)
Q Consensus 145 ~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l 219 (619)
++..+...... +...+....|+..+++.++.+| ++ +..+..++...|++++|...++.+++....+ +...+..+
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 72 -DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred -ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 33332222211 1122222335555555555555 22 5555555555555555555555555543211 23355555
Q ss_pred HHHHHhcCCcchHHHHHHHHH
Q 047659 220 LKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~ 240 (619)
..++...|+.++|...|++.+
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHH
Confidence 566666666666666655543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-10 Score=101.35 Aligned_cols=187 Identities=9% Similarity=-0.075 Sum_probs=126.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCC---ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSS---PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
+++.+......+.+.|++++|+..|+.+.. |.++ .++..++.++.+.|++++|+..|+++++.+|.+....
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~---- 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID---- 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH----
Confidence 667778888889999999999999999987 4443 5788999999999999999999999999998875421
Q ss_pred hhcCCCcccHHHHHHHHHH------------------cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047659 106 DSLGDFGCDYSFLIENYVR------------------IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYY 167 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 167 (619)
.++..++.++.+ .|++++|+..|+++++..|. ++.++........
T Consensus 79 -------~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~--------- 141 (225)
T 2yhc_A 79 -------YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVF--------- 141 (225)
T ss_dssp -------HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHH---------
T ss_pred -------HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHH---------
Confidence 034445555544 46677777777777765443 2222211111000
Q ss_pred HHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 047659 168 KLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPN---IVTCNKILKRLCINGQIGNASSLFDVLLLVGP 244 (619)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 244 (619)
+..... .....+...+...|+++.|+..++.+++.. +.+ ...+..+..++.+.|++++|.+.++.+...++
T Consensus 142 -~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 142 -LKDRLA----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHH----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 000000 001345566777888888888888887763 222 24567777888888888888888887776543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-11 Score=100.16 Aligned_cols=142 Identities=7% Similarity=-0.115 Sum_probs=99.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
|+.++...|++++|+..+++++...|..+. .+..++..|.+.|++++|++.|+++++..|. ++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~--------------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a 67 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSI--------------KGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKA 67 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHT--------------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 556667778888888888888776555444 6778888888888888888888888887655 7888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHh
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHM-HRQVIQRGFVPNIVTCNKILKRLCI 225 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~ll~~~~~ 225 (619)
|..++.+|.+.|++++|+..|+++++.+| ++ +..+..++...|++++|.+. ++++++.. +.+..+|......+..
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 88888888888888888888888877776 22 66667777777776655443 46666653 4455556555555555
Q ss_pred cC
Q 047659 226 NG 227 (619)
Q Consensus 226 ~~ 227 (619)
.|
T Consensus 147 ~G 148 (150)
T 4ga2_A 147 EG 148 (150)
T ss_dssp CC
T ss_pred hC
Confidence 44
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.8e-11 Score=123.26 Aligned_cols=148 Identities=10% Similarity=-0.004 Sum_probs=126.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR 222 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 222 (619)
+...+..++.++.+.|++++|+..|+++++.+| +. +..+..++...|++++|.+.|+++++.. +.+...+..+..+
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAAT 510 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 678899999999999999999999999999888 33 8899999999999999999999999986 5677889999999
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 047659 223 LCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD-LIIYSILIDGLFKAGR 298 (619)
Q Consensus 223 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 298 (619)
+...|++++ .+.|++..+.++. +...|..+..++.+.|++++|.+.|++..+. .|+ ...+..+..++...++
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999999 9999999986544 6778999999999999999999999998875 344 5667677777655443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=100.05 Aligned_cols=158 Identities=9% Similarity=0.032 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+......+.+.|++++|+..|+.+.. |.++.++..++.++.+.|++++|...|++++...| ++.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~----------- 74 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS----------- 74 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH-----------
Confidence 4566777888999999999999999887 89999999999999999999999999999998877 544
Q ss_pred CcccHHHHHHH-HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c--chHHH
Q 047659 111 FGCDYSFLIEN-YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C--VYEFL 184 (619)
Q Consensus 111 ~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--~~~~l 184 (619)
.+..+... +...++..+|+..+++.++..|. ++..+..+..++...|++++|+..|+++++.+| + .+..+
T Consensus 75 ---~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 75 ---YKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp ---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred ---HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 22222222 22334455689999999987655 789999999999999999999999999999987 2 38889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
..++...|+.++|...+++.+.
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999988764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-10 Score=106.34 Aligned_cols=164 Identities=11% Similarity=-0.023 Sum_probs=124.3
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...+..++..+.+.|++++|...|++++..+|.+.+ ++..++..+.+.|++++|+..++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE--------------IGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH--------------HHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh--------------HHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 666677788888888888888888888888888888776 778888888888888888888888876
Q ss_pred CCCCCCHHh-HHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhh
Q 047659 141 MGIYLSPDL-VQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFV-PNIVT 215 (619)
Q Consensus 141 ~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 215 (619)
..+ +... .......+.+.++.+.|+..+++.....| +. +..+...+...|++++|.+.+..+++.... .+...
T Consensus 180 ~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 QDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp GGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred hhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 544 3333 33333446677778888888888888877 33 777888888888888888888888877421 12567
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 216 CNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 216 ~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
+..++..+...|+.++|...+.+..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 7788888888888888887777654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=8.8e-10 Score=102.91 Aligned_cols=175 Identities=10% Similarity=-0.076 Sum_probs=109.1
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC
Q 047659 47 NPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG 126 (619)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 126 (619)
++++|.+.|+.+ +.++...|++++|...|++++...+..-+. +....+|..++.+|.+.|
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~a~~~~~lg~~~~~~g 91 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE--------DEAGNTYVEAYKCFKSGG 91 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHCC
Confidence 477788877766 356778899999999998888753211000 000117788888888899
Q ss_pred ChhhHHHHHHHHHhCCCCC-C----HHhHHHHHHHHHhc-CChhHHHHHHHHHhhCCc---------cchHHHHHHHHhc
Q 047659 127 KIDESVEIFAYMSDMGIYL-S----PDLVQRLMSCLVDS-NSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRK 191 (619)
Q Consensus 127 ~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~ 191 (619)
++++|+..|++.++..+.. + ..++..+..+|... |++++|+..|++.++..+ ..+..+...+...
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 9999998888887542211 1 34566777777775 777777777777665433 1145556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 192 GVIENAFHMHRQVIQRGFVPNIV------TCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 192 ~~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
|++++|+..++++.+........ .+..+..++...|++++|...|++...
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666553221111 344455555556666666666666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-10 Score=107.03 Aligned_cols=161 Identities=11% Similarity=-0.027 Sum_probs=140.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+......+...|++++|+..|+.+.. |.++.++..++.++.+.|++++|...+++++..+|....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~--------- 186 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY--------- 186 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH---------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH---------
Confidence 344566677778899999999999999988 888999999999999999999999999999998885432
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--c--hHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--V--YEF 183 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~--~~~ 183 (619)
........+.+.++.++|+..+++.+...|. ++..+..+...|...|++++|+..|.++++.+| + . +..
T Consensus 187 -----~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 187 -----QGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp -----HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred -----HHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 4455555677889999999999999998665 899999999999999999999999999999888 2 3 899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 047659 184 LMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
++..+...|+.++|...+++.+.
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999887764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.18 E-value=9.4e-10 Score=98.29 Aligned_cols=189 Identities=7% Similarity=-0.067 Sum_probs=137.2
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..+..++..+.+.|++++|+..|++++...|.++.. ..++..++.+|.+.|++++|+..|+++++..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS-----------QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 44567788899999999999999999999988765321 1178889999999999999999999999876
Q ss_pred CCCC--HHhHHHHHHHHHh------------------cCChhHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHHHHHHHH
Q 047659 143 IYLS--PDLVQRLMSCLVD------------------SNSVGQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 143 ~~~~--~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~ 201 (619)
|... +.++..+..++.+ .|++++|+..|+++++..|+. +...+... ...+.
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~--------l~~~~ 143 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR--------LVFLK 143 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH--------HHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH--------HHHHH
Confidence 6522 1356666666654 567788888888888887733 21111000 00000
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047659 202 RQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN--VVTFSTLINAFCKEAKLEKAFQLYNLMMEMD 278 (619)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 278 (619)
..+ ......+...|.+.|++++|...|+.+.+..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 144 ~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 144 DRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 110 11123566788899999999999999998644321 2568889999999999999999999998864
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-08 Score=94.57 Aligned_cols=219 Identities=8% Similarity=0.036 Sum_probs=154.9
Q ss_pred ccCC-hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC--ChhhHHHHHHHHHhCCCCCCHHhHHH
Q 047659 76 QSDM-RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG--KIDESVEIFAYMSDMGIYLSPDLVQR 152 (619)
Q Consensus 76 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ 152 (619)
+.|. .++|+..+++++..+|.... +|+.-...+...| ++++++++++.++..+|+ +..+|+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~t--------------aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~ 108 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYT--------------IWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNY 108 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHH--------------HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHH
Confidence 4444 46899999999999998877 7777777888888 999999999999988776 7778877
Q ss_pred HHHHH----Hhc---CChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 153 LMSCL----VDS---NSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE--NAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 153 l~~~~----~~~---~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
...++ ... +++++++++++++.+.+| +. |..-.-++...|.++ ++++.++.+++.+ +.|...|+.-.
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~ 187 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 76666 555 678888888888888887 32 666666666677777 8888888888776 66777777766
Q ss_pred HHHHhcCC------cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 047659 221 KRLCINGQ------IGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLE-KAFQLYNLMMEMD--LVPDLIIYSILID 291 (619)
Q Consensus 221 ~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~--~~~~~~~~~~ll~ 291 (619)
.++...+. ++++++.++.++...+. |...|+.+...+.+.|+.. .+..+...+.+.+ -..+...+..+..
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 66666655 66677777777665443 6667777766666666533 3444555544332 1235566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047659 292 GLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~ 311 (619)
.+.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 77777777777777777665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.5e-10 Score=102.68 Aligned_cols=196 Identities=8% Similarity=-0.070 Sum_probs=144.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc----CCC----CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN----CVS----SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
.+......+...|++++|++.|+.+.. ..+ ..++..++.++...|++++|...|++++...+..-+.
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~----- 113 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF----- 113 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH-----
Confidence 456666677789999999999998876 112 4577889999999999999999999999865432110
Q ss_pred hhcCCCcccHHHHHHHHHHc-CChhhHHHHHHHHHhCCCCC-C----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc
Q 047659 106 DSLGDFGCDYSFLIENYVRI-GKIDESVEIFAYMSDMGIYL-S----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (619)
.....++..++.+|... |++++|+..|++.++..+.. + ..++..++.++.+.|++++|+..|+++.+..++
T Consensus 114 ---~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 114 ---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred ---HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 00011788999999996 99999999999998753321 1 356888999999999999999999999987762
Q ss_pred ----------chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHH--hcCCcchHHHHHHHH
Q 047659 180 ----------VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV------TCNKILKRLC--INGQIGNASSLFDVL 239 (619)
Q Consensus 180 ----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~--~~~~~~~A~~~~~~~ 239 (619)
.+..+..++...|+++.|...+++.++.. |+.. .+..++..+. ..+++++|+..|+.+
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 14567788889999999999999988753 2211 2333444443 234556666666555
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=7.8e-09 Score=94.18 Aligned_cols=251 Identities=10% Similarity=0.006 Sum_probs=154.1
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
..-+|+++. -+....-.|++..++.-...+..........-+.+++...|+++... ..++.
T Consensus 10 ~~~~~~~lf-~ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~-------- 70 (310)
T 3mv2_B 10 HSQDPMDYF-NIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD----------PTSKL-------- 70 (310)
T ss_dssp -----CCTH-HHHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC----------SSSTT--------
T ss_pred cCCCcHHHH-HHHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC----------CCCHH--------
Confidence 344666665 35566678999988885544432222233344557778888777421 11111
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYE 182 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~ 182 (619)
..+. .+...|... .|+..|++....+ .++..++..++.++...|++++|++++.+.+..++ +.+.
T Consensus 71 ----~~a~-~~la~~~~~----~a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~ 140 (310)
T 3mv2_B 71 ----GKVL-DLYVQFLDT----KNIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLL 140 (310)
T ss_dssp ----HHHH-HHHHHHHTT----TCCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHH
T ss_pred ----HHHH-HHHHHHhcc----cHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHH
Confidence 0022 222233332 2778888887654 44666677888888888999999999988877764 2277
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHH--HHhcC--CcchHHHHHHHHHhCCCCCChhhHHH
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVP-----NIVTCNKILKR--LCING--QIGNASSLFDVLLLVGPKPNVVTFST 253 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~ll~~--~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (619)
.++.++.+.|+++.|.+.++.+.+. .| +..+...++.+ ....| ++.+|..+|+++... .|+..+...
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~l 216 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLG 216 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHH
Confidence 7888888888888888888888776 44 24455555544 22233 788888888887654 334223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047659 254 LINAFCKEAKLEKAFQLYNLMMEMD---------LVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRG 313 (619)
Q Consensus 254 l~~~~~~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 313 (619)
++.++.+.|++++|.+.++.+.+.. -+-+..++..+|......|+ +|.+++.++.+..
T Consensus 217 Lln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 217 LLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 4447778888888888887665421 02255566455555555665 6777787777764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-10 Score=116.29 Aligned_cols=157 Identities=11% Similarity=-0.043 Sum_probs=119.0
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENY 122 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (619)
.|++++|++.|+.+.. |.+..++..++.++.+.|++++|...|+++++.+|.... ++..++.+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE--------------AVARLGRVR 67 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH--------------HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHH
Confidence 4788899999998887 777888999999999999999999999999998887766 788899999
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhc---CCHHH
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRK---GVIEN 196 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~---~~~~~ 196 (619)
...|++++|.+.|++.++..+. +...+..+..+|.+.|++++|++.|+++.+.+| +. +..+..++... |+.++
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH
Confidence 9999999999999999887654 788899999999999999999999999988887 33 88888888888 99999
Q ss_pred HHHHHHHHHHCCCCCChhhHH
Q 047659 197 AFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 197 A~~~~~~~~~~~~~~~~~~~~ 217 (619)
|.+.++++++.+ +.+...+.
T Consensus 147 A~~~~~~al~~~-p~~~~~~~ 166 (568)
T 2vsy_A 147 LSAQVRAAVAQG-VGAVEPFA 166 (568)
T ss_dssp HHHHHHHHHHHT-CCCSCHHH
T ss_pred HHHHHHHHHhcC-CcccChHH
Confidence 999999998875 33334443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9.1e-10 Score=89.22 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=82.6
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
++..++..+...|++++|...+++++...|.+.. .+..++..+...|++++|...++++...++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE--------------AWYNLGNAYYKQGDYDEAIEYYQKALELDPR- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-
Confidence 4555666666667777777777777666555443 5566666666677777777777776665433
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
++..+..++..+...|++++|...++++.+..| +. +..++.++...|++++|...++.+.+.
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 556666666667777777777777776666555 22 566666667777777777777766654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.6e-10 Score=92.87 Aligned_cols=104 Identities=10% Similarity=-0.049 Sum_probs=84.4
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+..++..++..+.+.|++++|...|++++..+|.++. .|..++.+|...|++++|+..|+++++
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--------------~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD--------------YIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 666677888888888888888888888888888887766 778888888888888888888888888
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (619)
..|. ++..|..+..+|.+.|++++|+..|+++++..|+
T Consensus 99 l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 99 LGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred hCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7655 6778888888888888888888888888777663
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-09 Score=87.13 Aligned_cols=126 Identities=12% Similarity=0.126 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
++..++..+...|++++|..+++++.+.++. +...+..++..+...|++++|...++++...++ +. +..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3455555666666666666666666554332 455555566666666666666666666655555 21 5555556666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665553 33455555566666666666666666666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-09 Score=86.99 Aligned_cols=103 Identities=8% Similarity=-0.039 Sum_probs=55.3
Q ss_pred HHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcc
Q 047659 36 NAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGC 113 (619)
Q Consensus 36 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (619)
......+.+.|++++|++.|+.+.. |.++.+|..++.++.+.|++++|+..|+++++.+|....
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------- 82 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK-------------- 82 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH--------------
Confidence 3444445555555555555555554 555555555555555555555555555555555555444
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
+|..++.+|...|++++|++.|+++++..|. ++.++..+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 4555555555555555555555555554433 44444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.07 E-value=7.1e-07 Score=89.23 Aligned_cols=409 Identities=11% Similarity=0.041 Sum_probs=214.6
Q ss_pred HcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCC-HHHHHH
Q 047659 124 RIG-KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGV-IENAFH 199 (619)
Q Consensus 124 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~-~~~A~~ 199 (619)
+.| ++..|+.+|++++.. -|. |+++.+..+|++.+..-|++ |...+....+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 377777777777653 222 67777777777777766633 5555555554442 344556
Q ss_pred HHHHHHHC-CC-CCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 200 MHRQVIQR-GF-VPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNL 273 (619)
Q Consensus 200 ~~~~~~~~-~~-~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 273 (619)
+|+.++.. |. ..+...|...+..+.. .++.+.+.++|+..+.. |..+ +..+-..| ..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~---~~~lw~~Y-------------~~ 132 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGS---LSELWKDF-------------EN 132 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTT---HHHHHHHH-------------HH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhh---HHHHHHHH-------------HH
Confidence 66666554 32 2345566666554432 34556666677766652 1111 11111111 11
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--C-----HHHHHHHHHHHHh
Q 047659 274 MMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIG--D-----VGRAVQTYDRMLN 346 (619)
Q Consensus 274 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~~~ 346 (619)
+... .+..+...++... .+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++..
T Consensus 133 fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~ 207 (493)
T 2uy1_A 133 FELE---LNKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD 207 (493)
T ss_dssp HHHH---HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH---hccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH
Confidence 1110 0111111111111 1123333444443332100113345555544433221 1 2345667777666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 047659 347 GGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVC 426 (619)
Q Consensus 347 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 426 (619)
. .+.+...|...+..+.+.|+.+.|..+++..... |....... .|....+.++. ++.+.+.-....
T Consensus 208 ~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~---- 273 (493)
T 2uy1_A 208 S-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGE---- 273 (493)
T ss_dssp H-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC-------
T ss_pred c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhc----
Confidence 4 2445667777777777777778888888777766 33222111 22222111111 222221100000
Q ss_pred HHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCCHH
Q 047659 427 SLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIAS-QGSLS 505 (619)
Q Consensus 427 ~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 505 (619)
.+.+ .. . ........|...+....+.++.+.|..+|+.. ... ..+...|......-.. .++.+
T Consensus 274 -------~~~~-----~~-~-~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 274 -------AESA-----EK-V-FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSH
T ss_pred -------cchh-----hh-h-cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChH
Confidence 0000 00 0 00002245666677666788899999999988 321 2233444332222222 34799
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047659 506 SAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLT 585 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (619)
.|..+|+...+.- +-+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998852 2235556777887888999999999999973 267889999998888999999999998887
Q ss_pred h--CC---CCCC------------HHHHHHHHHHHhhc
Q 047659 586 D--RG---LEPD------------IITYNTIICGYCSL 606 (619)
Q Consensus 586 ~--~g---~~p~------------~~~~~~ll~~~~~~ 606 (619)
+ .+ -.|- .-++..+++.|.-.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~ 449 (493)
T 2uy1_A 412 DAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFL 449 (493)
T ss_dssp HHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBT
T ss_pred HHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhh
Confidence 4 11 1111 25678888888543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-09 Score=95.46 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcC
Q 047659 83 ASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LSPDLVQRLMSCLVDSN 161 (619)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 161 (619)
|+..|++.+...+.... .+..++.++...|++++|++++.+.+..++. -+...+..++.++.+.|
T Consensus 85 a~~~l~~l~~~~~~~~~--------------~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPY--------------ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN 150 (310)
T ss_dssp CCHHHHHTTTTSCCCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCcH--------------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC
Confidence 66777777665433222 4457777777788888888888887776652 25667777778888888
Q ss_pred ChhHHHHHHHHHhhCCc------cc-hHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcc
Q 047659 162 SVGQYYKLCRAMRGKGF------CV-YEFLMNG--LLRKG--VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIG 230 (619)
Q Consensus 162 ~~~~A~~~~~~~~~~~~------~~-~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 230 (619)
+.+.|.+.++++.+..+ +. ...++.+ ....| ++..|..+|+++.+. .|+..+...++.++...|+++
T Consensus 151 r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~ 228 (310)
T 3mv2_B 151 NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIA 228 (310)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHH
Confidence 88888888888777666 22 4444444 22233 788888888887655 344333344444777788888
Q ss_pred hHHHHHHHHHhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 231 NASSLFDVLLLVG---------PKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 231 ~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
+|.+.++.+.+.. -+.++.+...++......|+ +|.+++.++.+.
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 8888887655421 02256666555555555665 777888888775
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-09 Score=92.82 Aligned_cols=172 Identities=12% Similarity=-0.061 Sum_probs=106.4
Q ss_pred hHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC---
Q 047659 50 PAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG--- 126 (619)
Q Consensus 50 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 126 (619)
+|++.|+.+.+..++.++..++.++...+++++|...|+++.+.+ ++. ++..|...|.. +
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~--------------a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGD--------------ALALLAQLKIR-NPQQ 66 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHH--------------HHHHHHHHTTS-STTS
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHH--------------HHHHHHHHHHc-CCCC
Confidence 456666666656667777777777777777777777777776542 222 56666666666 5
Q ss_pred -ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc-----cchHHHHHHHHh----cC
Q 047659 127 -KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF-----CVYEFLMNGLLR----KG 192 (619)
Q Consensus 127 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~----~~ 192 (619)
++++|+..|++..+.+ ++.++..+...|.. .+++++|+++|++..+.++ +.+..+..+|.. .+
T Consensus 67 ~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 67 ADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 6777777777776543 56666667777665 6667777777777766665 125666666665 55
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-C-----CcchHHHHHHHHHhCC
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN-G-----QIGNASSLFDVLLLVG 243 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~A~~~~~~~~~~~ 243 (619)
++++|..++++..+. ..+...+..+...|... | ++++|...|+...+.|
T Consensus 144 d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp CHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666666666666655 22334455555555432 2 5566666666655543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-09 Score=110.64 Aligned_cols=153 Identities=11% Similarity=-0.026 Sum_probs=120.5
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC 156 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (619)
.|++++|...|+++++.+|.+.. .+..++..|.+.|++++|++.|++.++..+. +...+..++.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFV--------------AWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRV 66 (568)
T ss_dssp -------------------CCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 58899999999999998887766 8899999999999999999999999997655 78899999999
Q ss_pred HHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCcc
Q 047659 157 LVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN---GQIG 230 (619)
Q Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~ 230 (619)
|...|++++|++.++++.+.+| +. +..+..++...|++++|.+.++++.+.. +.+...+..+...+... |+.+
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHH
Confidence 9999999999999999999888 33 8899999999999999999999999885 56678888999999999 9999
Q ss_pred hHHHHHHHHHhCCCC
Q 047659 231 NASSLFDVLLLVGPK 245 (619)
Q Consensus 231 ~A~~~~~~~~~~~~~ 245 (619)
+|.+.+++..+.++.
T Consensus 146 ~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 146 VLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCc
Confidence 999999999886543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-08 Score=90.85 Aligned_cols=178 Identities=9% Similarity=-0.034 Sum_probs=137.8
Q ss_pred HHHHHHHHc-cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccC-ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 36 NAILANLIK-TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSD-MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 36 ~~~~~~~~~-~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
...+....+ .+..++|+++++.++. |.+..+|.....++...| .+++++..++.++..+|++..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~------------ 124 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ------------ 124 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH------------
Confidence 333444444 4455789999999888 888888988888888888 599999999999999998877
Q ss_pred cccHHHHHHHHHHc-C-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh--------HHHHHHHHHhhCCc-cc
Q 047659 112 GCDYSFLIENYVRI-G-KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG--------QYYKLCRAMRGKGF-CV 180 (619)
Q Consensus 112 ~~~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~-~~ 180 (619)
+|+.-...+.+. + ++++++++++.+++.+++ |..+|+....++.+.+.++ ++++.++++++.++ +.
T Consensus 125 --aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~ 201 (349)
T 3q7a_A 125 --VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN 201 (349)
T ss_dssp --HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred --HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence 666666666666 6 888999999999988766 8888888777777766666 88888888888888 33
Q ss_pred --hHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCc
Q 047659 181 --YEFLMNGLLRKGV-------IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 181 --~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 229 (619)
|+.....+...+. ++++++.+.+++... +.|...|+.+-..+.+.|+.
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 7777666666665 678888888888775 67788888777777666654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=87.10 Aligned_cols=103 Identities=8% Similarity=-0.068 Sum_probs=85.1
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.....+...+..+.+.|++++|+..|+++++.+|.+.. +|..++.+|.+.|++++|+..|+++++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI--------------LYSNRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 344456677888888888888888888888888887766 788888888888888888888888888
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.++. ++.+|..++.++...|++++|++.|+++++.+|
T Consensus 76 ~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 76 LDSK-FIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 7655 778888888888888888888888888888777
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-10 Score=101.03 Aligned_cols=199 Identities=8% Similarity=-0.131 Sum_probs=150.9
Q ss_pred ccCCchhHHHHHHHhhc--CCCCccHHHH-------HHHHHccCChhHHHHHHHHHHHhcCCchhHHHH-------HHhh
Q 047659 44 KTNNPTPAIQFFKWTHN--CVSSPNIAQL-------IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRL-------FRDS 107 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~--~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~ 107 (619)
..++++.|++.|..+.. |..+.+|..+ ..++.+.++..++...+.+.+...|......-. +.-.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 58999999999999998 9999999999 789999999999999999988866654331000 0000
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYE 182 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~ 182 (619)
....+.++..++..+...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...+... +++.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH
Confidence 0011225677888999999999999999999875543 33 777778889999999999999987766532 2377
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPN--IVTCNKILKRLCINGQIGNASSLFDVLLLVGP 244 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 244 (619)
.+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....+
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 888888899999999999998875432143 34566677778888889999999888887533
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-07 Score=91.15 Aligned_cols=77 Identities=9% Similarity=0.032 Sum_probs=41.1
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 047659 468 RATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFK 547 (619)
Q Consensus 468 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 547 (619)
+.+.|..+|+...+.. +.+...+...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4666666666554431 1223334444555555666666666666652 134555555555555566666666555
Q ss_pred HHH
Q 047659 548 LME 550 (619)
Q Consensus 548 ~~~ 550 (619)
++.
T Consensus 409 ~~~ 411 (493)
T 2uy1_A 409 QKM 411 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-07 Score=88.07 Aligned_cols=172 Identities=6% Similarity=-0.014 Sum_probs=133.3
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC-ChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG-KIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
...+..++|+..+++++..+|+... +|+.-...+...| .+++++.+++.++..+|+ +..+|+..
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~yt--------------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR 129 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYT--------------VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHR 129 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHH--------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3455667999999999999999887 7777777778888 599999999999998877 89999998
Q ss_pred HHHHHhc-C-ChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 154 MSCLVDS-N-SVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE--------NAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 154 ~~~~~~~-~-~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
..++... + ++++++++++++++.+| +. |....-++...|.++ ++++.++++++.. +.|..+|+...
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~ 208 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRW 208 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 8888776 7 88999999999999998 33 555555555555555 8888888888876 67888888887
Q ss_pred HHHHhcCC-------cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047659 221 KRLCINGQ-------IGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK 263 (619)
Q Consensus 221 ~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (619)
.++.+.++ ++++++.++++....+. |...|+.+-..+.+.|.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 77777765 46777777777765443 66777766666655554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-09 Score=90.75 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=105.2
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
+...|++++|+..++.+.. |.+..++..++.++...|++++|...|++++..+|.+.. .+..++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~la 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE--------------LYAALA 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH--------------HHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--------------HHHHHH
Confidence 4568999999999998887 778899999999999999999999999999999887766 778888
Q ss_pred HH-HHHcCCh--hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 120 EN-YVRIGKI--DESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 120 ~~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+ +...|++ ++|+..|+.+++..+. ++..+..++.++...|++++|+..|+++.+..|
T Consensus 86 ~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 86 TVLYYQASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88 8899998 9999999999987654 788899999999999999999999999999888
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-08 Score=86.82 Aligned_cols=175 Identities=11% Similarity=-0.008 Sum_probs=110.8
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHHHHhcC----CHHHHHHHHHHH
Q 047659 130 ESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLRKG----VIENAFHMHRQV 204 (619)
Q Consensus 130 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~----~~~~A~~~~~~~ 204 (619)
+|.+.|++..+.+ ++.++..+...|...+++++|+.+|++..+.+. +.+..+...|.. + ++++|.++++..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4666677776643 667777777777777777777777777766654 336666666665 5 677777777777
Q ss_pred HHCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 047659 205 IQRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPK-PNVVTFSTLINAFCK----EAKLEKAFQLYNLMM 275 (619)
Q Consensus 205 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~ 275 (619)
.+.| +...+..+...|.. .+++++|...|++..+.|+. .++..+..+...|.. .+++++|...|+...
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6654 55566666666655 56777777777777664331 125556666666666 666777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 047659 276 EMDLVPDLIIYSILIDGLFKA-G-----RLKEGNELLLTALDRG 313 (619)
Q Consensus 276 ~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 313 (619)
+. ..+...+..+...|... | +.++|...|+...+.|
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 65 12333455555555432 2 6677777777766665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-09 Score=98.79 Aligned_cols=192 Identities=8% Similarity=-0.030 Sum_probs=123.5
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+...+..++..+...|++++|...|++++..+|.+.. ++..++.+|.+.|++++|+..++++++.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV--------------YYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45567788888999999999999999999998887766 7888999999999999999999999887
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
.+. +...+..++.+|...|++++|+..|+++.+.+| + .+...+....+. ..+.... .......+.+......
T Consensus 68 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~~~ 142 (281)
T 2c2l_A 68 DGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKRWN-SIEERRIHQESELHSY 142 (281)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHHHH-HHHHTCCCCCCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHHHH-HHHHHHHhhhHHHHHH
Confidence 654 788888899999999999999999988877666 2 122222222211 1111111 1222223444444433
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 047659 219 ILKRLCINGQIGNASSLFDVLLLVGPKPN-VVTFSTLINAFCKE-AKLEKAFQLYNLMME 276 (619)
Q Consensus 219 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~ 276 (619)
+... ..|+.++|.+.++...+. .|+ ......+...+.+. +.++++.++|..+.+
T Consensus 143 l~~l--~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 143 LTRL--IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHH--HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHH--HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3222 246666776666666553 333 22222333333333 456667777766554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-08 Score=89.68 Aligned_cols=129 Identities=7% Similarity=-0.160 Sum_probs=103.4
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCccc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCD 114 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (619)
+......+...|++++|+..|+.+. ++++.++..++.++...|++++|...|++++..+|.... +
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~ 73 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV--------------A 73 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH--------------H
Confidence 3455666778899999999999887 557788888999999999999999999999988777665 7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCC---------------CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYL---------------SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+..++.+|...|++++|+..|+++.+..+.. ....+..++.++.+.|++++|.+.|+++.+..|
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8888899999999999999999988764431 126677777777788888888888877777766
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=89.33 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=65.8
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...+..++..+.+.|++++|...|++++..+|.++. .|..++.+|...|++++|+..|++++.
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR--------------FFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 444555566666666666666666666666666665555 566666666666666666666666666
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+|. ++..+..+..+|...|++++|+..|+++.+..|
T Consensus 84 l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 84 MDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5443 556666666666666666666666666655444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-08 Score=93.90 Aligned_cols=127 Identities=8% Similarity=-0.049 Sum_probs=71.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC---C--
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY---L-- 145 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-- 145 (619)
+.++...|++++|...|.+++...+..-+. .....+|..++..|.+.|++++|+..|++.++.... +
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSL--------FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 456677788888888888777653321110 000116677777788888888888888777543111 1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---------cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
-..++..+..+|.. |++++|+..|++.++..+ ..+..+..++...|++++|+..++++++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12355666666666 777777777766554321 1144444444445555555554444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-07 Score=84.97 Aligned_cols=175 Identities=6% Similarity=-0.044 Sum_probs=135.2
Q ss_pred HHHHHHHHccCCch-hHHHHHHHhhc--CCCCccHHHHHHHHHccCC----------hhHHHHHHHHHHHhcCCchhHHH
Q 047659 36 NAILANLIKTNNPT-PAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM----------RDVASHVFDKMVIQFGKTYNFFR 102 (619)
Q Consensus 36 ~~~~~~~~~~~~~~-~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~ 102 (619)
...+....+.|.+. +|+.+++.++. |.+..+|.....++...|. ++++...++.++..+|+++.
T Consensus 33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~--- 109 (331)
T 3dss_A 33 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--- 109 (331)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH---
Confidence 34444445566665 89999999997 7788888877777766554 68999999999999999887
Q ss_pred HHHhhcCCCcccHHHHHHHHHHcCC--hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHhhCCc-
Q 047659 103 LFRDSLGDFGCDYSFLIENYVRIGK--IDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS-VGQYYKLCRAMRGKGF- 178 (619)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~- 178 (619)
+|..-..++.+.|+ +++++.+++.+++.++. |..+|+....++...|. ++++++.+.++++.+|
T Consensus 110 -----------aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 110 -----------TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp -----------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred -----------HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 77777777777774 78999999999998776 99999998888888888 5899999999999988
Q ss_pred cc--hHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047659 179 CV--YEFLMNGLLRK--------------GVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN 226 (619)
Q Consensus 179 ~~--~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 226 (619)
+. |+.....+... +.++++++.+...+... +-|..+|+.+-..+.+.
T Consensus 178 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 178 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 33 66655555544 34677888888888775 67777787665555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=5.1e-09 Score=85.96 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+..+...+.+.|++++|+..|+.+.. |.++..|..++.++...|++++|...|++++..+|.++.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~----------- 105 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT----------- 105 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH-----------
Confidence 3566677788999999999999999998 889999999999999999999999999999999998877
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
+|..++.+|.+.|++++|+..|+++++..+
T Consensus 106 ---~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 106 ---PVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999998654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-08 Score=85.01 Aligned_cols=124 Identities=10% Similarity=0.043 Sum_probs=64.7
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++..+|....
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 82 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK------------ 82 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH------------
Confidence 344444445555556666665555554 445555555555555555555555555555555554443
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHH--HHHHHHhcCChhHHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQR--LMSCLVDSNSVGQYYKLCRA 172 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~ 172 (619)
++..++.++...|++++|...|+++.+..+. +...+.. .+..+.+.|++++|++.+..
T Consensus 83 --~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 83 --GYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4555555555555555555555555554332 3333322 22224445555555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=102.03 Aligned_cols=161 Identities=8% Similarity=-0.090 Sum_probs=123.3
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH-HHHhhcCCCcccHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR-LFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 121 (619)
.+++++|++.++.... +.....+..++..+.+.|++++|...|++++...|.....-. .-....+....+|..++.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777665 667788999999999999999999999999999887631000 0000000001188899999
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHH-
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENA- 197 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A- 197 (619)
|.+.|++++|+..|+++++..+. ++.++..+..+|...|++++|+..|+++++..| +. +..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987655 888999999999999999999999999988888 32 77788888888888877
Q ss_pred HHHHHHHHH
Q 047659 198 FHMHRQVIQ 206 (619)
Q Consensus 198 ~~~~~~~~~ 206 (619)
...+..|..
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-08 Score=80.42 Aligned_cols=119 Identities=4% Similarity=-0.015 Sum_probs=85.2
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
.+.++..+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++..+|....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------ 85 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK------ 85 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH------
Confidence 334555667777777778888888888887776 566677777788888888888888888888777666554
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN 161 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 161 (619)
++..++.++.+.|++++|+..|++..+..+. +...+..+..++...|
T Consensus 86 --------~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 86 --------GYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 6777777788888888888888877765443 4556666666665544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-08 Score=82.73 Aligned_cols=126 Identities=6% Similarity=-0.089 Sum_probs=91.7
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...|++++..+|.+.. ++..++..+...|++++|+..+++..+..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI--------------YYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 45566777888888888888888888887776655 6778888888888888888888888776543
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--h--HHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--Y--EFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~--~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
++..+..++.++...|++++|+..|+++.+..| +. + ...+..+...|++++|.+.+....
T Consensus 80 -~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 80 -YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 677788888888888888888888888777766 22 3 223333556677777776666543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-09 Score=101.65 Aligned_cols=191 Identities=7% Similarity=-0.063 Sum_probs=134.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+......+.+.|++++|+..|+.+.. |.+...+..++.++.+.|++++|...+++++..+|.+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------- 73 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK--------- 73 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---------
Confidence 455677788888999999999999999987 788899999999999999999999999999999888776
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc-hHHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV-YEFLMN 186 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~l~~ 186 (619)
++..++.+|...|++++|+..|+++.+.++. +...+...+....+. ..+...........+ +. ....+.
T Consensus 74 -----~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~ 144 (281)
T 2c2l_A 74 -----AHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLT 144 (281)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8899999999999999999999999875432 111111111111111 111222222222333 33 222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCcchHHHHHHHHHh
Q 047659 187 GLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN-GQIGNASSLFDVLLL 241 (619)
Q Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~ 241 (619)
.+ ..|+.++|++.++...+.. +.+......+...+.+. +.+++|.++|..+.+
T Consensus 145 ~l-~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 145 RL-IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HH-HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HH-HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 22 3689999999998888763 33344444444445554 668889999988765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=83.56 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=67.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...+..++..+.+.|++++|...|++++..+|.+.. .|..++.+|.+.|++++|+..|++++.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR--------------YFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344455566666666777777777777777766666555 566666667777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+|. ++..+..+..+|...|++++|+..|+++.+..|
T Consensus 81 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 81 MDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5544 556666666667777777777777666665554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=84.59 Aligned_cols=120 Identities=8% Similarity=0.096 Sum_probs=98.2
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
+...|++++|...+++++..+|.+.. ++..++..|...|++++|+..|+++.+..+. ++..+..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSE--------------QWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAAL 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 35678999999999999998887766 8889999999999999999999999887554 78888888
Q ss_pred HHH-HHhcCCh--hHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 154 MSC-LVDSNSV--GQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 154 ~~~-~~~~~~~--~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
+.+ +...|++ ++|+..++++.+.+| +. +..+..++...|++++|...++.+++..
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888 7788988 999999999988887 33 7778888888999999999998888874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-08 Score=78.78 Aligned_cols=97 Identities=8% Similarity=-0.106 Sum_probs=49.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
+..++..+.+.|++++|...|++++..+|.+.. +|..++.++.+.|++++|+..|+++++..|. +
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~ 84 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREE--------------AWRSLGLTQAENEKDGLAIIALNHARMLDPK-D 84 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 444455555555555555555555555554444 4455555555555555555555555554333 4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+..+..+..++...|++++|+..++++++.+|
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44555555555555555555555555544433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-08 Score=90.05 Aligned_cols=187 Identities=5% Similarity=-0.141 Sum_probs=117.4
Q ss_pred ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHH-------HHHHHHcCChhhHHHHHHHHHhCCCCC---
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFL-------IENYVRIGKIDESVEIFAYMSDMGIYL--- 145 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 145 (619)
+.++++.|.+.|.+++..+|...+ .|..+ ...+.+.++..+++..+++.+...+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~D--------------aw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACD--------------AWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhH--------------HHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 689999999999999999999988 77777 577777777888888887776632210
Q ss_pred --C---------------HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc-hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 146 --S---------------PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV-YEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 146 --~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
+ .......+..+...|++++|.++|+.+...+| ++ ...+...+.+.+++++|+..|+....
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 0 22344466667777777777777777766666 32 44444456666666666666664433
Q ss_pred CCCCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 207 RGFVPN--IVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN--VVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 207 ~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
.. .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 164 ~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 164 WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 21 111 22455555666666666666666666653211132 223444555556666666666666666654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-08 Score=79.00 Aligned_cols=114 Identities=9% Similarity=-0.003 Sum_probs=63.4
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++...|....
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------ 81 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK------------ 81 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH------------
Confidence 444444555556666666666665554 445555555666666666666666666666655554433
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS 162 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (619)
.+..++..+...|++++|...|+++.+..+. ++..+..+..++.+.|+
T Consensus 82 --~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 82 --AYGRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 4555555666666666666666665554332 44555555555554444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=84.06 Aligned_cols=109 Identities=11% Similarity=-0.021 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 047659 85 HVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG 164 (619)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (619)
..|++++..+|...+ .+..++..+.+.|++++|+..|+.++..++. ++..|..+..++...|+++
T Consensus 8 ~~~~~al~~~p~~~~--------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 8 GTIAMLNEISSDTLE--------------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp CSHHHHTTCCHHHHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHcCCHhhHH--------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHH
Confidence 345555555555444 7788899999999999999999999887655 8889999999999999999
Q ss_pred HHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 165 QYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 165 ~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
+|+..|++++..+| ++ +..+..++...|++++|.+.++.+++..
T Consensus 73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999998888 33 8888889999999999999999888763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-07 Score=82.39 Aligned_cols=126 Identities=6% Similarity=-0.132 Sum_probs=108.5
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
.+..++..+...|++++|+..|+++. .|++.++..++.++...|++++|+..|+++.+.+| +. +..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 46678888999999999999999883 55889999999999999999999999999998888 33 8889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNI----------------VTCNKILKRLCINGQIGNASSLFDVLLLVGP 244 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 244 (619)
.|++++|.+.++.+.+.. +.+. ..+..+..++...|++++|.+.|+......+
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999864 2222 6778888888899999999999999887543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.5e-08 Score=79.48 Aligned_cols=115 Identities=8% Similarity=-0.055 Sum_probs=75.4
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.+..++..++..+...|++++|...|++++..+|.+.. ++..++..+...|++++|+..++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK--------------LYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH--------------HHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH--------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455666777777777777777777777776665544 666777777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
..+. +...+..++.++.+.|++++|+..|+++.+..| +. +..+..++..
T Consensus 79 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 79 LEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred hCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 5443 566677777777777777777777777666655 22 4444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-08 Score=78.93 Aligned_cols=94 Identities=7% Similarity=-0.054 Sum_probs=51.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+......+.+.|++++|+..|+.+.. |.++..+..++.++.+.|++++|...+++++..+|....
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------------ 73 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR------------ 73 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH------------
Confidence 344444455555555555555555554 445555555555555555555555555555555554443
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
++..++.++...|++++|+..|+++++.
T Consensus 74 --~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 74 --AYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 4555555555555555555555555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-06 Score=79.37 Aligned_cols=187 Identities=9% Similarity=-0.000 Sum_probs=135.1
Q ss_pred HHccCChh-HHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCC----------hhhHHHHHHHHHhCC
Q 047659 74 LLQSDMRD-VASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGK----------IDESVEIFAYMSDMG 142 (619)
Q Consensus 74 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~ 142 (619)
..+.|.++ +|...++.++..+|.... +|+.-...+...|. +++++.+++.++..+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~yt--------------aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFAT--------------LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHH--------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHH--------------HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 34566666 899999999999998877 44443333333332 678999999999987
Q ss_pred CCCCHHhHHHHHHHHHhcCC--hhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhH
Q 047659 143 IYLSPDLVQRLMSCLVDSNS--VGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGV-IENAFHMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~ 216 (619)
|+ +..+|+.-..++...++ +++++++++++.+.+| +. |+.-.-++...|. ++++++.+..+++.. +.|..+|
T Consensus 105 PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW 182 (331)
T 3dss_A 105 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 182 (331)
T ss_dssp TT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred CC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 76 99999998888888874 8899999999999998 33 7777677777787 589999999999986 7788888
Q ss_pred HHHHHHHHhc--------------CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHH
Q 047659 217 NKILKRLCIN--------------GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKE-----------AKLEKAFQLY 271 (619)
Q Consensus 217 ~~ll~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~ 271 (619)
+.....+... +.++++++.++......|. |...|+-+-..+.+. +.++++++.+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 8877766654 3356677777777765443 666666544444433 2345555555
Q ss_pred HHHHhC
Q 047659 272 NLMMEM 277 (619)
Q Consensus 272 ~~m~~~ 277 (619)
+++.+.
T Consensus 262 ~elle~ 267 (331)
T 3dss_A 262 KELQEL 267 (331)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555553
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-08 Score=78.31 Aligned_cols=99 Identities=9% Similarity=-0.005 Sum_probs=83.1
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+...+..+.+.|++++|...|++++..+|.+.. +|..++.+|.+.|++++|+..|+++++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR--------------GYSNRAAALAKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 456777888888899999999999999888887766 788888889999999999999998888765
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 177 (619)
. ++..+..++.++...|++++|+..|+++.+.+
T Consensus 70 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 70 N-FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 5 67888888888888889888888888887765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-07 Score=89.57 Aligned_cols=193 Identities=9% Similarity=-0.026 Sum_probs=117.0
Q ss_pred ccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHc-cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQ-SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIE 120 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (619)
..|++++|.++++.+.. +.. +.+ .+++++|...|+++. .
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a~----------------------------~ 44 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKAA----------------------------V 44 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHHH----------------------------H
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHHH----------------------------H
Confidence 45667777777777665 221 111 466777766666553 3
Q ss_pred HHHHcCChhhHHHHHHHHHhCCCCC-C----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---------cchHHHHH
Q 047659 121 NYVRIGKIDESVEIFAYMSDMGIYL-S----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---------CVYEFLMN 186 (619)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~ 186 (619)
.|...|++++|...|+++.+..... + ..++..+..+|.+.|++++|+..|++.++... ..+..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667899999999998886542111 1 34677788888888999999888888654321 12556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC----CCC-hhhHHHHHH
Q 047659 187 GLLRKGVIENAFHMHRQVIQRGFVP-----NIVTCNKILKRLCINGQIGNASSLFDVLLLVGP----KPN-VVTFSTLIN 256 (619)
Q Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~----~~~-~~~~~~l~~ 256 (619)
+|.. |++++|++.+++.++..... ...++..+...|...|++++|...|++.....+ .+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 77777777777666541100 134455566666666666666666666554211 111 123444445
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047659 257 AFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~ 275 (619)
++...|++++|...|++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 5555566666666666665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-08 Score=86.66 Aligned_cols=158 Identities=9% Similarity=-0.126 Sum_probs=109.5
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
+...|++++|.+.++.+.. .....++..++.++...|++++|...+++++.......+ .+....++..++
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~l~ 73 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--------HTAEHRALHQVG 73 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC--------cHHHHHHHHHHH
Confidence 3568999999996655554 345677889999999999999999999999884221100 000111788999
Q ss_pred HHHHHcCChhhHHHHHHHHHhC---CC-CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cc------hHHH
Q 047659 120 ENYVRIGKIDESVEIFAYMSDM---GI-YL--SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CV------YEFL 184 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~---~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~------~~~l 184 (619)
..|...|++++|...+++..+. .. .+ ....+..+..++...|++++|...+++..+... +. +..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999999988764 11 11 234577888889999999999999888764321 11 4556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
..++...|++++|.+.+++..+.
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH
Confidence 66666777777777666665543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=4.1e-08 Score=78.73 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=70.0
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
+...+..++..+...|++++|...|++++...|.... ++..++..+...|++++|+..++...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV--------------YFCNRAAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH--------------HHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence 3445556666666677777777777777666555444 56666666667777777777777666654
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcC
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKG 192 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~ 192 (619)
+. ++..+..++.++...|++++|...++++.+..| +. +..+..++...|
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 77 PA-YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred cc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 33 456666666666666666666666666655554 21 444444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=97.38 Aligned_cols=150 Identities=11% Similarity=-0.041 Sum_probs=111.5
Q ss_pred ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC---------
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS--------- 146 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 146 (619)
..+++++|...++..+...|.... .+..++..|.+.|++++|+..|++++...+...
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~--------------~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 190 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQST--------------IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 456677788777777766655544 788999999999999999999999998765532
Q ss_pred -----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 147 -----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 147 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
..++..+..+|.+.|++++|+..|+++++.+| ++ +..+..++...|++++|...|+++++.. +.+...+..
T Consensus 191 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~ 269 (336)
T 1p5q_A 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQ 269 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 57778888888888888888888888877777 22 7777777777777777777777777764 455666667
Q ss_pred HHHHHHhcCCcchH-HHHHHHHH
Q 047659 219 ILKRLCINGQIGNA-SSLFDVLL 240 (619)
Q Consensus 219 ll~~~~~~~~~~~A-~~~~~~~~ 240 (619)
+..++...|+.++| ...+..|.
T Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 270 LAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666 33444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.8e-08 Score=75.97 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=57.3
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...+++++...|.... ++..++..+.+.|++++|...|+++.+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--------------AWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH--------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 34455555566666666666666666655554433 4555566666666666666666666554332
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++..+..++.++...|++++|...++++.+..|
T Consensus 76 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 76 -NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 455555666666666666666666666555555
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-07 Score=75.20 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=54.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..+...+...|++++|++.|+.+.. |.+...+..++.++...|++++|...+++++...|....
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------ 78 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------ 78 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH------------
Confidence 334444444555555555555555544 444445555555555555555555555555554444333
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
++..++..+...|++++|...|+++.+..+. ++..+..+..++
T Consensus 79 --~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 79 --AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 4455555555555555555555555544332 344444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-08 Score=88.90 Aligned_cols=162 Identities=6% Similarity=-0.111 Sum_probs=105.4
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHH-HHhhcC-CCcccHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRL-FRDSLG-DFGCDYSF 117 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 117 (619)
....|+++.|.+.++.... +.....+..++..+...|++++|...|++++...|..++.... +..... -...++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 4446777777777775443 4566778889999999999999999999999977765410000 000000 00027788
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCH
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVI 194 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~ 194 (619)
++.+|.+.|++++|+..++.+++..+. ++.++..++.+|...|++++|+..|+++.+..| +. +..+..++...++.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999887544 778888888888889999999988888887777 22 66666666655555
Q ss_pred HHHH-HHHHHH
Q 047659 195 ENAF-HMHRQV 204 (619)
Q Consensus 195 ~~A~-~~~~~~ 204 (619)
.++. ..+..+
T Consensus 173 ~~~~~~~~~~~ 183 (198)
T 2fbn_A 173 RKKDKLTFGGM 183 (198)
T ss_dssp HC---------
T ss_pred HHHHHHHHHHH
Confidence 5554 333333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-08 Score=80.43 Aligned_cols=97 Identities=11% Similarity=-0.031 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+......+.+.|++++|+..|+.+.. |.++..|..++.++.+.|++++|...|++++..+|.++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----------- 87 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR----------- 87 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-----------
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH-----------
Confidence 3556667778899999999999999987 888999999999999999999999999999999988777
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
.+..++.+|...|++++|+..|+.+++..+
T Consensus 88 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 88 ---FPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999987643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.3e-08 Score=76.15 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=89.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
....+...+.++|++++|++.|+.+.. |.++.++..++.++...|++++|+..+++++..+|........+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI------- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH-------
Confidence 345677788999999999999999998 88899999999999999999999999999999876543311111
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
..+|..++.++...|++++|++.|++.+.. .|++.....+
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 116788899999999999999999999874 4566654443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-07 Score=72.97 Aligned_cols=98 Identities=12% Similarity=-0.050 Sum_probs=53.0
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.+..++..+...|++++|...|++++..+|.+.. .+..++..+...|++++|...++++.+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 70 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV--------------LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD- 70 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-
Confidence 3444555555555555555555555555554433 4555555555555555555555555554332
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++..+..++.++...|++++|.+.+++..+.+|
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 455555555555555555555555555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=4e-08 Score=77.52 Aligned_cols=97 Identities=8% Similarity=-0.090 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
.........+.+.|++++|+..|+.+.. |.+..+|..++.++...|++++|+..|++++..+|....
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~----------- 86 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA----------- 86 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------
Confidence 3566777788899999999999999988 889999999999999999999999999999999998877
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
++..++.+|.+.|++++|+..|+++++..|
T Consensus 87 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 87 ---VHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 889999999999999999999999987644
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-07 Score=72.21 Aligned_cols=104 Identities=7% Similarity=-0.047 Sum_probs=82.7
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...+..++.++...|++++|...|++++..+|.... ++..++..+...|++++|+..|+++.+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK--------------YWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456677788888888888888888888888888776655 777888888888888888888888887
Q ss_pred CCCC-CCHHhHHHHHHHHHhc-CChhHHHHHHHHHhhCCc
Q 047659 141 MGIY-LSPDLVQRLMSCLVDS-NSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~-~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~ 178 (619)
..+. .+...+..+..++... |++++|++.++++....|
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 6432 1467788888888888 888888888888877665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-08 Score=87.23 Aligned_cols=150 Identities=10% Similarity=-0.042 Sum_probs=91.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC--
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS-- 146 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 146 (619)
..+......|.+++|.+.++......+.... .+..++..+.+.|++++|+..|++++...+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 74 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAF--------------DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW 74 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 3444455566777777666655544333332 677888899999999999999999988654411
Q ss_pred -------------HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047659 147 -------------PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFV 210 (619)
Q Consensus 147 -------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 210 (619)
...+..+..+|.+.|++++|+..++++++..| +. +..+..++...|++++|.+.++.+++.. +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 153 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-P 153 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-C
Confidence 26677777777777777777777777777666 22 6666677777777777777777776663 3
Q ss_pred CChhhHHHHHHHHHhcCCcchHH
Q 047659 211 PNIVTCNKILKRLCINGQIGNAS 233 (619)
Q Consensus 211 ~~~~~~~~ll~~~~~~~~~~~A~ 233 (619)
.+...+..+..++...++.+++.
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=79.20 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=75.7
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+..++..+.+.|++++|...|++++..+|.+.. +|..++.+|.+.|++++|+..|+++++..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 76 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI--------------YLSNRAAAYSASGQHEKAAEDAELATVVDP 76 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 445666777777888888888888888877776655 677777788888888888888888877654
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
. ++..|..+..+|...|++++|+..|+++++..|
T Consensus 77 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 77 K-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4 677777778888888888888888877777666
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-07 Score=74.25 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=80.0
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.++..++..+.+.|++++|+..|+++++.+|.... +|..++.+|.+.|++++|++.|+..++..+.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~--------------~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT--------------FYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 45678899999999999999999999999988776 8899999999999999999999999875433
Q ss_pred C--C----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 145 L--S----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 145 ~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
. + ..++..+..++...|++++|++.|++.++..+
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 1 1 13566667777777777777777777665444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.9e-07 Score=83.27 Aligned_cols=168 Identities=5% Similarity=-0.089 Sum_probs=104.9
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+...+..+...|++++|...+++.+...+....... . ...+..++..+...|++++|+..++.+++...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ-F-------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH-H-------HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH-H-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 344456677888899999999999988887654332100 0 00345577778888899999999988875432
Q ss_pred C---CC--HHhHHHHHHHHHhcCChhHHHHHHHHHhh---CCc-----c--chHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 144 Y---LS--PDLVQRLMSCLVDSNSVGQYYKLCRAMRG---KGF-----C--VYEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 144 ~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~-----~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
. +. ..+++.++..|...|++++|+..|+++.+ ..+ . ++..+..+|...|++++|...+++.++..
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2 11 34778888888888888888888888762 222 1 25556666666666666666666655431
Q ss_pred C----CC-ChhhHHHHHHHHHhcCCcchH-HHHHHHH
Q 047659 209 F----VP-NIVTCNKILKRLCINGQIGNA-SSLFDVL 239 (619)
Q Consensus 209 ~----~~-~~~~~~~ll~~~~~~~~~~~A-~~~~~~~ 239 (619)
. .. -..++..+...|...|++++| ...+++.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 0 00 133455555555555666555 4444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-07 Score=71.54 Aligned_cols=108 Identities=12% Similarity=-0.027 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+..+...+...|++++|+..|+.+.. |.++..+..++.++...|++++|...+++++..+|....
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------- 73 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK----------- 73 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH-----------
Confidence 3455556666667777777777776665 556666667777777777777777777777776665544
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMS 155 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 155 (619)
.+..++.++...|++++|...++...+.++. ++..+..+..
T Consensus 74 ---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 114 (118)
T 1elw_A 74 ---GYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQN 114 (118)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 5666677777777777777777777665443 4444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=76.33 Aligned_cols=103 Identities=9% Similarity=0.009 Sum_probs=68.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.++..+..++..+...|++++|...|++++..+|.... ++..++.++...|++++|+..++.+++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV--------------YYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344556666667777777777777777777776665544 666667777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.++. ++..+..+..++...|++++|+..|+++.+..|
T Consensus 72 ~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 72 LDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 5443 566666677777777777777776666655433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=6.7e-07 Score=83.35 Aligned_cols=164 Identities=7% Similarity=-0.096 Sum_probs=112.0
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc-CC-CCc------cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN-CV-SSP------NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
+...+..+...|++++|...++.+.. .+ .+. .+..++..+...|++++|...|++++...+...+..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~----- 152 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY----- 152 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-----
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-----
Confidence 34456777889999999999999886 22 222 122477777888899999999999998544322210
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC-----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM-----GIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-- 178 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 178 (619)
....+++.++..|...|++++|+..|+.+++. +..+ ...++..++.+|.+.|++++|+..+++..+..+
T Consensus 153 ---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 153 ---QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 00015888999999999999999999998741 1111 234678888888889999999888887664321
Q ss_pred -------cchHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 047659 179 -------CVYEFLMNGLLRKGV-IENAFHMHRQVIQ 206 (619)
Q Consensus 179 -------~~~~~l~~~~~~~~~-~~~A~~~~~~~~~ 206 (619)
..+..+..++...|+ +++|.+.+++++.
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 125566666666663 4666666665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-07 Score=71.81 Aligned_cols=102 Identities=10% Similarity=-0.029 Sum_probs=66.1
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...|++++..+|.+... ..++..++.++.+.|++++|+..|+.+.+..+.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT-----------PNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 345566667777777777777777777766654410 015666677777777777777777777665443
Q ss_pred CC---HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 145 LS---PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 145 ~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+ +.++..++.++...|++++|+..|+++.+..|
T Consensus 72 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 72 -HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp -STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred -CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 3 55566667777777777777777777666655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.2e-07 Score=72.65 Aligned_cols=104 Identities=13% Similarity=-0.007 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCC---ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCc---hhHHHHH
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSS---PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKT---YNFFRLF 104 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ 104 (619)
+.+......+...|++++|+..|+.+.. |.++ .++..++.++...|++++|...|++++..+|.+ ..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----- 77 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG----- 77 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH-----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH-----
Confidence 3455667778899999999999999887 6566 588999999999999999999999999998876 33
Q ss_pred HhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHH
Q 047659 105 RDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQ 151 (619)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 151 (619)
++..++.++.+.|++++|...|+.+.+..|. ++....
T Consensus 78 ---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 114 (129)
T 2xev_A 78 ---------GLLKLGLSQYGEGKNTEAQQTLQQVATQYPG-SDAARV 114 (129)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-SHHHHH
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ChHHHH
Confidence 7889999999999999999999999987544 444433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.2e-07 Score=82.74 Aligned_cols=165 Identities=8% Similarity=-0.084 Sum_probs=124.2
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCC------ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSS------PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
.+...+..+...|++++|++.++.... +... ..+..++..+...|++++|...+++++...+...+..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---- 152 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY---- 152 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH----
Confidence 344567777899999999999998776 2222 1234577778899999999999999987544321100
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH---hCCCC-C--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS---DMGIY-L--SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF- 178 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 178 (619)
....+++.++..|...|++++|+..|++++ +..+. + ...++..++.+|.+.|++++|+..+++..+...
T Consensus 153 ----~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 153 ----QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 001178899999999999999999999997 32221 1 125888999999999999999999998765422
Q ss_pred --------cchHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 047659 179 --------CVYEFLMNGLLRKGVIENA-FHMHRQVIQ 206 (619)
Q Consensus 179 --------~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 206 (619)
..+..+..++...|++++| ...++....
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1278889999999999999 777777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-07 Score=79.11 Aligned_cols=100 Identities=8% Similarity=-0.023 Sum_probs=91.4
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+..+...+.+.|++++|+..|+.+.. |.+...+..++.++.+.|++++|+..|++++..+|....
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------- 80 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK--------- 80 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------
Confidence 455677888888999999999999999998 888899999999999999999999999999999988776
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
+|..++.+|...|++++|+..|++.++..+.
T Consensus 81 -----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 81 -----AWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred -----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 8899999999999999999999999886554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5e-08 Score=97.07 Aligned_cols=160 Identities=8% Similarity=-0.063 Sum_probs=119.7
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH-hhcCCCcccHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR-DSLGDFGCDYSFLIEN 121 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 121 (619)
.+++++|++.|+.... +.....+..++..+.+.|++++|...|++++...|.......... ...+....+|..++.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777766554 566778899999999999999999999999998887631000000 0000001178899999
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~ 198 (619)
|.+.|++++|+..|+++++..+. ++.++..+..+|...|++++|+..|+++++..| + .+..+..++...++.+++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987655 788999999999999999999999999999888 2 2888888888888877665
Q ss_pred H-HHHHHH
Q 047659 199 H-MHRQVI 205 (619)
Q Consensus 199 ~-~~~~~~ 205 (619)
+ .+..|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 3 344443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=75.80 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=91.5
Q ss_pred cCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 29 DLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
+.++..+..+...+...|++++|+..|+.+.. |.++..+..++.++...|++++|...+++++..+|....
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~------- 78 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK------- 78 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH-------
Confidence 34677888899999999999999999999887 888899999999999999999999999999999888766
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..++.+|...|++++|+..|+.+++..
T Consensus 79 -------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 79 -------AHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 88999999999999999999999998754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=81.67 Aligned_cols=162 Identities=6% Similarity=-0.085 Sum_probs=100.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CC--
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LS-- 146 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-- 146 (619)
.+..+...|++++|...++++....+..++.. .+. ..+..++..+...|++++|+..|+.+++.... ++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~-~~~-------~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-QFL-------QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH-HHH-------HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHH-HHH-------HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 46677889999999999999988655544310 000 03445777777888999999999999874322 22
Q ss_pred --HHhHHHHHHHHHhcCChhHHHHHHHHHhhC------Cc----cchHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC
Q 047659 147 --PDLVQRLMSCLVDSNSVGQYYKLCRAMRGK------GF----CVYEFLMNGLLRKGVIENAFHMHRQVIQRG----FV 210 (619)
Q Consensus 147 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~ 210 (619)
..+++.++.+|...|++++|+..|+++.+. .. .++..+..+|...|++++|...+++.++.. ..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 236788888888888888888888887631 11 125555666666666666666655554431 01
Q ss_pred CC-hhhHHHHHHHHHhcCC-cchHHHHHHHH
Q 047659 211 PN-IVTCNKILKRLCINGQ-IGNASSLFDVL 239 (619)
Q Consensus 211 ~~-~~~~~~ll~~~~~~~~-~~~A~~~~~~~ 239 (619)
+. ..++..+..++.+.|+ +++|.+.+++.
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 3344445555555553 25555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=7e-07 Score=73.27 Aligned_cols=111 Identities=12% Similarity=0.036 Sum_probs=71.8
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
+...+......+...|++++|++.|+.+.. |.+ ...+..++.++...|++++|...+++++..+|....
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK------ 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH------
Confidence 444556666666777777777777777665 322 566666777777777777777777777776665544
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC 156 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (619)
.+..++.+|...|++++|...|++..+..+. +...+..+..+
T Consensus 101 --------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 101 --------ALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 5666777777777777777777777665433 45555444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-07 Score=71.72 Aligned_cols=100 Identities=12% Similarity=-0.055 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCC--chhHHHHHHh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK--TYNFFRLFRD 106 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~ 106 (619)
++..+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++...|. ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------- 77 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD------- 77 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH-------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH-------
Confidence 344556677778899999999999999887 778889999999999999999999999999998887 655
Q ss_pred hcCCCcccHHHHHHHHHHc-CChhhHHHHHHHHHhCCCC
Q 047659 107 SLGDFGCDYSFLIENYVRI-GKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 144 (619)
++..++.++.+. |++++|++.++.+....+.
T Consensus 78 -------~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 78 -------VWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp -------HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred -------HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 889999999999 9999999999999987654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.3e-07 Score=77.82 Aligned_cols=152 Identities=9% Similarity=-0.093 Sum_probs=84.6
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh------CCc---cchHHHHHHHHhcCC
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRG------KGF---CVYEFLMNGLLRKGV 193 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~---~~~~~l~~~~~~~~~ 193 (619)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++... ..+ ..+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457889999986655544 2334567788888888899999999988888765 111 115566666666677
Q ss_pred HHHHHHHHHHHHHC----CCC--CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC---CCC--hhhHHHHHHHHHhcC
Q 047659 194 IENAFHMHRQVIQR----GFV--PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP---KPN--VVTFSTLINAFCKEA 262 (619)
Q Consensus 194 ~~~A~~~~~~~~~~----~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~ 262 (619)
+++|.+.+++..+. +.. .....+..+...+...|++++|...+++...... .+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 76666666665543 100 1123344555555556666666666555442100 000 122344444555555
Q ss_pred CHHHHHHHHHHHH
Q 047659 263 KLEKAFQLYNLMM 275 (619)
Q Consensus 263 ~~~~a~~~~~~m~ 275 (619)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.2e-07 Score=73.19 Aligned_cols=106 Identities=7% Similarity=-0.131 Sum_probs=88.2
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.+...+..++..+...|++++|...|++++...|.+... ..++..++..|...|++++|+..++...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQ-----------AVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHH-----------HHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 4566777888999999999999999999999887765110 01788889999999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..+. ++..+..+..++...|++++|...|+++.+..|
T Consensus 94 ~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 94 KDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred hCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7544 688888899999999999999999999888776
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=74.13 Aligned_cols=100 Identities=10% Similarity=0.001 Sum_probs=66.9
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...|++++..+|.... ++..++..|...|++++|...++++....+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT--------------YITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH--------------HHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 45566777777777777777777777777665544 6677777777777777777777777664332
Q ss_pred --CC----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 145 --LS----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 145 --~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++ ..++..++.++...|++++|.+.|+++.+..+
T Consensus 71 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 11 55566666666666776666666666655544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-06 Score=87.00 Aligned_cols=178 Identities=6% Similarity=-0.059 Sum_probs=148.1
Q ss_pred HHHHHHccC-CchhHHHHHHHhhc--CCCCccHHHHHHHHHccCC----------hhHHHHHHHHHHHhcCCchhHHHHH
Q 047659 38 ILANLIKTN-NPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM----------RDVASHVFDKMVIQFGKTYNFFRLF 104 (619)
Q Consensus 38 ~~~~~~~~~-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (619)
.+....+.| ..++|++.++.+.. |.+..+|.....++...|+ +++|.+.+++++..+|+++.
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~----- 108 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG----- 108 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH-----
Confidence 333444445 45688999999998 8888999999999888888 99999999999999999888
Q ss_pred HhhcCCCcccHHHHHHHHHHcC--ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCc-cc
Q 047659 105 RDSLGDFGCDYSFLIENYVRIG--KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN-SVGQYYKLCRAMRGKGF-CV 180 (619)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~-~~ 180 (619)
+|..-..++.+.| +++++++.++++++.++. +..+|+....++.+.| .++++++.+.++++.+| +.
T Consensus 109 ---------aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~ 178 (567)
T 1dce_A 109 ---------TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (567)
T ss_dssp ---------HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred ---------HHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence 7788888888889 669999999999998776 9999999999999989 89999999999999999 33
Q ss_pred --hHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch
Q 047659 181 --YEFLMNGLLRK--------------GVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 181 --~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 231 (619)
|......+... +.++++++.+..++... +-+..+|+.+-..+.+.++.++
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 66666666553 55788999999988876 6778889888888877776544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.9e-07 Score=72.29 Aligned_cols=117 Identities=9% Similarity=0.140 Sum_probs=93.3
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
++.+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++...|.......
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------- 76 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR------- 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH-------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH-------
Confidence 34566777788899999999999999887 778888999999999999999999999999998665411000
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
....++..++.++...|++++|...|+.+.+.. |++..+..+..+.
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 001278899999999999999999999999864 4666666655554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-07 Score=92.62 Aligned_cols=117 Identities=6% Similarity=-0.094 Sum_probs=59.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV 150 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 150 (619)
+..+.+.|++++|...|+++++.+|.... ++..++.+|.+.|++++|+..++++++..+. ++.++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~ 77 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAI--------------YYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGY 77 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 33444555555555555555555554443 5555555555555555555555555555433 45555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHH--HHhcCCHHHHHHHHH
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNG--LLRKGVIENAFHMHR 202 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~--~~~~~~~~~A~~~~~ 202 (619)
..++.+|.+.|++++|++.|+++.+..| +. +..+..+ +...|++++|++.++
T Consensus 78 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 78 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555555555555555555555544 11 3333333 444555555555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-07 Score=94.91 Aligned_cols=116 Identities=11% Similarity=0.099 Sum_probs=98.8
Q ss_pred HHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHH
Q 047659 41 NLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFL 118 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (619)
.+.+.|++++|++.|+.+.. |.+..++..++.++.+.|++++|...++++++.+|.... ++..+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--------------~~~~l 80 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK--------------GYYRR 80 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH--------------HHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH--------------HHHHH
Confidence 35679999999999999988 888899999999999999999999999999999888766 88999
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC--LVDSNSVGQYYKLCR 171 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 171 (619)
+.+|.+.|++++|++.|+++++..+. +...+..+..+ +.+.|++++|++.++
T Consensus 81 g~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999987654 45566666666 888999999999998
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-07 Score=72.60 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=50.1
Q ss_pred cCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
.|++++|+..|+.+.. |.+..++..++.++...|++++|...|++++..+|.+.. ++..++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~l~ 68 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA--------------LRVFYA 68 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH--------------HHHHHH
Confidence 4566666666666654 223345566666666666666666666666666665554 556666
Q ss_pred HHHHHcCChhhHHHHHHHHHhCC
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
.++.+.|++++|+..|++.+...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666666666543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.6e-07 Score=73.86 Aligned_cols=109 Identities=9% Similarity=0.003 Sum_probs=81.6
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhc--------CCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHH
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQF--------GKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFA 136 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 136 (619)
..+...+..+.+.|++++|...|++++... |...+. ...-|....+|..++.+|.+.|++++|+..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW----VELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH----HHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH----HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 456677888889999999999999988861 211110 00011112278888889999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 137 YMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+++.++. ++.++..++.+|...|++++|+..|+++++.+|
T Consensus 88 ~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 88 EVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 99887654 788888888889889999999888888887776
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.4e-07 Score=71.70 Aligned_cols=88 Identities=11% Similarity=-0.012 Sum_probs=65.3
Q ss_pred ccCChhHHHHHHHHHHHh---cCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 047659 76 QSDMRDVASHVFDKMVIQ---FGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQR 152 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 152 (619)
..|++++|+..|++++.. +|.... ++..++.+|.+.|++++|+..|+++++..|. ++.++..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~--------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAE--------------CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 467888888888888876 344333 7788888888888888888888888887655 6778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++.++...|++++|+..+++.+...|
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888777655
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=70.44 Aligned_cols=111 Identities=11% Similarity=-0.147 Sum_probs=85.3
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC---
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM--- 141 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 141 (619)
..+...+..+...|++++|...|++++..+|..++.- .+ ...|.....|..++.++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-a~-~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-AF-DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-CC-CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-hh-hhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3456677888889999999999999999888732200 00 000001118899999999999999999999999986
Q ss_pred ----CCCCCHHhH----HHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 142 ----GIYLSPDLV----QRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 142 ----~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+|. +...| .....++...|++++|+..|++.++..|
T Consensus 90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 90 RGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 554 66788 8999999999999999999999887766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-06 Score=85.99 Aligned_cols=125 Identities=9% Similarity=-0.013 Sum_probs=106.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCC---------------CccHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVS---------------SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
.+......+.+.|++++|+..|+.+.. |.+ ..++..++.++.+.|++++|+..+++++..+|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 566677788899999999999999988 555 478899999999999999999999999999988
Q ss_pred chhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHH-HHHHH
Q 047659 97 TYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYK-LCRAM 173 (619)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~ 173 (619)
+.. +|..++.+|...|++++|+..|+++++..+. +..++..+..++.+.++++++.. .+..|
T Consensus 350 ~~~--------------a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 350 NEK--------------GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp CHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 8899999999999999999999999997654 67788889999988888887764 44444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-06 Score=82.34 Aligned_cols=133 Identities=5% Similarity=-0.120 Sum_probs=94.0
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH--HHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF--FRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
..+..++..+.+.|++++|...|++++...+..... ........|....+|..++.+|.+.|++++|+..++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346788899999999999999999999832221000 000000011112278888999999999999999999998876
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHH
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~ 198 (619)
+. ++.++..+..+|...|++++|+..|+++.+..| +. +..+..++...++.+++.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 788888888999999999999999988888777 22 555566665555555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-06 Score=68.77 Aligned_cols=96 Identities=15% Similarity=-0.026 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CC-------CCc-----cHHHHHHHHHccCChhHHHHHHHHHHHh-----
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CV-------SSP-----NIAQLIHVLLQSDMRDVASHVFDKMVIQ----- 93 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 93 (619)
+.+......+.+.|++++|+..|+.++. |. +.. .|..++.++...|++++|+..+++++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4567777888899999999999999998 54 222 8999999999999999999999999999
Q ss_pred --cCCchhHHHHHHhhcCCCcccH----HHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 94 --FGKTYNFFRLFRDSLGDFGCDY----SFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 94 --~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
+|+... +| ...+.++...|++++|+..|++.++..
T Consensus 92 e~~pd~~~--------------A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 92 ELNQDEGK--------------LWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CTTSTHHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCCchHH--------------HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 887666 77 999999999999999999999998753
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.6e-07 Score=84.59 Aligned_cols=137 Identities=8% Similarity=0.015 Sum_probs=77.2
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh---------HHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHH
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN---------FFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEI 134 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 134 (619)
...+..++..+.+.|++++|...|++++...|.... ....+.. .+|..++.+|.+.|++++|+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~------~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKN------PCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHT------HHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHH------HHHHHHHHHHHHcCCHHHHHHH
Confidence 344566667777777777777777777776665431 0011111 1678888889999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 047659 135 FAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNG-LLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~-~~~~~~~~~A~~~~~~~~~~ 207 (619)
|+++++..+. +..++..+..+|...|++++|+..|+++++..| +. +..+..+ ....+..+.+...+..+...
T Consensus 253 ~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 253 CNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9998887554 788888899999999999999999999888877 22 5555544 33456677788888888765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.7e-06 Score=81.48 Aligned_cols=166 Identities=7% Similarity=-0.069 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCc-----------------cHHHHHHHHHccCChhHHHHHHHHHHH
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSP-----------------NIAQLIHVLLQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (619)
|.....-...+.+.|++++|++.|..+.. +.... ++..++.+|...|++++|.+.+.++..
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445566778889999999999998886 22221 266788899999999999999988877
Q ss_pred hcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhHHH
Q 047659 93 QFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM----GIYL-SPDLVQRLMSCLVDSNSVGQYY 167 (619)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~ 167 (619)
..+...... .. ..+...+...+...|+++.|..+++..... +..+ -..++..++..|...|++++|.
T Consensus 84 ~~~~~~~~~---~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 84 YMMQFAKSK---TV-----KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp HHHTSCHHH---HH-----HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHccchH---HH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence 544322210 00 003444555555678888888888777532 1122 2345667777888888888888
Q ss_pred HHHHHHhhCC------c---cchHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 168 KLCRAMRGKG------F---CVYEFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 168 ~~~~~~~~~~------~---~~~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
.++..+...- + +.+..+++.|...|++++|...++...
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 7777654321 0 115555555555555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.5e-06 Score=80.75 Aligned_cols=177 Identities=8% Similarity=-0.031 Sum_probs=103.9
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHH---HhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLF---RDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...-++.+...|++++|.+.|.++++..+...+..... ....+....++..++..|...|++++|.+.+..+.+
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455667888899999999999999999877654421000 000000111477889999999999999999988765
Q ss_pred CCCCCC-H----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---------cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 141 MGIYLS-P----DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 141 ~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
.....+ . .+.+.+...+...|+++.|..++........ ..+..++..+...|++++|..++..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 322211 1 1223344444566788888888777653211 1145556666666666666666665544
Q ss_pred CCC-----CCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 207 RGF-----VPNIVTCNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 207 ~~~-----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
.-. +....++..++..|...|++++|...+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 310 1112344455555555555555555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-06 Score=82.22 Aligned_cols=95 Identities=6% Similarity=-0.008 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-H
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR-L 223 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~ 223 (619)
.++..+..+|.+.|++++|+..|+++++.+| +. +..+..++...|++++|...|+.+++.. +.+...+..+... .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 3788899999999999999999999999888 33 8999999999999999999999998774 3455566666555 3
Q ss_pred HhcCCcchHHHHHHHHHhCC
Q 047659 224 CINGQIGNASSLFDVLLLVG 243 (619)
Q Consensus 224 ~~~~~~~~A~~~~~~~~~~~ 243 (619)
...+..+.+...|..+....
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 34567788889999887653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=71.69 Aligned_cols=108 Identities=10% Similarity=0.005 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--------------------CCCCccHHHHHHHHHccCChhHHHHHHHHHH
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--------------------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMV 91 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 91 (619)
.+.+......+.+.|++++|+..|+.+.. +.....+..++.++.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34667788888999999999999998775 1123577889999999999999999999999
Q ss_pred HhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH-HhHHHHH
Q 047659 92 IQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP-DLVQRLM 154 (619)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 154 (619)
..+|.+.. +|..++.+|...|++++|+..|+..+...|. ++ .....+.
T Consensus 91 ~~~p~~~~--------------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~ 139 (162)
T 3rkv_A 91 KREETNEK--------------ALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMK 139 (162)
T ss_dssp HHSTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHH
T ss_pred hcCCcchH--------------HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 99988777 8899999999999999999999999987554 44 3333333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-05 Score=81.14 Aligned_cols=170 Identities=6% Similarity=-0.007 Sum_probs=136.4
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCC----------hhhHHHHHHHHHhCCCCCC
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGK----------IDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~ 146 (619)
....++|...+++++..+|+... +|+.-..++...|+ +++++++++.+++.+++ +
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~t--------------aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~ 106 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFAT--------------LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-S 106 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred CCCCHHHHHHHHHHHHHCchhHH--------------HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-C
Confidence 34456889999999999999887 67777777777777 89999999999998877 9
Q ss_pred HHhHHHHHHHHHhcC--ChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 147 PDLVQRLMSCLVDSN--SVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKG-VIENAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
..+|+.-..++.+.+ +++++++.++++.+.++ +. |....-.+...| .++++++.+..+++.. +.|..+|+...
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~ 185 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRS 185 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHH
Confidence 999999999999999 66999999999999998 33 777777777888 8999999999999886 77888898887
Q ss_pred HHHHhc--------------CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047659 221 KRLCIN--------------GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK 263 (619)
Q Consensus 221 ~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (619)
.++.+. +.++++.+.+++.....+. |...|+.+-..+.+.+.
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 777663 3456777777777765443 56667766666666555
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-06 Score=81.55 Aligned_cols=120 Identities=9% Similarity=-0.014 Sum_probs=102.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc------------------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN------------------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
.+..+...+.+.|++++|+..|+.+.. +.....+..++.++.+.|++++|+..+++++..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 356667778889999999999998874 34457788999999999999999999999999988
Q ss_pred CchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047659 96 KTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYK 168 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 168 (619)
.+.. ++..++.+|...|++++|+..|+++++..+. +...+..+..++...++.+++.+
T Consensus 305 ~~~~--------------a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTK--------------ALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 8899999999999999999999999987655 78888888888887777776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.7e-06 Score=68.40 Aligned_cols=133 Identities=11% Similarity=-0.026 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.++..++..+...|++++|...+++++...+...+.. ....++..++..+...|++++|...++...+....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888877543221100 00116777888888888888888888887653211
Q ss_pred -CC----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---------cchHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 145 -LS----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 145 -~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
++ ...+..+..++...|++++|.+.+++..+... ..+..+...+...|++++|.+.+++..
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 11 34566677777778888888877777653211 014444445555555555555555444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.1e-07 Score=68.65 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=70.0
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+..++..+...|++++|...|++++..+|.+.. ++..++.++.+.|++++|+..|+++++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV--------------GYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 456677888888888888888888888888777665 778888888888888888888888887654
Q ss_pred CCC------HHhHHHHHHHHHhcCChhHHHHHHHH
Q 047659 144 YLS------PDLVQRLMSCLVDSNSVGQYYKLCRA 172 (619)
Q Consensus 144 ~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 172 (619)
. + ...+..+..++...|+++.|+..+++
T Consensus 70 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 70 T-AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp S-TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred C-ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 4 3 55566666666666666665554433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=7e-06 Score=68.28 Aligned_cols=134 Identities=7% Similarity=-0.082 Sum_probs=102.5
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCC------ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSS------PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
.+..+...+...|++++|+..++.+.. +... .++..++.++...|++++|...+++++...+...+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----- 85 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----- 85 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-----
Confidence 456667777889999999999999887 2211 367789999999999999999999998754332110
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC----C-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI----Y-LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
+....++..++..+...|++++|...+++..+... . ....++..+..++...|++++|.+.+++..+
T Consensus 86 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 86 ---AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00011788899999999999999999999875311 1 1235677888999999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.9e-06 Score=65.31 Aligned_cols=79 Identities=6% Similarity=-0.131 Sum_probs=59.4
Q ss_pred hhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC
Q 047659 49 TPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG 126 (619)
Q Consensus 49 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 126 (619)
..|+..|+.+.. |.++..+..++.++...|++++|...|++++..+|.... +|..++.+|...|
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~g 67 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV--------------AWKWLGKTLQGQG 67 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHHcC
Confidence 356677777665 666777778888888888888888888888877776655 6777778888888
Q ss_pred ChhhHHHHHHHHHhC
Q 047659 127 KIDESVEIFAYMSDM 141 (619)
Q Consensus 127 ~~~~A~~~~~~~~~~ 141 (619)
++++|...|++..+.
T Consensus 68 ~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 68 DRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888877654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-06 Score=69.28 Aligned_cols=88 Identities=15% Similarity=0.036 Sum_probs=76.0
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCCh----------hHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMR----------DVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
..+.+.+++|++.++.+.. |.++++|..++.++...|++ ++|+..|+++++.+|+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~---------- 81 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------- 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH----------
Confidence 3445678899999999887 99999999999999988876 4999999999999999887
Q ss_pred CCcccHHHHHHHHHHcC-----------ChhhHHHHHHHHHhCCC
Q 047659 110 DFGCDYSFLIENYVRIG-----------KIDESVEIFAYMSDMGI 143 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~ 143 (619)
+|..++.+|...| ++++|++.|+++++.+|
T Consensus 82 ----A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 82 ----AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 8899999999875 78888888888888544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.14 E-value=9.3e-06 Score=59.78 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=55.6
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+..++..+...|++++|...|++++...|.... ++..++.++.+.|++++|+..|++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--------------AWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 345666777777777777777777777777666554 666777777777777777777777776544
Q ss_pred CCCHHhHHHHHHHHHh
Q 047659 144 YLSPDLVQRLMSCLVD 159 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~ 159 (619)
. ++..+..+..++.+
T Consensus 75 ~-~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 75 N-NAEAKQNLGNAKQK 89 (91)
T ss_dssp T-CHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHh
Confidence 3 56666666666544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=5.9e-06 Score=66.63 Aligned_cols=90 Identities=3% Similarity=-0.107 Sum_probs=77.0
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCCh----------hhHHHHHHHHHhCCCC
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKI----------DESVEIFAYMSDMGIY 144 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~ 144 (619)
.+.+.+++|.+.+++++..+|...+ .|..++.++...|++ ++|+..|++.++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~ae--------------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~ 78 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDAD--------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence 4567899999999999999999888 788888899988775 4999999999998766
Q ss_pred CCHHhHHHHHHHHHhcC-----------ChhHHHHHHHHHhhCCcc
Q 047659 145 LSPDLVQRLMSCLVDSN-----------SVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~ 179 (619)
+..+|..+..+|...| ++++|++.|+++++.+|+
T Consensus 79 -~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 79 -KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred -cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 7889999999998764 788888888888888873
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=62.60 Aligned_cols=83 Identities=10% Similarity=-0.048 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 047659 81 DVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDS 160 (619)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (619)
++|...|++++..+|.+.. .+..++..|...|++++|+..|+++++..+. +...|..+..+|...
T Consensus 2 ~~a~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNML--------------LRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHc
Confidence 4678888888888777665 7888999999999999999999999887654 678888899999999
Q ss_pred CChhHHHHHHHHHhhCCc
Q 047659 161 NSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 161 ~~~~~A~~~~~~~~~~~~ 178 (619)
|++++|+..|+++.+..|
T Consensus 67 g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999988876544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.08 E-value=9.1e-06 Score=61.21 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=60.3
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.++.++..++.++...|++++|+..|+++++.+|.... +|..++.+|...|++++|+..|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG--------------TYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777888888888888888888888888888777665 778888888888888888888888765
Q ss_pred CCCC-CCHHhHHHHHHHHH
Q 047659 141 MGIY-LSPDLVQRLMSCLV 158 (619)
Q Consensus 141 ~~~~-~~~~~~~~l~~~~~ 158 (619)
..+. ++......+...+.
T Consensus 70 l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 70 VAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHSCHHHHHHHHHHHH
T ss_pred hhhcCCchhHHHHHHHHHH
Confidence 4221 24444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=6.4e-05 Score=60.43 Aligned_cols=110 Identities=14% Similarity=0.015 Sum_probs=64.1
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH--
Q 047659 47 NPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR-- 124 (619)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 124 (619)
++++|++.|+.+.+..++.+. ++.++...+..++|...|+++.+.+ ++. ++..|...|..
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~--------------a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN--SGN--------------GCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT--CHH--------------HHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC--CHH--------------HHHHHHHHHHcCC
Confidence 455666666666554444444 6666666666666666666666541 112 55566666666
Q ss_pred --cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCC
Q 047659 125 --IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 125 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 177 (619)
.+++++|...|++..+.+ ++.++..+...|.. .+++++|+.+|++..+.+
T Consensus 72 g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 566666666666666543 45566666666655 556666666666655544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=4e-06 Score=64.61 Aligned_cols=99 Identities=9% Similarity=-0.053 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
++.+..+...+...|++++|++.|+.+.. |.++..+..++.++...|++++|...+++++..+|.+.+... +
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~----- 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI-R----- 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH-H-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH-H-----
Confidence 45667778888999999999999999988 888899999999999999999999999999998887611000 0
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYM 138 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 138 (619)
..++..++.++...|+++.|+..++++
T Consensus 78 --~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 --SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp --HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred --HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 116778888888888888887776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.9e-05 Score=75.94 Aligned_cols=124 Identities=14% Similarity=0.005 Sum_probs=92.4
Q ss_pred HHHccCCchhHHHHHHHhhc-------CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHh-----cCCchhHHHHHH
Q 047659 41 NLIKTNNPTPAIQFFKWTHN-------CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQ-----FGKTYNFFRLFR 105 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~ 105 (619)
.+..+|++++|+.+++.++. +.+ ..++..++.+|..+|++++|..++++++.. +++.++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~------ 391 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ------ 391 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH------
Confidence 45679999999999998876 333 355678999999999999999999999875 222222
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh-----CCCC-CCH-HhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD-----MGIY-LSP-DLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
...+++.|+..|..+|++++|+.+++++++ .|+. |+. .+...+..++...+.+++|..+|.++.+
T Consensus 392 -----~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 392 -----LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222899999999999999999999998864 2433 122 2345566667777778888887777654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.92 E-value=3.6e-05 Score=56.50 Aligned_cols=81 Identities=11% Similarity=0.002 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
+..+..+...+...|++++|+..|+.+.. |.+...+..++.++.+.|++++|...+++++..+|....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---------- 78 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------- 78 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH----------
Confidence 44566777788899999999999999987 778889999999999999999999999999999887766
Q ss_pred CCcccHHHHHHHHHHcC
Q 047659 110 DFGCDYSFLIENYVRIG 126 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g 126 (619)
++..+..++.+.|
T Consensus 79 ----~~~~l~~~~~~~g 91 (91)
T 1na3_A 79 ----AKQNLGNAKQKQG 91 (91)
T ss_dssp ----HHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHhcC
Confidence 6667777666543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00014 Score=72.01 Aligned_cols=97 Identities=8% Similarity=-0.126 Sum_probs=71.2
Q ss_pred HHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC-----CCC-C
Q 047659 72 HVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM-----GIY-L 145 (619)
Q Consensus 72 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~ 145 (619)
..+..+|++++|+.++++++........ ..-|....+++.|+.+|..+|++++|..+++++++. |+. |
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg------~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFA------DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBC------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3456899999999999999886332110 000111128899999999999999999999988642 332 2
Q ss_pred C-HHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 146 S-PDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 146 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+ ..+++.++.+|..+|++++|..+++++.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 2357889999999999999999888764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0002 Score=57.43 Aligned_cols=109 Identities=8% Similarity=-0.109 Sum_probs=70.9
Q ss_pred ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 047659 79 MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV 158 (619)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (619)
++++|...|+++.+.+.. . +. |...|...+.+++|.+.|++..+.+ ++.++..+...|.
T Consensus 10 d~~~A~~~~~~aa~~g~~--~--------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM--F--------------GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT--T--------------HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH--h--------------hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 566777777777664321 1 33 6666666667777777777777653 5667777777776
Q ss_pred h----cCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047659 159 D----SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 159 ~----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 208 (619)
. .+++++|+++|++..+.+. +.+..+...|.. .+++++|.++++...+.|
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6 6677777777777666654 346666666666 666777777777666665
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00017 Score=52.87 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=55.1
Q ss_pred CCCCccHHHHHHHHHccCC---hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDM---RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAY 137 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 137 (619)
|.++..+..++.++...++ .++|...+++++..+|++.. +...++..+.+.|++++|+..|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r--------------A~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA--------------ALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5667777788887765544 68888888888888888777 677888888888888888888888
Q ss_pred HHhCCCC
Q 047659 138 MSDMGIY 144 (619)
Q Consensus 138 ~~~~~~~ 144 (619)
+++..+.
T Consensus 69 ~l~~~p~ 75 (93)
T 3bee_A 69 LLDSNDP 75 (93)
T ss_dssp HHTCCCT
T ss_pred HHhhCCC
Confidence 8876544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=54.68 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=59.7
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
++.....+...+.+.|++++|+..|+.+.. |.++.+|..++.++...|++++|...|++++...+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 566777888889999999999999999988 888999999999999999999999999999986543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0016 Score=60.49 Aligned_cols=133 Identities=9% Similarity=-0.070 Sum_probs=72.3
Q ss_pred CCCCccHHHHH--HHHHccC---ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH---cC-Ch---
Q 047659 61 CVSSPNIAQLI--HVLLQSD---MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR---IG-KI--- 128 (619)
Q Consensus 61 ~~~~~~~~~l~--~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~~--- 128 (619)
|.++.+|.... ..+...+ ...+|+.+|+++++.+|+... +|..+..+|.- .+ ..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~--------------A~A~la~a~~~~~~~~~~~~~~ 256 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY--------------ARAEKALVDIVRHSQHPLDEKQ 256 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHHHSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHHhccCCCchhh
Confidence 56777776544 4444443 458999999999999998766 33433333331 11 10
Q ss_pred -hhHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 129 -DESVEIFAYMSDM-GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 129 -~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
......++..... ..+.++.++..+...+...|++++|+..+++++..+++. |..+...+.-.|++++|.+.++++
T Consensus 257 ~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0111111111111 112255555555555555566666666666666665533 445555555666666666666666
Q ss_pred HHC
Q 047659 205 IQR 207 (619)
Q Consensus 205 ~~~ 207 (619)
...
T Consensus 337 lrL 339 (372)
T 3ly7_A 337 FNL 339 (372)
T ss_dssp HHH
T ss_pred Hhc
Confidence 655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.48 E-value=5.9e-05 Score=56.50 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=43.6
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCc-cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSP-NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
....+.+.|++++|+..|+.+.. |.+.. .+..++.++...|++++|...|++++..+|....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 34445667777777777777766 55666 7777777777777777777777777777766554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00016 Score=54.08 Aligned_cols=63 Identities=10% Similarity=0.160 Sum_probs=36.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..+.+.|++++|...|++++..+|.+... ++..++.+|...|++++|+..|+++++..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDE-------------AYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHH-------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34555566666666666666666655544321 3455666666666666666666666655443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0057 Score=54.43 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc-----CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCH
Q 047659 194 IENAFHMHRQVIQRGFVPN---IVTCNKILKRLCIN-----GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKE-AKL 264 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 264 (619)
...|...++++++.. |+ ...|..+...|... |+.++|.+.|++.++.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 455666666666653 33 44666777777663 77777777777777654433456666666666663 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 047659 265 EKAFQLYNLMMEMDLV 280 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~~ 280 (619)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777766544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0023 Score=46.69 Aligned_cols=64 Identities=8% Similarity=-0.041 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHcCC---hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 114 DYSFLIENYVRIGK---IDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 114 ~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+..++.++...++ .++|..++++.++.+|. ++.++..+...+.+.|++++|+..|+++.+.+|
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 66777777765554 68888888888887665 788888888888888888888888888888777
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0012 Score=64.24 Aligned_cols=96 Identities=6% Similarity=-0.007 Sum_probs=75.8
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc-------CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhc-----CCch
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN-------CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQF-----GKTY 98 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~ 98 (619)
.+...+..+.++|++++|+++++.+.. +.+ ..++..++.+|..+|++++|+.++++++... +..+
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 444556777889999999999998875 333 3455778899999999999999999998752 2222
Q ss_pred hHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 99 NFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+ ....++.|+..|..+|++++|+.+++++++
T Consensus 369 ~-----------~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 V-----------RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp H-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 222789999999999999999999998864
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0013 Score=63.99 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=69.1
Q ss_pred ccCCchhHHHHHHHhhc-------CCCC---ccHHHHHHHHHccCChhHHHHHHHHHHHh-----cCCchhHHHHHHhhc
Q 047659 44 KTNNPTPAIQFFKWTHN-------CVSS---PNIAQLIHVLLQSDMRDVASHVFDKMVIQ-----FGKTYNFFRLFRDSL 108 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~-------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~ 108 (619)
..|++++|+.+++.+.. +.++ .++..++.+|..+|++++|+.++++++.. +++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~--------- 380 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN--------- 380 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH---------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH---------
Confidence 46789999999998776 3333 55678999999999999999999999874 222222
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
....++.|+..|..+|++++|+.+++++++
T Consensus 381 --~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 381 --VASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 122799999999999999999999999864
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.016 Score=54.02 Aligned_cols=74 Identities=7% Similarity=0.012 Sum_probs=47.2
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047659 210 VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYS 287 (619)
Q Consensus 210 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 287 (619)
+.+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4555566666555556677777777777777653 55556666666667777777777777766664 45555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.026 Score=50.21 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=72.0
Q ss_pred hHHHHHHHHHhhCCcc-----chHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCcchH
Q 047659 164 GQYYKLCRAMRGKGFC-----VYEFLMNGLLRK-----GVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN-GQIGNA 232 (619)
Q Consensus 164 ~~A~~~~~~~~~~~~~-----~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~A 232 (619)
..|...++++++.+|+ .|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 5788889999999884 388899999884 99999999999999986323477888888888884 999999
Q ss_pred HHHHHHHHhCCCC--CChhhHHH
Q 047659 233 SSLFDVLLLVGPK--PNVVTFST 253 (619)
Q Consensus 233 ~~~~~~~~~~~~~--~~~~~~~~ 253 (619)
.+.+++.+...+. |+....+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 260 DEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999987665 55443333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0072 Score=58.72 Aligned_cols=89 Identities=4% Similarity=-0.067 Sum_probs=69.1
Q ss_pred ccCChhHHHHHHHHHHHhcC-----CchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC-----CCC-
Q 047659 76 QSDMRDVASHVFDKMVIQFG-----KTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM-----GIY- 144 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~- 144 (619)
..|++++|..++++++.... .+++. ..+++.|+.+|..+|++++|+.+++++++. |+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-----------a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYM-----------LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHH-----------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 56899999999999988532 22221 127899999999999999999999998642 332
Q ss_pred CCH-HhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 145 LSP-DLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 145 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
|+. .+++.++.+|..+|++++|..+++++.+
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 222 3578899999999999999999888653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0082 Score=44.99 Aligned_cols=82 Identities=10% Similarity=0.001 Sum_probs=58.1
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++.....++..+.+.|+++.|...|+.++...+.... .-.....++..|+.+|.+.|+++.|+..++++++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3455677888888999999999999998876321100 000111278899999999999999999999999865
Q ss_pred CCCCHHhHHH
Q 047659 143 IYLSPDLVQR 152 (619)
Q Consensus 143 ~~~~~~~~~~ 152 (619)
|. ++.+...
T Consensus 77 P~-~~~~~~n 85 (104)
T 2v5f_A 77 PE-HQRANGN 85 (104)
T ss_dssp TT-CHHHHHH
T ss_pred CC-CHHHHhh
Confidence 55 4544333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0038 Score=49.68 Aligned_cols=77 Identities=22% Similarity=0.185 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHhhCC-c----cchHHHHHHHHhcCCHHHHHHHH
Q 047659 130 ESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN---SVGQYYKLCRAMRGKG-F----CVYEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 130 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~ 201 (619)
.+.+-|++..+.++ ++..+...+..++++.+ +.++++.+++.+.+.+ | |.+..+..++.+.|++++|++.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34444444444433 35555555555555554 3335555555555444 3 12444445555555555555555
Q ss_pred HHHHHC
Q 047659 202 RQVIQR 207 (619)
Q Consensus 202 ~~~~~~ 207 (619)
+.+++.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.039 Score=59.29 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=81.5
Q ss_pred HHHccCCchhHHH-HHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 41 NLIKTNNPTPAIQ-FFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 41 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
.....+++++|.+ ++..+. +......++..+...|.+++|.+..+.... -.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~---~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------------------~f 659 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE---GKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------------------KF 659 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC---CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------------------HH
T ss_pred HHHHhCCHHHHHHHHHhcCC---chHHHHHHHHHHHhCCChHHheecCCCcch-------------------------he
Confidence 3455888888877 653322 022236666777788888888766532211 12
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHH
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (619)
......|++++|.++.+.+ .++..|..++..+.+.++++.|.+.|.++.. +..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHH
Confidence 3456789999998876433 2678899999999999999999888887643 4444455555555555444
Q ss_pred HHHHHHHC
Q 047659 200 MHRQVIQR 207 (619)
Q Consensus 200 ~~~~~~~~ 207 (619)
+.+.....
T Consensus 729 ~~~~a~~~ 736 (814)
T 3mkq_A 729 LAKDAETT 736 (814)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 44444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0064 Score=48.38 Aligned_cols=70 Identities=9% Similarity=0.058 Sum_probs=52.6
Q ss_pred CCCCccHHHHHHHHHccC---ChhHHHHHHHHHHHhc-C-CchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSD---MRDVASHVFDKMVIQF-G-KTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIF 135 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 135 (619)
+.+..+...++..+.+.+ +.++++.+|+..++.+ | .+.+ .+..|+-+|.+.|++++|++.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd--------------~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD--------------YVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH--------------HHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH--------------HHHHHHHHHHHccCHHHHHHHH
Confidence 567777788888888877 5568888888888876 4 2333 5567777778888888888888
Q ss_pred HHHHhCCCC
Q 047659 136 AYMSDMGIY 144 (619)
Q Consensus 136 ~~~~~~~~~ 144 (619)
+.+++..|.
T Consensus 95 ~~lL~ieP~ 103 (152)
T 1pc2_A 95 RGLLQTEPQ 103 (152)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCCC
Confidence 888886543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.037 Score=43.29 Aligned_cols=110 Identities=8% Similarity=0.003 Sum_probs=75.2
Q ss_pred cCCCCccHHHHHHHHHccCCh------hHHHHHHHHHHHhcCCchhH-HHHHHhhcCCCcccHHHHHHHHHHcCChhhHH
Q 047659 60 NCVSSPNIAQLIHVLLQSDMR------DVASHVFDKMVIQFGKTYNF-FRLFRDSLGDFGCDYSFLIENYVRIGKIDESV 132 (619)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 132 (619)
.|.++++|-..+..+-+.|++ ++-+..|++++..-|..... .+.+.. .|...+ .+...+++++|.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~-------LWIrYA-~~~ei~D~d~aR 80 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFAR-------IQVRFA-ELKAIQEPDDAR 80 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHH-------HHHHHH-HHHHHHCGGGCH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHH-------HHHHHH-HHHHhcCHHHHH
Confidence 378889999999999888999 88889999999876643110 001110 111112 123448999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 133 EIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++|+.+++.+-.- ...|...+..-.++|+...|.+++.+.+..+|
T Consensus 81 ~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 81 DYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 9999997653333 66777777777788888888887777776665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.013 Score=43.96 Aligned_cols=71 Identities=8% Similarity=-0.113 Sum_probs=62.0
Q ss_pred cCChhhHHHHHHHHHccCCchhHHHHHHHhhc---C------CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 29 DLQFNQANAILANLIKTNNPTPAIQFFKWTHN---C------VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
.+++++...+...+.+.|++..|..-|+.+.. + .....+..++.++.+.|+++.|...+++++...|.+..
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 47889999999999999999999999999887 1 12345678999999999999999999999999888765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.23 Score=40.63 Aligned_cols=103 Identities=14% Similarity=0.128 Sum_probs=75.3
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHH
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (619)
......|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999988776 2678899999999999999999998888654 5566667777777777776
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 047659 200 MHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVL 239 (619)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 239 (619)
+-+.....| -++.....+...|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 666665554 2344445555677777777777554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.031 Score=54.34 Aligned_cols=92 Identities=8% Similarity=-0.006 Sum_probs=71.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHH-----CC-CCcCH-HH
Q 047659 495 IRGIASQGSLSSAILLFFQMLKRG---LTPD----VITYSAIIHGLFKGKNISVGLHMFKLMER-----NG-VAPDI-AI 560 (619)
Q Consensus 495 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~~-~~ 560 (619)
+..+...|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|..+++++.. .| -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999999988631 2222 35788899999999999999999988764 22 23333 37
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 561 YNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999988764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.81 E-value=4.9e-06 Score=78.45 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=97.0
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
+.+.+|..++.+.+..|+..+|+..|-++ .+|. .|..++.+..+.|.+++-+..++-..+.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps-----------------~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS-----------------SYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC-----------------SSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH-----------------HHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35555555666665555555555444332 1111 3445555555555555555555444432
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhH----------------------------HHHHHHHHhhCCccchHHHHHHHHhcCC
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQ----------------------------YYKLCRAMRGKGFCVYEFLMNGLLRKGV 193 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~----------------------------A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (619)
. .++..=+.++-+|++.++..+ |.-+|..+ +-|..+..++.+.|+
T Consensus 113 ~--ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~i-----sN~akLAstLV~L~~ 185 (624)
T 3lvg_A 113 A--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGE 185 (624)
T ss_dssp C--CSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS-----CCCTTTSSSSSSCSG
T ss_pred h--cccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhC-----ccHHHHHHHHHHHHH
Confidence 1 123333445555555555433 33222221 114444444555555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNL 273 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 273 (619)
+..|.+..++ ..++.+|..+-.+|...+.+..|.-.--.++- .++ ....++..|-..|.+++-+.+++.
T Consensus 186 yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 186 YQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5554432211 23566677777777777766666554444431 222 123445556666777776666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc
Q 047659 274 MMEMDLVPDLIIYSILIDGLFKA 296 (619)
Q Consensus 274 m~~~~~~~~~~~~~~ll~~~~~~ 296 (619)
-... -.....+|+-|.-.|++-
T Consensus 255 glgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 255 ALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HhCC-CchhHHHHHHHHHHHHhc
Confidence 5532 122445566665555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.45 Score=38.89 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=21.4
Q ss_pred HHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKM 90 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (619)
.++.|+++.|.++.+.+ .+...|..++...+..|+++-|+..|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34445555555544433 23444455555555555555444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.17 Score=39.72 Aligned_cols=115 Identities=11% Similarity=0.062 Sum_probs=83.2
Q ss_pred ccCChhhHHHHHHHHHccCCc------hhHHHHHHHhhc--CCC-CccHHHHHHHH------HccCChhHHHHHHHHHHH
Q 047659 28 SDLQFNQANAILANLIKTNNP------TPAIQFFKWTHN--CVS-SPNIAQLIHVL------LQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~~~~--~~~-~~~~~~l~~~~------~~~g~~~~A~~~~~~~~~ 92 (619)
.+.+|+.-..-+..+-+.|++ +..+++|+.+.. |+. ...|...+.++ ...++.++|++.|+.+++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455777777777777778999 888899998877 333 23333333222 345899999999999988
Q ss_pred hcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 93 QFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
. .+.. ..+|...++.=.++|++..|.+++.+.+..++.| ...+...++-+
T Consensus 89 ~-hKkF-------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 89 N-CKKF-------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp H-CTTB-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred H-hHHH-------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 6 4443 2388888899999999999999999999988774 44444444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.096 Score=56.24 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=71.7
Q ss_pred CC-hhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 30 LQ-FNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 30 ~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+. +..+..++..+.+.|.++.|+++.+.. ..-+......|++++|.++.+.+ ++..
T Consensus 626 i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~---------~~~f~~~l~~~~~~~A~~~~~~~-----~~~~--------- 682 (814)
T 3mkq_A 626 VEGKDSLTKIARFLEGQEYYEEALNISPDQ---------DQKFELALKVGQLTLARDLLTDE-----SAEM--------- 682 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHCCCH---------HHHHHHHHHHTCHHHHHHHHTTC-----CCHH---------
T ss_pred CCchHHHHHHHHHHHhCCChHHheecCCCc---------chheehhhhcCCHHHHHHHHHhh-----CcHh---------
Confidence 35 667778888888889999988776422 23356678899999999885443 1122
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKL 169 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 169 (619)
.|..++..+.+.|+++.|.++|.++.. +..+...+...|+.+...++
T Consensus 683 -----~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 683 -----KWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 889999999999999999999998732 22344444445555544433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.092 Score=40.09 Aligned_cols=94 Identities=16% Similarity=0.049 Sum_probs=67.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHH---HHHHHHHHHHCCCCc--CHHHHHHHHHHHHH
Q 047659 496 RGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISV---GLHMFKLMERNGVAP--DIAIYNVLLNMLIK 570 (619)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 570 (619)
........+..+.+-|......|. |+..+--.+.+++++..+... ++.+++...+.+ .| .....-.|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 333344455667777777666553 677777778888888887666 888888887753 23 34455667778999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH
Q 047659 571 ECNLDAALKLFGQLTDRGLEPDI 593 (619)
Q Consensus 571 ~g~~~~A~~~~~~~~~~g~~p~~ 593 (619)
.|++++|.+.++.+++ +.|+.
T Consensus 87 lg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTC
T ss_pred hhhHHHHHHHHHHHHH--hCCCC
Confidence 9999999999999998 57753
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.21 Score=55.54 Aligned_cols=161 Identities=11% Similarity=0.138 Sum_probs=111.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCc---hhHHHHHH---hh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKT---YNFFRLFR---DS 107 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~---~~ 107 (619)
....++..+...+.++.|.++..++. .++.....++++++..|++++|...|+++....... ......+. ..
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~--~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLN--SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhcc--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 45567777888999999999888876 455566889999999999999999999874322111 11111111 11
Q ss_pred cC---CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--
Q 047659 108 LG---DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP----DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-- 178 (619)
Q Consensus 108 ~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 178 (619)
.+ .....|..++..+-+.|.++.++++-..+++.....+. ..|..+.+.+...|++++|...+..+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~ 971 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK 971 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH
Confidence 11 11125788888999999999999988888765333232 2578888999999999999888877765444
Q ss_pred cchHHHHHHHHhcCCHHH
Q 047659 179 CVYEFLMNGLLRKGVIEN 196 (619)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~ 196 (619)
+....++..++..|..+.
T Consensus 972 ~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhCCChhh
Confidence 346666666666665443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.57 Score=35.87 Aligned_cols=68 Identities=12% Similarity=-0.020 Sum_probs=57.8
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047659 522 DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLE 590 (619)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 590 (619)
+...++..++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4455677888889999999999999887553 5788999999999999999999999999999999874
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.51 E-value=3.1e-05 Score=73.16 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=137.8
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGL 188 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~ 188 (619)
.+.+|..|+.+.++.|++.+|++.|=+. .|+..|..++.+..+.|.+++-+..+.-+.+..-++ =+.++-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3348899999999999999988877322 256677888888888899988888887766554433 67788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047659 189 LRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF 268 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 268 (619)
++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 88888765444331 46666667778888888888888777665421 223333444555555554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 269 QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
+.-++. -+..||..+-.+|...+.+..|.-.--.+.-.. .-...++..|-..|-+++.+.+++.-...
T Consensus 191 daArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl- 258 (624)
T 3lvg_A 191 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL- 258 (624)
T ss_dssp TTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-
T ss_pred HHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-
Confidence 332211 245566666667777666665544433333211 11223455566667777666666665532
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 047659 349 FLPNVISYSILIKGLCQQ 366 (619)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~ 366 (619)
-......|+.|.-.|++-
T Consensus 259 ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 134566666666666553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.089 Score=42.19 Aligned_cols=60 Identities=5% Similarity=-0.060 Sum_probs=50.5
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCc---------cHHHHHHHHHccCChhHHHHHHHHHHHh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSP---------NIAQLIHVLLQSDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (619)
.+...+..+...|.++.|+-+.+.+.. ..++. +...++.++...|++..|...|++++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 678888899999999999999998776 22333 5578889999999999999999998764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.19 Score=38.41 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=66.6
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH---HHHHHHHHhhCC-c----cchHHHHHHHHhcCCH
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQ---YYKLCRAMRGKG-F----CVYEFLMNGLLRKGVI 194 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~ 194 (619)
........+.+-|++....+. ++..+...++.+++++++... ++.+++.+.+.+ | +....+.-++.+.|++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334456667777777766554 688888899999999887766 888999988877 5 2377788888899999
Q ss_pred HHHHHHHHHHHHCC
Q 047659 195 ENAFHMHRQVIQRG 208 (619)
Q Consensus 195 ~~A~~~~~~~~~~~ 208 (619)
+.|++.++.+++..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998873
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.83 Score=35.00 Aligned_cols=137 Identities=11% Similarity=0.118 Sum_probs=73.4
Q ss_pred cCChhHHHHHHHHHhhCCc-cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 047659 160 SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDV 238 (619)
Q Consensus 160 ~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 238 (619)
.|..++..++..+..+..+ +.++..+--....-+-+-..++++.+-+. -|.. .+|++......+-.
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~C~~~ 86 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVECGVI 86 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHHHHHH
Confidence 4555555555555555444 33555554444444444444444444322 1211 23444444444433
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047659 239 LLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315 (619)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 315 (619)
+ ..+.......+..+...|.-++-.+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 87 ~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 87 N-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp T-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred h-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3 12344455556666667777777777766433 23556666667777777777777777777777766653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.46 Score=45.44 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
..++..+...|++++|+..++.+....|- +...+..++.+|.+.|+..+|++.|+++
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555555555555555555433 5555555555555555555555555554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.19 E-value=1.2 Score=31.97 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 538 NISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICG 602 (619)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 602 (619)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++..+.+ ..+...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 34456666666666777788888888888888888888888888877743 22334556666654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.91 E-value=1 Score=36.09 Aligned_cols=131 Identities=8% Similarity=-0.051 Sum_probs=72.8
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
..+.+++..-+..+...|.++.|+.+...++.....+++.+..-. --.+...++.++...|++..|...|+.+++
T Consensus 17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~-----~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQ-----KYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455677778888899999999999999887765332222100000 001677889999999999999999999754
Q ss_pred CC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 141 MG--IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CVYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 141 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
.. ...++.+...+. . ....... ..... ++-..+..|+.+.+++++|+.+++.+...
T Consensus 92 ~~k~l~k~~s~~~~~~-~---~ss~p~s-------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG-N---SASTPQS-------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHCC-------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHhcCCCcccccc-c---cCCCccc-------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 21 111111111110 0 0000000 00111 22445777888888888888887776544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.30 E-value=2.9 Score=43.42 Aligned_cols=139 Identities=8% Similarity=0.011 Sum_probs=78.7
Q ss_pred ChhhHHHHHHHHHccCC-chhHHHHHHHhhc-CCCCccHHHHH--HHHHccC-ChhHHHHHHHHHHHhcC--------Cc
Q 047659 31 QFNQANAILANLIKTNN-PTPAIQFFKWTHN-CVSSPNIAQLI--HVLLQSD-MRDVASHVFDKMVIQFG--------KT 97 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~-~~~~~~~~~l~--~~~~~~g-~~~~A~~~~~~~~~~~~--------~~ 97 (619)
+......++..+...+. .+.|+.+|+.+.. .+....+...+ .++.+.+ +=-+|..++.+.++... ..
T Consensus 247 ~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 247 NNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp SSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred cHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 34445555555555666 4789999998886 33333333222 2222232 22345666666554210 00
Q ss_pred hhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 98 YNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
.+.... .+........=+..+...|+++-|+.+-++.....|. +..+|..|+.+|...|+++.|+-.+..+.
T Consensus 327 ~~~~~~----~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 327 ADSARL----MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccc----cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 000000 0000002222244566788888888888888876444 67888888888888888888888777764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.19 E-value=2.4 Score=32.39 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047659 539 ISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGY 603 (619)
Q Consensus 539 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 603 (619)
.-+..+-++.+...++.|++.+..+.+++|.+.+|+..|.++++-.+.+ ..+...+|..++...
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3345566666666777888888888888888888888888888888753 334455666666543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=14 Score=37.44 Aligned_cols=116 Identities=13% Similarity=-0.019 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047659 192 GVIENAFHMHRQVIQRGFVPNIVTCNKILKRLC----INGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 192 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 267 (619)
.+.+.|...+....+.. ..+......+-...+ ..+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 36777877777776543 233333332222222 2333556666666654432 2222233333344567888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 268 FQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
.+.|+.|...... .....-=+.+++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888877653211 233333345566777888888888887764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.14 E-value=0.97 Score=46.83 Aligned_cols=86 Identities=7% Similarity=-0.067 Sum_probs=57.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC---------ChHHHHHHHHHHHHC---
Q 047659 485 KPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK---------NISVGLHMFKLMERN--- 552 (619)
Q Consensus 485 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~~~--- 552 (619)
+-+..-|..|.....+.+++++|.+.|+..+.. +-+...+..|++.|.+.+ +.+..+...=++...
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~R 687 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCR 687 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhh
Confidence 445666888888888888888888888888865 567788888888888766 555555544444321
Q ss_pred -CCCcCHHHHHHHHHHHHHcC
Q 047659 553 -GVAPDIAIYNVLLNMLIKEC 572 (619)
Q Consensus 553 -~~~~~~~~~~~l~~~~~~~g 572 (619)
-...+......+.+.+.+.|
T Consensus 688 wY~efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 688 YYNYCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TTBCCCHHHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHHHHhC
Confidence 11234555566666666655
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.10 E-value=2.8 Score=32.18 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=49.4
Q ss_pred CCCHHhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 047659 520 TPDVITYSAIIHGLFKGKNI---SVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDI 593 (619)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 593 (619)
.|+..+--.+.+++++..+. ..++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 45666655666677766643 46777777777654222355666777788888888888888888887 56763
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.07 E-value=5.3 Score=44.41 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047659 215 TCNKILKRLCINGQIGNASSLFDVLLLVGPKPNV----VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILI 290 (619)
Q Consensus 215 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 290 (619)
-|..++..+-+.+.++.+.+.-....+.....+. ..|..+..++...|++++|...+-.+..... -...+..++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3566666777777777777666655543221111 2466677777777777777777776665432 345566666
Q ss_pred HHHHhcCCHHH
Q 047659 291 DGLFKAGRLKE 301 (619)
Q Consensus 291 ~~~~~~~~~~~ 301 (619)
...+..|..+.
T Consensus 979 ~~lce~~~~~~ 989 (1139)
T 4fhn_B 979 NQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHCCHHH
T ss_pred HHHHhCCChhh
Confidence 66666555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.98 E-value=1.7 Score=41.44 Aligned_cols=71 Identities=10% Similarity=-0.006 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChhhHHHH
Q 047659 149 LVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQR-----GFVPNIVTCNKI 219 (619)
Q Consensus 149 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l 219 (619)
+...++..+...|++.+|+..+..+....| + .+..++.++.+.|+..+|++.|+...+. |+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 456678888999999999999999999998 3 3999999999999999999999987653 888887765433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.28 E-value=3.8 Score=31.40 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=51.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCChh---HHHHHHHHHhhCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVG---QYYKLCRAMRGKGF----CVYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
+..|++.+....+.+++++.+.+ +++.+++.+.+.++ +.+..+..++.+.|+++.|++..+.+++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46678888888888888877653 67888888877776 22777778888888888888888888876
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.36 E-value=16 Score=35.35 Aligned_cols=151 Identities=9% Similarity=0.069 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhh--CCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HH
Q 047659 456 FNTLMDGCCRLKRATDTVKLFMLMGM--YNIKPD---VITHTVLIRGIASQGSLSSAILLFFQMLK----RGLTPD--VI 524 (619)
Q Consensus 456 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~ 524 (619)
...|...+...|++.+|..++..+.. .+.... ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 35677888889999999999988753 221111 23566677888889999999988888643 222222 23
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC-CCCcCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047659 525 TYSAIIHGLFKGKNISVGLHMFKLMERN-GVAPDIAIY----NVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTI 599 (619)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 599 (619)
.+...+..+...+++.+|.+.|.++... ....|...+ ..++.+..-.+....-..++........-++.+.+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 5567777778888888888887776542 111233322 23333334445555555555555554444567778888
Q ss_pred HHHHhhc
Q 047659 600 ICGYCSL 606 (619)
Q Consensus 600 l~~~~~~ 606 (619)
+.+|...
T Consensus 300 ~k~f~~~ 306 (445)
T 4b4t_P 300 VKLFTTN 306 (445)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 8888654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.04 E-value=1.4 Score=38.69 Aligned_cols=59 Identities=14% Similarity=-0.044 Sum_probs=44.3
Q ss_pred HHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 72 HVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 72 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+.+.|.+++|+......++..|.+.+ ....+.+.++-.|+++.|.+-++...+..+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~--------------~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDAS--------------LRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHH--------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3456778888888888888888777766 6777788888888888888888777765443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.67 E-value=2 Score=37.74 Aligned_cols=58 Identities=9% Similarity=0.003 Sum_probs=47.0
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
....+.|++++|++....-++..|. |......++..+|-.|++++|..-++.+.+.+|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3456778888888888888887665 888888888888888888888888888887777
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.52 E-value=33 Score=36.59 Aligned_cols=525 Identities=12% Similarity=0.031 Sum_probs=234.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHc---cCChhHHHHHHHHHHHhcCCchh----HHHHHHh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQ---SDMRDVASHVFDKMVIQFGKTYN----FFRLFRD 106 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~ 106 (619)
.+..++...++.|...+|..+.-.+.. .+.....+.-... .+++.+...+.-.+....+.+.+ .++.+..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~er---LD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~ 223 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYR---LDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFD 223 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh---HHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Confidence 456666666788888888887766653 1111111110000 12333333333333333333322 2222222
Q ss_pred hcCCC-cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-------
Q 047659 107 SLGDF-GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF------- 178 (619)
Q Consensus 107 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------- 178 (619)
.+... ..-|..+++++.+.++.+.+.++|+.+.+ ..+...-..+.-.+.+.++..--.++.+.+.....
T Consensus 224 Iy~k~~~~dy~~a~~~ai~LnD~~li~~if~~l~~---~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~I 300 (963)
T 4ady_A 224 FLMNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKE---ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNI 300 (963)
T ss_dssp HHHHSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhCCchhHHHHHHHHHHcCCHHHHHHHHHHHHh---cccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHH
Confidence 22111 11577788888899999999999999874 22555555555555554432221222222211100
Q ss_pred --c-chHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCC-Ch--hhHHHHHHHHHhcCCcchH-HHHH-HHHHhCCCCCChh
Q 047659 179 --C-VYEFLMNGLL-RKGVIENAFHMHRQVIQRGFVP-NI--VTCNKILKRLCINGQIGNA-SSLF-DVLLLVGPKPNVV 249 (619)
Q Consensus 179 --~-~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~-~~--~~~~~ll~~~~~~~~~~~A-~~~~-~~~~~~~~~~~~~ 249 (619)
. ....+-..+. +.+..+ ..+.+.+... +.. +. .+-..+.+++...|--.+. .... +.+-+. .+...
T Consensus 301 Lsg~~~~~Lyl~FL~~~n~~d--~~~l~~~K~~-ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k 375 (963)
T 4ady_A 301 LSGLPTCDYYNTFLLNNKNID--IGLLNKSKSS-LDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAK 375 (963)
T ss_dssp TTSHHHHHHHHHHHHHHCCCC--HHHHHHHHHH-SCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHH
T ss_pred hCCCChHHHHHHHHHhccccc--hhhHHHHHhh-hcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc--chHHH
Confidence 0 0111111111 111111 1112222111 111 11 1222445556666644332 2211 122111 11111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYS--ILIDGLFKAGRLKEGNELLLTALDRGL-------KLDVVV 320 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~ 320 (619)
.-.+..-+....|+.++++.+++.....+-..+..+-. .+.-+....|..+++..++.......- .+....
T Consensus 376 ~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 376 FTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred HHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHH
Confidence 11112234456677777777766554321112322222 223334455555566666666554321 011111
Q ss_pred HHHHHHH--HHcCCCHHHHHHHHHHHHhCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047659 321 FSSVMDA--YVGIGDVGRAVQTYDRMLNGGFLPNVIS--YS--ILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSL 394 (619)
Q Consensus 321 ~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 394 (619)
-..+.-+ |...++ +++.+.+..+.... +... .. .+...+.-.|+.+....++..+.+. . +..+...+
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--~-~e~vrR~a 528 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--Q-HGNITRGL 528 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--S-CHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--C-cHHHHHHH
Confidence 2222223 333343 34455555544421 2211 11 2222334556666666666666543 1 22333333
Q ss_pred HH--HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 047659 395 ID--GFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDT 472 (619)
Q Consensus 395 l~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 472 (619)
.- ++...|+.+.+..+.+.+... .+... ....-.++.-+|+..|+....
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~---~dp~v--------------------------Rygaa~alglAyaGTGn~~aI 579 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLAS---DESLL--------------------------RYGGAFTIALAYAGTGNNSAV 579 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHC---SCHHH--------------------------HHHHHHHHHHHTTTSCCHHHH
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhC---CCHHH--------------------------HHHHHHHHHHHhcCCCCHHHH
Confidence 33 334567777777777766653 11110 001112344566777887777
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHHHH
Q 047659 473 VKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNI-SVGLHMFKLMER 551 (619)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 551 (619)
.++++.+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++.++..+..
T Consensus 580 q~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 580 KRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77887776531 1222222223333444566666667766665543 45554444444444445543 567778888765
Q ss_pred CCCCcCHHHHHHHHHHHHHc--C-------CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCccc
Q 047659 552 NGVAPDIAIYNVLLNMLIKE--C-------NLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNSCL 610 (619)
Q Consensus 552 ~~~~~~~~~~~~l~~~~~~~--g-------~~~~A~~~~~~~~~-~g~~p~~~~~~~ll~~~~~~~~~~ 610 (619)
. +|..+-..-+.++..- | ++...++.+..... +.-.|+...-..+..|....|...
T Consensus 658 D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 658 D---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp C---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred C---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 3 3444443333344332 2 33444444333332 223445666666666666666543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.51 E-value=8.6 Score=29.91 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=45.5
Q ss_pred CCCHHhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 520 TPDVITYSAIIHGLFKGKNI---SVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
.|+..+--.+.+++++..+. .+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 45665555566666666543 45667777766643222344555666677788888888888888877 5665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.43 E-value=4.5 Score=29.11 Aligned_cols=61 Identities=10% Similarity=0.184 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047659 504 LSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLL 565 (619)
Q Consensus 504 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 565 (619)
.=+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-.+.. ..+...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 3345555566666667777777777777777777777777777766653 122233455544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.34 E-value=22 Score=34.43 Aligned_cols=189 Identities=12% Similarity=0.039 Sum_probs=94.8
Q ss_pred CChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 78 DMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 78 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
|++++|.+.+-.+.+......+ .+....+...++..|...|+++...+.+..+.+.... -......+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d--------~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~ 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASD--------LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKV 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCS--------TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccc--------hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 5666777666555443211111 1111225667888888899998888877766654322 222233333322
Q ss_pred ----HhcCChhHH--HHHHHHHhhC--C-c--cc-----hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhH
Q 047659 158 ----VDSNSVGQY--YKLCRAMRGK--G-F--CV-----YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPN-----IVTC 216 (619)
Q Consensus 158 ----~~~~~~~~A--~~~~~~~~~~--~-~--~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~ 216 (619)
......+.. ..+.+..... + . ++ ...+...+...|++.+|..++..+...-...+ ...+
T Consensus 101 ~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~ 180 (445)
T 4b4t_P 101 MEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 180 (445)
T ss_dssp HHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 222322211 1111111110 1 0 11 24566677777777777777777654311111 2344
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLL----VGPKPN--VVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
...++.|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555666667777777766666531 111222 2234445555566666666666655554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.82 E-value=11 Score=29.37 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=50.8
Q ss_pred CCCCHHhHHHHHHHHHhcCChh---HHHHHHHHHhhCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVG---QYYKLCRAMRGKGF----CVYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
..|++.+....+.+++++.+.. +++.+++.+.+.++ +....+..++.+.|+++.|++..+.+++.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3578888888888888877654 67778888877766 22777778888888888888888888887
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=83.85 E-value=49 Score=35.30 Aligned_cols=268 Identities=13% Similarity=0.065 Sum_probs=135.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 047659 326 DAYVGIGDVGRAVQTYDRMLNGGFLPNVI--SYSILIKGLCQQGRLVEACGLFGQVLIRRL-------EPSLLTYSSLID 396 (619)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~ 396 (619)
-+....|+.++++.++......+-..+.. .-..+.-+....|...++..++.......- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556777777777777665421112322 223333445555655667776666554311 011111222222
Q ss_pred HHHhcCC-hHHHHHHHHHHHHcCCCCCHhh-HHHHH-----hc--cHHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHh
Q 047659 397 GFCKSGK-LRDGFSLYDNMIKRGLKPDAVV-CSLLI-----NG--LMGDALRFFFQSVRMTLIPNLFIFN--TLMDGCCR 465 (619)
Q Consensus 397 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~-~~~ll-----~~--~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 465 (619)
+.+-.|. -+++...+..+....- .... ...+- -+ ..+....++..+.+.. +..... .+.-++..
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 2222332 2344555555444211 1111 11111 11 3333344444444321 222333 33334447
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHH
Q 047659 466 LKRATDTVKLFMLMGMYNIKPDVITH--TVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGL 543 (619)
Q Consensus 466 ~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 543 (619)
.|+.+.+..+.+.+.... .|....- .++..+|+..|+......++..+.+.. ..+..-...+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 789999999988887531 2222222 234456778899888888999988742 233444444444555677777777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047659 544 HMFKLMERNGVAPDIAIYNVLLNMLIKECNL-DAALKLFGQLTDRGLEPDIITYNTIICGYC 604 (619)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 604 (619)
++++.+.+.+ .|....-..+.-+....|.. .++..++..+.. .+|..+-..-+-+++
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 8877666653 34444444444444555554 578888888874 345444433333433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.13 E-value=9 Score=29.30 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 047659 506 SAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLN 566 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 566 (619)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-.+.+ ..+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45555666666677888888888888888888888888888877653 2333445665543
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.03 E-value=4.5 Score=39.54 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccH-------HHHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNI-------AQLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
...++.+++.|+..+.+++|..+.....-|...... .-++++...++++.+|.+.+..++..-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 347888999999999999999999988643322222 236788999999999999999998865543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.73 E-value=9.1 Score=36.99 Aligned_cols=61 Identities=15% Similarity=0.026 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM--GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+...++..|.+.|+++.|.+.|.++... +...-...+..+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7788899999999999999999888753 233345677778888888888888888877764
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.24 E-value=43 Score=32.80 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC---CHH---hHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYL---SPD---LVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
+++.+++.|...+.++.|..+..+..- |.. +.. -+..+++.+.-++++.+|.+.+..+.+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 566667777777777777777766631 111 111 1123444455555555555555554443
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.93 E-value=9.4 Score=41.36 Aligned_cols=128 Identities=10% Similarity=0.154 Sum_probs=81.0
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCc---hhH---HHHH
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKT---YNF---FRLF 104 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~---~~~~ 104 (619)
.+.....++..+...|.++-|.++..|+.. ++..-..++++++..|++++|...|+++-...... ... ...+
T Consensus 809 ~~~~~~~l~~~L~~~~~~~~a~eL~~~~~~--t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~l 886 (950)
T 4gq2_M 809 ENDLVTELVEKLFLFKQYNACMQLIGWLNS--DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 886 (950)
T ss_dssp SCCHHHHHHHHHHHTTCHHHHHHHGGGCCS--SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHH
T ss_pred CCccHHHHHHHHHHhcHHHHHHHHHhhcCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhc
Confidence 344555678888889999999998888873 55556789999999999999999999886432211 000 0111
Q ss_pred HhhcCCCc---ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhc
Q 047659 105 RDSLGDFG---CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD----LVQRLMSCLVDS 160 (619)
Q Consensus 105 ~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 160 (619)
........ ..|..++..+-+.+-++.++++-+.+++.-...|+. .|..+.++.+..
T Consensus 887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 11111111 156777777777777777777777777542222332 455555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 619 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.71 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.44 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.3 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.28 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.24 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.18 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.03 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.93 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.87 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.82 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.8 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.46 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.37 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.36 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.33 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.27 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.23 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.21 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.17 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.16 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.14 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.92 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.9 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.55 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.39 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.82 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.58 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.05 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.41 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.27 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.3 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.23 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.41 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.21 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.09 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.4e-22 Score=197.22 Aligned_cols=379 Identities=16% Similarity=0.102 Sum_probs=318.8
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
+...+.+.|++++|++.|+.+.. |.++.++..++.++.+.|++++|...|+++++.+|.... ++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------a~ 70 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE--------------AY 70 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HH
Confidence 45567789999999999999987 888899999999999999999999999999999988776 88
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKG 192 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~ 192 (619)
..++.+|.+.|++++|+..+....+..+. +..............+....+............ . ............+
T Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (388)
T d1w3ba_ 71 SNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS
T ss_pred HHHHHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887554 666666677777777777777777766665555 2 2666777777888
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
....+...+....... +.+...+..+...+...|++++|...+++.....+. +...|..+...+...|++++|...++
T Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 227 (388)
T d1w3ba_ 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred hhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHH
Confidence 9999999888888775 556778888889999999999999999998876433 57788899999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 047659 273 LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPN 352 (619)
Q Consensus 273 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (619)
.....+.. +...+..+...+.+.|++++|...+++..+.... +..++..+...+...|++++|.+.++...... +.+
T Consensus 228 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 304 (388)
T d1w3ba_ 228 RALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTH 304 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTC
T ss_pred HhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Ccc
Confidence 98876443 6778888899999999999999999999887543 67889999999999999999999999888753 567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhc
Q 047659 353 VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLING 432 (619)
Q Consensus 353 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 432 (619)
...+..+...+...|++++|.+.+++..+.... +...+..+..+|.+.|++++|...|++..+. .|+
T Consensus 305 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~---------- 371 (388)
T d1w3ba_ 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT---------- 371 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTT----------
T ss_pred chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC----------
Confidence 788889999999999999999999999876332 5677888999999999999999999998875 454
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047659 433 LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKR 468 (619)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 468 (619)
+..+|..+..+|.+.|+
T Consensus 372 -------------------~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 372 -------------------FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp -------------------CHHHHHHHHHHHHHTCC
T ss_pred -------------------CHHHHHHHHHHHHHcCC
Confidence 55567777777766654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.4e-22 Score=194.50 Aligned_cols=381 Identities=15% Similarity=0.085 Sum_probs=227.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD 148 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 148 (619)
.++..+.+.|++++|.+.|+++++.+|.+.+ ++..++.+|.+.|++++|+..|+++++.+|. ++.
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 68 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTG--------------VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAE 68 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 3567778888899999999888888887766 7788888888888999999888888887655 678
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 047659 149 LVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI 225 (619)
Q Consensus 149 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 225 (619)
++..++.+|.+.|++++|+..+....+..+.. ...........+....+........... ................
T Consensus 69 a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 147 (388)
T d1w3ba_ 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 88888888888888888888888887766622 4444444444555555555544444443 3333444444455555
Q ss_pred cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 226 NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNEL 305 (619)
Q Consensus 226 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 305 (619)
.+....+...+.......+ .+...+..+...+...|++++|...++...+.... +..++..+...+...|++++|...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~ 225 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHH
Confidence 5666666666665554422 24455555666666666666666666666554322 445556666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047659 306 LLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLE 385 (619)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 385 (619)
++.....+.. +...+..+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|.+.++...... +
T Consensus 226 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 302 (388)
T d1w3ba_ 226 YLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-P 302 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-T
T ss_pred HHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-C
Confidence 6666554332 44555555556666666666666666655542 2234455555555555566666655555554432 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 047659 386 PSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCR 465 (619)
Q Consensus 386 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (619)
.+...+..+...+.+.|++++|+..+++..+. .|+ +..++..+..++.+
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~-----------------------------~~~~~~~la~~~~~ 351 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALEV--FPE-----------------------------FAAAHSNLASVLQQ 351 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTT-----------------------------CHHHHHHHHHHHHT
T ss_pred ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------------------------CHHHHHHHHHHHHH
Confidence 24444555555555555555555555554432 222 33344445555555
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047659 466 LKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQG 502 (619)
Q Consensus 466 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 502 (619)
.|++++|...|++..+.. +-+...|..+..+|.+.|
T Consensus 352 ~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 352 QGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 555555555555554432 223344444544444443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.1e-15 Score=141.87 Aligned_cols=226 Identities=11% Similarity=-0.011 Sum_probs=158.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
........+.+.|++++|+..|+.+.. |.++.+|..++.++...|++++|...|+++++.+|....
T Consensus 21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------------ 88 (323)
T d1fcha_ 21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT------------ 88 (323)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccc------------
Confidence 344667788999999999999999988 888999999999999999999999999999999888776
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh---------------HHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL---------------VQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
.+..++..|...|++++|.+.++.+....+. .... ....+..+...+.+.+|.+.|.++.+.
T Consensus 89 --~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 89 --ALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccccccccccccccccccccchhhHHHhccc-hHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999876443 1111 111112233344555666666666555
Q ss_pred Cc---cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhH
Q 047659 177 GF---CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTF 251 (619)
Q Consensus 177 ~~---~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 251 (619)
+| +. +..+...+...|++++|...++..+... +.+..+|..+...+...|++++|.+.|++..+..+. +..+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHH
Confidence 54 11 4555566666666666666666666553 344555666666666666666666666666554222 34556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 252 STLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 252 ~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
..+..+|.+.|++++|++.|++..+
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666666666554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1e-14 Score=137.02 Aligned_cols=232 Identities=14% Similarity=0.074 Sum_probs=153.2
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
+.+.....+..+.+.|++++|...|+++++.+|.+.+ +|..++.+|...|++++|+..|+++++..
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------a~~~lg~~~~~~~~~~~A~~~~~~al~~~ 83 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME--------------AWQYLGTTQAENEQELLAISALRRCLELK 83 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCChHHHHHHHHhhhccc
Confidence 4456678899999999999999999999999998877 88999999999999999999999999876
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hH---------------HHHHHHHhcCCHHHHHHHHHHH
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YE---------------FLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~---------------~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
|. +...+..++.+|...|++++|++.++.+....|+. .. ..+..+...+...+|.+.+..+
T Consensus 84 p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 84 PD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cc-cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 65 78899999999999999999999999998877621 10 1111222334445555555554
Q ss_pred HHCCC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 047659 205 IQRGF-VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDL 283 (619)
Q Consensus 205 ~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 283 (619)
++... ..+...+..+...+...|++++|...|++.....+. +...|..+...+...|++++|.+.|+...+.... +.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-cH
Confidence 44321 123344444555555555555555555555543222 3444555555555555555555555555543211 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 284 IIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 284 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
.++..+..+|.+.|++++|.+.|++.++
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555555555555555555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8.6e-12 Score=115.26 Aligned_cols=204 Identities=9% Similarity=-0.003 Sum_probs=165.1
Q ss_pred HHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccC-ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSD-MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
...+.+++.+++|++.++.++. |.+..+|...+.++...| ++++|...+++++..+|++.. +|
T Consensus 50 ~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~--------------a~ 115 (315)
T d2h6fa1 50 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ--------------VW 115 (315)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH--------------HH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh--------------HH
Confidence 3445678899999999999998 888899999999988876 589999999999999998887 88
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKG 192 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~ 192 (619)
..++..+.+.|++++|++.++.+++..+. +..+|..++.++.+.|++++|++.++++++.+| +. |..+..++...+
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcc
Confidence 99999999999999999999999998766 899999999999999999999999999999998 33 777777766655
Q ss_pred C------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 047659 193 V------IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP-NVVTFSTLINAFC 259 (619)
Q Consensus 193 ~------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 259 (619)
. +++|++.+..+++.. +.+...|+.+...+.. ...+++.+.++...+..+.+ +...+..+...|.
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred ccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 5 578888888888875 5677788777666544 44677888888777643433 2334445555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.6e-11 Score=113.39 Aligned_cols=216 Identities=10% Similarity=0.034 Sum_probs=173.1
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC-ChhhHHHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG-KIDESVEIFAYMS 139 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 139 (619)
|...+++..++.++.+.+.+++|+..++++++.+|.+.. +|+..+.++...| ++++|+..++.++
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~--------------a~~~r~~~l~~l~~~~~eal~~~~~al 105 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT--------------VWHFRRVLLKSLQKDLHEEMNYITAII 105 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChH--------------HHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 344556667788888999999999999999999999888 8899999988876 5899999999999
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047659 140 DMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 216 (619)
+..|. +..+|..+..++.+.|++++|++.+.++++.+| +. |..+..++...|++++|++.++.+++.+ +.+...|
T Consensus 106 ~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~ 183 (315)
T d2h6fa1 106 EEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVW 183 (315)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHH
Confidence 98766 899999999999999999999999999999998 33 8889999999999999999999999986 6678888
Q ss_pred HHHHHHHHhcCC------cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 047659 217 NKILKRLCINGQ------IGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP-DLIIYSIL 289 (619)
Q Consensus 217 ~~ll~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l 289 (619)
+.+..++.+.+. +++|.+.+.+.++..+. +...|+.+...+.. ...+++.+.++...+....+ +...+..+
T Consensus 184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 261 (315)
T d2h6fa1 184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFL 261 (315)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence 888777777665 45788888887776443 67777777665544 44677777777776543222 34555555
Q ss_pred HHHHH
Q 047659 290 IDGLF 294 (619)
Q Consensus 290 l~~~~ 294 (619)
+..+.
T Consensus 262 ~~~y~ 266 (315)
T d2h6fa1 262 VDIYE 266 (315)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=4.6e-12 Score=114.26 Aligned_cols=209 Identities=11% Similarity=-0.017 Sum_probs=141.1
Q ss_pred chhHHHHHHHhhc------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH
Q 047659 48 PTPAIQFFKWTHN------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 48 ~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (619)
.+.|+..++.+.. +.....+..++.++.+.|++++|...|++++..+|+.+. +|..++.+
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~--------------a~~~lg~~ 80 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE--------------VFNYLGIY 80 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH--------------HHhhhchH
Confidence 3445555555554 223356778899999999999999999999999988877 88999999
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~ 198 (619)
|.+.|++++|+..|+++++..|. ++.++..++.+|...|++++|+..|++.++..| +. ...+..++...+..+.+.
T Consensus 81 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
T d1xnfa_ 81 LTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 159 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999987665 677889999999999999999999999998888 33 333444445555555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC-----CC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 199 HMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP-----KP-NVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
.+........ ++...++ ++..+ .+..... ..++....... .| ...+|..+...+...|++++|.+.|+
T Consensus 160 ~~~~~~~~~~--~~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 233 (259)
T d1xnfa_ 160 VLKQHFEKSD--KEQWGWN-IVEFY--LGNISEQ-TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 233 (259)
T ss_dssp HHHHHHHHSC--CCSTHHH-HHHHH--TTSSCHH-HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhccc--hhhhhhh-HHHHH--HHHHHHH-HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555442 2222222 22222 2222221 12222221100 11 12355667777788888888888888
Q ss_pred HHHhC
Q 047659 273 LMMEM 277 (619)
Q Consensus 273 ~m~~~ 277 (619)
.....
T Consensus 234 ~al~~ 238 (259)
T d1xnfa_ 234 LAVAN 238 (259)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 87765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=2.1e-11 Score=114.30 Aligned_cols=261 Identities=7% Similarity=-0.043 Sum_probs=179.8
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHH----------ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLL----------QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
.+..++|+++++.+.. |.+..+|.....++. ..|++++|+..+++++..+|++..
T Consensus 42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~------------- 108 (334)
T d1dcea1 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG------------- 108 (334)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-------------
T ss_pred ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH-------------
Confidence 4445899999998887 777777755444433 334578888899999888888776
Q ss_pred ccHHHHHHHHHHcC--ChhhHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHH
Q 047659 113 CDYSFLIENYVRIG--KIDESVEIFAYMSDMGIYLSPDLV-QRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMN 186 (619)
Q Consensus 113 ~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~ 186 (619)
+|..++.++...+ ++++|+..++++++..+. +...+ ......+...+.+++|+..++.+++.+| +. |..+..
T Consensus 109 -~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~ 186 (334)
T d1dcea1 109 -TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (334)
T ss_dssp -HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred -HHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666766666655 478899999998887554 55555 4455677778888999999998888888 33 778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 047659 187 GLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEK 266 (619)
Q Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 266 (619)
++...|++++|...+....+.. |+ .......+...+..+++...+.......+ ++...+..+...+...+++.+
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHH
Confidence 8888888887766555544431 11 11233344556777788888887776533 345556666777777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047659 267 AFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 267 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 328 (619)
|...+.+....... +..++..+..++...|+.++|.+.++.+.+.++. +...|..+...+
T Consensus 261 a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~ 320 (334)
T d1dcea1 261 SCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKF 320 (334)
T ss_dssp HHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHH
Confidence 88888877765322 4566777777788888888888888888776321 344555554433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=1.5e-09 Score=99.94 Aligned_cols=216 Identities=9% Similarity=-0.031 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHH--------------HcCChhhHHHHHHHHHhCCCCC
Q 047659 80 RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYV--------------RIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.+.+..+|++++...|..++ +|..-+..+. ..+..++|..+|++.++..++.
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~--------------lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~ 97 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPD--------------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 97 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCC
Confidence 34577789999998887776 5554444332 2334578888999988764555
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
+...|...+..+.+.|+++.|..+|+++++..| +. |...+..+.+.|+++.|.++|..+++.+ +.+...|.....
T Consensus 98 ~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~ 176 (308)
T d2onda1 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 176 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 777888888888888999999999998888776 32 6777777778888888888888887765 344444444333
Q ss_pred H-HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcC
Q 047659 222 R-LCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD-LVPD--LIIYSILIDGLFKAG 297 (619)
Q Consensus 222 ~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~ 297 (619)
. +...|+.+.|..+|+.+.... +.+...|...+..+...|+++.|..+|++..... ..|+ ...|...+..-...|
T Consensus 177 ~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G 255 (308)
T d2onda1 177 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcC
Confidence 3 234567777888888777653 2356677777777777888888888888776653 2332 346666676666777
Q ss_pred CHHHHHHHHHHHHH
Q 047659 298 RLKEGNELLLTALD 311 (619)
Q Consensus 298 ~~~~a~~~~~~~~~ 311 (619)
+.+.+.++++.+.+
T Consensus 256 ~~~~~~~~~~r~~~ 269 (308)
T d2onda1 256 DLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=4.9e-10 Score=103.25 Aligned_cols=214 Identities=10% Similarity=0.007 Sum_probs=170.5
Q ss_pred hHHHHHHHhhc--CCCCccHHHHHHHHHcc--------------CChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcc
Q 047659 50 PAIQFFKWTHN--CVSSPNIAQLIHVLLQS--------------DMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGC 113 (619)
Q Consensus 50 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (619)
.+..+|+.+.. |.++..|...+..+... +..++|..+|++++...+. ....
T Consensus 34 Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p-------------~~~~ 100 (308)
T d2onda1 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-------------KNML 100 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-------------TCHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCC-------------CCHH
Confidence 35667887777 88889998877765433 3457888888888864221 1222
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHH-HH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNG-LL 189 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~-~~ 189 (619)
.|...+..+.+.|+++.|..+|+++++..+......|...+..+.+.|+.+.|+++|.++.+..|.. |...+.. +.
T Consensus 101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~ 180 (308)
T d2onda1 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 7888899999999999999999999987665556689999999999999999999999999998833 4444433 33
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC-CCC--hhhHHHHHHHHHhcCCHHH
Q 047659 190 RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP-KPN--VVTFSTLINAFCKEAKLEK 266 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~ 266 (619)
..|+.+.|..+|+.+++.. +.+...|...+..+...|+++.|+.+|++.....+ .|+ ...|...+..-...|+.+.
T Consensus 181 ~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~ 259 (308)
T d2onda1 181 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred hccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 4689999999999999874 66788999999999999999999999999887643 332 3468888888888999999
Q ss_pred HHHHHHHHHhC
Q 047659 267 AFQLYNLMMEM 277 (619)
Q Consensus 267 a~~~~~~m~~~ 277 (619)
+.++++++.+.
T Consensus 260 ~~~~~~r~~~~ 270 (308)
T d2onda1 260 ILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988663
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=5.6e-10 Score=105.62 Aligned_cols=265 Identities=14% Similarity=-0.015 Sum_probs=168.8
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCC-----ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSS-----PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
....+...|++++|+++++.+.. |.+. .++..++.++...|++++|...|++++...+...+.. .
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------~ 89 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH--------Y 89 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------H
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH--------H
Confidence 34445789999999999999887 4433 3566788999999999999999999987544322110 0
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhC----CCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c-
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDM----GIYLS---PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C- 179 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~- 179 (619)
....+..+...+...|++..|...+...... ..... ...+..+...+...|+++.+...+.......+ .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 0115677888899999999999999887542 11111 23455677788889999999988888765443 1
Q ss_pred ----chHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC----ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--
Q 047659 180 ----VYEFLMNGLLRKGVIENAFHMHRQVIQRGF--VP----NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN-- 247 (619)
Q Consensus 180 ----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 247 (619)
.+......+...++...+...+........ .. ....+..+...+...|+++.|...++.........+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 249 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 249 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence 145555666677777777777666554310 11 112344445556666777777777766654322222
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 248 -VVTFSTLINAFCKEAKLEKAFQLYNLMME----MDLVPD-LIIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 248 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
...+..+..++...|++++|.+.++.... .+..|+ ..++..+..++...|++++|.+.+++..
T Consensus 250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22344556666777777777777766542 122222 2345555666666677766666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.7e-10 Score=102.29 Aligned_cols=196 Identities=11% Similarity=-0.145 Sum_probs=145.1
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+..+...+.+.|++++|+..|+.+.. |.++.+|..++.++.+.|++++|+..|++++..+|....
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----------- 106 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY----------- 106 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhh-----------
Confidence 3566677788999999999999999998 899999999999999999999999999999999988776
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccch-HHHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVY-EFLMNGLL 189 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l~~~~~ 189 (619)
++..++.+|...|++++|...|+..++..+. +......+...+.+.+..+.+..+...........+ ..++..+.
T Consensus 107 ---a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
T d1xnfa_ 107 ---AHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 182 (259)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred ---hHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHH
Confidence 8899999999999999999999999987654 566655566666666666666666666555554332 22333332
Q ss_pred hcCC----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 047659 190 RKGV----IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP 244 (619)
Q Consensus 190 ~~~~----~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 244 (619)
.... .+.+...+....... +....+|..+...+...|++++|.+.|+..+...|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 183 GNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 2222 222222222222111 12234677788999999999999999999987533
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=7.6e-09 Score=97.54 Aligned_cols=268 Identities=11% Similarity=0.002 Sum_probs=196.0
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c------c
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C------V 180 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~------~ 180 (619)
.....+..+...|++++|++++++.++..+..+ ..++..+..++...|++++|+..|+++.+..+ + .
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 445567888999999999999999988755433 24677788999999999999999999876433 1 1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC---hhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC----CChh
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQR----GFVPN---IVTCNKILKRLCINGQIGNASSLFDVLLLVGPK----PNVV 249 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~ 249 (619)
+..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+......... ....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 666777888999999999998887653 11111 234556677888999999999999888754322 2234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEM--DLVPD----LIIYSILIDGLFKAGRLKEGNELLLTALDRGLK---LDVVV 320 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 320 (619)
.+......+...+++..+...+...... ..... ...+..+...+...|+++.|...++........ .....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5566667788889999998888776542 11111 234556666788899999999999887654322 23455
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 321 FSSVMDAYVGIGDVGRAVQTYDRMLN----GGFLPN-VISYSILIKGLCQQGRLVEACGLFGQVLI 381 (619)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (619)
+..+...+...|++++|...+++... .+..|+ ...+..+...|...|++++|.+.+++...
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66788889999999999999988763 233333 34677778889999999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=1.1e-10 Score=109.21 Aligned_cols=274 Identities=8% Similarity=-0.076 Sum_probs=185.5
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
....+..++|+..+++++..+|+.+.++......+ .........+...|++++|+.+++.+++.+|+ ++..|..+
T Consensus 39 ~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l----~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~ 113 (334)
T d1dcea1 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVL----QHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHR 113 (334)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH----HHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHH----HHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHh
Confidence 33444568999999999999999876321000000 00111122344556688999999999988766 88889888
Q ss_pred HHHHHhcC--ChhHHHHHHHHHhhCCc-cc--h-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 047659 154 MSCLVDSN--SVGQYYKLCRAMRGKGF-CV--Y-EFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING 227 (619)
Q Consensus 154 ~~~~~~~~--~~~~A~~~~~~~~~~~~-~~--~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 227 (619)
..++...+ ++++|+..+.++.+.+| +. + ......+...+.++.|++.++.+++.+ +.+...|+.+..++...|
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHS
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 88877665 47899999999998887 33 3 345567778899999999999999886 677888999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047659 228 QIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLL 307 (619)
Q Consensus 228 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 307 (619)
++++|...+...... .|+ .......+...+..+++...+........ ++...+..+...+...++.++|...+.
T Consensus 193 ~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 193 PQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 998886665544332 111 12233344556666777777777766532 244455556666667777888888777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 047659 308 TALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPN-VISYSILIKG 362 (619)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~ 362 (619)
+....++. +...+..+...+...|++++|.+.+++..+. .|+ ...|..+...
T Consensus 267 ~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~ 319 (334)
T d1dcea1 267 ELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSK 319 (334)
T ss_dssp HHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHH
T ss_pred HHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHH
Confidence 77655322 4566677777788888888888888887774 343 3344444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=2.1e-09 Score=82.29 Aligned_cols=94 Identities=13% Similarity=-0.070 Sum_probs=47.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
.+..+...|++++|...|++++..+|..+. +|..++.+|...|++++|+..++.+++.+|. ++..
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 73 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHV--------------LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKG 73 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchh--------------hhhcccccccccccccccchhhhhHHHhccc-hhhH
Confidence 344444555555555555555555544444 4455555555555555555555555544333 4445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
|..++.++...|++++|+..|++..+..|
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 55555555555555555555555555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=9.1e-09 Score=78.56 Aligned_cols=90 Identities=10% Similarity=0.021 Sum_probs=62.1
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCH
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVI 194 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~ 194 (619)
-+..+.+.|++++|+.+|+++++..|. ++..|..++.+|...|++++|+..+.++++.+| ++ |..+..++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 455666677777777777777766544 666777777777777777777777777777666 32 66777777777777
Q ss_pred HHHHHHHHHHHHCC
Q 047659 195 ENAFHMHRQVIQRG 208 (619)
Q Consensus 195 ~~A~~~~~~~~~~~ 208 (619)
++|+..++..++..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1e-08 Score=86.29 Aligned_cols=90 Identities=10% Similarity=-0.112 Sum_probs=78.6
Q ss_pred HHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHH
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYS 116 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (619)
.-...+...|++++|++.|+.+. ++++.+|..++.++...|++++|+..|+++++.+|.... +|.
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~--------------a~~ 74 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV--------------AYF 74 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh--------------hHH
Confidence 33455678999999999999876 677888999999999999999999999999999888777 889
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.++.+|.+.|++++|+..|++.+..
T Consensus 75 ~~g~~~~~~g~~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 75 QRGMLYYQTEKYDLAIKDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.3e-08 Score=82.88 Aligned_cols=93 Identities=11% Similarity=0.086 Sum_probs=48.0
Q ss_pred HHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcc
Q 047659 36 NAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGC 113 (619)
Q Consensus 36 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (619)
......+.+.|++++|+..|+.+.. |.+...|..++.++...|++++|...|+++++.+|....
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~-------------- 79 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK-------------- 79 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchH--------------
Confidence 3344444555555555555555554 455555555555555555555555555555555544443
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
+|..++.++...|++++|...+++.....
T Consensus 80 a~~~~g~~~~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 80 GYYRRAASNMALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555555555555555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2.6e-08 Score=81.06 Aligned_cols=97 Identities=5% Similarity=-0.105 Sum_probs=84.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
+...+..+.+.|++++|...|++++..+|.... .|..++.+|...|++++|++.|+.+++.++. +
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~ 77 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAI--------------YYGNRSLAYLRTECYGYALGDATRAIELDKK-Y 77 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhh--------------hhhhhHHHHHhccccchHHHHHHHHHHHccc-c
Confidence 345677888999999999999999998888776 8889999999999999999999999887655 7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..+|..++.++...|++++|+..++++....|
T Consensus 78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 78 IKGYYRRAASNMALGKFRAALRDYETVVKVKP 109 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999999888877
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=1e-08 Score=87.57 Aligned_cols=102 Identities=9% Similarity=0.008 Sum_probs=87.4
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
|+...+...+..+.+.|++++|+..|++++..+|.++. +|..++.+|.+.|++++|+..|+.+++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~--------------~~~~lg~~y~~~~~~~~Ai~~~~~al~l 67 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV--------------YYTNRALCYLKMQQPEQALADCRRALEL 67 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHhHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 55666778888999999999999999999998888776 8888999999999999999999999887
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.|. ++.+|..++.+|...|++++|+..|+++.+..|
T Consensus 68 ~p~-~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 68 DGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 654 788888999999999999999999988877655
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.80 E-value=1.9e-08 Score=75.98 Aligned_cols=93 Identities=10% Similarity=-0.057 Sum_probs=53.4
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.+...+..+.+.|++++|+..|++++..+|..+. +|..++.++.+.|++++|+..|+++++.+|.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 82 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE--------------AWRSLGLTQAENEKDGLAIIALNHARMLDPK- 82 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccch--------------hhhhhhhhhhhhhhHHHhhcccccccccccc-
Confidence 3444555555566666666666666665555544 5555556666666666666666665555433
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
++.+|..++.+|...|++++|++.+++.
T Consensus 83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 83 DIAVHAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555666666666666665555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=2.2e-07 Score=77.88 Aligned_cols=119 Identities=6% Similarity=-0.117 Sum_probs=94.4
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE 195 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~ 195 (619)
+..+...|+++.|++.|+.+ .+|++.+|..++.+|...|++++|++.|+++++.+| .+ |..+..++.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 66788999999999999875 456889999999999999999999999999999999 33 899999999999999
Q ss_pred HHHHHHHHHHHCCCCCC----------------hhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 196 NAFHMHRQVIQRGFVPN----------------IVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
+|++.|++.+... +.+ ..++..+..++.+.|++++|.+.++.....
T Consensus 88 ~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999987642 111 133444555566666666666666666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.73 E-value=1.9e-08 Score=75.96 Aligned_cols=92 Identities=9% Similarity=-0.066 Sum_probs=85.1
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
........+.++|++++|+..|+.+.. |.++.+|..++.++.+.|++++|+..|+++++.+|....
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------------ 85 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA------------ 85 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccccc------------
Confidence 445677788999999999999999988 889999999999999999999999999999999998877
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
++..++..|...|++++|++.+++.+
T Consensus 86 --a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 86 --VHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 89999999999999999999999874
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=1.9e-07 Score=84.51 Aligned_cols=176 Identities=10% Similarity=-0.083 Sum_probs=108.9
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC
Q 047659 47 NPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG 126 (619)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 126 (619)
++++|.++|..+ +.++...|++++|...|+++........+. +....+|..++.+|.+.|
T Consensus 32 ~~~~Aa~~y~~a------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~--------~~~a~~~~~~g~~y~~~~ 91 (290)
T d1qqea_ 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE--------DEAGNTYVEAYKCFKSGG 91 (290)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHH------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHHHHhC
Confidence 345666665544 578889999999999999998753211110 000117888899999999
Q ss_pred ChhhHHHHHHHHHhCCCCC-C----HHhHHHHHHHHH-hcCChhHHHHHHHHHhhCCc---------cchHHHHHHHHhc
Q 047659 127 KIDESVEIFAYMSDMGIYL-S----PDLVQRLMSCLV-DSNSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRK 191 (619)
Q Consensus 127 ~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~ 191 (619)
++++|++.+++..+..... + ..++..++..|. ..|++++|++.|.++.+... .++..++..+...
T Consensus 92 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~ 171 (290)
T d1qqea_ 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHc
Confidence 9999999999876532111 1 334556666664 35888888888877654211 1156666677777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 192 GVIENAFHMHRQVIQRGFVPNI------VTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 192 ~~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
|++++|.+.++++......... ..+...+..+...|+++.|...+++..+.
T Consensus 172 g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred ChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777777776665311111 11223334445566666676666666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.69 E-value=3.4e-06 Score=75.00 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=40.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHc----cCChhHHHHHHHHHHHh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQ----SDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 93 (619)
+|+.+..+...+.+++++++|+++|+.+.+..+.++...++.++.. ..++..|...++.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~ 67 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 67 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence 3556666666666667777777777766655666666666666654 44666666666665553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=2.6e-07 Score=83.63 Aligned_cols=199 Identities=7% Similarity=-0.087 Sum_probs=138.3
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc----CCC----CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHH
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN----CVS----SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLF 104 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (619)
+.+......+...|++++|++.|..+.. ..+ ..++..++.++.+.|++++|...+++++...+...+..
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~--- 114 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR--- 114 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch---
Confidence 3566666777789999999999999887 222 24678889999999999999999999987544321110
Q ss_pred HhhcCCCcccHHHHHHHHHH-cCChhhHHHHHHHHHhCC----CCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 105 RDSLGDFGCDYSFLIENYVR-IGKIDESVEIFAYMSDMG----IYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.....+..++..|.. .|++++|++.++++.+.. ..+ -..++..++.++...|++++|++.|+++....+
T Consensus 115 -----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~ 189 (290)
T d1qqea_ 115 -----RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (290)
T ss_dssp -----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred -----hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence 001166777777755 599999999999986431 111 134578899999999999999999999887665
Q ss_pred cc----------hHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---hhhHHHHHHHHHh--cCCcchHHHHHHHH
Q 047659 179 CV----------YEFLMNGLLRKGVIENAFHMHRQVIQRGFV-PN---IVTCNKILKRLCI--NGQIGNASSLFDVL 239 (619)
Q Consensus 179 ~~----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~---~~~~~~ll~~~~~--~~~~~~A~~~~~~~ 239 (619)
.. +...+.++...|+++.|...++...+.... ++ ......++.++-. .+.+++|+..|+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred cchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11 345666777899999999999998876411 11 1233445555433 23355666655544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=1.3e-08 Score=86.88 Aligned_cols=97 Identities=9% Similarity=0.015 Sum_probs=90.1
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+.+.+......+.+.|++++|+..|+.+.. |.++..|..++.++.+.|++++|+..|+++++.+|....
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~--------- 73 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK--------- 73 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHH---------
Confidence 456788888999999999999999999887 999999999999999999999999999999999888777
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
+|..++.+|.+.|++++|+..|+.+++.
T Consensus 74 -----a~~~lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 74 -----AHFFLGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999998764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.2e-07 Score=72.17 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=43.6
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCC---hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM---RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.++..+...+++++|.+.|+.+.. |.++.++..++.++.+.++ +++|+.+|++++..+|.+...-
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~---------- 73 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD---------- 73 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHH----------
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHH----------
Confidence 344444445555555555555544 4444555555555544332 2235555555544433321100
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
++..++.+|.+.|++++|++.|+++++.
T Consensus 74 --~~~~Lg~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 74 --YVFYLAVGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444555555555555555555555554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.55 E-value=3.2e-05 Score=68.41 Aligned_cols=140 Identities=9% Similarity=-0.020 Sum_probs=73.0
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH----cCChhhHHHHHHHH
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR----IGKIDESVEIFAYM 138 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 138 (619)
+|.++..++..+.+.|++++|.+.|+++.+.+ +.+ ++..|+..|.. ..++..|...++..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~~--------------A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a 64 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENS--------------GCFNLGVLYYQGQGVEKNLKKAASFYAKA 64 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHH--------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHH--------------HHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence 34566666767777777777777777775532 222 45556666665 44666666666666
Q ss_pred HhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 047659 139 SDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGVIENAFHMHRQVIQRGF 209 (619)
Q Consensus 139 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 209 (619)
...+ ++.....+...+.. ....+.|...++...+.++ .....+...+.. ......+...+......+
T Consensus 65 ~~~~---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~- 140 (265)
T d1ouva_ 65 CDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 140 (265)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred cccc---ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc-
Confidence 6543 34444444444432 3445556666666655555 223333333321 333444455554444432
Q ss_pred CCChhhHHHHHHHHH
Q 047659 210 VPNIVTCNKILKRLC 224 (619)
Q Consensus 210 ~~~~~~~~~ll~~~~ 224 (619)
+...+..+...+.
T Consensus 141 --~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 141 --DGDGCTILGSLYD 153 (265)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred --ccchhhhhhhhhc
Confidence 3444444444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.3e-07 Score=72.09 Aligned_cols=96 Identities=11% Similarity=-0.034 Sum_probs=65.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCC---hhhHHHHHHHHHhCCCCC
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGK---IDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~ 145 (619)
.++..+...+++++|++.|++++..+|.+++ ++..++.++.+.++ +++|+.+|++++..++.|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~--------------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~ 69 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKS--------------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH--------------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc
Confidence 4556666777777777777777777777666 66777777765443 345777777777655443
Q ss_pred C-HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 146 S-PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 146 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+ ..++..++.+|.+.|++++|++.|+++++.+|
T Consensus 70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCc
Confidence 3 24667777777777777777777777777666
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=5.3e-07 Score=69.70 Aligned_cols=107 Identities=10% Similarity=0.155 Sum_probs=87.4
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
...+...+.+.|++++|+..|+.++. |.+..++..++.++.+.|++++|...+++++..+|........+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a------- 79 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA------- 79 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH-------
Confidence 34566778899999999999999998 888999999999999999999999999999998776655321111
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV 150 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 150 (619)
.+|..++..+...+++++|++.|+..+... +++...
T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~ 115 (128)
T d1elra_ 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVL 115 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCHHHH
Confidence 167788888999999999999999987743 344443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=9.6e-07 Score=72.18 Aligned_cols=64 Identities=6% Similarity=-0.105 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+|..++.+|.+.|++++|+..++.+++.+|. ++.++..++.+|...|++++|+..|+.+++.+|
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 5566666677777777777777777666544 666677777777777777777777777766666
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=6.4e-07 Score=69.21 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=55.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
+..++..+.+.|++++|...|++++..+|.+.. ++..++.+|.+.|++++|+..++.+++.++. +
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~ 71 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMT--------------YITNQAAVYFEKGDYNKCRELCEKAIEVGRE-N 71 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--------------HHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-c
Confidence 345666777777777777777777777666555 6667777777777777777777776654322 2
Q ss_pred HH-------hHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 147 PD-------LVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 147 ~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+. ++..+...+...+++++|++.|++..
T Consensus 72 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22 33334444444445555555544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.5e-07 Score=92.36 Aligned_cols=223 Identities=10% Similarity=-0.055 Sum_probs=133.2
Q ss_pred hHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCC
Q 047659 50 PAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGK 127 (619)
Q Consensus 50 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 127 (619)
+|.+.|+++.. |....++..++.++...|++++| |++++..+|..... +.... ..-...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~--------------~~~e~--~Lw~~~ 64 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALD--------------KKVEQ--DLWNHA 64 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHH--------------HTHHH--HHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHH--------------HhHHH--HHHHHH
Confidence 68899999887 88889999999999999999876 88888877654331 11111 111122
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHH--HHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHH
Q 047659 128 IDESVEIFAYMSDMGIYLSPDLVQR--LMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 128 ~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
+..+++.++...+....++..-... ........+.++.|+..+.......+ + .+..+...+.+.|+.+.|...+.
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CC
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 4567777777765443333222211 12223345666777776666665555 2 27777778888888888888777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD 282 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 282 (619)
...... ...++..+...+...|++++|...|.+..+..+. +...|+.+...+...|+..+|...|.+..... +|-
T Consensus 145 ~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~ 219 (497)
T d1ya0a1 145 SSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPF 219 (497)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCC
T ss_pred HHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC
Confidence 766542 2356777888888889999999999988876433 56788889999989999999999988888764 456
Q ss_pred HHHHHHHHHHHHhc
Q 047659 283 LIIYSILIDGLFKA 296 (619)
Q Consensus 283 ~~~~~~ll~~~~~~ 296 (619)
..++..|...+.+.
T Consensus 220 ~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 220 PAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=3.7e-06 Score=68.57 Aligned_cols=139 Identities=12% Similarity=-0.019 Sum_probs=98.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
+...+..+.+.|++++|+..|++++...+.... . ...-......+ .
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~-------------~~~~~~~~~~~-------~ 61 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------F-------------SNEEAQKAQAL-------R 61 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------C-------------CSHHHHHHHHH-------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------c-------------chHHHhhhchh-------H
Confidence 445677888999999999999999987654322 0 00111111111 1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRL 223 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 223 (619)
..++..++.+|.+.|++++|+..++.+++.+| ++ +..++.++...|+++.|...|+.+++.. +.+..+...+-.+.
T Consensus 62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 23577789999999999999999999999999 44 9999999999999999999999999985 44666665555554
Q ss_pred HhcCCcch-----HHHHHHHHH
Q 047659 224 CINGQIGN-----ASSLFDVLL 240 (619)
Q Consensus 224 ~~~~~~~~-----A~~~~~~~~ 240 (619)
.+.+.... ...+|+.+.
T Consensus 141 ~~~~~~~~~e~~~~~~~f~~~~ 162 (170)
T d1p5qa1 141 QRIRRQLAREKKLYANMFERLA 162 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 43333222 234555554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.37 E-value=5.8e-06 Score=67.27 Aligned_cols=64 Identities=9% Similarity=-0.035 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+|..++.+|.+.|++++|+..++.+++.+|. ++.++..++.++...|++++|+..|.++++.+|
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P 129 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4555555666666666666666666555433 555566666666666666666666666666555
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.36 E-value=3.6e-06 Score=67.21 Aligned_cols=64 Identities=5% Similarity=-0.127 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+|..++.+|.+.|++++|++.++.+++.+|. ++.+|..++.++...|++++|+..|+++++.+|
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4556666666666666666666666665443 566666666666666666666666666666665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.33 E-value=1.1e-06 Score=71.92 Aligned_cols=64 Identities=5% Similarity=-0.114 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+..++.+|.+.|++++|+..++.+++..|. ++.+|..++.+|...|++++|+..|+++++..|
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 5667777778888888888888888776654 777777788888888888888888888777777
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.27 E-value=0.00037 Score=62.52 Aligned_cols=280 Identities=13% Similarity=0.060 Sum_probs=129.6
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
+......++..+.+.|.++.|..+|..+- -|..++..+.+.+++..|.+++.+.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------------------d~~rl~~~~v~l~~~~~avd~~~k~---- 66 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------------------NFGRLASTLVHLGEYQAAVDGARKA---- 66 (336)
T ss_dssp ----------------CTTTHHHHHHHTT----------------------CHHHHHHHHHTTTCHHHHHHHHHHH----
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------------------CHHHHHHHHHhhccHHHHHHHHHHc----
Confidence 33344455666667777777777765442 4556666777777777777766544
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR 222 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 222 (619)
-++.+|..+...+.+......|.- ........++....++..|-..|.++....+++...... ..+...++.++..
T Consensus 67 --~~~~~~k~~~~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~l 142 (336)
T d1b89a_ 67 --NSTRTWKEVCFACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 142 (336)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHH
Confidence 156677777777766655433211 111111111225566677777777777777777665442 4556667777777
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHH
Q 047659 223 LCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM--------DLVPDLIIYSILIDGLF 294 (619)
Q Consensus 223 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~~ll~~~~ 294 (619)
|++.+. .++.+.+...+ +......++..|-+.+-++++.-++..+... ...++..-....+..+.
T Consensus 143 yak~~~----~kl~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~ 215 (336)
T d1b89a_ 143 YSKFKP----QKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 215 (336)
T ss_dssp HHTTCH----HHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHH
T ss_pred HHHhCh----HHHHHHHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHH
Confidence 776532 23333333211 1112223344444444444444443333210 00122222333334444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047659 295 KAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACG 374 (619)
Q Consensus 295 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 374 (619)
+..+.+...+++....+. ++...+.++......-+..+ ++..+-+.++......
T Consensus 216 k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r----------------------~V~~~~k~~~l~li~p 269 (336)
T d1b89a_ 216 KVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTR----------------------AVNYFSKVKQLPLVKP 269 (336)
T ss_dssp HCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHH----------------------HHHHHHHTTCTTTTHH
T ss_pred ccCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHH----------------------HHHHHHhcCCcHHHHH
Confidence 444444444444333332 11122333333222222222 3333444555556666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 047659 375 LFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGF 408 (619)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 408 (619)
.++.....+ +....+++...|...++++.-.
T Consensus 270 ~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 270 YLRSVQNHN---NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp HHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcC---hHHHHHHHHHHHhCcchhHHHH
Confidence 666655443 3356777777777777765433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.23 E-value=7.2e-06 Score=66.70 Aligned_cols=140 Identities=11% Similarity=0.002 Sum_probs=98.6
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.+...+..+.+.|++.+|...|++++...+.... ...+ -....+.+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~--------------------------~~~~-~~~~~~~~------- 62 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG--------------------------LSEK-ESKASESF------- 62 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--------------------------CCHH-HHHHHHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------------------------cchh-hhhhcchh-------
Confidence 3456788888999999999999998875443221 0000 11111111
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR 222 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 222 (619)
...++..+..+|.+.|++++|+..++.+++.+| ++ +..+..++...|++++|...|..+++.. +.+..+...+-..
T Consensus 63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 134677789999999999999999999999998 33 9999999999999999999999999985 5566666665555
Q ss_pred HHhcCCc-chHHHHHHHHH
Q 047659 223 LCINGQI-GNASSLFDVLL 240 (619)
Q Consensus 223 ~~~~~~~-~~A~~~~~~~~ 240 (619)
....+.. +...+++..|.
T Consensus 142 ~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 5444433 23445544443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.21 E-value=1.1e-05 Score=65.94 Aligned_cols=27 Identities=4% Similarity=-0.101 Sum_probs=21.7
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN 60 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~ 60 (619)
.+......+...|++++|.+.|+.+..
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~ 39 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALR 39 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445556677889999999999998887
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.17 E-value=8.6e-06 Score=64.95 Aligned_cols=122 Identities=11% Similarity=-0.057 Sum_probs=89.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
+...+..+.+.|++++|...|++++...+.... ..+......... ..
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~---------------------------~~~~~~~~~~~~------~~ 66 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE---------------------------WDDQILLDKKKN------IE 66 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT---------------------------CCCHHHHHHHHH------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh---------------------------hhhHHHHHhhhh------HH
Confidence 344667788899999999999999876443221 001111111111 12
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR 222 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 222 (619)
..++..++.+|.+.|++++|++.+..+++.+| ++ |..++.++...|+++.|+..|+..++.. |.+..+...+-.+
T Consensus 67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 144 (153)
T d2fbna1 67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34678899999999999999999999999999 44 9999999999999999999999999985 4456555554433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=1.1e-05 Score=65.76 Aligned_cols=125 Identities=8% Similarity=0.003 Sum_probs=91.9
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
...+..+...|++++|...|++++...+.... ...... ..... +...
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~-------------------------~~~~~~-------~~~~~-~~~~ 77 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA-------------------------AAEDAD-------GAKLQ-PVAL 77 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-------------------------HSCHHH-------HGGGH-HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh-------------------------hhhhHH-------HHHhC-hhhH
Confidence 45677788999999999999998864221110 011111 11110 1145
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLC 224 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 224 (619)
..+..+..++.+.|++++|+..+.++++.+| ++ |..+..++...|+++.|++.|..+++.. +.+..+...+..+..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 6778889999999999999999999999999 33 9999999999999999999999999985 556666666665554
Q ss_pred hc
Q 047659 225 IN 226 (619)
Q Consensus 225 ~~ 226 (619)
+.
T Consensus 157 ~l 158 (169)
T d1ihga1 157 KI 158 (169)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.16 E-value=6.6e-07 Score=78.53 Aligned_cols=124 Identities=10% Similarity=-0.052 Sum_probs=68.2
Q ss_pred HHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHH
Q 047659 41 NLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFL 118 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (619)
.++++|++++|+..++.... |.+...+..++.++...|++++|...|+++++.+|.... .+..+
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~--------------~~~~l 70 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP--------------GASQL 70 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH--------------HHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH--------------HHHHH
Confidence 45667777777777777665 666677777777777777777777777777776665544 33444
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
...+...+..+++..-.......+.+++...+...+..+...|+.++|.+.++++.+..|
T Consensus 71 ~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 444433333333222111111111111222333344555566666666666666655444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=0.0024 Score=57.09 Aligned_cols=292 Identities=10% Similarity=0.069 Sum_probs=145.4
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047659 211 PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILI 290 (619)
Q Consensus 211 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 290 (619)
||..-...+.+.|.+.|.++.|..++..+. -|..++..+.+.++++.|.+.+.... +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 455555566677777788888877777552 25666777777777777777765442 556777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047659 291 DGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLV 370 (619)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 370 (619)
..+.+......+ .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+ .+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~ 149 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQ 149 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HH
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hH
Confidence 777766554332 2222333345555666777777777777777777766543 2446666777777776654 33
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCC
Q 047659 371 EACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLI 450 (619)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~ 450 (619)
+..+.+.... +......++..|.+.+-++++.-++..+... + .|.. .+... .
T Consensus 150 kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~----~-------------~A~~---~~i~~--~ 201 (336)
T d1b89a_ 150 KMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY----D-------------NAII---TMMNH--P 201 (336)
T ss_dssp HHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH----H-------------HHHH---HHHHS--T
T ss_pred HHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCCH----H-------------HHHH---HHHHc--c
Confidence 3333332221 1122344566666667666666665554321 1 1111 11111 1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047659 451 PNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAII 530 (619)
Q Consensus 451 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 530 (619)
++..-....++.+.+..+++...++.....+. .| ...+.++......-+. ..++
T Consensus 202 ~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~----------------------~r~V 255 (336)
T d1b89a_ 202 TDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDH----------------------TRAV 255 (336)
T ss_dssp TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCH----------------------HHHH
T ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCH----------------------HHHH
Confidence 11122223333344444443333333322221 11 1122222222222222 2344
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047659 531 HGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLF 581 (619)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (619)
..+.+.+++.....+++...+.| +..+.+++.+.|...+|++.-.+.+
T Consensus 256 ~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 256 NYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 45556666666777777766554 4568888888899888875544433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.14 E-value=4.6e-06 Score=65.74 Aligned_cols=90 Identities=4% Similarity=-0.107 Sum_probs=67.3
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHc----------CChhhHHHHHHHHHhCCC
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRI----------GKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 143 (619)
+-+.+.+++|+..|++++..+|.+++ ++..++.++... +.+++|+..|+++++.+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~--------------~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P 72 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDAD--------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 72 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchH--------------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 44667799999999999999999988 777888777754 445789999999988766
Q ss_pred CCCHHhHHHHHHHHHhcCC-----------hhHHHHHHHHHhhCCc
Q 047659 144 YLSPDLVQRLMSCLVDSNS-----------VGQYYKLCRAMRGKGF 178 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~ 178 (619)
. ++.+|..++.+|...|+ +++|.+.|+++++..|
T Consensus 73 ~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 73 K-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp T-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred h-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 5 78888888888876553 3445555555544444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.1e-06 Score=85.85 Aligned_cols=223 Identities=6% Similarity=-0.116 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 047659 82 VASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN 161 (619)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 161 (619)
+|.+.|++++...|+..+ ++..++.+|..+|++++| |++++..++. .....+ .-..+. ..
T Consensus 4 eA~q~~~qA~~l~p~~a~--------------a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~-~e~~Lw-~~ 63 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTD--------------SKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKK-VEQDLW-NH 63 (497)
T ss_dssp HHHHHHHHHHHHHGGGTC--------------SSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHT-HHHHHH-HH
T ss_pred HHHHHHHHHHHcCCCCHH--------------HHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHh-HHHHHH-HH
Confidence 688999999998777665 777888888888988876 7777654321 111111 111111 12
Q ss_pred ChhHHHHHHHHHhhCCc--cc--hHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047659 162 SVGQYYKLCRAMRGKGF--CV--YEFLMNG--LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSL 235 (619)
Q Consensus 162 ~~~~A~~~~~~~~~~~~--~~--~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 235 (619)
.+..+++.++...+... +. ....... ....+.++.|+..+....+.. +++...+..+...+.+.|+.+.|...
T Consensus 64 ~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 64 AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp HTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------
T ss_pred HHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 35567777877766544 22 2222222 223455666666555554443 45566777888888889999999888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047659 236 FDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315 (619)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 315 (619)
+...... . ...++..+...+...|++++|...|++..+.... +...|+.+...+...|+..+|...|.+..... +
T Consensus 143 ~~~al~~--~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~ 217 (497)
T d1ya0a1 143 QSSSCSY--I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-F 217 (497)
T ss_dssp CCHHHHH--H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-B
T ss_pred HHHHhCC--C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-C
Confidence 7776542 1 1356777888999999999999999999886433 56889999999999999999999999998765 4
Q ss_pred CCHHHHHHHHHHHHc
Q 047659 316 LDVVVFSSVMDAYVG 330 (619)
Q Consensus 316 ~~~~~~~~ll~~~~~ 330 (619)
|-..++..|...+.+
T Consensus 218 ~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 218 PFPAASTNLQKALSK 232 (497)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 577788888776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.02 E-value=2.7e-06 Score=67.14 Aligned_cols=112 Identities=14% Similarity=0.030 Sum_probs=84.8
Q ss_pred HccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHcc----------CChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 43 IKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQS----------DMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
-+.+.+++|++.|+.+.. |.++.++..++.++... +.+++|+..|+++++.+|...+
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~----------- 76 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE----------- 76 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----------
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhH-----------
Confidence 345668999999999988 99999999999998754 4567899999999999998887
Q ss_pred CcccHHHHHHHHHHcCC-----------hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 111 FGCDYSFLIENYVRIGK-----------IDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
+|..++.+|...|+ ++.|.+.|+..++..|. +...+..+... ..|.+++.++.+.
T Consensus 77 ---a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~-~~~~~~~L~~~-------~ka~~~~~e~~k~ 142 (145)
T d1zu2a1 77 ---AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSLEMT-------AKAPQLHAEAYKQ 142 (145)
T ss_dssp ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-------HTHHHHHHHHHHS
T ss_pred ---HHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC-HHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 78888888887654 68899999999986554 44444444433 2455555555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.92 E-value=4.4e-05 Score=62.20 Aligned_cols=123 Identities=8% Similarity=-0.076 Sum_probs=69.3
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.....+..+...|++++|...|.+++...++..-. .+ +..+-+...-..+.. .
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------~~-----------------~~~~w~~~~r~~l~~----~ 65 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD------DL-----------------RDFQFVEPFATALVE----D 65 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------GG-----------------TTSTTHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc------cC-----------------cchHHHHHHHHHHHH----H
Confidence 34567788899999999999999999876544210 00 000011111111111 0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhh
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQ-----RGFVPNIVT 215 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 215 (619)
....+..++..+.+.|++++|+..++++++.+| +. |..++.++...|+.++|++.|+++.+ .|+.|...+
T Consensus 66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 233455555556666666666666666666555 22 66666666666666666666655533 477777654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.90 E-value=1e-05 Score=70.82 Aligned_cols=120 Identities=10% Similarity=-0.092 Sum_probs=70.0
Q ss_pred HHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 047659 73 VLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQR 152 (619)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 152 (619)
-.++.|++++|+..+++.++.+|.+.+ .+..++..|+..|++++|...|+...+..|. +...+..
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~--------------ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~ 69 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDAS--------------LRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQ 69 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 355678888888888888888777766 7778888888888888888888888776543 4455555
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC-Cccc---hHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGK-GFCV---YEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
+..++...+..+++.......... .|+. +...+..+...|+.++|.+.++++.+.
T Consensus 70 l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 70 LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 554443333333222211111111 1111 223334445556666666666655554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=3.2e-05 Score=55.45 Aligned_cols=70 Identities=9% Similarity=-0.085 Sum_probs=61.9
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC-------CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 30 LQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVS-------SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
+++++...+...+.+.|++++|+..|+.+.. +.+ ..++..++.++.+.|++++|+..++++++.+|++..
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~ 81 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence 5888999999999999999999999999876 222 245678999999999999999999999999998877
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=3.6e-05 Score=55.17 Aligned_cols=84 Identities=10% Similarity=-0.012 Sum_probs=65.4
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
+++....++.++.+.|++++|...|++++...+..... .+....++..|+.+|.+.|++++|+..++++++..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~-------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc-------CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34566789999999999999999999999876543220 01112278899999999999999999999999987
Q ss_pred CCCCHHhHHHHH
Q 047659 143 IYLSPDLVQRLM 154 (619)
Q Consensus 143 ~~~~~~~~~~l~ 154 (619)
|. ++.+++.+.
T Consensus 77 P~-~~~a~~Nl~ 87 (95)
T d1tjca_ 77 PE-HQRANGNLK 87 (95)
T ss_dssp TT-CHHHHHHHH
T ss_pred cC-CHHHHHHHH
Confidence 65 677766654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.55 E-value=0.00043 Score=54.89 Aligned_cols=104 Identities=11% Similarity=-0.109 Sum_probs=72.2
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC-----CCC
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG-----IYL 145 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~ 145 (619)
+..+.+.|++++|+..|++++...+..++.... ...+.....|..++.+|.+.|++++|...++..+... ..+
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~--~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF--DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC--CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc--ccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence 667788899999999999999987765431000 0000001168889999999999999999999887531 111
Q ss_pred C-----HHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 146 S-----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 146 ~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
+ ..+++.+..+|...|++++|+..|+++++.
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 224666778888888888888888876653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.39 E-value=0.00036 Score=55.39 Aligned_cols=102 Identities=15% Similarity=0.008 Sum_probs=75.0
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc--CCCC------------ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN--CVSS------------PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR 102 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 102 (619)
.......+.|++++|++.|+.+.+ +..+ ..|..++.++...|++++|...+++++...+......
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~- 92 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN- 92 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc-
Confidence 335567788999999999999987 3322 3567899999999999999999999997644221100
Q ss_pred HHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 103 LFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
....+....++..++.+|...|++++|+..|++.++.
T Consensus 93 --~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 93 --QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp --STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000001116788999999999999999999998753
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.82 E-value=0.009 Score=45.30 Aligned_cols=80 Identities=8% Similarity=-0.054 Sum_probs=36.3
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCCHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGVIEN 196 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~ 196 (619)
.+.++|...+++..+.+ ++.+...+...|.. ..+..+|+++|++..+.+. +....+...|.. ..+.++
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHH
Confidence 34444555555444432 33444444444432 2334455555555444443 223334444333 345555
Q ss_pred HHHHHHHHHHCC
Q 047659 197 AFHMHRQVIQRG 208 (619)
Q Consensus 197 A~~~~~~~~~~~ 208 (619)
|.++++...+.|
T Consensus 114 A~~~~~~Aa~~G 125 (133)
T d1klxa_ 114 AVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.58 E-value=0.024 Score=42.78 Aligned_cols=110 Identities=9% Similarity=0.023 Sum_probs=80.5
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCCHHHHHHHH
Q 047659 127 KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGVIENAFHMH 201 (619)
Q Consensus 127 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~ 201 (619)
|+++|+..|++..+.+ ++..+..+.. ....+.++|++++++..+.+. +....+...|.. ..+.++|.++|
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 6677888888877765 3333334432 345678899999999888776 446667777664 56789999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCC
Q 047659 202 RQVIQRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGP 244 (619)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~ 244 (619)
+...+.| ++.....|...|.. ..+.++|.++|+...+.|.
T Consensus 83 ~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 83 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999987 55566667666665 4678899999999988764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.59 Score=43.52 Aligned_cols=147 Identities=8% Similarity=-0.079 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 047659 261 EAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQT 340 (619)
Q Consensus 261 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 340 (619)
.+..+.+...+......+ .+.....-.+......+++..+...+..+... ........-=+..++...|+.+.|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 344455555555544432 23333333444445556666666666554322 111233334445555666666666666
Q ss_pred HHHHHhC------------CCC-----------CC-HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047659 341 YDRMLNG------------GFL-----------PN-VI---SYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSS 393 (619)
Q Consensus 341 ~~~~~~~------------~~~-----------~~-~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 393 (619)
|...... |.+ +. .. .-..-+..+...|....|...+..+... .+......
T Consensus 342 ~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~ 418 (450)
T d1qsaa1 342 LHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQ 418 (450)
T ss_dssp HHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHH
Confidence 6655432 000 00 00 0011234455666666666666665532 23444455
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 047659 394 LIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 394 ll~~~~~~~~~~~a~~~~~~ 413 (619)
+.....+.|.++.|+.....
T Consensus 419 la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 419 LARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHH
Confidence 55666666666666655444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.037 Score=40.25 Aligned_cols=95 Identities=6% Similarity=0.069 Sum_probs=62.5
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHcc---CChhHHHHHHHHHHHhcCCch-hHHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQS---DMRDVASHVFDKMVIQFGKTY-NFFRL 103 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~-~~~~~ 103 (619)
.+++++++..+=..+.+.++ ..++..+....+..+.+. ++.++|+.+|+.+...+|... +
T Consensus 11 ~pl~~~el~~~~~q~~~e~~------------~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd---- 74 (124)
T d2pqrb1 11 EPLYPQQLEILRQQVVSEGG------------PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRE---- 74 (124)
T ss_dssp SCCCHHHHHHHHHHHHHTTG------------GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH----
T ss_pred CCCCHHHHHHHHHHHHHHhC------------CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHH----
Confidence 34677777766555433321 122334445555555544 456789999999988766542 3
Q ss_pred HHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 104 FRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
.+..|+.+|.+.|+++.|...++.+++..|. +..+
T Consensus 75 ----------~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~-n~qA 109 (124)
T d2pqrb1 75 ----------CLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQV 109 (124)
T ss_dssp ----------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred ----------HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC-cHHH
Confidence 5677888899999999999999999987554 4443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=1.1 Score=41.42 Aligned_cols=332 Identities=5% Similarity=-0.065 Sum_probs=184.3
Q ss_pred HHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 36 NAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 36 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
...+..++++|+...+.++...+.+ .....|...-.+....+.... .-+...+..+|+.+-.- .+.
T Consensus 10 y~~a~~a~~~~~~~~~~~~~~~L~d-ypL~pYl~~~~l~~~~~~~~~--~~i~~Fl~~~p~~P~~~-----------~lr 75 (450)
T d1qsaa1 10 YAQIKQAWDNRQMDVVEQMMPGLKD-YPLYPYLEYRQITDDLMNQPA--VTVTNFVRANPTLPPAR-----------TLQ 75 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHSGGGTT-STTHHHHHHHHHHHTGGGCCH--HHHHHHHHHCTTCHHHH-----------HHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhhhcC-CCCHHHHHHHHHHhccccCCH--HHHHHHHHHCCCChhHH-----------HHH
Confidence 3455667889999999999888864 112334433333333222221 23456677777655321 133
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHH
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIE 195 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (619)
...+..+.+.++++..+..+. . .+.+...-...+.+..+.|+.+.|...+..+-..+. ...+
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-------------~~p~ 137 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSP----E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-------------SQPN 137 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC----S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-------------CCCT
T ss_pred HHHHHHHHhccCHHHHHHhcc----C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------------CCch
Confidence 445667778888776554432 2 223566666777888899999999888877655543 1222
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
....++....+.| ..+...+-.-+......|+...|..+...+ ...........+..... ...+.... .
T Consensus 138 ~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l----~~~~~~~~~a~~~l~~~---p~~~~~~~---~ 206 (450)
T d1qsaa1 138 ACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQM----PADYQTIASAIISLANN---PNTVLTFA---R 206 (450)
T ss_dssp HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTC----CGGGHHHHHHHHHHHHC---GGGHHHHH---H
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhC----ChhHHHHHHHHHHHHhC---hHhHHHHH---h
Confidence 2233444444444 344444444555566677777777766543 11122223333333222 22222222 1
Q ss_pred hCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHcCCCHHHHHHHHHHHHhCCC
Q 047659 276 EMDLVPDLIIYSILIDGLFK--AGRLKEGNELLLTALDRGLKLDVVVFSSVM----DAYVGIGDVGRAVQTYDRMLNGGF 349 (619)
Q Consensus 276 ~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~ 349 (619)
.. .++......+..++.+ ..+.+.+..++......... +..-+..+- ......+..+.+...+......+
T Consensus 207 ~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~- 282 (450)
T d1qsaa1 207 TT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS- 282 (450)
T ss_dssp HS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-
T ss_pred cC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc-
Confidence 11 1233333333333332 34677788888777654322 222222222 22234566677777777776653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047659 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIK 416 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 416 (619)
.+.....-.+......+++..+...+..+... ......-.--+.+++...|+.+.|...|..+..
T Consensus 283 -~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 283 -QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 34444444555566778899888888877533 222334445567888889999999999988764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.30 E-value=0.31 Score=35.23 Aligned_cols=65 Identities=12% Similarity=0.000 Sum_probs=44.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHhhCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 143 IYLSPDLVQRLMSCLVDSNSV---GQYYKLCRAMRGKGF----CVYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
+.+++.+....+.+++++.+. ++++.+++.+.+.+| |.+..+..+|.+.|++++|.+.++.+++.
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 445666777777777766543 467777777776665 22566677777777777777777777776
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.23 E-value=0.61 Score=33.34 Aligned_cols=68 Identities=12% Similarity=-0.020 Sum_probs=56.6
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047659 522 DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLE 590 (619)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 590 (619)
+...++..++....+|+-+.-.++++.+.+. -+|++...-.+..+|.+-|...++-+++.+.-+.|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3445677788888999999999999887775 4778999999999999999999999999999998864
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.41 E-value=0.89 Score=32.48 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047659 248 VVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315 (619)
Q Consensus 248 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 315 (619)
.......++.+.+.|+-+.-.++++.+.+. -+|++.....+..+|.+.|+..++.+++.+..+.|++
T Consensus 86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 86 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 334445556666666666666666665542 3456666666666666666666666666666666543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.21 E-value=0.59 Score=31.59 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 538 NISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICG 602 (619)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 602 (619)
+.-+..+-++.+....+.|++.+..+.+++|.+.+|+..|.++++..+.+ ..++...|..++..
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqe 84 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 84 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 33455566666666677788888888888888888888888888877743 22345566655543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.09 E-value=2.4 Score=28.60 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047659 505 SSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLL 565 (619)
Q Consensus 505 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 565 (619)
=++.+-++.+....+.|++....+.+.+|.+.+++..|.++++-.... ..++...|..++
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 344455555555566777777777777777777777777777766543 122334454443
|