Citrus Sinensis ID: 047660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQVIIIN
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHccccHHHHHHccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEccccccEEEEccccHHHHHHHcccccHHHHHHHHHHcccHHHHHHcccccHHHHHHcccccEEEEEEc
Coil and Loop (DISEMBL)
malsnnvirPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKgsgylapsRAYLEYRLDDfsgwlcrrvrspykwdRIKSYLsstqmcpelnQSYRMAQDFFnahitplqVIIIN
Flexible Loop (DISEMBL)
MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQVIIIN
Low Complexity Region (SEG)
MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPviilgililvvalaRFIGGFWRIHWllilylvamliliillaclvvfiYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQVIIIN
Disordered region (IsUnstruct)
*****NVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQVIII*
Disordered Region (DISOPRED)
*A*SNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSG*LAPSRAYLEYRLDDFSGWLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQVIIIN
Disordered Region (DISEMBL)
MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQVIIIN
Disordered Region (DISPRO)
**LSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQVIIIN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQVIIIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q9FIQ5	269	Protein TORNADO 2 OS=Arab	yes	no	0.970	0.617	0.722	5e-59
Q8S8Q6	273	Tetraspanin-8 OS=Arabidop	no	no	0.953	0.597	0.387	2e-31
Q9M1E7	285	Tetraspanin-3 OS=Arabidop	no	no	0.970	0.582	0.403	6e-31
Q9ZUN5	270	Tetraspanin-2 OS=Arabidop	no	no	0.970	0.614	0.467	2e-29
Q9SUD4	263	Tetraspanin-7 OS=Arabidop	no	no	0.953	0.619	0.369	1e-28
Q9M0B7	272	Tetraspanin-9 OS=Arabidop	no	no	0.959	0.602	0.355	3e-28
Q9C7C1	282	Tetraspanin-6 OS=Arabidop	no	no	0.941	0.570	0.384	1e-25
F4I214	284	Tetraspanin-10 OS=Arabido	no	no	0.964	0.580	0.343	4e-24
Q9LSS4	327	Tetraspanin-4 OS=Arabidop	no	no	0.970	0.507	0.380	2e-22
Q9LPR6	271	Tetraspanin-11 OS=Arabido	no	no	0.953	0.601	0.263	5e-13

>sp|Q9FIQ5|TRN2_ARATH Protein TORNADO 2 OS=Arabidopsis thaliana GN=TRN2 PE=1 SV=1

 Score =  226 bits (577), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 139/166 (83%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           M LSNNVI  IN + +LLSIPVIGAGIWLA    NSCVKLLQWPVIILG+LIL+V LA F
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           IGGFWRI WLL++YL+AMLILI+LL CLV FIYMV I+GSG+  PSRAYLEY L DFSGW
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L RRV+  YKW+RI++ LS+T +CPELNQ Y +AQDFFNAH+ P+Q
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQ 166

Involved in the basipetal transport of auxin (IAA) that modulates growth and organs organization, as well as cell differentiation. Regulates shoot apical meristem (SAM) organization in the peripheral zone. Required for initial meristematic divisions in the epidermal/lateral root cap leading to the formation of epidermal cells and a clone of lateral root cap cells, as well as for the maintenance of the radial pattern of cell specification in the root, thus regulating the distinction between the lateral root cap and epidermis. Together with WIH peptides, promotes megasporogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8Q6|TET8_ARATH Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 101/165 (61%), Gaps = 2/165 (1%)

Query: 4   SNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGG 63
           SNN++  +N +  LLSIP++  GIWL+ +    C + L  PVI LG+ ++VVA+A  IG 
Sbjct: 5   SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIGS 64

Query: 64  FWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCR 123
             R+ WLL +YL  M +LI+L+ C+ VF ++V  KG+G     + Y EY+L D+S WL +
Sbjct: 65  CCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQK 124

Query: 124 RVRSPYKWDRIKSYLSSTQMCPELNQSYRM--AQDFFNAHITPLQ 166
           RV +   W++I+S L  +++C +L   +       F+  H+T LQ
Sbjct: 125 RVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQ 169

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E7|TET3_ARATH Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1

 Score =  133 bits (334), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 109/171 (63%), Gaps = 5/171 (2%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNS-CVKLLQWPVIILGILILVVALAR 59
           M  SN++I  +N +  LLSIP++G GIWL++ A+++ C++ LQWP+I++GI I+VV+LA 
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 60  FIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSG 119
           F G  +R  +L+ LYLV ML++I  L   ++F Y V  KGSG    +R YL+Y L+D+SG
Sbjct: 61  FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query: 120 WLCRRVRSPYKWDRIKSYLSSTQMCPELNQSY----RMAQDFFNAHITPLQ 166
           WL  RV     W +I S L  +  C ++ +++      A  FF   ++P++
Sbjct: 121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVE 171

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUN5|TET2_ARATH Tetraspanin-2 OS=Arabidopsis thaliana GN=TET2 PE=2 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 109/167 (65%), Gaps = 1/167 (0%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           MAL+NN+   +NL+A+L SIP+  +GIWLA++ DN CV LL+WPV++LG+LILVV+   F
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           IG +     LL +YL  M ILI LL  +++F ++V      Y  P R Y EYRL+ FS W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFF-NAHITPLQ 166
           L   V     W R+++ L+ T +CP+LNQ +  A  FF ++ ITPLQ
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQ 167

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD4|TET7_ARATH Tetraspanin-7 OS=Arabidopsis thaliana GN=TET7 PE=2 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 2/165 (1%)

Query: 4   SNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGG 63
           SNN++  +N    LLSIP++ AGIWL   A   C + L  P+++LGI ++ V++A  +G 
Sbjct: 5   SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGA 64

Query: 64  FWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCR 123
             R+  LL LYL AM +LI+L  C  +F + V  +G+G +   R Y EY + D+S WL +
Sbjct: 65  CCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSNWLQK 124

Query: 124 RVRSPYKWDRIKSYLSSTQMCPELNQSYRM--AQDFFNAHITPLQ 166
           RV +   W+RI+S L  + +C      Y     +DF+ +++  LQ
Sbjct: 125 RVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQ 169

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0B7|TET9_ARATH Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 3   LSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIG 62
            SN+++  +N    LLS+P++  GIWL+ +A   C + L  P+I LG+ ++++A+A  +G
Sbjct: 4   FSNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKPMIALGVFLMIIAIAGVVG 63

Query: 63  GFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWLC 122
              R+ WLL  YL  M  LI+++ C  +F ++V  KGSG     +AY EYRL+ +S WL 
Sbjct: 64  SCCRVTWLLWSYLFVMFFLILIVLCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSDWLQ 123

Query: 123 RRVRSPYKWDRIKSYLSSTQMCP--ELNQSYRMAQDFFNAHITPLQ 166
           RRV +   W+ I+S L  ++ C   EL  +     DF+   +T  +
Sbjct: 124 RRVNNAKHWNSIRSCLYESKFCYNLELVTANHTVSDFYKEDLTAFE 169

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7C1|TET6_ARATH Tetraspanin-6 OS=Arabidopsis thaliana GN=TET6 PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 3/164 (1%)

Query: 3   LSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIG 62
            SN VI  +NL+ +L SIP+IG  ++ A  +  +C   LQ P++++G +IL+V+LA FIG
Sbjct: 4   FSNTVIGVLNLLTLLASIPIIGTALYKA-RSSTTCENFLQTPLLVIGFIILIVSLAGFIG 62

Query: 63  GFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWLC 122
             + + W L +YLV M+ LI  L  L +F  +V  +G G   P R Y EYRL D+  WL 
Sbjct: 63  ACFNVAWALWVYLVVMIFLIATLMGLTLFGLVVTSQGGGVEVPGRIYKEYRLGDYHPWLR 122

Query: 123 RRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
            RVR P  W+ I+S + S++ C ++     +  D+F   +T +Q
Sbjct: 123 ERVRDPEYWNSIRSCILSSKTCTKIESWTTL--DYFQRDMTSVQ 164

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I214|TET10_ARATH Tetraspanin-10 OS=Arabidopsis thaliana GN=TET10 PE=2 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 99/166 (59%), Gaps = 1/166 (0%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           M  S  VIR +NL+ +LL++ VI  G+W++T  D  C + L +PVI LG  I ++++  F
Sbjct: 3   MGTSTFVIRWVNLLTMLLAVAVIIFGVWMSTHND-GCRRSLTFPVIALGGFIFLISIIGF 61

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           +G   R   LL +YL  +LI++I +    V  ++V   GSG+  P   Y EY+L+D+S W
Sbjct: 62  LGACKRSVALLWIYLAVLLIVLIAILVFTVLAFIVTNNGSGHTNPGLRYKEYKLNDYSSW 121

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
             +++ +   W R+KS L  ++ C +L++ Y+  +   +A +TP++
Sbjct: 122 FLKQLNNTSNWIRLKSCLVKSEQCRKLSKKYKTIKQLKSAELTPIE 167

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSS4|TET4_ARATH Tetraspanin-4 OS=Arabidopsis thaliana GN=TET4 PE=3 SV=1

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 102/171 (59%), Gaps = 5/171 (2%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNS-CVKLLQWPVIILGILILVVALAR 59
           M   +N+I  IN    LLSIP++G GIWL++ A+++ C++ LQWP+II+GI I+V++LA 
Sbjct: 1   MRSRSNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAG 60

Query: 60  FIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSG 119
             G  ++  +L+ LYL  M  +I  L    +F Y+V  KGSG    +R YL+Y L+D+SG
Sbjct: 61  IAGACYQNKFLMWLYLFTMFFVIAALIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSG 120

Query: 120 WLCRRVRSPYKWDRIKSYLSSTQMCP----ELNQSYRMAQDFFNAHITPLQ 166
           WL  RV     W  I S +  + +C     +LN     A  F+  +++P++
Sbjct: 121 WLKDRVTDNGYWRDIGSCVRDSGVCKKIGRDLNGVPETAHMFYFRNLSPVE 171

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPR6|TET11_ARATH Tetraspanin-11 OS=Arabidopsis thaliana GN=TET11 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 89/167 (53%), Gaps = 4/167 (2%)

Query: 3   LSNNVIRPINLVAILLSIPVIGAGIWL-ATEADNSCVKLLQWPVIILGILILVVALARFI 61
           +SN ++   N + +L+    IG  I++   +    C   ++ P++  G+++ +V+L   I
Sbjct: 4   VSNFMVGLANTLVMLVGASAIGYSIYMFVHQGVTDCESAIRIPLLTTGLILFLVSLLGVI 63

Query: 62  GGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGWL 121
           G  ++ +  ++ YL+ +   I+ L    +F++ V  KG+G +   R Y EYR  DFS WL
Sbjct: 64  GSCFKENLAMVSYLIILFGGIVALMIFSIFLFFVTNKGAGRVVSGRGYKEYRTVDFSTWL 123

Query: 122 CRRVRSPYKWDRIKSYLSSTQMCPELNQS--YRMAQDFFNAHITPLQ 166
              V    +W  I+S L+   +C +L+     ++A  F++ +++P+Q
Sbjct: 124 NGFVGGK-RWVGIRSCLAEANVCDDLSDGRVSQIADAFYHKNLSPIQ 169

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
224074285	269	predicted protein [Populus trichocarpa]	0.970	0.617	0.819	3e-64
255554749	269	conserved hypothetical protein [Ricinus	0.970	0.617	0.813	3e-63
388519771	185	unknown [Lotus japonicus]	0.970	0.897	0.710	1e-62
225427187	269	PREDICTED: uncharacterized protein LOC10	0.970	0.617	0.777	1e-62
224138936	269	predicted protein [Populus trichocarpa]	0.970	0.617	0.825	4e-60
118482532	269	unknown [Populus trichocarpa]	0.970	0.617	0.819	1e-59
449462065	269	PREDICTED: uncharacterized protein LOC10	0.970	0.617	0.692	2e-58
449437228	274	PREDICTED: uncharacterized protein LOC10	0.970	0.605	0.656	2e-58
15237490	269	Tetraspanin family protein [Arabidopsis	0.970	0.617	0.722	2e-57
17979386	269	putative senescence-associated protein 5	0.970	0.617	0.722	2e-57

>gi|224074285|ref|XP_002304338.1| predicted protein [Populus trichocarpa] gi|222841770|gb|EEE79317.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 147/166 (88%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           MALSNNVI  IN VA+LLSIPVIGAGIWLATE DNSCVK+LQWPVIILG+LIL VALA F
Sbjct: 1   MALSNNVIGAINFVAMLLSIPVIGAGIWLATEPDNSCVKILQWPVIILGMLILKVALAGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           +GGFWRI WLLI YL+AMLILIILLACL VFIYMV ++GSG+LAPSRAYLEYRLDDFSGW
Sbjct: 61  VGGFWRIPWLLIFYLIAMLILIILLACLTVFIYMVTVRGSGHLAPSRAYLEYRLDDFSGW 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L RRV S YKWDRI+  LSS+  C ELNQSY MAQDFFNAHI+PLQ
Sbjct: 121 LRRRVHSSYKWDRIRGCLSSSNTCAELNQSYHMAQDFFNAHISPLQ 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554749|ref|XP_002518412.1| conserved hypothetical protein [Ricinus communis] gi|223542257|gb|EEF43799.1| conserved hypothetical protein [Ricinus communis]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 135/166 (81%), Positives = 149/166 (89%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           MALSNNVI  IN VA+LLSIP+IGAGIWLA E DNSCV++LQWPVIILGILILVVALA F
Sbjct: 1   MALSNNVIGAINFVAMLLSIPIIGAGIWLAMEPDNSCVRILQWPVIILGILILVVALAGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           +GGFWRI WLLI YL+AMLILIILLACLVVFIYMV ++GSG+LAPSR YLEY LDD+SGW
Sbjct: 61  VGGFWRIPWLLIFYLIAMLILIILLACLVVFIYMVTLRGSGHLAPSRTYLEYHLDDYSGW 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L +RV+S YKWDRI+S LSS+ MC ELNQSYRMAQDFFNA ITPLQ
Sbjct: 121 LRQRVQSSYKWDRIRSCLSSSSMCAELNQSYRMAQDFFNARITPLQ 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519771|gb|AFK47947.1| unknown [Lotus japonicus]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/166 (71%), Positives = 139/166 (83%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           MA+SNNVI  +N VA+LLSIP+IGAGIWL   A +SCV  LQWPVIILG+LILVVALA  
Sbjct: 1   MAMSNNVIGAVNFVAVLLSIPIIGAGIWLMNGAADSCVSFLQWPVIILGVLILVVALAGC 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           IG F+RI WLLI+YL+AMLIL+IL+ CL VF+YMV I+G G + P+RAYLEYRLDDFSG+
Sbjct: 61  IGAFFRISWLLIIYLIAMLILVILVICLAVFVYMVTIRGHGLMEPNRAYLEYRLDDFSGF 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L RRVRS +KWD I+S LS T MC ELNQS+RMAQDFFNA +TP+Q
Sbjct: 121 LRRRVRSSFKWDHIRSCLSQTNMCAELNQSFRMAQDFFNARLTPMQ 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427187|ref|XP_002278741.1| PREDICTED: uncharacterized protein LOC100266064 [Vitis vinifera] gi|147774778|emb|CAN69080.1| hypothetical protein VITISV_042237 [Vitis vinifera] gi|297742090|emb|CBI33877.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/166 (77%), Positives = 146/166 (87%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           MAL+N VI  IN VA+LLSIP+IG GIWL+TE DNSCVK+LQWPVIILG+LILVVALA F
Sbjct: 1   MALNNTVIGAINFVAMLLSIPIIGTGIWLSTEPDNSCVKILQWPVIILGVLILVVALAGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           IGGFWRI WLL+ YL+AMLILIILLA LVVFIYMV ++G G++ PSRAYLEY LDD+SGW
Sbjct: 61  IGGFWRIPWLLLFYLIAMLILIILLASLVVFIYMVTVRGHGHIEPSRAYLEYHLDDYSGW 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L RRVRS YKWDRI++ LSST MC ELNQ YRMAQDFFNAHI+P+Q
Sbjct: 121 LRRRVRSSYKWDRIRTCLSSTNMCAELNQRYRMAQDFFNAHISPIQ 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138936|ref|XP_002326727.1| predicted protein [Populus trichocarpa] gi|222834049|gb|EEE72526.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 150/166 (90%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           MALS+NVI  IN VA+LLSIP+IGAGIWLA E DNSCVK+LQWPVIILGILIL+VALA F
Sbjct: 1   MALSSNVIGAINFVAMLLSIPIIGAGIWLAMEPDNSCVKILQWPVIILGILILIVALAGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           +GGFWRI WLLI YL+AMLILIILLACLVVFIYMV ++GSG+L PSRAYLEYRLDDFSGW
Sbjct: 61  VGGFWRIPWLLISYLIAMLILIILLACLVVFIYMVTVRGSGHLEPSRAYLEYRLDDFSGW 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L RRV+S YKWDRI+  LSST MC ELNQSYRMAQDFFNAHI+PLQ
Sbjct: 121 LRRRVQSSYKWDRIRGCLSSTNMCAELNQSYRMAQDFFNAHISPLQ 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482532|gb|ABK93187.1| unknown [Populus trichocarpa]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 150/166 (90%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           MALS+NVI  IN VA+LLSIP+IGAGIWLA E DNSCVK+LQWP+IILGILIL+VALA F
Sbjct: 1   MALSSNVIGAINFVAMLLSIPIIGAGIWLAMEPDNSCVKILQWPIIILGILILIVALAGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           +GGFWRI WLLI YL+AMLILIILLACLVVFIYMV ++GSG+L PSRAYLEYRLDDFSGW
Sbjct: 61  VGGFWRIPWLLISYLIAMLILIILLACLVVFIYMVTVRGSGHLEPSRAYLEYRLDDFSGW 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L RRV+S YKWDRI+  LSST MC ELNQSYRMAQDFFNAHI+PLQ
Sbjct: 121 LRRRVQSSYKWDRIRGCLSSTNMCAELNQSYRMAQDFFNAHISPLQ 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462065|ref|XP_004148762.1| PREDICTED: uncharacterized protein LOC101210867 [Cucumis sativus] gi|449515277|ref|XP_004164676.1| PREDICTED: uncharacterized protein LOC101223573 [Cucumis sativus]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/166 (69%), Positives = 141/166 (84%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           MALSNNVI  IN +A++LSIPVIGAGIWLATE DN+CV++LQWPVIILGI+I +VALA F
Sbjct: 1   MALSNNVIAAINFIALILSIPVIGAGIWLATEPDNACVQVLQWPVIILGIVIFLVALAGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           IG FWR+ WLL+ YL+AML+LIILL  L++F++ V ++GSG+  PSRAYLEY LD+FS W
Sbjct: 61  IGAFWRVSWLLMFYLIAMLVLIILLGSLIIFVFSVTMRGSGHAEPSRAYLEYHLDEFSLW 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L RRVRS +KW+RI++ LSS+  C ELNQ+YR AQDFFNAHITP Q
Sbjct: 121 LQRRVRSSHKWERIRNCLSSSTTCAELNQNYRFAQDFFNAHITPFQ 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437228|ref|XP_004136394.1| PREDICTED: uncharacterized protein LOC101218363 [Cucumis sativus] gi|449529050|ref|XP_004171514.1| PREDICTED: uncharacterized protein LOC101223520 [Cucumis sativus]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/166 (65%), Positives = 141/166 (84%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           MAL+  V+  IN +A+++SIP+IGAGIWLAT+ DN+CV++LQWP+II G+++L+VA+A F
Sbjct: 1   MALNKTVMGAINFIAMVVSIPIIGAGIWLATQQDNACVQILQWPLIIFGVIVLLVAVAGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           IG F RI+WLLI YLVAMLILI+LL CLV FIYMV I+GSG+L P+R+YLEY L+DFSG+
Sbjct: 61  IGAFCRINWLLIAYLVAMLILIVLLGCLVGFIYMVTIRGSGHLEPNRSYLEYHLEDFSGF 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L  RV+S +KWD I+S LSS+ MC ELNQS+R+AQDFF A I+PLQ
Sbjct: 121 LRHRVQSSFKWDLIRSCLSSSSMCAELNQSFRLAQDFFTAPISPLQ 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237490|ref|NP_199482.1| Tetraspanin family protein [Arabidopsis thaliana] gi|75262522|sp|Q9FIQ5.1|TRN2_ARATH RecName: Full=Protein TORNADO 2; AltName: Full=Protein EKEKO; AltName: Full=TETRASPANIN-1 gi|9758506|dbj|BAB08914.1| senescence-associated protein 5-like protein [Arabidopsis thaliana] gi|56381915|gb|AAV85676.1| At5g46700 [Arabidopsis thaliana] gi|110740669|dbj|BAE98437.1| senescence-associated protein 5-like protein [Arabidopsis thaliana] gi|332008032|gb|AED95415.1| Tetraspanin family protein [Arabidopsis thaliana]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 139/166 (83%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           M LSNNVI  IN + +LLSIPVIGAGIWLA    NSCVKLLQWPVIILG+LIL+V LA F
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           IGGFWRI WLL++YL+AMLILI+LL CLV FIYMV I+GSG+  PSRAYLEY L DFSGW
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L RRV+  YKW+RI++ LS+T +CPELNQ Y +AQDFFNAH+ P+Q
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQ 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17979386|gb|AAL49918.1| putative senescence-associated protein 5 [Arabidopsis thaliana]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 139/166 (83%)

Query: 1   MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60
           M LSNNVI  IN + +LLSIPVIGAGIWLA    NSCVKLLQWPVIILG+LIL+V LA F
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  IGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
           IGGFWRI WLL++YL+AMLILI+LL CLV FIYMV I+GSG+  PSRAYLEY L DFSGW
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
           L RRV+  YKW+RI++ LS+T +CPELNQ Y +AQDFFNAH+ P+Q
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQ 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2178570	269	TRN2 "AT5G46700" [Arabidopsis	0.970	0.617	0.554	3.9e-44
TAIR|locus:2050354	270	TET2 "AT2G19580" [Arabidopsis	0.970	0.614	0.353	3.3e-24
TAIR|locus:2085692	285	TET3 "AT3G45600" [Arabidopsis	0.970	0.582	0.298	1.4e-18
TAIR|locus:2048982	273	TET8 "AT2G23810" [Arabidopsis	0.953	0.597	0.272	3.2e-17
TAIR|locus:2099272	282	TET6 "AT3G12090" [Arabidopsis	0.935	0.567	0.294	4.7e-16
TAIR|locus:2118696	272	TET9 "AT4G30430" [Arabidopsis	0.953	0.599	0.272	4.7e-16
TAIR|locus:2132992	263	TET7 "AT4G28050" [Arabidopsis	0.953	0.619	0.266	1.6e-15
TAIR|locus:2038488	284	TET10 "tetraspanin10" [Arabido	0.964	0.580	0.265	1.6e-15
TAIR|locus:2144050	327	TET4 "tetraspanin4" [Arabidops	0.970	0.507	0.286	1.7e-15
TAIR|locus:2014054	271	TET11 "AT1G18520" [Arabidopsis	0.953	0.601	0.215	9.9e-07

TAIR|locus:2178570 TRN2 "AT5G46700" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 92/166 (55%), Positives = 105/166 (63%)

Query:     1 MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPXXXXXXXXXXXXXXRF 60
             M LSNNVI  IN + +LLSIPVIGAGIWLA    NSCVKLLQWP               F
Sbjct:     1 MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query:    61 IGGFWRIHWXXXXXXXXXXXXXXXXXXXXXXXYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
             IGGFWRI W                       YMV I+GSG+  PSRAYLEY L DFSGW
Sbjct:    61 IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query:   121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
             L RRV+  YKW+RI++ LS+T +CPELNQ Y +AQDFFNAH+ P+Q
Sbjct:   121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQ 166

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0009956 "radial pattern formation" evidence=IMP

GO:0010015 "root morphogenesis" evidence=RCA;IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2050354 TET2 "AT2G19580" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 59/167 (35%), Positives = 82/167 (49%)

Query:     1 MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPXXXXXXXXXXXXXXRF 60
             MAL+NN+   +NL+A+L SIP+  +GIWLA++ DN CV LL+WP               F
Sbjct:     1 MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query:    61 IGGFWRIHWXXXXXXXXXXXXXXXXXXXXXXXYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
             IG +                            ++V      Y  P R Y EYRL+ FS W
Sbjct:    61 IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query:   121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAH-ITPLQ 166
             L   V     W R+++ L+ T +CP+LNQ +  A  FF++  ITPLQ
Sbjct:   121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQ 167

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2085692 TET3 "AT3G45600" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 51/171 (29%), Positives = 81/171 (47%)

Query:     1 MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNS-CVKLLQWPXXXXXXXXXXXXXXR 59
             M  SN++I  +N +  LLSIP++G GIWL++ A+++ C++ LQWP               
Sbjct:     1 MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query:    60 FIGGFWRIHWXXXXXXXXXXXXXXXXXXXXXXXYMVMIKGSGYLAPSRAYLEYRLDDFSG 119
             F G  +R  +                       Y V  KGSG    +R YL+Y L+D+SG
Sbjct:    61 FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query:   120 WLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYR----MAQDFFNAHITPLQ 166
             WL  RV     W +I S L  +  C ++ +++      A  FF   ++P++
Sbjct:   121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVE 171

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2048982 TET8 "AT2G23810" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 45/165 (27%), Positives = 73/165 (44%)

Query:     4 SNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPXXXXXXXXXXXXXXRFIGG 63
             SNN++  +N +  LLSIP++  GIWL+ +    C + L  P                IG 
Sbjct:     5 SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIGS 64

Query:    64 FWRIHWXXXXXXXXXXXXXXXXXXXXXXXYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCR 123
               R+ W                       ++V  KG+G     + Y EY+L D+S WL +
Sbjct:    65 CCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQK 124

Query:   124 RVRSPYKWDRIKSYLSSTQMCPELNQSYRMA--QDFFNAHITPLQ 166
             RV +   W++I+S L  +++C +L   +       F+  H+T LQ
Sbjct:   125 RVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQ 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2099272 TET6 "AT3G12090" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 48/163 (29%), Positives = 73/163 (44%)

Query:     4 SNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPXXXXXXXXXXXXXXRFIGG 63
             SN VI  +NL+ +L SIP+IG  ++ A  +  +C   LQ P               FIG 
Sbjct:     5 SNTVIGVLNLLTLLASIPIIGTALYKA-RSSTTCENFLQTPLLVIGFIILIVSLAGFIGA 63

Query:    64 FWRIHWXXXXXXXXXXXXXXXXXXXXXXXYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCR 123
              + + W                        +V  +G G   P R Y EYRL D+  WL  
Sbjct:    64 CFNVAWALWVYLVVMIFLIATLMGLTLFGLVVTSQGGGVEVPGRIYKEYRLGDYHPWLRE 123

Query:   124 RVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
             RVR P  W+ I+S + S++ C ++ +S+    D+F   +T +Q
Sbjct:   124 RVRDPEYWNSIRSCILSSKTCTKI-ESWTTL-DYFQRDMTSVQ 164

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2118696 TET9 "AT4G30430" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 45/165 (27%), Positives = 71/165 (43%)

Query:     4 SNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPXXXXXXXXXXXXXXRFIGG 63
             SN+++  +N    LLS+P++  GIWL+ +A   C + L  P                +G 
Sbjct:     5 SNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKPMIALGVFLMIIAIAGVVGS 64

Query:    64 FWRIHWXXXXXXXXXXXXXXXXXXXXXXXYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCR 123
               R+ W                       ++V  KGSG     +AY EYRL+ +S WL R
Sbjct:    65 CCRVTWLLWSYLFVMFFLILIVLCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSDWLQR 124

Query:   124 RVRSPYKWDRIKSYLSSTQMCP--ELNQSYRMAQDFFNAHITPLQ 166
             RV +   W+ I+S L  ++ C   EL  +     DF+   +T  +
Sbjct:   125 RVNNAKHWNSIRSCLYESKFCYNLELVTANHTVSDFYKEDLTAFE 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2132992 TET7 "AT4G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 44/165 (26%), Positives = 69/165 (41%)

Query:     4 SNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPXXXXXXXXXXXXXXRFIGG 63
             SNN++  +N    LLSIP++ AGIWL   A   C + L  P                +G 
Sbjct:     5 SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGA 64

Query:    64 FWRIHWXXXXXXXXXXXXXXXXXXXXXXXYMVMIKGSGYLAPSRAYLEYRLDDFSGWLCR 123
               R+                         + V  +G+G +   R Y EY + D+S WL +
Sbjct:    65 CCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSNWLQK 124

Query:   124 RVRSPYKWDRIKSYLSSTQMCPELNQSYRM--AQDFFNAHITPLQ 166
             RV +   W+RI+S L  + +C      Y     +DF+ +++  LQ
Sbjct:   125 RVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQ 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2038488 TET10 "tetraspanin10" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 44/166 (26%), Positives = 77/166 (46%)

Query:     1 MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPXXXXXXXXXXXXXXRF 60
             M  S  VIR +NL+ +LL++ VI  G+W++T  D  C + L +P               F
Sbjct:     3 MGTSTFVIRWVNLLTMLLAVAVIIFGVWMSTHNDG-CRRSLTFPVIALGGFIFLISIIGF 61

Query:    61 IGGFWRIHWXXXXXXXXXXXXXXXXXXXXXXXYMVMIKGSGYLAPSRAYLEYRLDDFSGW 120
             +G   R                          ++V   GSG+  P   Y EY+L+D+S W
Sbjct:    62 LGACKRSVALLWIYLAVLLIVLIAILVFTVLAFIVTNNGSGHTNPGLRYKEYKLNDYSSW 121

Query:   121 LCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRMAQDFFNAHITPLQ 166
               +++ +   W R+KS L  ++ C +L++ Y+  +   +A +TP++
Sbjct:   122 FLKQLNNTSNWIRLKSCLVKSEQCRKLSKKYKTIKQLKSAELTPIE 167

GO:0005576 "extracellular region" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2144050 TET4 "tetraspanin4" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 49/171 (28%), Positives = 78/171 (45%)

Query:     1 MALSNNVIRPINLVAILLSIPVIGAGIWLATEADNS-CVKLLQWPXXXXXXXXXXXXXXR 59
             M   +N+I  IN    LLSIP++G GIWL++ A+++ C++ LQWP               
Sbjct:     1 MRSRSNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAG 60

Query:    60 FIGGFWRIHWXXXXXXXXXXXXXXXXXXXXXXXYMVMIKGSGYLAPSRAYLEYRLDDFSG 119
               G  ++  +                       Y+V  KGSG    +R YL+Y L+D+SG
Sbjct:    61 IAGACYQNKFLMWLYLFTMFFVIAALIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSG 120

Query:   120 WLCRRVRSPYKWDRIKSYLSSTQMCP----ELNQSYRMAQDFFNAHITPLQ 166
             WL  RV     W  I S +  + +C     +LN     A  F+  +++P++
Sbjct:   121 WLKDRVTDNGYWRDIGSCVRDSGVCKKIGRDLNGVPETAHMFYFRNLSPVE 171

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2014054 TET11 "AT1G18520" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 36/167 (21%), Positives = 67/167 (40%)

Query:     3 LSNNVIRPINLVAILLSIPVIGAGIWLAT-EADNSCVKLLQWPXXXXXXXXXXXXXXRFI 61
             +SN ++   N + +L+    IG  I++   +    C   ++ P                I
Sbjct:     4 VSNFMVGLANTLVMLVGASAIGYSIYMFVHQGVTDCESAIRIPLLTTGLILFLVSLLGVI 63

Query:    62 GGFWRIHWXXXXXXXXXXXXXXXXXXXXXXXYMVMIKGSGYLAPSRAYLEYRLDDFSGWL 121
             G  ++ +                        + V  KG+G +   R Y EYR  DFS WL
Sbjct:    64 GSCFKENLAMVSYLIILFGGIVALMIFSIFLFFVTNKGAGRVVSGRGYKEYRTVDFSTWL 123

Query:   122 CRRVRSPYKWDRIKSYLSSTQMCPELNQSY--RMAQDFFNAHITPLQ 166
                V    +W  I+S L+   +C +L+     ++A  F++ +++P+Q
Sbjct:   124 NGFVGGK-RWVGIRSCLAEANVCDDLSDGRVSQIADAFYHKNLSPIQ 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FIQ5	TRN2_ARATH	No assigned EC number	0.7228	0.9707	0.6171	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
pfam00335	221	pfam00335, Tetraspannin, Tetraspanin family	8e-11

>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family

 Score = 57.8 bits (140), Expect = 8e-11
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 3   LSNNVIRPINLVAILLSIPVIGAGIWLA-------TEADNSCVKLLQWPVIILGILILVV 55
               ++  +NL+ +LL + ++  GIWL          A N  ++ L   +I+LG++IL+V
Sbjct: 1   CLKYLLFLLNLLFLLLGLALLAVGIWLLVIAKDYLAIALNDSIRALYILIIVLGVIILLV 60

Query: 56  ALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKGSGYLAPSRAYLEYRLD 115
                 G       LL+ Y + +LIL IL     +  ++   K    L     Y +   +
Sbjct: 61  GFLGCCGAIKESRCLLLTYFILLLILFILEIAAGILAFVYRDKLESSLKEGLNYKDKSYN 120

Query: 116 DFSGW 120
           D    
Sbjct: 121 DDPNL 125

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
KOG3882	237	consensus Tetraspanin family integral membrane pro	99.94
PF00335	221	Tetraspannin: Tetraspanin family RDS_ROM1 subfamil	99.57
cd03154	100	TM4SF3_like_LEL Tetraspanin, extracellular domain	95.68
cd03160	117	CD37_CD82_like_LEL Tetraspanin, extracellular doma	95.11
cd03163	105	TM4SF8_like_LEL Tetraspanin, extracellular domain	95.0
cd03161	104	TM4SF2_6_like_LEL Tetraspanin, extracellular domai	94.93
cd03165	98	NET-5_like_LEL Tetraspanin, extracellular domain o	94.39
cd03164	86	CD53_like_LEL Tetraspanin, extracellular domain or	94.13
cd03159	121	TM4SF9_like_LEL Tetraspanin, extracellular domain	93.79
cd03162	143	peripherin_like_LEL Tetraspanin, extracellular dom	93.71
cd03156	114	uroplakin_I_like_LEL Tetraspanin, extracellular do	91.42
cd03127	90	tetraspanin_LEL Tetraspanin, extracellular domain	91.05
cd03155	110	CD151_like_LEL Tetraspanin, extracellular domain o	89.79
cd03167	120	oculospanin_like_LEL Tetraspanin, extracellular do	89.51
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	87.77
cd03166	99	CD63_LEL Tetraspanin, extracellular domain or larg	86.76
PF05915	115	DUF872: Eukaryotic protein of unknown function (DU	85.27
cd03158	119	penumbra_like_LEL Tetraspanin, extracellular domai	84.95
PRK12585	197	putative monovalent cation/H+ antiporter subunit G	83.12

>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]

Probab=99.94  E-value=2.7e-27  Score=192.74  Aligned_cols=152  Identities=18%  Similarity=0.310  Sum_probs=112.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhh------hhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHH
Q 047660            3 LSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVK------LLQWPVIILGILILVVALARFIGGFWRIHWLLILYLV   76 (171)
Q Consensus         3 ~~~~~l~~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~------~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~   76 (171)
                      +.||+++++|+++|++|++++++|+|+..++......      ...+.+|++|.+++++||+||+||+|||+|+|.+|++
T Consensus         8 ~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~   87 (237)
T KOG3882|consen    8 CLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYFI   87 (237)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHH
Confidence            7899999999999999999999999999875422111      1233479999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhheeeeccccccC---CcccccccccccccchhhhhcccccccccccccccCCCCCCCCccCCcC
Q 047660           77 AMLILIILLACLVVFIYMVMIKGSGYLA---PSRAYLEYRLDDFSGWLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRM  153 (171)
Q Consensus        77 ~l~vl~~~el~~~i~~~~~~~~~~~~~~---~~~~i~~y~~~~~~d~~Q~~~~~~~dW~~~~sC~~~~~~C~~~~~~~~~  153 (171)
                      ++++++++|+++++++++++++.+++..   ..+.++.|+.++.         ..+.||.+|    +.-.|++.+    +
T Consensus        88 ~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~---------~~~~~d~~Q----~~~~CCG~~----~  150 (237)
T KOG3882|consen   88 LLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPD---------LGEAWDKLQ----RELKCCGVN----G  150 (237)
T ss_pred             HHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCcc---------HHHHHHHHH----HhccCCcCC----C
Confidence            9999999999999999999887765432   1122223322221         003477776    346666666    3


Q ss_pred             hhhHHhcCCCCCCCCCCC
Q 047660          154 AQDFFNAHITPLQVIIIN  171 (171)
Q Consensus       154 ~~d~~~~~lspiqsgCc~  171 (171)
                      +.||...+..++|.+||+
T Consensus       151 ~~~~~~~~~~~vP~SCC~  168 (237)
T KOG3882|consen  151 YSDYFNCSSNNVPPSCCK  168 (237)
T ss_pred             chHHhcCCCCCCCcccCC
Confidence            456655554338888885

>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []

Probab=99.57  E-value=3.2e-17  Score=127.96  Aligned_cols=132  Identities=23%  Similarity=0.420  Sum_probs=18.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHh-hccccc-----hhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHH
Q 047660            3 LSNNVIRPINLVAILLSIPVIGAGIWLA-TEADNS-----CVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLV   76 (171)
Q Consensus         3 ~~~~~l~~~N~l~~l~Gi~ll~~Giw~~-~~~~~~-----~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~   76 (171)
                      +.|++++++|++++++|++++++|+|+. .+...+     ........++.+|+++++++++|++|+.|||++++.+|.+
T Consensus         1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~   80 (221)
T PF00335_consen    1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII   80 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence            5799999999999999999999999993 221111     1112233467799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhheeeeccccccCCc---cccccccccc----ccchhhhh-----cccccccccc
Q 047660           77 AMLILIILLACLVVFIYMVMIKGSGYLAPS---RAYLEYRLDD----FSGWLCRR-----VRSPYKWDRI  134 (171)
Q Consensus        77 ~l~vl~~~el~~~i~~~~~~~~~~~~~~~~---~~i~~y~~~~----~~d~~Q~~-----~~~~~dW~~~  134 (171)
                      ++++++++|++++++++.++++........   ...+.+..++    ..|.+|++     +++++||...
T Consensus        81 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~  150 (221)
T PF00335_consen   81 LLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTS  150 (221)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHH
T ss_pred             chhhHHHHHHHHHHhhhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCcccccc
Confidence            999999999999999999887665432100   0111122111    12667777     4688888765

CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.

>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily

Probab=95.68  E-value=0.00052  Score=48.25  Aligned_cols=44  Identities=5%  Similarity=-0.219  Sum_probs=27.4

Q ss_pred             HHhhheeeecccccc--CCcccccccccc--cc---cchhhhhc-----ccccccc
Q 047660           89 VVFIYMVMIKGSGYL--APSRAYLEYRLD--DF---SGWLCRRV-----RSPYKWD  132 (171)
Q Consensus        89 ~i~~~~~~~~~~~~~--~~~~~i~~y~~~--~~---~d~~Q~~~-----~~~~dW~  132 (171)
                      ||++|++++++....  .+.+.+++|..+  +.   .|.+|+++     +++.||.
T Consensus         1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~~~~~~~~~d~lQ~~l~CCG~~~~~d~~   56 (100)
T cd03154           1 GIVGAVYKPKIENELKEKNTKLLSLLGQNAKSVKKSLEKFQKELKCCGLVNGADDW   56 (100)
T ss_pred             CEEEEEeHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCCCCchhhc
Confidence            478889998876543  234556666433  22   27788874     5666664

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.

>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family

Probab=95.11  E-value=0.0016  Score=47.10  Aligned_cols=40  Identities=13%  Similarity=0.193  Sum_probs=20.6

Q ss_pred             heeeecccccc--CCcccccccccc----cc---cchhhhhc-----ccccccc
Q 047660           93 YMVMIKGSGYL--APSRAYLEYRLD----DF---SGWLCRRV-----RSPYKWD  132 (171)
Q Consensus        93 ~~~~~~~~~~~--~~~~~i~~y~~~----~~---~d~~Q~~~-----~~~~dW~  132 (171)
                      |+++++++...  .+.+.+++|..+    +.   .|.+|+++     +++.||.
T Consensus         2 ~v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~   55 (117)
T cd03160           2 YFQRDKLKQEMGDIVEKVIQNYGGNPENKTAEEAWDYVQFQLQCCGWTGPQDWT   55 (117)
T ss_pred             ceeHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhhCcccCCCCchhHH
Confidence            56676665432  223455565432    11   26666663     5666664

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos

>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily

Probab=95.00  E-value=0.0018  Score=45.93  Aligned_cols=41  Identities=17%  Similarity=0.351  Sum_probs=22.8

Q ss_pred             heeeecccccc--CCcccccccccccc----cchhhhhc-----cccccccc
Q 047660           93 YMVMIKGSGYL--APSRAYLEYRLDDF----SGWLCRRV-----RSPYKWDR  133 (171)
Q Consensus        93 ~~~~~~~~~~~--~~~~~i~~y~~~~~----~d~~Q~~~-----~~~~dW~~  133 (171)
                      |+++++++...  .+.+.+++|+.++.    .|.+|+++     ++++||..
T Consensus         2 ~v~~~~v~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~~   53 (105)
T cd03163           2 YVYRAKVEDELNPSIDKVFNKYNGTNAESRAVDYLQRQLQCCGIHNYTDWEN   53 (105)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCcccCCCCHHHHhh
Confidence            55666655432  22344555653222    37788874     67888853

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.

>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily

Probab=94.93  E-value=0.0025  Score=44.82  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=20.7

Q ss_pred             eeeecccccc--CCccccccccccc----ccchhhhhc-----cccccccc
Q 047660           94 MVMIKGSGYL--APSRAYLEYRLDD----FSGWLCRRV-----RSPYKWDR  133 (171)
Q Consensus        94 ~~~~~~~~~~--~~~~~i~~y~~~~----~~d~~Q~~~-----~~~~dW~~  133 (171)
                      ++++++....  .+.+.+++|..++    ..|.+|+++     ++++||..
T Consensus         2 v~r~~i~~~l~~~l~~~i~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~~   52 (104)
T cd03161           2 VFRHEIKGTFLRTYNEAVSNYNGDDERSDAVDTVQRTLHCCGVENYTDWLN   52 (104)
T ss_pred             CchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhcCcCcCCCChhhhhc
Confidence            4555544322  2234555564322    127777773     67788853

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.

>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family

Probab=94.39  E-value=0.0029  Score=44.12  Aligned_cols=15  Identities=7%  Similarity=0.067  Sum_probs=9.0

Q ss_pred             chhhhhc-----cccccccc
Q 047660          119 GWLCRRV-----RSPYKWDR  133 (171)
Q Consensus       119 d~~Q~~~-----~~~~dW~~  133 (171)
                      |.+|+++     +++.||..
T Consensus        35 d~~Q~~l~CCG~~~~~Dw~~   54 (98)
T cd03165          35 DITQTEFRCCGVTNYTDWYE   54 (98)
T ss_pred             HHHHHhCcCcCCCChhHHHH
Confidence            5666663     56666643

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.

>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family

Probab=94.13  E-value=0.0027  Score=43.41  Aligned_cols=14  Identities=7%  Similarity=0.361  Sum_probs=7.6

Q ss_pred             chhhhhc-----ccccccc
Q 047660          119 GWLCRRV-----RSPYKWD  132 (171)
Q Consensus       119 d~~Q~~~-----~~~~dW~  132 (171)
                      |.+|+++     ++++||.
T Consensus        33 d~iQ~~l~CCG~~~~~Dw~   51 (86)
T cd03164          33 DMIQSNLQCCGINGTTDWG   51 (86)
T ss_pred             HHHHHHhcCCCCCChhhhC
Confidence            5566553     5556663

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.

>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily

Probab=93.79  E-value=0.0047  Score=45.06  Aligned_cols=40  Identities=20%  Similarity=0.168  Sum_probs=19.4

Q ss_pred             eeeecccccc--CCccccccccccc----ccchhhhhc-----cccccccc
Q 047660           94 MVMIKGSGYL--APSRAYLEYRLDD----FSGWLCRRV-----RSPYKWDR  133 (171)
Q Consensus        94 ~~~~~~~~~~--~~~~~i~~y~~~~----~~d~~Q~~~-----~~~~dW~~  133 (171)
                      +++++++...  .+.+.+++|..++    ..|.+|+++     ++++||..
T Consensus         2 v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~D~iQ~~l~CCG~~~~~DW~~   52 (121)
T cd03159           2 VFKDWIKDQLTEFLNNNIRAYRDDIDLQNLIDFLQEYWQCCGARGPDDWNL   52 (121)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhccCCCCCChHHhcc
Confidence            4555544322  2234555554211    126666663     56666653

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.

>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family

Probab=93.71  E-value=0.01  Score=45.40  Aligned_cols=29  Identities=21%  Similarity=0.200  Sum_probs=20.1

Q ss_pred             ccccccccccc------c---cchhhhhc-----ccccccccc
Q 047660          106 SRAYLEYRLDD------F---SGWLCRRV-----RSPYKWDRI  134 (171)
Q Consensus       106 ~~~i~~y~~~~------~---~d~~Q~~~-----~~~~dW~~~  134 (171)
                      .+++++|+.++      .   .|++|+++     ++++||..+
T Consensus        16 ~~~i~~Y~~~~~~~~~~~~~~~D~lQ~~fkCCG~~~y~DW~~~   58 (143)
T cd03162          16 KNAMKFYKDTDTPGRCFLKKTIDMLQIEFQCCGNNGYRDWFEI   58 (143)
T ss_pred             HHHHHHhcCCcccchhhHHHHHHHHHHhccCCCCCChhhhhhh
Confidence            45567775432      2   38899985     789999864

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her

>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family

Probab=91.42  E-value=0.064  Score=37.95  Aligned_cols=42  Identities=7%  Similarity=0.042  Sum_probs=19.6

Q ss_pred             hheeeecccccc--CCcccccccccc--cc---cchhhhhc-----cccccccc
Q 047660           92 IYMVMIKGSGYL--APSRAYLEYRLD--DF---SGWLCRRV-----RSPYKWDR  133 (171)
Q Consensus        92 ~~~~~~~~~~~~--~~~~~i~~y~~~--~~---~d~~Q~~~-----~~~~dW~~  133 (171)
                      +++++++++...  .+.+.+++|..+  +.   .|.+|+++     +++.||..
T Consensus         2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~~   55 (114)
T cd03156           2 ALFFKKDLEDSFKNLLKNNYGNYNSTGDAITSTWNRVMIELKCCGVNGPTDFVD   55 (114)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcccCcCCCCcHHHHh
Confidence            455565554332  223445555421  11   25566653     56666643

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma

>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL)

Probab=91.05  E-value=0.08  Score=35.53  Aligned_cols=26  Identities=15%  Similarity=0.195  Sum_probs=12.8

Q ss_pred             CCCCCCCccCCcChhhHHhcCCCCCCCCCCC
Q 047660          141 TQMCPELNQSYRMAQDFFNAHITPLQVIIIN  171 (171)
Q Consensus       141 ~~~C~~~~~~~~~~~d~~~~~lspiqsgCc~  171 (171)
                      .-.|+|.+    ++.||...+ .++|.+||+
T Consensus        38 ~l~CCG~~----~~~D~~~~~-~~vP~SCc~   63 (90)
T cd03127          38 TFECCGVN----GPTDYLDLR-LLVPSSCCK   63 (90)
T ss_pred             hCcCcCCC----ChHHHccCC-CCCCHhhcC
Confidence            34555554    444554322 356666663

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr

>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family

Probab=89.79  E-value=0.14  Score=36.30  Aligned_cols=15  Identities=13%  Similarity=0.244  Sum_probs=11.3

Q ss_pred             chhhhhc-----cccccccc
Q 047660          119 GWLCRRV-----RSPYKWDR  133 (171)
Q Consensus       119 d~~Q~~~-----~~~~dW~~  133 (171)
                      |++|+++     +++.||..
T Consensus        36 d~iQ~~l~CCG~~~~~Dw~~   55 (110)
T cd03155          36 DELQQEFKCCGSNNYTDWQD   55 (110)
T ss_pred             HHHHHhCcCcCCCChhhhhh
Confidence            7788874     67888864

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and

>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family

Probab=89.51  E-value=0.14  Score=37.34  Aligned_cols=8  Identities=13%  Similarity=-0.101  Sum_probs=5.2

Q ss_pred             CCCCCCCC
Q 047660          164 PLQVIIIN  171 (171)
Q Consensus       164 piqsgCc~  171 (171)
                      +||.+||+
T Consensus        67 ~vP~SCC~   74 (120)
T cd03167          67 SLPASCCI   74 (120)
T ss_pred             CCCcCccC
Confidence            46777773

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=87.77  E-value=1.8  Score=33.78  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 047660           10 PINLVAILLSIPVIGAGIWLA   30 (171)
Q Consensus        10 ~~N~l~~l~Gi~ll~~Giw~~   30 (171)
                      +.+++..++|+++++.|+-.+
T Consensus         6 i~~i~~iilgilli~~gI~~L   26 (191)
T PF04156_consen    6 IISIILIILGILLIASGIAAL   26 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            456666677777666666554

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family

Probab=86.76  E-value=0.26  Score=34.22  Aligned_cols=15  Identities=7%  Similarity=0.379  Sum_probs=10.4

Q ss_pred             chhhhhc-----cccccccc
Q 047660          119 GWLCRRV-----RSPYKWDR  133 (171)
Q Consensus       119 d~~Q~~~-----~~~~dW~~  133 (171)
                      |.+|+++     ++++||..
T Consensus        33 d~iQ~~l~CCG~~~~~Dw~~   52 (99)
T cd03166          33 DRMQKDLKCCGANNYTDWEN   52 (99)
T ss_pred             HHHHHHhcccCCCChhhhhc
Confidence            6677763     67788854

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.

>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins

Probab=85.27  E-value=2.3  Score=31.35  Aligned_cols=47  Identities=19%  Similarity=0.367  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHH
Q 047660           10 PINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVAL   57 (171)
Q Consensus        10 ~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~   57 (171)
                      ++-++.+++|.+++.+|..+....-. ...--.++++++|+++++=|+
T Consensus        45 ~la~~Lli~G~~li~~g~l~~~~~i~-~~~~~~~~llilG~L~fIPG~   91 (115)
T PF05915_consen   45 ALAVFLLIFGTVLIIIGLLLFFGHID-GDRDRGWALLILGILCFIPGF   91 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccC-CCCcccchHHHHHHHHHhccH
Confidence            44466778899999999887765311 111223578889998887554

The function of this currently unknown.

>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family

Probab=84.95  E-value=0.32  Score=35.12  Aligned_cols=40  Identities=13%  Similarity=0.227  Sum_probs=20.5

Q ss_pred             eeeecccccc--CCccccccccc-ccc---cchhhhhc-----cccccccc
Q 047660           94 MVMIKGSGYL--APSRAYLEYRL-DDF---SGWLCRRV-----RSPYKWDR  133 (171)
Q Consensus        94 ~~~~~~~~~~--~~~~~i~~y~~-~~~---~d~~Q~~~-----~~~~dW~~  133 (171)
                      +++++++...  .+.+.+++|.. .++   .|.+|+++     +++.||..
T Consensus         2 v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~d~lQ~~l~CCG~~~~~Dw~~   52 (119)
T cd03158           2 IFSNQTIDLLEENIRKAIVHYYDDLDLQNIIDFVQKEFKCCGGDDYRDWSK   52 (119)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHccCCCCCChhhccc
Confidence            4455544332  22345555542 111   37777773     67788864

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.

>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed

Probab=83.12  E-value=19  Score=28.91  Aligned_cols=54  Identities=13%  Similarity=0.050  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccchhhh-hhHHHHHHHHHHHHHHHHhhh
Q 047660            8 IRPINLVAILLSIPVIGAGIWLATEADNSCVKL-LQWPVIILGILILVVALARFI   61 (171)
Q Consensus         8 l~~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~-~~~~~i~~G~~i~~is~lGc~   61 (171)
                      +-++-.++.++|..+..+|..-+.+-+....+. .....-.+|+.++++|.++..
T Consensus         5 ~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~   59 (197)
T PRK12585          5 IEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYF   59 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHH
Confidence            344556777888888877777666533222222 111233456555556655543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
1g8q_A	90	CD81 antigen, extracellular domain; alpha helical,	82.59

>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A

Probab=82.59  E-value=0.093  Score=34.79  Aligned_cols=14  Identities=0%  Similarity=-0.137  Sum_probs=9.7

Q ss_pred             chhhhhc-----ccccccc
Q 047660          119 GWLCRRV-----RSPYKWD  132 (171)
Q Consensus       119 d~~Q~~~-----~~~~dW~  132 (171)
                      |.+|+.+     ++++||.
T Consensus        36 d~iQ~~l~CCG~~~~~Dw~   54 (90)
T 1g8q_A           36 KTFHETLDCCGSSTLTALT   54 (90)
T ss_dssp             HHHHHHHTCCSCTTCGGGH
T ss_pred             HHHHHhhcCCCCCChhhhc
Confidence            6677763     6777775

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00