Citrus Sinensis ID: 047693

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MGLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGILLKP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEEEccccccccccccccccccEEEEEEccEEEEEEEEcccEEEEEEEcHHHHHHHHHccccEEEEccccccccccccccccEEccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHcccHccEEEEEEEEEEEEEcccccHHHcccccccccccEEEEEEcccEEEEEEEccccEEEEEccHHHHHHHHHHccccEEEcccccccccccccHcHHHcHHHHHHccHccHcccc
Coil and Loop (DISEMBL)
MGLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTlyytvngkigdlgqatpvfpnakvelqcggnvnstavtsesgsfsivlDPVQIVVSSLLNDCClvlktplatcnsnlpsagdlfspltiVGNTLLGILLKP
Flexible Loop (DISEMBL)
MGLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLpsagdlfspltIVGNTLLGILLKP
Low Complexity Region (SEG)
MGLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGILLKP
Disordered region (IsUnstruct)
****SLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGILL**
Disordered Region (DISOPRED)
***KSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGILL**
Disordered Region (DISEMBL)
MGLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGILLKP
Disordered Region (DISPRO)
*GLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGILLKP
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGILLKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q56S59	150	Phylloplanin OS=Nicotiana	N/A	no	0.851	0.8	0.384	3e-12

>sp|Q56S59|PHYLL_TOBAC Phylloplanin OS=Nicotiana tabacum PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 80/130 (61%), Gaps = 10/130 (7%)

Query: 7   VYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATP-VFPNAKVE 65
           ++ + L+AA+ A  A A   ++ TL+   HI G ++ +VNG +  +   +P VFPNA V+
Sbjct: 6   IFLIFLLAALIATPA-AFAILVPTLVS-THISGLVFCSVNGNLDVINGLSPQVFPNASVQ 63

Query: 66  LQCGG-NVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLF 124
           L+CG  NV S+ +T+ SG+FS+ ++   ++      +C LV+ TPL+TCN+ L S G L 
Sbjct: 64  LRCGATNVISSTITNGSGAFSLAVNTFPLL------NCNLVVATPLSTCNATLQSVGRLA 117

Query: 125 SPLTIVGNTL 134
           S L +V  TL
Sbjct: 118 SSLRLVNITL 127

Inhibits spore germination and leaf infection by fungal pathogens.
Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
225431741	156	PREDICTED: phylloplanin [Vitis vinifera]	0.808	0.730	0.6	6e-29
255551791	152	Phylloplanin precursor, putative [Ricinu	0.978	0.907	0.550	4e-28
224110416	156	predicted protein [Populus trichocarpa]	0.992	0.897	0.553	3e-27
449433411	148	PREDICTED: phylloplanin-like [Cucumis sa	0.858	0.817	0.524	2e-25
297830270	185	hypothetical protein ARALYDRAFT_318437 [	0.751	0.572	0.463	5e-19
30684182	180	Pollen Ole e 1 allergen and extensin fam	0.730	0.572	0.485	1e-18
11994620	211	unnamed protein product [Arabidopsis tha	0.730	0.488	0.485	1e-18
388509496	153	unknown [Lotus japonicus]	0.950	0.875	0.445	3e-16
356529467	156	PREDICTED: phylloplanin-like [Glycine ma	0.957	0.865	0.424	3e-16
255645624	156	unknown [Glycine max]	0.957	0.865	0.417	1e-15

>gi|225431741|ref|XP_002269079.1| PREDICTED: phylloplanin [Vitis vinifera] gi|296083359|emb|CBI22995.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 89/115 (77%), Gaps = 1/115 (0%)

Query: 25  GGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCG-GNVNSTAVTSESGS 83
           G +IG++L LI I+G L+ T NG +G  G ATPVFPNA V+LQCG GNV S+A T+ +G 
Sbjct: 26  GNIIGSILDLIRIQGNLFCTANGNMGVNGTATPVFPNAPVQLQCGAGNVISSATTNSAGL 85

Query: 84  FSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGIL 138
           FSI+LDP+Q ++SSLL +C LV+ TPL+TCNS LPS+G L SPL ++GNTL G L
Sbjct: 86  FSILLDPLQFLLSSLLTNCNLVVNTPLSTCNSGLPSSGALLSPLRLIGNTLQGPL 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551791|ref|XP_002516941.1| Phylloplanin precursor, putative [Ricinus communis] gi|223544029|gb|EEF45555.1| Phylloplanin precursor, putative [Ricinus communis]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 101/138 (73%)

Query: 1   MGLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFP 60
           M LKS +    LVA M A + +AQ G++G LLGLI I+GT++ T NG +G  G ATPVFP
Sbjct: 1   MALKSFLLVFFLVAVMAATITEAQLGIVGGLLGLIRIQGTVFCTANGNMGANGTATPVFP 60

Query: 61  NAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSA 120
           NA+V+L CG  + STA T+  G FSIVLDP+Q VVSS+L+ C L + TPL+ C+S+LP+ 
Sbjct: 61  NAQVQLMCGSQMISTATTNRFGIFSIVLDPLQYVVSSVLSGCFLKVGTPLSNCDSSLPTG 120

Query: 121 GDLFSPLTIVGNTLLGIL 138
           G L SPL +VG+T++GIL
Sbjct: 121 GLLQSPLELVGSTIVGIL 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110416|ref|XP_002315514.1| predicted protein [Populus trichocarpa] gi|222864554|gb|EEF01685.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 102/141 (72%), Gaps = 1/141 (0%)

Query: 1   MGLKSLVYAVILVAA-MGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVF 59
           M  KS ++  ++ AA + A +A+AQ G+IG LLGLI I+GTL+ T NG +G  G ATPVF
Sbjct: 1   MAFKSFLFVSLVGAAILAAPVAEAQLGLIGGLLGLIRIQGTLFCTANGNMGANGTATPVF 60

Query: 60  PNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPS 119
           PNA V+LQCGGNV ST+ T+ SG FSI+LDP+  ++SSLL +C L + TPL +CNS+LP+
Sbjct: 61  PNALVQLQCGGNVVSTSTTNGSGIFSILLDPLNYILSSLLTNCNLKVDTPLTSCNSSLPA 120

Query: 120 AGDLFSPLTIVGNTLLGILLK 140
            G L S L  +GNT LG LL 
Sbjct: 121 LGGLLSSLQFIGNTPLGALLS 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433411|ref|XP_004134491.1| PREDICTED: phylloplanin-like [Cucumis sativus] gi|449522899|ref|XP_004168463.1| PREDICTED: phylloplanin-like [Cucumis sativus]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 91/124 (73%), Gaps = 3/124 (2%)

Query: 11  ILVAAMGA--LMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQC 68
           ++  A+G+  LMA+AQ  +IG+LL LI+I+GT++ T +G IG    +TPVFPNA V+LQC
Sbjct: 1   MVFGALGSAPLMAEAQFNIIGSLLKLINIQGTVFCTADGNIGTNATSTPVFPNALVQLQC 60

Query: 69  G-GNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPL 127
           G GN+ ST  T+  G FS+ L+PVQ V+SSLL++C LV+KTP++ CN+ LPS G L S L
Sbjct: 61  GNGNIVSTTTTNNGGIFSMFLNPVQFVLSSLLSNCNLVVKTPISDCNATLPSTGFLTSSL 120

Query: 128 TIVG 131
             +G
Sbjct: 121 QFLG 124

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830270|ref|XP_002883017.1| hypothetical protein ARALYDRAFT_318437 [Arabidopsis lyrata subsp. lyrata] gi|297328857|gb|EFH59276.1| hypothetical protein ARALYDRAFT_318437 [Arabidopsis lyrata subsp. lyrata]

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 80/110 (72%), Gaps = 4/110 (3%)

Query: 31  LLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCG--GNVNSTAVTSESGSFSIVL 88
           +L L++I G ++ ++NG +   G +TP F NA V+LQCG    V STA T+ +G F++  
Sbjct: 64  ILNLVNINGVVFCSLNGALN--GTSTPAFANAGVQLQCGRQNRVVSTATTNAAGLFTLPT 121

Query: 89  DPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGIL 138
           D +Q+++S+LL+DC +V+ TPL+TCN+NLPS G+L S L ++GN+L G+L
Sbjct: 122 DTIQMLLSTLLSDCRVVVTTPLSTCNANLPSVGNLVSRLAMIGNSLTGLL 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684182|ref|NP_188288.2| Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] gi|26449715|dbj|BAC41981.1| unknown protein [Arabidopsis thaliana] gi|32189293|gb|AAP75801.1| At3g16660 [Arabidopsis thaliana] gi|332642328|gb|AEE75849.1| Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 77/107 (71%), Gaps = 4/107 (3%)

Query: 34  LIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCG--GNVNSTAVTSESGSFSIVLDPV 91
           L++I G ++ ++NG     G +TP F NA VELQCG    V STA T+ +G FS+  D +
Sbjct: 62  LVNINGVVFCSLNG--APSGTSTPAFANAGVELQCGRQNRVVSTATTNAAGLFSLPTDSI 119

Query: 92  QIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGIL 138
           Q+++S+LL+DC +V+ TPL+TCN+NLPS G+L S L ++GN+L G+L
Sbjct: 120 QMLLSTLLSDCRVVVTTPLSTCNANLPSVGNLVSRLAMIGNSLTGLL 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994620|dbj|BAB02757.1| unnamed protein product [Arabidopsis thaliana]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 77/107 (71%), Gaps = 4/107 (3%)

Query: 34  LIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCG--GNVNSTAVTSESGSFSIVLDPV 91
           L++I G ++ ++NG     G +TP F NA VELQCG    V STA T+ +G FS+  D +
Sbjct: 93  LVNINGVVFCSLNG--APSGTSTPAFANAGVELQCGRQNRVVSTATTNAAGLFSLPTDSI 150

Query: 92  QIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPLTIVGNTLLGIL 138
           Q+++S+LL+DC +V+ TPL+TCN+NLPS G+L S L ++GN+L G+L
Sbjct: 151 QMLLSTLLSDCRVVVTTPLSTCNANLPSVGNLVSRLAMIGNSLTGLL 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509496|gb|AFK42814.1| unknown [Lotus japonicus]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 84/137 (61%), Gaps = 3/137 (2%)

Query: 1   MGLKSLVYAV-ILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVF 59
           M LK L+  + +L+A M    A AQ G++  LLG ++I GT+  T N    +   A P F
Sbjct: 1   MTLKHLIMMISLLIAVMAIPQAHAQLGILNDLLGSVNIRGTVSCTSNDN--NAAAAIPGF 58

Query: 60  PNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPS 119
            NA+V+LQCG  V S A T   G FS++++P+   +SSLL+ C LV+ TPL+ CNSNLPS
Sbjct: 59  SNAQVQLQCGEKVFSDATTDGDGMFSMMVNPLLYDLSSLLSGCNLVIPTPLSKCNSNLPS 118

Query: 120 AGDLFSPLTIVGNTLLG 136
            G L S L  VG + +G
Sbjct: 119 IGGLISTLRYVGLSHVG 135

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529467|ref|XP_003533313.1| PREDICTED: phylloplanin-like [Glycine max]

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 89/139 (64%), Gaps = 4/139 (2%)

Query: 1   MGLKSLVYAVILVAAMGALMAD--AQGGVIGTLLGLI-HIEGTLYYTVNGKIGDLGQATP 57
           M LK  +   +L+AAM   +    AQ G++  LLG + +I+GT++ T    +G  G + P
Sbjct: 1   MTLKYFI-TFLLIAAMAINIPQTLAQLGILSGLLGSVSNIQGTVFCTSKDNMGVKGASVP 59

Query: 58  VFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNL 117
           VFPNA+V+L CGG   S A T++ G+FS+++DP+ + ++SLL+ C LV+ TPL+ CN+ L
Sbjct: 60  VFPNAQVQLVCGGKELSNAKTNDDGTFSMMMDPLLLDLASLLSGCNLVVATPLSNCNAKL 119

Query: 118 PSAGDLFSPLTIVGNTLLG 136
           PS G L S L   G T +G
Sbjct: 120 PSTGGLISTLNFAGITSVG 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645624|gb|ACU23306.1| unknown [Glycine max]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 88/139 (63%), Gaps = 4/139 (2%)

Query: 1   MGLKSLVYAVILVAAMGALMAD--AQGGVIGTLLGLI-HIEGTLYYTVNGKIGDLGQATP 57
           M LK  +   +L+AAM   +    AQ G++  LLG + +I+GT++ T    +G  G + P
Sbjct: 1   MTLKYFI-TFLLIAAMAINIPQTLAQLGILSGLLGSVSNIQGTVFCTSKDNMGVKGASAP 59

Query: 58  VFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNL 117
           VFPNA+V+L CGG   S A T++ G+FS+++DP+ + ++SLL+ C LV+ TPL+ CN+ L
Sbjct: 60  VFPNAQVQLVCGGKELSNAKTNDDGTFSMMMDPLLLDLASLLSGCNLVVATPLSNCNAKL 119

Query: 118 PSAGDLFSPLTIVGNTLLG 136
           P  G L S L   G T +G
Sbjct: 120 PFTGGLISTLNFAGITSVG 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2089313	180	AT3G16660 "AT3G16660" [Arabido	0.914	0.716	0.453	6.6e-26
TAIR|locus:2089328	154	AT3G16670 "AT3G16670" [Arabido	0.929	0.850	0.366	4.6e-18
TAIR|locus:2175284	154	AT5G05020 [Arabidopsis thalian	0.851	0.779	0.303	6.1e-07
TAIR|locus:2040262	148	AT2G41390 "AT2G41390" [Arabido	0.879	0.837	0.288	1.1e-05

TAIR|locus:2089313 AT3G16660 "AT3G16660" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 63/139 (45%), Positives = 94/139 (67%)

Query:     2 GLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPN 61
             GL  L+    LV  +G L+    GG++G +L L++I G ++ ++NG     G +TP F N
Sbjct:    36 GLGGLIGG--LVGGLGGLV----GGLVGGILNLVNINGVVFCSLNG--APSGTSTPAFAN 87

Query:    62 AKVELQCG--GNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPS 119
             A VELQCG    V STA T+ +G FS+  D +Q+++S+LL+DC +V+ TPL+TCN+NLPS
Sbjct:    88 AGVELQCGRQNRVVSTATTNAAGLFSLPTDSIQMLLSTLLSDCRVVVTTPLSTCNANLPS 147

Query:   120 AGDLFSPLTIVGNTLLGIL 138
              G+L S L ++GN+L G+L
Sbjct:   148 VGNLVSRLAMIGNSLTGLL 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089328 AT3G16670 "AT3G16670" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 51/139 (36%), Positives = 87/139 (62%)

Query:     4 KSLVYAVILVAAMGAL-MADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNA 62
             K + ++++L+  +    MA+AQ G+ G  + +I+  G L+ T+NG   + G   P F NA
Sbjct:     6 KHITFSLVLLCLIVVSPMANAQSGLGGINVPIIN--GVLFCTINGAPLN-GTPAPAFANA 62

Query:    63 KVELQCGGNVN---STAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPS 119
              V+LQCG N+N   +  +T+ +G F+   + +QI + +LLNDC +V+ TP ++C++ LPS
Sbjct:    63 VVQLQCG-NLNRVVAETITNIAGLFTFSTNGIQISLPTLLNDCRIVVPTPRSSCDATLPS 121

Query:   120 AGDLFSPLTIVGNTLLGIL 138
              G L S L +VG+ + G+L
Sbjct:   122 TGQLISQLNLVGSIVSGLL 140

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2175284 AT5G05020 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 40/132 (30%), Positives = 64/132 (48%)

Query:     3 LKSLVYAVILVAAMGALMADAQG-GVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPN 61
             + S++  +++  AM  L   + G  + G  LG   I G L   ++G       A PV   
Sbjct:     8 ITSILLILLMAIAMALLSTSSHGLSIAGLSLGQGQIYGVLRCNISGD----PNAPPV-SG 62

Query:    62 AKVELQCGGNVNST---AVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLP 118
             A V L+C G+ N+T   AVT   G+F ++L  VQ V+ S  + C L+   P   C+  +P
Sbjct:    63 APVYLKCDGS-NTTIADAVTKPDGTFRVLLSAVQTVLISP-SSCYLLANLPGGNCSIYVP 120

Query:   119 SAGDLFSPLTIV 130
               G L +  T++
Sbjct:   121 D-GALTATFTLL 131

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2040262 AT2G41390 "AT2G41390" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 41/142 (28%), Positives = 72/142 (50%)

Query:     4 KSLVY--AVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPN 61
             KS V+  +++L+A++ ++    Q  + G  +  + I G +Y +++G       A PV  N
Sbjct:     3 KSNVFLLSILLMASLFSISHAFQ--LWGYAIDRVSIRGVVYCSLDGD----PSAPPV-SN 55

Query:    62 AKVELQCGGNVNST---AVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLP 118
             A V ++C G  NST   AVT++ G F++V +P      +  N C + +  P  +C    P
Sbjct:    56 ATVYIECPGGSNSTLAQAVTNQVGVFTLVFNPGNTTFVNP-NKCDIKVNLPTNSCFI-YP 113

Query:   119 SAGDLFSPLTIVGNTLLGILLK 140
               G L + +    N LL I+L+
Sbjct:   114 PGGVLIASV----NELLSIILQ 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       141   0.00091  102 3  11 22  0.45    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  517 (55 KB)
  Total size of DFA:  107 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.18u 0.09s 14.27t   Elapsed:  00:00:00
  Total cpu time:  14.18u 0.09s 14.27t   Elapsed:  00:00:00
  Start:  Mon May 20 15:35:42 2013   End:  Mon May 20 15:35:42 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam01190	95	pfam01190, Pollen_Ole_e_I, Pollen proteins Ole e I	6e-09

>gnl|CDD|216353 pfam01190, Pollen_Ole_e_I, Pollen proteins Ole e I like

 Score = 49.8 bits (119), Expect = 6e-09
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 37  IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG-----NVNSTAVTSESGSFSIVLDPV 91
           +EG++Y       G    A P  P AKV+++C         ++ AVT E G F + L   
Sbjct: 1   VEGSVYCDTCRASGFELSAYP-LPGAKVKIECKDGDGRVVTSAEAVTDEKGYFKVELPGD 59

Query: 92  QIVVSSLLNDCCLVL-KTPLATCNSNLPSAGD 122
              ++ L + C   L  +P + C++     G 
Sbjct: 60  PSSLTHLESACRAKLVSSPDSACSAPTNGNGT 91

Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF01190	97	Pollen_Ole_e_I: Pollen proteins Ole e I like; Inte	99.84
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	96.2
PF11974	97	MG1: Alpha-2-macroglobulin MG1 domain; InterPro: I	95.62
PF13715	88	DUF4480: Domain of unknown function (DUF4480)	94.01
PRK15036	137	hydroxyisourate hydrolase; Provisional	91.79
PF01060	80	DUF290: Transthyretin-like family; InterPro: IPR00	91.57
PF08400	134	phage_tail_N: Prophage tail fibre N-terminal; Inte	90.62
PF07210	85	DUF1416: Protein of unknown function (DUF1416); In	90.25
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	88.98
PF10670	215	DUF4198: Domain of unknown function (DUF4198)	85.23
cd03866	376	M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM	85.06
PF00775	183	Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th	83.95
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	83.82

>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=99.84  E-value=8.2e-21  Score=134.79  Aligned_cols=85  Identities=29%  Similarity=0.447  Sum_probs=73.6

Q ss_pred             EEEEEEccCCCccccccccCCCcCCCeEEEEeCC-----eeeeeEEeCCceeEEEEeCcch-hhhhccCCCcEEE-eccC
Q 047693           37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG-----NVNSTAVTSESGSFSIVLDPVQ-IVVSSLLNDCCLV-LKTP  109 (141)
Q Consensus        37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g-----~~~~eAtTd~~G~F~i~v~~~~-~~l~~l~~~C~vV-V~SP  109 (141)
                      |+|+|||+.|+. +|+ ..+++||||+|+|+|++     .+..+++||++|+|+|.++.+. .+.....+.|+++ +.+|
T Consensus         1 V~G~V~C~~C~~-~~~-~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~~~~~~~~~~~~~C~v~l~~sp   78 (97)
T PF01190_consen    1 VEGVVYCDDCSS-GFS-RAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPSDPGSSSPHLSSSCRVKLVSSP   78 (97)
T ss_pred             CEEEEEeCCCCC-Ccc-ccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecCccccccCCCCCCcEEEEeCCC
Confidence            799999999999 788 88999999999999998     4899999999999999998651 1113457999998 7999


Q ss_pred             ccccCcCCCCCCce
Q 047693          110 LATCNSNLPSAGDL  123 (141)
Q Consensus       110 l~~Cn~~Lp~~g~L  123 (141)
                      +..|+.+.+.++++
T Consensus        79 ~~~C~~~~~~~~G~   92 (97)
T PF01190_consen   79 DPSCNVPTNSNGGR   92 (97)
T ss_pred             cCcCCCCcCCCCCc
Confidence            99999999888654

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=96.20  E-value=0.0097  Score=39.45  Aligned_cols=45  Identities=33%  Similarity=0.411  Sum_probs=30.4

Q ss_pred             EEEEEEccCCCccccccccCCCcCCCeEEEEeCC-eeeeeEEeCCceeEEEE-eCcc
Q 047693           37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG-NVNSTAVTSESGSFSIV-LDPV   91 (141)
Q Consensus        37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g-~~~~eAtTd~~G~F~i~-v~~~   91 (141)
                      |+|+|.=. .+         .+++||.|.|.-.+ ....+++||.+|.|++. +.+.
T Consensus         2 I~G~V~d~-~g---------~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g   48 (82)
T PF13620_consen    2 ISGTVTDA-TG---------QPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPG   48 (82)
T ss_dssp             EEEEEEET-TS---------CBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SE
T ss_pred             EEEEEEcC-CC---------CCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCE
Confidence            78888743 11         47899999999653 57888999999999998 6643

>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin []

Probab=95.62  E-value=0.02  Score=41.17  Aligned_cols=37  Identities=24%  Similarity=0.156  Sum_probs=33.2

Q ss_pred             cccCCCcCCCeEEEE--eCCeeeeeEEeCCceeEEEEeC
Q 047693           53 GQATPVFPNAKVELQ--CGGNVNSTAVTSESGSFSIVLD   89 (141)
Q Consensus        53 t~ssp~fpnA~V~L~--C~g~~~~eAtTd~~G~F~i~v~   89 (141)
                      .....+++||+|+|-  +.++..++++||++|.+++...
T Consensus        22 L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~   60 (97)
T PF11974_consen   22 LSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDST   60 (97)
T ss_pred             CCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCC
Confidence            456789999999998  7789999999999999999886

>PF13715 DUF4480: Domain of unknown function (DUF4480)

Probab=94.01  E-value=0.23  Score=33.46  Aligned_cols=31  Identities=39%  Similarity=0.470  Sum_probs=26.1

Q ss_pred             CCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCc
Q 047693           57 PVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDP   90 (141)
Q Consensus        57 p~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~   90 (141)
                      .+++||.|++.=.+   ..+.||.+|.|+|.+..
T Consensus        13 ~pl~~a~V~~~~~~---~~~~Td~~G~F~i~~~~   43 (88)
T PF13715_consen   13 EPLPGATVYLKNTK---KGTVTDENGRFSIKLPE   43 (88)
T ss_pred             CCccCeEEEEeCCc---ceEEECCCeEEEEEEcC
Confidence            68999999998443   56899999999999763

>PRK15036 hydroxyisourate hydrolase; Provisional

Probab=91.79  E-value=1.2  Score=34.24  Aligned_cols=35  Identities=20%  Similarity=0.141  Sum_probs=27.7

Q ss_pred             cccCCCcCCCeEEEEeCC----eeeeeEEeCCceeEEEE
Q 047693           53 GQATPVFPNAKVELQCGG----NVNSTAVTSESGSFSIV   87 (141)
Q Consensus        53 t~ssp~fpnA~V~L~C~g----~~~~eAtTd~~G~F~i~   87 (141)
                      +..-.+.+|.+|+|+=.+    ....+++||.+|.|+..
T Consensus        36 t~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l   74 (137)
T PRK15036         36 QQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKAL   74 (137)
T ss_pred             CCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccc
Confidence            344468899999998654    46789999999999863

>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []

Probab=91.57  E-value=0.49  Score=32.62  Aligned_cols=35  Identities=20%  Similarity=0.187  Sum_probs=29.8

Q ss_pred             CCcCCCeEEEEeCC-----eeeeeEEeCCceeEEEEeCcc
Q 047693           57 PVFPNAKVELQCGG-----NVNSTAVTSESGSFSIVLDPV   91 (141)
Q Consensus        57 p~fpnA~V~L~C~g-----~~~~eAtTd~~G~F~i~v~~~   91 (141)
                      .+++|++|+|-=.+     .+.++++||.+|.|.|.-...
T Consensus         9 ~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~~~   48 (80)
T PF01060_consen    9 KPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGSTN   48 (80)
T ss_pred             ccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEEcc
Confidence            46899999998885     488999999999999987643

The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space

>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein

Probab=90.62  E-value=1.1  Score=34.78  Aligned_cols=53  Identities=25%  Similarity=0.402  Sum_probs=41.3

Q ss_pred             EEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC-------eeeeeEEeCCceeEEEEeCcchhhhh
Q 047693           34 LIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG-------NVNSTAVTSESGSFSIVLDPVQIVVS   96 (141)
Q Consensus        34 ~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g-------~~~~eAtTd~~G~F~i~v~~~~~~l~   96 (141)
                      ++.|+|+.-   .       ..=.+++|+..+|.=+.       ++++...||..|.|+|++.+-.....
T Consensus         2 sV~ISGvL~---d-------g~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~   61 (134)
T PF08400_consen    2 SVKISGVLK---D-------GAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVT   61 (134)
T ss_pred             eEEEEEEEe---C-------CCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEE
Confidence            467888753   2       23378999999999885       37888999999999999998776443

The characteristics of the protein distribution suggest prophage matches.

>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length

Probab=90.25  E-value=1.4  Score=32.18  Aligned_cols=48  Identities=27%  Similarity=0.335  Sum_probs=40.6

Q ss_pred             EEEEEEEEEccCCCccccccccCCCcCCCeEEEEeC-CeeeeeEEeCCceeEEEEeCcch
Q 047693           34 LIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCG-GNVNSTAVTSESGSFSIVLDPVQ   92 (141)
Q Consensus        34 ~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~-g~~~~eAtTd~~G~F~i~v~~~~   92 (141)
                      ..+|+|+|-    +. |      .+.++|.|+|-=. +.+.+|-.|+.+|.|+....+-+
T Consensus         7 e~VItG~V~----~~-G------~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFfaapG~   55 (85)
T PF07210_consen    7 ETVITGRVT----RD-G------EPVGGAYVRLLDSSGEFTAEVVTSATGDFRFFAAPGS   55 (85)
T ss_pred             eEEEEEEEe----cC-C------cCCCCeEEEEEcCCCCeEEEEEecCCccEEEEeCCCc
Confidence            468999997    33 2      5889999999887 57999999999999999998665

Members of this family appear to be Actinomycete specific. The function of this family is unknown.

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=88.98  E-value=0.9  Score=29.40  Aligned_cols=30  Identities=27%  Similarity=0.278  Sum_probs=23.9

Q ss_pred             cCCCeEEEEeCC-eeee--eEEeCCceeEEEEe
Q 047693           59 FPNAKVELQCGG-NVNS--TAVTSESGSFSIVL   88 (141)
Q Consensus        59 fpnA~V~L~C~g-~~~~--eAtTd~~G~F~i~v   88 (141)
                      ++||+++|...+ ....  +.+||++|.|.+.-
T Consensus         1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~   33 (70)
T PF05738_consen    1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKN   33 (70)
T ss_dssp             -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEE
T ss_pred             CCCeEEEEEECCCCEEEEEEEEECCCCEEEEee
Confidence            479999999996 3444  48999999998873

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>PF10670 DUF4198: Domain of unknown function (DUF4198)

Probab=85.23  E-value=1.4  Score=33.73  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=29.3

Q ss_pred             CCcCCCeEEEEeCCee------eeeEEeCCceeEEEEeCc
Q 047693           57 PVFPNAKVELQCGGNV------NSTAVTSESGSFSIVLDP   90 (141)
Q Consensus        57 p~fpnA~V~L~C~g~~------~~eAtTd~~G~F~i~v~~   90 (141)
                      ++++||.|++.-.+.-      ..+.+||.+|.+++.++.
T Consensus       162 kPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~  201 (215)
T PF10670_consen  162 KPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPR  201 (215)
T ss_pred             eEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCC
Confidence            6789999999999743      677999999999999863

>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=85.06  E-value=2.5  Score=37.12  Aligned_cols=45  Identities=27%  Similarity=0.475  Sum_probs=32.4

Q ss_pred             EEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCcch
Q 047693           37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQ   92 (141)
Q Consensus        37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~~~   92 (141)
                      |+|.|. |.  . |      .++|||+|++. +.......+||.+|.|.+.+.+.+
T Consensus       297 I~G~V~-D~--~-g------~pi~~A~V~v~-g~~~~~~~~T~~~G~y~~~l~pG~  341 (376)
T cd03866         297 VKGQVF-DS--N-G------NPIPNAIVEVK-GRKHICPYRTNVNGEYFLLLLPGK  341 (376)
T ss_pred             eEEEEE-CC--C-C------CccCCeEEEEE-cCCceeEEEECCCceEEEecCCee
Confidence            799997 43  2 2      48999999998 322234568999999987765443

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont

>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases

Probab=83.95  E-value=3.8  Score=32.76  Aligned_cols=46  Identities=24%  Similarity=0.283  Sum_probs=31.9

Q ss_pred             ceEEEEEEEEEccCCCccccccccCCCcCCCeEEE-EeCC----------------eeeeeEEeCCceeEEEE
Q 047693           32 LGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVEL-QCGG----------------NVNSTAVTSESGSFSIV   87 (141)
Q Consensus        32 ~~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L-~C~g----------------~~~~eAtTd~~G~F~i~   87 (141)
                      ...+.|+|+|.=..|          .+++||.|++ +|..                ++-+...||.+|.|++.
T Consensus        27 G~~l~l~G~V~D~~g----------~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~   89 (183)
T PF00775_consen   27 GEPLVLHGRVIDTDG----------KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFR   89 (183)
T ss_dssp             S-EEEEEEEEEETTS----------SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEE
T ss_pred             CCEEEEEEEEECCCC----------CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEE
Confidence            346899999993222          3689999999 8873                25567889999999764

Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=83.82  E-value=1  Score=32.85  Aligned_cols=12  Identities=25%  Similarity=0.365  Sum_probs=9.8

Q ss_pred             CchHHHHHHHHH
Q 047693            1 MGLKSLVYAVIL   12 (141)
Q Consensus         1 m~~~~~~~~~ll   12 (141)
                      ||.|+|+++.|+
T Consensus         1 MaSK~~llL~l~   12 (95)
T PF07172_consen    1 MASKAFLLLGLL   12 (95)
T ss_pred             CchhHHHHHHHH
Confidence            999998777666

Some of them may be involved in resistance to environmental stress [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
3irp_X	429	URO-adherence factor A; DEV-IGG fold, cell WALL, h	96.26
3uaf_A	117	TTR-52; beta barrel/sandwich, cell engulfment, sec	94.42
3kcp_A	321	Cellulosomal-scaffolding protein A; dockerin, X-mo	85.59
3e8v_A	82	Possible transglutaminase-family protein; structur	84.53

>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X

Probab=96.26  E-value=0.013  Score=50.99  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=47.4

Q ss_pred             ceEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeC-CeeeeeEEeCCceeEEEEe
Q 047693           32 LGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCG-GNVNSTAVTSESGSFSIVL   88 (141)
Q Consensus        32 ~~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~-g~~~~eAtTd~~G~F~i~v   88 (141)
                      -|...|.|+||-|.++. |+.-..-++++|++|+|.=. |+++++.+||.+|.|.+.-
T Consensus       303 ~G~~~igg~Vw~D~n~n-G~~D~~e~gl~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~  359 (429)
T 3irp_X          303 AGFGGFGGYVWFDKNND-GVQNDSNAAAAGITVNLLDPTGIRLATTTTDITGHYNFDN  359 (429)
T ss_dssp             SCEEEEEEEEEECTTSS-SSSCCSSCBCTTCEEEEECTTSCEEEEEECCTTSEEEEEE
T ss_pred             cceEEEccEEEEeCCCC-CCcCcCCCCcCCeEEEEEcCCCCEEEEEEeCCCCeEEeCC
Confidence            36688999999999888 46566778999999999843 5789999999999999763

>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}

Probab=94.42  E-value=0.16  Score=37.19  Aligned_cols=49  Identities=10%  Similarity=0.198  Sum_probs=37.6

Q ss_pred             eEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeC-------CeeeeeEEeCCceeEEEEeCc
Q 047693           33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCG-------GNVNSTAVTSESGSFSIVLDP   90 (141)
Q Consensus        33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~-------g~~~~eAtTd~~G~F~i~v~~   90 (141)
                      .++.|+|++-|..--+         ...|++|+|-=.       +.+..++.||++|.|.|.-..
T Consensus         3 qsV~V~G~L~C~~~Pa---------~~~~V~V~L~d~~~~~~d~Ddll~~~~Td~~G~F~l~G~~   58 (117)
T 3uaf_A            3 SCLMATGVLKCPTDPE---------AVKKVHIDLWDAAAAAAESDDLMGRTWSDRNGNFQVTGCA   58 (117)
T ss_dssp             EEEEEEEEEECTTCGG---------GGSSCEEEEEEHHHHHTTSCCEEEEEECCTTSEEEEEEEE
T ss_pred             EEEEEEEEEEeCCccC---------CCCCEEEEEEecccccCCchHhheeeEECCCCEEEEEEEe
Confidence            4689999999964322         356888888741       348889999999999998763

>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B

Probab=85.59  E-value=0.55  Score=39.99  Aligned_cols=52  Identities=23%  Similarity=0.155  Sum_probs=37.6

Q ss_pred             ceEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEE-EeC
Q 047693           32 LGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSI-VLD   89 (141)
Q Consensus        32 ~~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i-~v~   89 (141)
                      .....|.|+|.++.=...   ..+...=.|++|+++=.+   ..|+||++|+|+| .+.
T Consensus       155 ~~~~~vsGYi~~~~~~~~---~~~~~~~~G~~V~i~gt~---~sa~tD~~G~f~I~~vp  207 (321)
T 3kcp_A          155 IEGYKVSGYILPDFSFDA---TVAPLVKAGFKVEIVGTE---LYAVTDANGYFEITGVP  207 (321)
T ss_dssp             CSSEEEEEEEEESSCCCT---TTHHHHHSCCEEEETTSS---CEEECCTTSEEEEEEEC
T ss_pred             CCCceEEEEEcccccccc---ccchhccCCcEEEEEecc---ceeEECCCceEEEeccC
Confidence            356789999999854432   233334478999998665   3799999999999 444

>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}

Probab=84.53  E-value=1.2  Score=30.99  Aligned_cols=32  Identities=25%  Similarity=0.222  Sum_probs=27.8

Q ss_pred             CCcCCCeEEEEeCC----eeeeeEEeCCceeEEEEe
Q 047693           57 PVFPNAKVELQCGG----NVNSTAVTSESGSFSIVL   88 (141)
Q Consensus        57 p~fpnA~V~L~C~g----~~~~eAtTd~~G~F~i~v   88 (141)
                      .+.|||+|+.+=-+    ..+.+-.||.+|.|++.+
T Consensus        13 kPV~gA~Vefe~yNyae~~~~~~~~TD~~G~~s~~~   48 (82)
T 3e8v_A           13 QPVADATVEFKVYNYAEFYTVATKHTDRSGHASLTA   48 (82)
T ss_dssp             CBCTTCEEEEEEEETTEEEEEEEEECCTTSEEEEEC
T ss_pred             CCCCCCEEEEEEEEchheeEEEEEEECCCceEEEEE
Confidence            68999999998776    256778999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d1vlfn1	79	Transhydroxylase beta subunit, BthL, C-terminal do	96.72
d1h8la1	79	Carboxypeptidase D C-terminal domain {Crested duck	94.41
d1uwya1	107	Carboxypeptidase M C-terminal domain {Human (Homo	89.88
d3pccm_	236	Protocatechuate-3,4-dioxygenase, beta chain {Pseud	84.72

>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Cna protein B-type domain
family: Cna protein B-type domain
domain: Transhydroxylase beta subunit, BthL, C-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]

Probab=96.72  E-value=0.002  Score=42.16  Aligned_cols=46  Identities=35%  Similarity=0.415  Sum_probs=36.9

Q ss_pred             EEEEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEE-eCcch
Q 047693           35 IHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIV-LDPVQ   92 (141)
Q Consensus        35 ~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~-v~~~~   92 (141)
                      |.|.|+|-      .|      .++++|+|.|.=.++.+.+++||.+|.|++. +.+.+
T Consensus         3 ~~~~gi~~------~G------~~v~gA~V~L~~~~~~v~~t~Td~~G~F~f~~l~~G~   49 (79)
T d1vlfn1           3 YVTAGILV------QG------DCFEGAKVVLKSGGKEVASAETNFFGEFKFDALDNGE   49 (79)
T ss_dssp             EEEEEEEE------TT------EECTTCEEEEEETTEEEEEEECCTTSEEEEEEECSEE
T ss_pred             cEEeeEEE------CC------ccccccEEEEECCCCeEEeeEECCCCcEEEEecCCCC
Confidence            67888773      12      4899999999887888889999999999997 45444

>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase D C-terminal domain
species: Crested duck (Lophonetta specularioides) [TaxId: 8836]

Probab=94.41  E-value=0.046  Score=34.27  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=25.1

Q ss_pred             CCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCcc
Q 047693           56 TPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPV   91 (141)
Q Consensus        56 sp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~~   91 (141)
                      -.+++||.|++.  + ....+.||.+|.|.+.+.+-
T Consensus        12 g~pi~~a~V~v~--~-~~~~~~Td~~G~f~~~l~~G   44 (79)
T d1h8la1          12 GRGILNATISVA--D-INHPVTTYKDGDYWRLLVQG   44 (79)
T ss_dssp             CSBCTTCEEEET--T-EEEEEECCTTSEEEECCCSE
T ss_pred             CCCcCCeEEEEe--C-ccccEEecCCCCEEEEeecc
Confidence            368999999984  3 34457899999998876643

>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase M C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.1  Score=34.39  Aligned_cols=45  Identities=24%  Similarity=0.383  Sum_probs=30.0

Q ss_pred             EEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCcch
Q 047693           37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQ   92 (141)
Q Consensus        37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~~~   92 (141)
                      |+|+|- |.  . |      .+++||.|.++=.. ....++||.+|.|.+.+.+..
T Consensus         2 I~G~V~-D~--~-g------~pi~~A~V~i~~~~-~~~~~~td~~G~f~~~~~~g~   46 (107)
T d1uwya1           2 VKGQVF-DQ--N-G------NPLPNVIVEVQDRK-HICPYRTNKYGEYYLLLLPGS   46 (107)
T ss_dssp             EEEEEE-CT--T-S------CBCCSCEEEETTCC-CSSCCBCCTTCEEEECCCSEE
T ss_pred             cEEEEE-CC--C-C------CCcCcEEEEEEccc-ccceeecchhheeeeecCCcc
Confidence            678885 32  2 1      47999999984222 223467999999988766444

>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, beta chain
species: Pseudomonas putida [TaxId: 303]

Probab=84.72  E-value=1.1  Score=34.29  Aligned_cols=47  Identities=21%  Similarity=0.238  Sum_probs=35.9

Q ss_pred             ceEEEEEEEEEccCCCccccccccCCCcCCCeEEE-EeCC--e-----------------eeeeEEeCCceeEEEEe
Q 047693           32 LGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVEL-QCGG--N-----------------VNSTAVTSESGSFSIVL   88 (141)
Q Consensus        32 ~~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L-~C~g--~-----------------~~~eAtTd~~G~F~i~v   88 (141)
                      ...+.|+|+|.=..|          .+++||.|++ ||..  .                 ..+...||.+|.|++..
T Consensus        75 Ge~i~v~GrV~D~~g----------~Pv~~a~VEIWQana~G~Y~~~~d~~~~~~d~~f~grGr~~Td~~G~y~F~T  141 (236)
T d3pccm_          75 GERIIVAGRVVDQYG----------KPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRT  141 (236)
T ss_dssp             SCEEEEEEEEEETTS----------CBCTTCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEE
T ss_pred             CCEEEEEEEEECCCC----------CCcCCcEEEEEecCCCceECCCccccccccCCccceEEEEEcCCCCeEEEEe
Confidence            456899999983222          3789999999 7773  1                 45667899999999875