Citrus Sinensis ID: 047717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRELETTV
Secondary Structure (PSIPRED)
cEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccEEccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccccEEccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MALIVIcgqpssgksLAATCLAEALKESEAKETVRIIDEASfhldrnqsyasmpaeknlrgvlrsevdrsvskdniIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNkerhekgeaayddKIFEDLVRRfekpdrrnrwdsplfelcpykdaiENSSAAILDAVAYLTKkvdsksrdvkilqptiatqntrfseanSLYELDRATQEVINAVVEAQSKalggpmngislgqglpnisisrsvglpeLRRLRRTFIKltgqtslsgppppsdadsaKRMFVDYLNRELETTV
Flexible Loop (DISEMBL)
malivicgqpssgkslAATCLAEALKESEAKETVRIIDEASfhldrnqsyasmpaeknlrgvlrsevdrsvskdniiivdslnsikgyrYELWCLARAAGIRYCVLYCDLEEDHCRKWNKerhekgeaayddkifedLVRRfekpdrrnrwdsplfeLCPYKDAIENSSAAILDAVAYLTkkvdsksrdvkilqptiatqntrfseANSLYELDRATQEVINAVVEAQSKALGGPMNGISLGQGLPNISISRSVGLPELRRLRRTFIkltgqtslsgppppsdadsaKRMFVDYLNRELETTV
Low Complexity Region (SEG)
MALIVICGQPSSGKSLAATClaealkeseakeTVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGppppsdadsaKRMFVDYLNRELETTV
Disordered region (IsUnstruct)
**LIVICG********AATCLA***********VRIIDE*******************************VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGISLGQGLPNISISRSVGLPELRRLRRTFIKL**********************************
Disordered Region (DISOPRED)
MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKW***********YDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT**************************ANSLYELDRATQEVINAVV****************GQGLPNISISRSVGLPELRRLRRTFIKLTGQT***********DSAKRMFVDYLNRELE***
Disordered Region (DISEMBL)
MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQT***********DSAKRMFVDYLNRELETTV
Disordered Region (DISPRO)
MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRELE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRELETTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q0P457	275	Protein KTI12 homolog OS=	yes	no	0.891	0.981	0.383	2e-49
Q4KLF3	275	Protein KTI12 homolog OS=	N/A	no	0.894	0.985	0.382	8e-47
Q9P7V4	281	Protein kti12 OS=Schizosa	yes	no	0.897	0.967	0.327	1e-39
P34253	313	Protein KTI12 OS=Saccharo	yes	no	0.950	0.920	0.287	6e-28
Q148I5	354	Protein KTI12 homolog OS=	yes	no	0.963	0.824	0.273	3e-23
Q96EK9	354	Protein KTI12 homolog OS=	yes	no	0.353	0.302	0.453	2e-18
Q9D1R2	351	Protein KTI12 homolog OS=	yes	no	0.349	0.301	0.467	8e-16
Q5I0L7	350	Protein KTI12 homolog OS=	yes	no	0.349	0.302	0.431	8e-15
Q58933	248	L-seryl-tRNA(Sec) kinase	yes	no	0.534	0.653	0.257	0.0005

>sp|Q0P457|KTI12_DANRE Protein KTI12 homolog OS=Danio rerio GN=kti12 PE=2 SV=2

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 172/305 (56%), Gaps = 35/305 (11%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           M LI++CG P SGK+  A  L +   ++  ++ V I+ +    +D+N  YA    EKNLR
Sbjct: 1   MPLILMCGYPCSGKTRRAQELRDYFTQNTGRK-VHIVGDEDQGIDKNSVYADSQKEKNLR 59

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
           G LR+EV+R V+KD+I+I+DSLN IKGYRYEL+CL +     +C++Y     D   +WNK
Sbjct: 60  GALRAEVERKVNKDDIVILDSLNYIKGYRYELFCLIKHTQTPHCLVYSLTSADLSSEWNK 119

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFEL-----CPYKDAIENSSAAILDA 175
           +R  + ++ Y  +I + L+ RFE PD RNRWDSPLF +      P++        AI DA
Sbjct: 120 DR--EADSQYTQEILDALILRFEAPDSRNRWDSPLFTIQQDDSLPFE--------AICDA 169

Query: 176 VAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGP 235
              L K+        K   P  +T++   S  N LYELD+ TQ+V+ AV+E+Q  ++ G 
Sbjct: 170 ---LFKR--------KAPPPNQSTKSQPLSSTNFLYELDKVTQDVLMAVLESQKTSVPGD 218

Query: 236 MNGISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYL 295
           +  IS+      I ++RS+ + ELR+LRR FI  T         P  +      MFV YL
Sbjct: 219 L--ISIPGATEKIELTRSLNMVELRKLRRQFISYTKMH------PTENIGQIANMFVQYL 270

Query: 296 NRELE 300
           N+ + 
Sbjct: 271 NKSMH 275

Danio rerio (taxid: 7955)

>sp|Q4KLF3|KTI12_XENLA Protein KTI12 homolog OS=Xenopus laevis GN=kti12 PE=2 SV=1

 Score =  187 bits (475), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 166/303 (54%), Gaps = 32/303 (10%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           M LI++CG P SGKS  +  L E L++S  K  V II +    +DRN  YA    EK+LR
Sbjct: 1   MPLILLCGFPCSGKSSRSQELQEHLEQSGRK--VHIIGDHVLGVDRNAVYADSREEKDLR 58

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
           G LR+ V+R ++K++++I+DSLN IKGYRYEL+CL +     +C+++C    +    WN+
Sbjct: 59  GSLRAAVERKLNKEDVVILDSLNYIKGYRYELFCLIKHVQTPHCLIHCITSPEVSSTWNQ 118

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKD---AIENSSAAILDAVA 177
            R +K E  Y+ +IF+ LV+RFE PD RNRWDSPLF +  +KD    +E    AI     
Sbjct: 119 HR-DKNE-QYNQEIFDSLVQRFEFPDSRNRWDSPLFSV--HKDEKLPLEQICNAIFHR-- 172

Query: 178 YLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMN 237
                        K   P  +TQ    S  N L+ELD+ TQEV+ AV+ AQ  ++ G  +
Sbjct: 173 -------------KAPPPNQSTQMQPLSSTNFLHELDKVTQEVVTAVLSAQKTSIPG--D 217

Query: 238 GISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNR 297
            I +      + + R + + ELRRLR+ FI  T         P  +      MFV YLN+
Sbjct: 218 VIMVPGASEKVQLPRILSMSELRRLRQQFISYTKLH------PNENISQLANMFVQYLNQ 271

Query: 298 ELE 300
            + 
Sbjct: 272 SIH 274

Xenopus laevis (taxid: 8355)

>sp|Q9P7V4|KTI12_SCHPO Protein kti12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kti12 PE=3 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 168/308 (54%), Gaps = 36/308 (11%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKET-------VRIIDEASFHLDRNQSYASM 53
           M LI++ G PSSGK+  +  L +AL++   +         V II++ S ++++ ++Y   
Sbjct: 1   MPLIIVSGYPSSGKTTRSNELKKALEDRIHQNIDNTKDYRVIIINDESLNIEK-ETYRES 59

Query: 54  PAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEED 113
             EK  RG+L S V R +SK   +I D+LN IKG+RY+L+C +++    +CV++  + +D
Sbjct: 60  KNEKAARGLLYSAVQRELSKSTFVICDALNYIKGFRYQLYCESKSMYTTHCVIHVAVPQD 119

Query: 114 HCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAIL 173
            CRK+N  +    E  Y D + E L+ R+E+P+   RWDSPLF +       +++S  I 
Sbjct: 120 LCRKFNSNK----EQPYPDDVLEQLMFRYEEPNGMTRWDSPLFTVLH-----DDASCPID 170

Query: 174 DAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALG 233
           D  + L    + K     +++P         +E N LYELD+ TQ+VI  +++  +    
Sbjct: 171 DIWSVLIHNKNVKPNQATMVKPP--------AEVNYLYELDKTTQDVIMLILDNSNDTSL 222

Query: 234 GPMNGISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVD 293
             + G  L   LP++++S    LP L+RLRR FI++  Q S        + +  K MFV+
Sbjct: 223 ITVPGSKLQIALPSVTVS----LPLLQRLRRQFIQINRQQSY-------NTNVLKEMFVE 271

Query: 294 YLNRELET 301
           +LN + ET
Sbjct: 272 FLNGQFET 279

Elongator-associated factor that is not a structural subunit but rather transiently contacts Elongator, presumably to promote its interaction with elongation competent pol II. Required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P34253|KTI12_YEAST Protein KTI12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KTI12 PE=1 SV=2

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 155/323 (47%), Gaps = 35/323 (10%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKE------SEAKETVRIIDEASFHLDRNQSYASMP 54
           M L++  G P SGK+  A  L + L+       S +K ++    + S  + ++  Y +  
Sbjct: 1   MPLVLFTGYPCSGKTTLAKHLVQLLQSKIDATPSLSKYSITYHSDESLGI-KHSDYITSQ 59

Query: 55  AEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDH 114
            E+ LR  + S V R +SK+ I+IVDSLN IKG+RY+L C  +     +CV+      + 
Sbjct: 60  DERKLRSEIISAVKRDLSKNKIVIVDSLNYIKGFRYQLHCEVKNLSTTFCVIQTLCPPET 119

Query: 115 CRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILD 174
             +WNK  +      ++ ++   L++R+E+P+  NRWDSPLF +   +D I +    I  
Sbjct: 120 IFEWNKTSNPN---PWEPELLNQLIQRYEEPNSSNRWDSPLFAILTPQDNITDYIDDICK 176

Query: 175 AVAYLTKKVDSKSRD---VKILQ-PTIATQNTRFSEANSLYELDRATQEVINAVVE--AQ 228
            V   +K   +   +    K LQ P  AT     S++N +  LD  T ++I  ++     
Sbjct: 177 VVFQTSKSAKNSGHNDPLSKGLQKPNSATVLKPASQSNFIQVLDIETSKIIKTIMNHIKS 236

Query: 229 SKALGGPMNG--ISLGQGLPNIS----------ISRSVGLPELRRLRRTFIKLTGQTSLS 276
             ++GG  NG  + + +G+ +I+          I   V L +L+RL+R FI       + 
Sbjct: 237 LTSIGGVSNGTRVIVSEGITDINDDGCFFVDLPIGNVVTLAQLQRLKRQFINFNKLRDI- 295

Query: 277 GPPPPSDADSAKRMFVDYLNREL 299
                 D D    +F DYLN+ L
Sbjct: 296 ------DQDRIGPLFADYLNKNL 312

Elongator-associated factor that is not a structural subunit but rather transiently contacts Elongator, presumably to promote its interaction with elongation competent pol II. Regulates Elongator complex gamma-toxin target (TOT) activity, resulting in G1 block by Kluyveromyces lactis toxin zymocin (pGKL1 killer toxin), probably through regulation of the Elongator IKI3 subunit phosphorylation state. Required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q148I5|KTI12_BOVIN Protein KTI12 homolog OS=Bos taurus GN=KTI12 PE=2 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 157/362 (43%), Gaps = 70/362 (19%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           M L+V CG P SGKS     L  AL E+E +    + D A    +    Y     EK LR
Sbjct: 1   MPLVVFCGLPYSGKSRRVEELRAAL-EAEGRAVQVVDDAAVLGAEDATVYGDSAREKALR 59

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC------------ 108
           G LR+ V+R +S+ +++I+DSLN IKG+RYEL+CLARAA    C++YC            
Sbjct: 60  GALRAAVERLLSRQDVVILDSLNYIKGFRYELYCLARAARTPICLVYCVRPGSLSGGLRV 119

Query: 109 -----DLEEDHCRKWNKERHEKGE--AAYDDKIFE-----DLVRRFEK--------PDRR 148
                +   +    W     E G   A   D + E      LV R  +        P   
Sbjct: 120 AGAVDNPNRNVSVSWRPRAEEGGRPLAVGTDVLGEPQAVASLVNRRAQAEVPTESEPKEI 179

Query: 149 NRWDSPLFELCPYKDAIENSSAA-----ILDAVAYLTKKVDSKSR--------------- 188
              D P       + + E++S A     +L+A+A   +  DS++R               
Sbjct: 180 RAADLPALVASESEKSAEHASGAFYPPELLEALALRFEAPDSRNRWDRPLFTLVGLEEPL 239

Query: 189 ----------DVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNG 238
                     + +   P  +TQ+   +  + L++LD+ T +V+  ++EAQ  A+ G +  
Sbjct: 240 PLAEIRAALFENRAPPPHQSTQSQPLASGSFLHQLDQVTSQVLAGLMEAQKSAVPGDL-- 297

Query: 239 ISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRE 298
           + L     ++  +R + + EL RLRR FI  T   + +      +      MF+ YL++ 
Sbjct: 298 LKLPGTTEHLRFTRPLTMAELSRLRRQFISYTKMHTNN-----ENLPQLANMFLQYLSQS 352

Query: 299 LE 300
           L 
Sbjct: 353 LH 354

Bos taurus (taxid: 9913)

>sp|Q96EK9|KTI12_HUMAN Protein KTI12 homolog OS=Homo sapiens GN=KTI12 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 66/108 (61%), Gaps = 1/108 (0%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           M L+V CG P SGKS  A  L  AL  +E +    + D A    +    Y     EK LR
Sbjct: 1   MPLVVFCGLPYSGKSRRAEELRVALA-AEGRAVYVVDDAAVLGAEDPAVYGDSAREKALR 59

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 108
           G LR+ V+R +S+ +++I+DSLN IKG+RYEL+CLARAA    C++YC
Sbjct: 60  GALRASVERRLSRHDVVILDSLNYIKGFRYELYCLARAARTPLCLVYC 107

Homo sapiens (taxid: 9606)

>sp|Q9D1R2|KTI12_MOUSE Protein KTI12 homolog OS=Mus musculus GN=Kti12 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 72/109 (66%), Gaps = 3/109 (2%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQS-YASMPAEKNL 59
           M L+V+CG PSSGKS     L  AL  SE +  V ++D+AS    ++ + Y     EK L
Sbjct: 1   MPLVVVCGLPSSGKSQRTEELRRALA-SEGR-AVYVVDDASVLGAQDPTVYGDSAGEKAL 58

Query: 60  RGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 108
           R  LR+ V+R +S+ +++I+DS+N IKG+RYEL+CLARAA    C+LYC
Sbjct: 59  RAALRAAVERRLSRQDVVILDSVNYIKGFRYELYCLARAARTPLCLLYC 107

Mus musculus (taxid: 10090)

>sp|Q5I0L7|KTI12_RAT Protein KTI12 homolog OS=Rattus norvegicus GN=Kti12 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 3/109 (2%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQS-YASMPAEKNL 59
           M L+V+CG PSSGKS     L  AL  +    +V ++D+AS    ++ + Y     EK L
Sbjct: 1   MPLVVVCGLPSSGKSRRTEELRRAL--TGEGRSVYVVDDASVLGAQDSTVYGDSAGEKAL 58

Query: 60  RGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 108
           R  LR+ V+R +S+ +++I+DS+N IKG+RYEL+CLARA     C++YC
Sbjct: 59  RAALRAAVERRLSRQDVVILDSMNYIKGFRYELYCLARAVRTPLCLVYC 107

Rattus norvegicus (taxid: 10116)

>sp|Q58933|PSTK_METJA L-seryl-tRNA(Sec) kinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pstK PE=1 SV=2

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 9/171 (5%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGV 62
           LI++ G P  GKS  +  LA+ L    +K  + +I   S  +  +        E+ ++  
Sbjct: 2   LIILTGLPGVGKSTFSKNLAKIL----SKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKS 57

Query: 63  LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER 122
               +D S  K+  +IVD  N     R +L  +A+     Y ++Y     D   + N ER
Sbjct: 58  TYRLID-SALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER 116

Query: 123 HEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAIL 173
            EK       K++E    +F++P ++ +WD P   +   KD   N  A  L
Sbjct: 117 GEKIPNEVIKKMYE----KFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKL 163

Specifically phosphorylates seryl-tRNA(Sec) to O-phosphoseryl-tRNA(Sec), an activated intermediate for selenocysteine biosynthesis.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
224098960	302	predicted protein [Populus trichocarpa]	0.996	1.0	0.841	1e-149
255542062	302	Protein KTI12, putative [Ricinus communi	0.993	0.996	0.847	1e-149
225423527	302	PREDICTED: protein KTI12 homolog [Vitis	0.986	0.990	0.836	1e-147
356520410	302	PREDICTED: protein KTI12 homolog [Glycin	0.996	1.0	0.817	1e-147
449452863	300	PREDICTED: protein KTI12 homolog isoform	0.990	1.0	0.831	1e-145
297849794	302	DRL1 protein [Arabidopsis lyrata subsp.	0.980	0.983	0.755	1e-132
23504265	302	DRL1 protein [Arabidopsis thaliana]	0.980	0.983	0.755	1e-131
15222972	302	protein KTI12-like protein [Arabidopsis	0.980	0.983	0.752	1e-131
116782949	304	unknown [Picea sitchensis]	0.996	0.993	0.736	1e-130
388516459	305	unknown [Medicago truncatula]	0.996	0.990	0.763	1e-129

>gi|224098960|ref|XP_002311334.1| predicted protein [Populus trichocarpa] gi|222851154|gb|EEE88701.1| predicted protein [Populus trichocarpa]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/302 (84%), Positives = 278/302 (92%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           MAL+VICGQP SGKS AA  LAEALKESE+  T+RIIDEASFHLDRNQSYA+M AEKNLR
Sbjct: 1   MALVVICGQPCSGKSTAAFFLAEALKESESNSTIRIIDEASFHLDRNQSYANMTAEKNLR 60

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
           G LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRY VL+CD+EE  C+KWN+
Sbjct: 61  GALRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYIVLFCDVEETQCKKWNE 120

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
           +R EK EA YDD IFEDL RRFE+PDRRNRWDSPLFEL PYKD I+ SSAAI+DAV+YLT
Sbjct: 121 QRMEKCEATYDDTIFEDLARRFERPDRRNRWDSPLFELSPYKDGIQKSSAAIVDAVSYLT 180

Query: 181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
           KKVDSK+RDVKIL PTIATQ+TRFSEANSLYELDRATQEV N +VEAQS+++GGP+NGIS
Sbjct: 181 KKVDSKTRDVKILHPTIATQSTRFSEANSLYELDRATQEVTNVIVEAQSQSIGGPLNGIS 240

Query: 241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRELE 300
           LGQGLP +++SRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDA+SAKRMFVDYLNREL 
Sbjct: 241 LGQGLPTLNMSRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDAESAKRMFVDYLNRELG 300

Query: 301 TT 302
           TT
Sbjct: 301 TT 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542062|ref|XP_002512095.1| Protein KTI12, putative [Ricinus communis] gi|223549275|gb|EEF50764.1| Protein KTI12, putative [Ricinus communis]

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/301 (84%), Positives = 278/301 (92%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           MAL+VICGQP SGKSLAA CLA+ALKES++K T RIIDEASFHLDRNQSYA+MPAEKNLR
Sbjct: 1   MALVVICGQPCSGKSLAAVCLAKALKESDSKLTTRIIDEASFHLDRNQSYANMPAEKNLR 60

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
           GVLRSEVDRSVS+D+IIIVDSLNSIKGYRYELWCLARAAGIRYCVL+CD++E  CRKWN+
Sbjct: 61  GVLRSEVDRSVSRDSIIIVDSLNSIKGYRYELWCLARAAGIRYCVLFCDVQETQCRKWNE 120

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
           +R EK E AYDD IFEDLVRRFE+PD+RNRWDSPLFEL P +D IE  SAAILDAV+YLT
Sbjct: 121 QRREKEEGAYDDAIFEDLVRRFERPDKRNRWDSPLFELRPSEDGIEKCSAAILDAVSYLT 180

Query: 181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
           K VDSK+RDV+ILQPTIATQNTRFSEANSLYELDRATQEVIN +VEAQS+A+GGP+N IS
Sbjct: 181 KTVDSKTRDVRILQPTIATQNTRFSEANSLYELDRATQEVINVIVEAQSQAVGGPLNVIS 240

Query: 241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRELE 300
           LGQ LP +S SRSVGLPELRRLRRTFIKLTGQTSLSG PPPSDADSAKRMFVDYLNREL 
Sbjct: 241 LGQDLPTLSTSRSVGLPELRRLRRTFIKLTGQTSLSGRPPPSDADSAKRMFVDYLNRELG 300

Query: 301 T 301
           T
Sbjct: 301 T 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423527|ref|XP_002271192.1| PREDICTED: protein KTI12 homolog [Vitis vinifera]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/299 (83%), Positives = 277/299 (92%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           MAL+VICGQP SGKS AA CL  ALK+SE+K TVR+IDEASFHLDRNQ YA+M  EK LR
Sbjct: 1   MALVVICGQPCSGKSTAAVCLDGALKDSESKLTVRVIDEASFHLDRNQCYANMTEEKMLR 60

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
           GVLRSEVDRSVSKD+IIIVDSLNSIKGYRYELWCLARAAGIRYCVL+CD+EE HCR WN+
Sbjct: 61  GVLRSEVDRSVSKDSIIIVDSLNSIKGYRYELWCLARAAGIRYCVLFCDVEESHCRTWNE 120

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
           +R E GEA+YDDKIFEDLVRRFEKPDRRNRWDSPLFEL P++D IE SSAAI DAV+YLT
Sbjct: 121 QRSENGEASYDDKIFEDLVRRFEKPDRRNRWDSPLFELWPFRDGIEKSSAAISDAVSYLT 180

Query: 181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
           KK DSK+RD+KILQPTIAT++ RFSEANSLYE+DRATQE+INA+VEAQS+A+GGP+NGIS
Sbjct: 181 KKADSKTRDIKILQPTIATKSARFSEANSLYEMDRATQEIINAIVEAQSQAVGGPVNGIS 240

Query: 241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNREL 299
           LGQGL  I+IS+SVGLPELRRLRRTFIKLTGQTSLSGPPPPSD+DSAKRMFVDYLNREL
Sbjct: 241 LGQGLAPINISKSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDSDSAKRMFVDYLNREL 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520410|ref|XP_003528855.1| PREDICTED: protein KTI12 homolog [Glycine max]

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/302 (81%), Positives = 281/302 (93%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           MAL+V+CGQP SGKS AA CLAEALKESE+K  VRIIDEA FHL+RNQS+A+MP+EKNLR
Sbjct: 1   MALVVMCGQPCSGKSKAAVCLAEALKESESKLQVRIIDEACFHLNRNQSFANMPSEKNLR 60

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
           GVLRSEVDRS+SKD+IIIVDSLN+IKGYRYELWCLARAAGIRYCV++CD+EE  CRKWN+
Sbjct: 61  GVLRSEVDRSLSKDSIIIVDSLNNIKGYRYELWCLARAAGIRYCVVFCDVEETICRKWNE 120

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
           ER EKGEA YDD IFEDL RRFEKPDRRNRWDSPLFEL P+++A E SS A++DAV+YLT
Sbjct: 121 ERREKGEANYDDSIFEDLARRFEKPDRRNRWDSPLFELWPHREATEKSSPAVVDAVSYLT 180

Query: 181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
           KKVDSK+RDVKILQPTIATQ +RFS+ANSLYELD+ATQEV NA+VEAQS+ALGGP+NG+S
Sbjct: 181 KKVDSKTRDVKILQPTIATQTSRFSDANSLYELDKATQEVTNAIVEAQSQALGGPLNGVS 240

Query: 241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRELE 300
           +G+ LP I+ISRSVGLPELRR+RRTFIKLTGQTSLSGPPPPSDADSAKRMF+DYLNREL 
Sbjct: 241 IGKDLPVINISRSVGLPELRRMRRTFIKLTGQTSLSGPPPPSDADSAKRMFIDYLNRELG 300

Query: 301 TT 302
           T+
Sbjct: 301 TS 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452863|ref|XP_004144178.1| PREDICTED: protein KTI12 homolog isoform 1 [Cucumis sativus] gi|449452865|ref|XP_004144179.1| PREDICTED: protein KTI12 homolog isoform 2 [Cucumis sativus] gi|449523870|ref|XP_004168946.1| PREDICTED: protein KTI12 homolog isoform 1 [Cucumis sativus] gi|449523872|ref|XP_004168947.1| PREDICTED: protein KTI12 homolog isoform 2 [Cucumis sativus]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/302 (83%), Positives = 274/302 (90%), Gaps = 2/302 (0%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           MAL+VICGQP SGKS AA CLAEALKES  KE ++IIDE S HLDRNQSYA+MPAEKNLR
Sbjct: 1   MALVVICGQPCSGKSTAALCLAEALKESNVKEAIKIIDETSLHLDRNQSYANMPAEKNLR 60

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
           GVLRSEVDRSVSKD+I+IVDSLNSIKGYRYELWCLAR  GIRYCVLYCD+EE +CRKWN+
Sbjct: 61  GVLRSEVDRSVSKDSIVIVDSLNSIKGYRYELWCLARGTGIRYCVLYCDVEETNCRKWNE 120

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
           ER EK EA+YDDKIFEDL+RRFE+P+ RNRWDSPLFEL P+KD IE SS  ILDAV+YLT
Sbjct: 121 ERREKEEASYDDKIFEDLLRRFERPNSRNRWDSPLFELFPHKDGIEKSSQVILDAVSYLT 180

Query: 181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
           K VDSKSRDVKILQPTIATQ++RFSEANSLYELD+ATQEV+NA+VEAQS  LGGP+N IS
Sbjct: 181 KTVDSKSRDVKILQPTIATQSSRFSEANSLYELDKATQEVVNAIVEAQS--LGGPLNSIS 238

Query: 241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRELE 300
           LGQ LP I ISRSVGLPELRRLRRTFIKLTGQTSLSG PPPSDA+SAKRMFVDYLNREL 
Sbjct: 239 LGQELPTIDISRSVGLPELRRLRRTFIKLTGQTSLSGRPPPSDAESAKRMFVDYLNRELG 298

Query: 301 TT 302
           T+
Sbjct: 299 TS 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849794|ref|XP_002892778.1| DRL1 protein [Arabidopsis lyrata subsp. lyrata] gi|297338620|gb|EFH69037.1| DRL1 protein [Arabidopsis lyrata subsp. lyrata]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/299 (75%), Positives = 263/299 (87%), Gaps = 2/299 (0%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           MAL+VICGQP SGKS+AA  LAEALKESE K+ VRIIDEASFHLDRNQ+Y +MPAEKNLR
Sbjct: 1   MALVVICGQPCSGKSIAAVTLAEALKESETKQNVRIIDEASFHLDRNQNYVNMPAEKNLR 60

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
           G LRS+VDRSVS+ +I+IVDSLNSIKGYRYELWC+ARAAGIRYCV+YCD++E HCR+WNK
Sbjct: 61  GKLRSDVDRSVSRGDIVIVDSLNSIKGYRYELWCIARAAGIRYCVVYCDVDEAHCRQWNK 120

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
           ER ++GE  YDD IFEDLVRRFEKP+RRNRWDSPLFEL P ++ I+ SS+ IL+AV YLT
Sbjct: 121 ERSDRGEDGYDDGIFEDLVRRFEKPERRNRWDSPLFELYPSREVIDKSSSVILEAVTYLT 180

Query: 181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
           K VDSK++DV+ILQP+IATQ  RFSEANSLYELDRATQE+INA+VE QS  LGG ++ ++
Sbjct: 181 KTVDSKTQDVRILQPSIATQAARFSEANSLYELDRATQEIINAIVEQQS--LGGAISRVT 238

Query: 241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNREL 299
           LG  LP I ISR +GLPELRRLRRTF+KL GQ+SLSGPP P+DA+SAKR FVDYLNRE 
Sbjct: 239 LGNELPPIEISRPIGLPELRRLRRTFVKLMGQSSLSGPPLPTDAESAKRRFVDYLNREF 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23504265|emb|CAD21832.1| DRL1 protein [Arabidopsis thaliana]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/299 (75%), Positives = 260/299 (86%), Gaps = 2/299 (0%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           MAL+VICGQP SGKS+AA  LAE LKESE K++VRIIDEASFHLDRNQ+YA+MPAEKNLR
Sbjct: 1   MALVVICGQPCSGKSIAAVTLAETLKESETKQSVRIIDEASFHLDRNQNYANMPAEKNLR 60

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
           G LRS+VDRSVS   I+IVDSLNSIKGYRYELWC+ARAAGIRYCV+YCD++E HCR+WNK
Sbjct: 61  GKLRSDVDRSVSTGEIVIVDSLNSIKGYRYELWCIARAAGIRYCVVYCDVDEAHCRQWNK 120

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
           ER ++GE  YDD IFEDLVRRFEKP+RRNRWDSPLFEL P ++ I+ SS  IL+AV YLT
Sbjct: 121 ERSDRGEDGYDDGIFEDLVRRFEKPERRNRWDSPLFELYPSREVIDKSSPVILEAVTYLT 180

Query: 181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
           K VDSK++DV+ILQP+IATQ  RFSEANSLYELDRATQE+INA+VE QS  LGG ++ ++
Sbjct: 181 KTVDSKTQDVRILQPSIATQAARFSEANSLYELDRATQEIINAIVEQQS--LGGAISRVT 238

Query: 241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNREL 299
           LG  LP I I R +GLPELRRLRRTF+KL GQ+SLSGPP P+DADSAKR FVDYLNRE 
Sbjct: 239 LGNELPPIEICRPIGLPELRRLRRTFVKLMGQSSLSGPPLPTDADSAKRRFVDYLNREF 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222972|ref|NP_172840.1| protein KTI12-like protein [Arabidopsis thaliana] gi|8778407|gb|AAF79415.1|AC068197_25 F16A14.8 [Arabidopsis thaliana] gi|28393388|gb|AAO42118.1| unknown protein [Arabidopsis thaliana] gi|28827568|gb|AAO50628.1| unknown protein [Arabidopsis thaliana] gi|332190957|gb|AEE29078.1| protein KTI12-like protein [Arabidopsis thaliana]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/299 (75%), Positives = 259/299 (86%), Gaps = 2/299 (0%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           MAL+VICGQP SGKS+AA  LAE LKESE K++VRIIDEASFHLDRNQ+YA+MPAEKNLR
Sbjct: 1   MALVVICGQPCSGKSIAAVTLAETLKESETKQSVRIIDEASFHLDRNQNYANMPAEKNLR 60

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
           G LRS+VDRSVS   I+IVDSLNSIKGYRYELWC+ARAAGIRYCV+YCD++E HCR+WNK
Sbjct: 61  GKLRSDVDRSVSTGEIVIVDSLNSIKGYRYELWCIARAAGIRYCVVYCDVDEAHCRQWNK 120

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
           ER ++GE  YDD IFEDLVRRFEKP+RRNRWDSPLFEL P ++ I+ SS  IL+AV YLT
Sbjct: 121 ERSDRGEDGYDDGIFEDLVRRFEKPERRNRWDSPLFELYPSREVIDKSSPVILEAVTYLT 180

Query: 181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
           K VDSK++DV+ILQP+IATQ  RFSEANSLYELDRATQE+INA+VE QS  LG  ++ ++
Sbjct: 181 KTVDSKTQDVRILQPSIATQAARFSEANSLYELDRATQEIINAIVEQQS--LGAAISRVT 238

Query: 241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNREL 299
           LG  LP I I R +GLPELRRLRRTF+KL GQ+SLSGPP P+DADSAKR FVDYLNRE 
Sbjct: 239 LGNELPPIEICRPIGLPELRRLRRTFVKLMGQSSLSGPPLPTDADSAKRRFVDYLNREF 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782949|gb|ABK22737.1| unknown [Picea sitchensis]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/304 (73%), Positives = 259/304 (85%), Gaps = 2/304 (0%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKE--TVRIIDEASFHLDRNQSYASMPAEKN 58
           MAL+++CGQP SGKS AA CL  AL+         VRIIDE S HLDRNQSYA MP+EKN
Sbjct: 1   MALVLVCGQPCSGKSTAAECLRRALEAQHPSSCCNVRIIDEPSLHLDRNQSYADMPSEKN 60

Query: 59  LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKW 118
           LRGVLRSEVDRSVSKD+IIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCD EE +C+ W
Sbjct: 61  LRGVLRSEVDRSVSKDSIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDAEESYCKAW 120

Query: 119 NKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAY 178
           N  R E+GE AY DKI +DLVRRFEKP+RRNRWDSPLFEL P ++ I+ SS+AIL+AV++
Sbjct: 121 NIARQEQGEPAYSDKIVDDLVRRFEKPERRNRWDSPLFELKPAEEQIQESSSAILEAVSF 180

Query: 179 LTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNG 238
           LT+K+DSKSRDV ILQPTIATQN R S+ NSLYELDRATQ+V+NA++++Q++  GG +N 
Sbjct: 181 LTRKIDSKSRDVHILQPTIATQNVRTSDTNSLYELDRATQDVMNALIDSQAQGYGGLVNS 240

Query: 239 ISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRE 298
             LG+GLPNI+I R+VGLPELRRLRRTF+KLTGQ+SLSGPPPP DA SAKRMFVDYLNRE
Sbjct: 241 TVLGEGLPNINIRRAVGLPELRRLRRTFVKLTGQSSLSGPPPPIDAQSAKRMFVDYLNRE 300

Query: 299 LETT 302
           L  T
Sbjct: 301 LGAT 304

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516459|gb|AFK46291.1| unknown [Medicago truncatula]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/305 (76%), Positives = 267/305 (87%), Gaps = 3/305 (0%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKE-SEAKETVRIIDEASFHLDRNQSYASMPAEKNL 59
           MAL+VICGQP SGKS AA  L EALKE SE K  VRIIDEA FHLDRNQSYA+MP+EKNL
Sbjct: 1   MALVVICGQPCSGKSKAALTLVEALKEPSELKYQVRIIDEACFHLDRNQSYANMPSEKNL 60

Query: 60  RGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN 119
           RGVLRSEVDRS+SKD +IIVDSLN+IKGYRYELWCLARAAGIRYCV+YCD+E++ CRKWN
Sbjct: 61  RGVLRSEVDRSLSKDTVIIVDSLNNIKGYRYELWCLARAAGIRYCVVYCDVEDNDCRKWN 120

Query: 120 KERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAIL-DAVAY 178
           +ER EKG   YDD IFEDLVRRFEKP+RRNRWDSPLFEL     +  + SA+++ DAV+Y
Sbjct: 121 QERREKGGDNYDDAIFEDLVRRFEKPERRNRWDSPLFELKSSSSSSLSDSASVVDDAVSY 180

Query: 179 LTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGG-PMN 237
           +TKKVDSK+RDVKILQPTI TQ +RFS+ANSLYELD+ATQEV NA+ EAQS+ LG  P N
Sbjct: 181 ITKKVDSKTRDVKILQPTIVTQTSRFSDANSLYELDKATQEVTNAIAEAQSRDLGMLPAN 240

Query: 238 GISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNR 297
           GIS+G+ LP I++SRSVGLPELRRLRRTF+KLTGQTSLSG PPPS++DSAKRMF+DYLNR
Sbjct: 241 GISIGKDLPPINLSRSVGLPELRRLRRTFMKLTGQTSLSGRPPPSNSDSAKRMFIDYLNR 300

Query: 298 ELETT 302
           EL T+
Sbjct: 301 ELGTS 305

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2014804	302	DRL1 "AT1G13870" [Arabidopsis	0.976	0.980	0.697	1.5e-108
ZFIN|ZDB-GENE-060825-174	275	kti12 "KTI12 homolog, chromati	0.831	0.916	0.381	3.4e-38
MGI|MGI:1923547	351	Kti12 "KTI12 homolog, chromati	0.349	0.301	0.422	1.7e-33
RGD|1591357	350	Kti12 "KTI12 homolog, chromati	0.346	0.3	0.418	2.5e-33
UNIPROTKB|Q96EK9	354	KTI12 "Protein KTI12 homolog"	0.349	0.299	0.422	1.5e-32
UNIPROTKB|Q148I5	354	KTI12 "Protein KTI12 homolog"	0.349	0.299	0.412	8.8e-32
SGD|S000001593	313	KTI12 "Protein that plays a ro	0.953	0.923	0.273	2e-24
POMBASE|SPAC30.02c	281	SPAC30.02c "elongator complex	0.610	0.658	0.326	1.6e-22
UNIPROTKB|G4N519	330	MGG_12920 "Uncharacterized pro	0.950	0.872	0.277	5.5e-22
CGD|CAL0000813	288	KTI12 [Candida albicans (taxid	0.805	0.847	0.289	1.5e-19

TAIR|locus:2014804 DRL1 "AT1G13870" [Arabidopsis thaliana (taxid:3702)]

 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 208/298 (69%), Positives = 240/298 (80%)

Query:     1 MALIVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQSYASMPAEKNLR 60
             MAL+VICGQP SGKS+AA              +VRIIDEASFHLDRNQ+YA+MPAEKNLR
Sbjct:     1 MALVVICGQPCSGKSIAAVTLAETLKESETKQSVRIIDEASFHLDRNQNYANMPAEKNLR 60

Query:    61 GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
             G LRS+VDRSVS   I+IVDSLNSIKGYRYELWC+ARAAGIRYCV+YCD++E HCR+WNK
Sbjct:    61 GKLRSDVDRSVSTGEIVIVDSLNSIKGYRYELWCIARAAGIRYCVVYCDVDEAHCRQWNK 120

Query:   121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
             ER ++GE  YDD IFEDLVRRFEKP+RRNRWDSPLFEL P ++ I+ SS  IL+AV YLT
Sbjct:   121 ERSDRGEDGYDDGIFEDLVRRFEKPERRNRWDSPLFELYPSREVIDKSSPVILEAVTYLT 180

Query:   181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
             K VDSK++DV+ILQP+IATQ  RFSEANSLYELDRATQE+INA+VE QS  LG  ++ ++
Sbjct:   181 KTVDSKTQDVRILQPSIATQAARFSEANSLYELDRATQEIINAIVEQQS--LGAAISRVT 238

Query:   241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGXXXXXXXXXXKRMFVDYLNRE 298
             LG  LP I I R +GLPELRRLRRTF+KL GQ+SLSG          KR FVDYLNRE
Sbjct:   239 LGNELPPIEICRPIGLPELRRLRRTFVKLMGQSSLSGPPLPTDADSAKRRFVDYLNRE 296

GO:0005575 "cellular_component" evidence=ND

GO:0005516 "calmodulin binding" evidence=IDA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0017076 "purine nucleotide binding" evidence=ISS

GO:0006400 "tRNA modification" evidence=IMP

GO:0080178 "5-carbamoylmethyluridine metabolic process" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

ZFIN|ZDB-GENE-060825-174 kti12 "KTI12 homolog, chromatin associated (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 103/270 (38%), Positives = 151/270 (55%)

Query:     1 MALIVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQSYASMPAEKNLR 60
             M LI++CG P SGK+  A               V I+ +    +D+N  YA    EKNLR
Sbjct:     1 MPLILMCGYPCSGKTRRAQ-ELRDYFTQNTGRKVHIVGDEDQGIDKNSVYADSQKEKNLR 59

Query:    61 GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
             G LR+EV+R V+KD+I+I+DSLN IKGYRYEL+CL +     +C++Y     D   +WNK
Sbjct:    60 GALRAEVERKVNKDDIVILDSLNYIKGYRYELFCLIKHTQTPHCLVYSLTSADLSSEWNK 119

Query:   121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
             +R  + ++ Y  +I + L+ RFE PD RNRWDSPLF +    D++     AI DA   L 
Sbjct:   120 DR--EADSQYTQEILDALILRFEAPDSRNRWDSPLFTI-QQDDSLPFE--AICDA---LF 171

Query:   181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
             K+        K   P  +T++   S  N LYELD+ TQ+V+ AV+E+Q  ++ G +  I 
Sbjct:   172 KR--------KAPPPNQSTKSQPLSSTNFLYELDKVTQDVLMAVLESQKTSVPGDLISIP 223

Query:   241 LGQGLPNISISRS-VGLPELRRLRRTFIKL 269
                    ++ S + V L +LRR   ++ K+
Sbjct:   224 GATEKIELTRSLNMVELRKLRRQFISYTKM 253

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1923547 Kti12 "KTI12 homolog, chromatin associated (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 215 (80.7 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
 Identities = 46/109 (42%), Positives = 66/109 (60%)

Query:     1 MALIVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQS-YASMPAEKNL 59
             M L+V+CG PSSGKS                  V ++D+AS    ++ + Y     EK L
Sbjct:     1 MPLVVVCGLPSSGKSQRTE--ELRRALASEGRAVYVVDDASVLGAQDPTVYGDSAGEKAL 58

Query:    60 RGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 108
             R  LR+ V+R +S+ +++I+DS+N IKG+RYEL+CLARAA    C+LYC
Sbjct:    59 RAALRAAVERRLSRQDVVILDSVNYIKGFRYELYCLARAARTPLCLLYC 107

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1591357 Kti12 "KTI12 homolog, chromatin associated (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 2.5e-33, Sum P(2) = 2.5e-33
 Identities = 46/110 (41%), Positives = 65/110 (59%)

Query:     1 MALIVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQS--YASMPAEKN 58
             M L+V+CG PSSGKS                 +V ++D+AS  L    S  Y     EK 
Sbjct:     1 MPLVVVCGLPSSGKSRRTE--ELRRALTGEGRSVYVVDDASV-LGAQDSTVYGDSAGEKA 57

Query:    59 LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 108
             LR  LR+ V+R +S+ +++I+DS+N IKG+RYEL+CLARA     C++YC
Sbjct:    58 LRAALRAAVERRLSRQDVVILDSMNYIKGFRYELYCLARAVRTPLCLVYC 107

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q96EK9 KTI12 "Protein KTI12 homolog" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
 Identities = 46/109 (42%), Positives = 64/109 (58%)

Query:     1 MALIVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEAS-FHLDRNQSYASMPAEKNL 59
             M L+V CG P SGKS  A               V ++D+A+    +    Y     EK L
Sbjct:     1 MPLVVFCGLPYSGKSRRAE--ELRVALAAEGRAVYVVDDAAVLGAEDPAVYGDSAREKAL 58

Query:    60 RGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 108
             RG LR+ V+R +S+ +++I+DSLN IKG+RYEL+CLARAA    C++YC
Sbjct:    59 RGALRASVERRLSRHDVVILDSLNYIKGFRYELYCLARAARTPLCLVYC 107

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q148I5 KTI12 "Protein KTI12 homolog" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 45/109 (41%), Positives = 64/109 (58%)

Query:     1 MALIVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEAS-FHLDRNQSYASMPAEKNL 59
             M L+V CG P SGKS                  V+++D+A+    +    Y     EK L
Sbjct:     1 MPLVVFCGLPYSGKSRRVE--ELRAALEAEGRAVQVVDDAAVLGAEDATVYGDSAREKAL 58

Query:    60 RGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 108
             RG LR+ V+R +S+ +++I+DSLN IKG+RYEL+CLARAA    C++YC
Sbjct:    59 RGALRAAVERLLSRQDVVILDSLNYIKGFRYELYCLARAARTPICLVYC 107

GO:0005524 "ATP binding" evidence=IEA

SGD|S000001593 KTI12 "Protein that plays a role in modification of tRNA wobble nucleosides" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 88/322 (27%), Positives = 145/322 (45%)

Query:     1 MALIVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLD-----RNQSYASMPA 55
             M L++  G P SGK+  A                      ++H D     ++  Y +   
Sbjct:     1 MPLVLFTGYPCSGKTTLAKHLVQLLQSKIDATPSLSKYSITYHSDESLGIKHSDYITSQD 60

Query:    56 EKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHC 115
             E+ LR  + S V R +SK+ I+IVDSLN IKG+RY+L C  +     +CV+      +  
Sbjct:    61 ERKLRSEIISAVKRDLSKNKIVIVDSLNYIKGFRYQLHCEVKNLSTTFCVIQTLCPPETI 120

Query:   116 RKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDA 175
              +WNK  +      ++ ++   L++R+E+P+  NRWDSPLF +   +D I +    I   
Sbjct:   121 FEWNKTSNPN---PWEPELLNQLIQRYEEPNSSNRWDSPLFAILTPQDNITDYIDDICKV 177

Query:   176 VAYLTKKVDSKSRD---VKILQ-PTIATQNTRFSEANSLYELDRATQEVINAVVE--AQS 229
             V   +K   +   +    K LQ P  AT     S++N +  LD  T ++I  ++      
Sbjct:   178 VFQTSKSAKNSGHNDPLSKGLQKPNSATVLKPASQSNFIQVLDIETSKIIKTIMNHIKSL 237

Query:   230 KALGGPMNG--ISLGQGLPNIS----------ISRSVGLPELRRLRRTFIKLTGQTSLSG 277
              ++GG  NG  + + +G+ +I+          I   V L +L+RL+R FI       +  
Sbjct:   238 TSIGGVSNGTRVIVSEGITDINDDGCFFVDLPIGNVVTLAQLQRLKRQFINFNKLRDIDQ 297

Query:   278 XXXXXXXXXXKRMFVDYLNREL 299
                         +F DYLN+ L
Sbjct:   298 DRIGP-------LFADYLNKNL 312

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0002098 "tRNA wobble uridine modification" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016049 "cell growth" evidence=IPI

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IGI

POMBASE|SPAC30.02c SPAC30.02c "elongator complex associated protein Kti2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 66/202 (32%), Positives = 106/202 (52%)

Query:     1 MALIVICGQPSSGKSL-------AATCXXXXXXXXXXXXTVRIIDEASFHLDRNQSYASM 53
             M LI++ G PSSGK+        A                V II++ S ++++ ++Y   
Sbjct:     1 MPLIIVSGYPSSGKTTRSNELKKALEDRIHQNIDNTKDYRVIIINDESLNIEK-ETYRES 59

Query:    54 PAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEED 113
               EK  RG+L S V R +SK   +I D+LN IKG+RY+L+C +++    +CV++  + +D
Sbjct:    60 KNEKAARGLLYSAVQRELSKSTFVICDALNYIKGFRYQLYCESKSMYTTHCVIHVAVPQD 119

Query:   114 HCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAIL 173
              CRK+N  +    E  Y D + E L+ R+E+P+   RWDSPLF +  + DA    S  I 
Sbjct:   120 LCRKFNSNK----EQPYPDDVLEQLMFRYEEPNGMTRWDSPLFTVL-HDDA----SCPID 170

Query:   174 DAVAYLTKKVDSKSRDVKILQP 195
             D  + L    + K     +++P
Sbjct:   171 DIWSVLIHNKNVKPNQATMVKP 192

GO:0003682 "chromatin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=ISM

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006400 "tRNA modification" evidence=ISO

GO:0016887 "ATPase activity" evidence=ISM

GO:0071276 "cellular response to cadmium ion" evidence=IMP

GO:0071585 "detoxification of cadmium ion" evidence=IMP

UNIPROTKB|G4N519 MGG_12920 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 92/331 (27%), Positives = 153/331 (46%)

Query:     1 MALIVICGQPSSGKSLAAT-----CXXXXXXXXXXXXTVRIIDEASFHLDR---NQSYAS 52
             M L+++ G P+SGKS  A                    + +I + +  + R   + S   
Sbjct:     1 MPLVMVAGYPTSGKSTRAKQLYDDFSERLKTPAGSKYRLHLISDETLSISRCVYDLSPDK 60

Query:    53 MP--------AEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYC 104
             +P        +EK+ R  + + V R +S  +I+I+D LN IKG+RY+L+C A+      C
Sbjct:    61 VPEHTRSANASEKDARAAIYAAVRRVLSPRDIVILDHLNYIKGWRYQLFCEAKNISTPSC 120

Query:   105 VLYCDLEEDHCRKWNKER---------HEKG-EAA-----YDDKIFEDLVRRFEKPDRRN 149
             VL      D  R  N+ER          E G E A     Y+   +++LV R+E+P+  +
Sbjct:   121 VLQIGCSVDRARAVNEERLARRDGSRSDEAGAEDAPVVEPYEPANWDNLVFRYEEPNAMS 180

Query:   150 RWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANS 209
             RWDSPLF L  + D    +     D    + + +    R+ K++   +  Q  + +  + 
Sbjct:   181 RWDSPLFALV-WDDDEARAKEVFQD----IWEGIAGDGRE-KVVPNKVVIQRGKDAGGDY 234

Query:   210 LYELDRATQEVINAVVEAQSKALGGPMNGISLGQGLPNISIS---RSVGLPELRRLRRTF 266
             LY LDR TQ ++  ++E Q +  GG +  I    G  ++++    R + LP+L+RLRR F
Sbjct:   235 LYTLDRETQAIVKRILELQPEEGGGEIK-IPKASGDGDLTLELPGRKLLLPQLQRLRRAF 293

Query:   267 IKLT-GQTSLSGXXXXXXXXXXKRMFVDYLN 296
             + +  G   L G          +  FV YL+
Sbjct:   294 LGMNRGGIGLEGLGNMSVARV-QESFVGYLD 323

GO:0003682 "chromatin binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=ISS

CGD|CAL0000813 KTI12 [Candida albicans (taxid:5476)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 79/273 (28%), Positives = 127/273 (46%)

Query:     1 MALIVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDE------ASFHLDR-----NQS 49
             M LI+  G P SGK+  A              T +   E       ++H D      +++
Sbjct:     1 MPLIIFTGYPCSGKTKWAKLLQKELEIKIQ--TAKENSEPGQNYTVTYHSDETLGINHET 58

Query:    50 YASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCD 109
             Y     EK  RG   S V R +S+ NI+I+D+L+ IKG+RY+L+C A+     +C+++  
Sbjct:    59 YQDSNKEKLARGSQISAVKRDISRTNIVILDALSYIKGFRYQLFCEAKGNVTPHCIVHVI 118

Query:   110 LEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSS 169
                + C +WN  + E G   +D  + + L  R+E+P+   RWDSPLF +   +D  E   
Sbjct:   119 APIEKCIQWNDTK-ESGNK-WDPVLMKQLQMRYEEPNSDTRWDSPLFTILS-EDPQEK-- 173

Query:   170 AAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANS-LYELDRATQEVINAVVEAQ 228
               I D    L  K  +      +++PT           NS L ELD+ TQEV+  +++ Q
Sbjct:   174 IPIEDIWNALVLKKAAPPNAATLVKPT---------SGNSFLQELDKKTQEVVTKILQQQ 224

Query:   229 SKALGGPMNGISLGQGLPNISISRSVGLPELRR 261
                 G  +   +L   +P  + S +  L  +RR
Sbjct:   225 QITPGDVVIDKNLVVAIPTGTAS-TAQLQRIRR 256

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0P457	KTI12_DANRE	No assigned EC number	0.3836	0.8910	0.9818	yes	no
Q9P7V4	KTI12_SCHPO	No assigned EC number	0.3279	0.8976	0.9679	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0010023601 hypothetical protein (302 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
pfam08433	266	pfam08433, KTI12, Chromatin associated protein KTI	3e-97
COG4088	261	COG4088, COG4088, Predicted nucleotide kinase [Nuc	4e-34
pfam13671	143	pfam13671, AAA_33, AAA domain	6e-09
TIGR03574	249	TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, a	2e-07

>gnl|CDD|219839 pfam08433, KTI12, Chromatin associated protein KTI12

 Score =  286 bits (735), Expect = 3e-97
 Identities = 116/294 (39%), Positives = 165/294 (56%), Gaps = 28/294 (9%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGV 62
           LI++ G PSSGKS  A  LA+ L+E      V +I + S  ++ +  Y     EK LRG 
Sbjct: 1   LIILTGLPSSGKSTRAKELAKYLEEKGY--DVIVISDESLGIESD-DYKDSKKEKFLRGS 57

Query: 63  LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER 122
           LRS V R +SK+ I+IVDSLN IKG+RYEL+C+A+ A   YCV+YC    D C KWN+ER
Sbjct: 58  LRSAVKRDLSKNTIVIVDSLNYIKGFRYELYCIAKEAKTTYCVVYCKAPLDTCLKWNEER 117

Query: 123 HEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKK 182
              GE ++ D++ + L +RFE+P+ +NRWDSPLF +   +D   +    IL A+      
Sbjct: 118 ---GEPSWPDELLDQLYQRFEEPNSKNRWDSPLFTVLDDEDLPLD---EILKALI----- 166

Query: 183 VDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGISLG 242
                 +   L P  ATQ    SE N L ELD+ TQ++++ ++ AQ     G    +++ 
Sbjct: 167 ------EKSKLPPNQATQLKPLSETNFLQELDKETQDIVSEILNAQQST--GAGGLVTIP 218

Query: 243 QGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLN 296
                +  + SV L EL+RLRR F+KL  +        P D +    +FVDYLN
Sbjct: 219 GSCLPVEPAASVSLAELQRLRRQFVKLNKK------LRPVDLERIAPLFVDYLN 266

This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity. Length = 266

>gnl|CDD|226573 COG4088, COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]

 Score =  124 bits (314), Expect = 4e-34
 Identities = 79/304 (25%), Positives = 131/304 (43%), Gaps = 51/304 (16%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKN-- 58
           M LI++ G P SGK    T  A+ L +   +E  R+I     +L       S+P  K   
Sbjct: 1   MPLIILTGYPGSGK----TTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVY 56

Query: 59  ----LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDH 114
               L+ V R  +D ++ K+ ++IVD  N  K  R +L C A+     +C++Y     D 
Sbjct: 57  RESFLKSVER-LLDSAL-KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDT 114

Query: 115 CRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILD 174
           C + N+ER E       +++   L  RFE+P+   RWDSPL                ++D
Sbjct: 115 CLRRNRERGEP----IPEEVLRQLYDRFEEPNPDRRWDSPLL---------------VID 155

Query: 175 AVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGG 234
                T+ +D     +++++           E N  Y LD +T +VI  +     + +  
Sbjct: 156 DSDVSTEVIDFIESVLRLVEKP--------KERNRRYVLDSSTNKVIVRIR----QVMKE 203

Query: 235 PMNGISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDY 294
               +S  +G+    +     L EL+RLRR FI+   +          D D A+ +F + 
Sbjct: 204 TRRIVS--EGIAATQLDLPRKLSELQRLRRQFIEDINKAV------REDRDRAEEVFREC 255

Query: 295 LNRE 298
           LN +
Sbjct: 256 LNGD 259

Length = 261

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE--ASFHLDRNQSYASMPAEKNLR 60
           LI++ G P SGKS      A  L        +                      A   + 
Sbjct: 1   LILMVGLPGSGKS----TFARRLLRELGAVVLSSDTLRKRLRGDGPPDISYYARASGRVY 56

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
             L      ++     +IVD+ N  +  R  L  LAR  G    ++Y +  E+  R+ N 
Sbjct: 57  QRLLELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRERNA 116

Query: 121 ER--HEKGEAAYDDKIFEDLVRRFEKP 145
           +R       +   + + + ++ RFE P
Sbjct: 117 QRERSGGDPSDVPEAVLDRMLARFEPP 143

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 30/224 (13%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKN-LRG 61
           LI++ G P  GKS      ++ L +  +++ + +I      L  +    S P  K     
Sbjct: 1   LIILTGLPGVGKS----TFSKELAKKLSEKNIDVI-----ILGTDLIRESFPVWKEKYEE 51

Query: 62  VLRSEVDRSVSK--DNI--IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRK 117
            +R      +     N   +IVD  N     R +L  +A+     Y ++Y     D   +
Sbjct: 52  FIRDSTLYLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLR 111

Query: 118 WNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVA 177
            N ER EK      +++ +D+  +F++P  +  WD P   +   K    N      + + 
Sbjct: 112 RNIERGEK----IPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYN------EILE 161

Query: 178 YLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVI 221
            + +  ++K +  K  +P   T        N L ++D+ T++++
Sbjct: 162 EILEISENKLKIEKPKKPKRRTDE------NILNKIDKRTRQIV 199

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity [Protein synthesis, tRNA aminoacylation]. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
KOG3062	281	consensus RNA polymerase II elongator associated p	100.0
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	100.0
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	100.0
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	100.0
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	100.0
KOG4622	291	consensus Predicted nucleotide kinase [General fun	99.84
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.81
PRK06762	166	hypothetical protein; Provisional	99.77
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.74
PHA02530	300	pseT polynucleotide kinase; Provisional	99.72
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.69
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.67
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.66
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.65
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.63
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.62
COG4639	168	Predicted kinase [General function prediction only	99.62
COG0645	170	Predicted kinase [General function prediction only	99.59
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.54
PRK11545	163	gntK gluconate kinase 1; Provisional	99.51
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.49
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	99.46
PRK00889	175	adenylylsulfate kinase; Provisional	99.45
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.44
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.44
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.43
PRK03846	198	adenylylsulfate kinase; Provisional	99.43
PRK14527	191	adenylate kinase; Provisional	99.43
PRK14531	183	adenylate kinase; Provisional	99.42
PRK14532	188	adenylate kinase; Provisional	99.41
PRK05541	176	adenylylsulfate kinase; Provisional	99.4
PRK09825	176	idnK D-gluconate kinase; Provisional	99.4
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.38
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.35
PRK06217	183	hypothetical protein; Validated	99.34
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.34
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.34
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.33
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.33
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	99.32
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.32
PRK13973	213	thymidylate kinase; Provisional	99.31
PRK00698	205	tmk thymidylate kinase; Validated	99.31
PRK00625	173	shikimate kinase; Provisional	99.3
PRK01184	184	hypothetical protein; Provisional	99.28
PRK13949	169	shikimate kinase; Provisional	99.27
PRK02496	184	adk adenylate kinase; Provisional	99.26
PRK13946	184	shikimate kinase; Provisional	99.26
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.25
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.24
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.24
PRK00131	175	aroK shikimate kinase; Reviewed	99.23
PRK13947	171	shikimate kinase; Provisional	99.23
PRK00279	215	adk adenylate kinase; Reviewed	99.22
PLN02924	220	thymidylate kinase	99.22
PRK03839	180	putative kinase; Provisional	99.22
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.21
PLN02200	234	adenylate kinase family protein	99.2
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.2
PRK13808	333	adenylate kinase; Provisional	99.2
PRK08118	167	topology modulation protein; Reviewed	99.18
PRK07933	213	thymidylate kinase; Validated	99.18
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.16
PRK08233	182	hypothetical protein; Provisional	99.16
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.16
PRK14528	186	adenylate kinase; Provisional	99.14
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.13
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.13
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.12
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.12
PRK07261	171	topology modulation protein; Provisional	99.12
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.12
PRK03731	171	aroL shikimate kinase II; Reviewed	99.11
PRK13948	182	shikimate kinase; Provisional	99.11
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.1
PRK06696	223	uridine kinase; Validated	99.09
PRK14530	215	adenylate kinase; Provisional	99.09
PRK05057	172	aroK shikimate kinase I; Reviewed	99.08
PRK04040	188	adenylate kinase; Provisional	99.05
PRK14529	223	adenylate kinase; Provisional	99.05
PRK13975	196	thymidylate kinase; Provisional	99.05
PRK06547	172	hypothetical protein; Provisional	99.04
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.04
PTZ00301	210	uridine kinase; Provisional	99.04
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.02
PRK07667	193	uridine kinase; Provisional	99.01
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.01
PRK08356	195	hypothetical protein; Provisional	98.99
PRK13974	212	thymidylate kinase; Provisional	98.99
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.98
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.97
PRK04182	180	cytidylate kinase; Provisional	98.97
PRK13976	209	thymidylate kinase; Provisional	98.96
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.95
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.94
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.94
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.91
PRK14738	206	gmk guanylate kinase; Provisional	98.91
PRK14737	186	gmk guanylate kinase; Provisional	98.91
PLN02674	244	adenylate kinase	98.91
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.9
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	98.89
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.88
PTZ00088	229	adenylate kinase 1; Provisional	98.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.88
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.87
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	98.87
PRK05480	209	uridine/cytidine kinase; Provisional	98.87
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	98.87
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.87
PRK14526	211	adenylate kinase; Provisional	98.87
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.87
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.85
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.85
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.84
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.82
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.81
PRK05439	311	pantothenate kinase; Provisional	98.81
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.8
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.79
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.79
PTZ00451	244	dephospho-CoA kinase; Provisional	98.79
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.79
PRK15453	290	phosphoribulokinase; Provisional	98.78
PLN02422	232	dephospho-CoA kinase	98.77
PLN02459	261	probable adenylate kinase	98.77
PRK00023	225	cmk cytidylate kinase; Provisional	98.75
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.75
PRK12338	319	hypothetical protein; Provisional	98.75
PLN02842	505	nucleotide kinase	98.73
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.71
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.71
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.7
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.7
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.69
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.69
PRK00300	205	gmk guanylate kinase; Provisional	98.68
PLN02199	303	shikimate kinase	98.67
PHA03132	580	thymidine kinase; Provisional	98.66
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.66
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.65
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.63
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.63
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.61
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.6
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.59
PRK06761	282	hypothetical protein; Provisional	98.59
PLN02348	395	phosphoribulokinase	98.58
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.58
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.58
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.51
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.51
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	98.51
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.5
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	98.45
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.44
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.42
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.41
COG3709	192	Uncharacterized component of phosphonate metabolis	98.39
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.36
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.34
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.3
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.29
PLN02318	656	phosphoribulokinase/uridine kinase	98.29
PRK07429	327	phosphoribulokinase; Provisional	98.28
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.28
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.2
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.2
KOG3308	225	consensus Uncharacterized protein of the uridine k	98.16
PLN02165	334	adenylate isopentenyltransferase	98.16
PLN02772	398	guanylate kinase	98.11
PHA00729	226	NTP-binding motif containing protein	98.09
PRK09087	226	hypothetical protein; Validated	98.07
PF00004	132	AAA: ATPase family associated with various cellula	98.04
PRK08084	235	DNA replication initiation factor; Provisional	98.02
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	97.97
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.96
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	97.95
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	97.95
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	97.87
KOG1533	290	consensus Predicted GTPase [General function predi	97.85
PHA03136	378	thymidine kinase; Provisional	97.84
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.82
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.81
PRK06893	229	DNA replication initiation factor; Validated	97.81
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.79
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	97.75
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.73
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	97.73
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.72
PRK05642	234	DNA replication initiation factor; Validated	97.71
PRK08727	233	hypothetical protein; Validated	97.7
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	97.68
PRK06620	214	hypothetical protein; Validated	97.67
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	97.67
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.66
PF05729	166	NACHT: NACHT domain	97.64
PF13173	128	AAA_14: AAA domain	97.64
PLN03025	319	replication factor C subunit; Provisional	97.63
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	97.63
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.63
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.58
PLN02748	468	tRNA dimethylallyltransferase	97.58
cd03116	159	MobB Molybdenum is an essential trace element in t	97.57
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.57
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.57
PRK12402	337	replication factor C small subunit 2; Reviewed	97.56
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.54
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.52
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.49
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	97.49
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.48
PRK14974	336	cell division protein FtsY; Provisional	97.48
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.47
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	97.47
PRK13768	253	GTPase; Provisional	97.46
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	97.45
COG1660	286	Predicted P-loop-containing kinase [General functi	97.45
PRK04296	190	thymidine kinase; Provisional	97.45
PRK12377	248	putative replication protein; Provisional	97.44
PLN02840	421	tRNA dimethylallyltransferase	97.44
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.4
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.4
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.39
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.39
smart00382	148	AAA ATPases associated with a variety of cellular	97.39
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.38
PRK12422	445	chromosomal replication initiation protein; Provis	97.35
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.35
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.32
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.31
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	97.3
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.29
CHL00195	489	ycf46 Ycf46; Provisional	97.29
PRK05973	237	replicative DNA helicase; Provisional	97.29
PHA03134	340	thymidine kinase; Provisional	97.28
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.28
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.28
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.28
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.27
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.27
TIGR00959	428	ffh signal recognition particle protein. This mode	97.27
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.26
PRK10867	433	signal recognition particle protein; Provisional	97.26
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.26
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	97.25
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	97.24
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.23
PHA02544	316	44 clamp loader, small subunit; Provisional	97.23
PF13245	76	AAA_19: Part of AAA domain	97.23
PF02224	157	Cytidylate_kin: Cytidylate kinase; InterPro: IPR01	97.2
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.2
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.2
PRK06526	254	transposase; Provisional	97.19
PRK08116	268	hypothetical protein; Validated	97.19
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.17
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.16
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.15
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.15
PRK13695	174	putative NTPase; Provisional	97.15
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.15
PHA03135	343	thymidine kinase; Provisional	97.14
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.14
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.12
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.12
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.12
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.12
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.11
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.11
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.11
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.1
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.09
COG1855	604	ATPase (PilT family) [General function prediction	97.09
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.09
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.09
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.07
PLN02796	347	D-glycerate 3-kinase	97.07
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.07
PRK13764	602	ATPase; Provisional	97.05
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.02
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.02
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.02
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.02
PRK09183	259	transposase/IS protein; Provisional	97.01
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.99
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.99
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.99
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	96.99
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	96.99
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.98
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.97
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.97
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.96
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.96
PRK08181	269	transposase; Validated	96.96
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.96
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.96
COG3911	183	Predicted ATPase [General function prediction only	96.94
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.93
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.92
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.92
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.92
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.92
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	96.92
PLN03046	460	D-glycerate 3-kinase; Provisional	96.92
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	96.91
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.91
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.91
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.91
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.89
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.89
PRK07952	244	DNA replication protein DnaC; Validated	96.88
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.88
cd02034	116	CooC The accessory protein CooC, which contains a	96.87
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.87
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	96.84
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	96.83
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.83
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.83
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.82
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.8
PRK13342	413	recombination factor protein RarA; Reviewed	96.8
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.8
PRK14087	450	dnaA chromosomal replication initiation protein; P	96.8
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.8
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.8
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	96.8
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	96.79
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.78
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.78
PRK10416	318	signal recognition particle-docking protein FtsY;	96.77
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.77
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.77
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.77
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.75
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	96.75
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.74
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.73
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	96.72
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	96.72
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.72
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	96.72
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.71
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.71
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.7
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.69
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.69
PRK04195	482	replication factor C large subunit; Provisional	96.68
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.67
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.67
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.67
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.64
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	96.64
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	96.63
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.63
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	96.63
PRK04328	249	hypothetical protein; Provisional	96.62
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.62
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.62
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	96.61
CHL00176	638	ftsH cell division protein; Validated	96.61
CHL00181	287	cbbX CbbX; Provisional	96.6
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.6
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.6
PRK13886	241	conjugal transfer protein TraL; Provisional	96.59
cd03114	148	ArgK-like The function of this protein family is u	96.58
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	96.57
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.57
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.56
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.56
PF07726	131	AAA_3: ATPase family associated with various cellu	96.56
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.55
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.55
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.55
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	96.54
PRK00093	435	GTP-binding protein Der; Reviewed	96.54
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.54
PRK09354	349	recA recombinase A; Provisional	96.53
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.53
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.52
PRK08939	306	primosomal protein DnaI; Reviewed	96.51
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.51
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.5
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.5
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.5
PRK15455	644	PrkA family serine protein kinase; Provisional	96.49
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.49
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.48
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	96.48
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	96.48
PRK06835	329	DNA replication protein DnaC; Validated	96.48
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.46
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.46
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	96.46
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	96.45
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	96.45
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.44
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.44
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.44
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.44
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.43
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.43
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.43
PRK07940	394	DNA polymerase III subunit delta'; Validated	96.42
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.42
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.41
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.41
cd03112	158	CobW_like The function of this protein family is u	96.41
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	96.41
cd00881	189	GTP_translation_factor GTP translation factor fami	96.41
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	96.4
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	96.38
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	96.38
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.37
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.36
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.36
PRK03003	472	GTP-binding protein Der; Reviewed	96.35
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.33
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.32
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	96.32
COG5324	758	Uncharacterized conserved protein [Function unknow	96.31
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.31
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	96.31
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.31
PRK06851	367	hypothetical protein; Provisional	96.3
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.3
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	96.29
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.28
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.27
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.27
PRK13851	344	type IV secretion system protein VirB11; Provision	96.25
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.25
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.25
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.23
COG0593	408	DnaA ATPase involved in DNA replication initiation	96.22
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.22
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.22
PF13479	213	AAA_24: AAA domain	96.21
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.21
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	96.21
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.21
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.2
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	96.2
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.18
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	96.18
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	96.17
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	96.17
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	96.16
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.15
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.15
TIGR00665	434	DnaB replicative DNA helicase. This model describe	96.15
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.14
PHA03138	340	thymidine kinase; Provisional	96.13
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.1
cd02040	270	NifH NifH gene encodes component II (iron protein)	96.09
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.09
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.09
COG0218	200	Predicted GTPase [General function prediction only	96.07
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.06
COG4240	300	Predicted kinase [General function prediction only	96.04
PRK05636	505	replicative DNA helicase; Provisional	96.03
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	96.03
PRK00089	292	era GTPase Era; Reviewed	96.03
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.03
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.02
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	96.01
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	96.01
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	96.01
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.01
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	96.0
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	95.99
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	95.97
PRK11537	318	putative GTP-binding protein YjiA; Provisional	95.96
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	95.95
PRK09169	2316	hypothetical protein; Validated	95.95
PRK10646	153	ADP-binding protein; Provisional	95.95
PRK06851	367	hypothetical protein; Provisional	95.95
PRK05707	328	DNA polymerase III subunit delta'; Validated	95.94
cd04105	203	SR_beta Signal recognition particle receptor, beta	95.93
PRK08006	471	replicative DNA helicase; Provisional	95.93
COG0802	149	Predicted ATPase or kinase [General function predi	95.91
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	95.9
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	95.9
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.89
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	95.88
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	95.87
PRK10436	462	hypothetical protein; Provisional	95.85
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	95.85
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.8
PRK10536	262	hypothetical protein; Provisional	95.8
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	95.8
PRK06321	472	replicative DNA helicase; Provisional	95.79
PHA02244	383	ATPase-like protein	95.78
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	95.77
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	95.77
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	95.75
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	95.75
PHA03133	368	thymidine kinase; Provisional	95.75
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	95.74
TIGR02533	486	type_II_gspE general secretory pathway protein E.	95.74

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=100.00  E-value=5.4e-76  Score=496.02  Aligned_cols=277  Identities=54%  Similarity=0.848  Sum_probs=250.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      ||||+|||+|+|||||+|++|.+.|...+-...+.+++++.+++.+++.|.++..|+.+|+.++++++|.|+++.+||+|
T Consensus         1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~D   80 (281)
T KOG3062|consen    1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVD   80 (281)
T ss_pred             CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEe
Confidence            99999999999999999999999998875445778889999999888999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCP  160 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~  160 (303)
                      +.||||||||||||++|.+++.+|+||+.+|.|.|++||.+|...+++.|++++|+.|++|||+|+.+||||+|||++-+
T Consensus        81 slNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~RyEeP~s~NRWDsPLf~ll~  160 (281)
T KOG3062|consen   81 SLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEEPNSRNRWDSPLFTLLP  160 (281)
T ss_pred             cccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHhhCCCccccccCcceEEec
Confidence            99999999999999999999999999999999999999999987666679999999999999999999999999999998


Q ss_pred             CCcccccchHHHHHHHHHHHhccCCCCcccccCCCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 047717          161 YKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS  240 (303)
Q Consensus       161 ~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~l~~lD~~t~~iv~~i~~~~~~~~~~~~~~~~  240 (303)
                      +++.     ..+++|+++|++.        ++++||+||+.+|++++||||+||++||+||..||++||..+++.+.+++
T Consensus       161 ~~~~-----~~~~~I~~al~~n--------k~~~PnqaT~~~p~s~~N~L~eLDk~tq~II~~Im~~~ks~~~~~l~vpg  227 (281)
T KOG3062|consen  161 DVIT-----LPIDDILKALFEN--------KPLPPNQATQAAPLSEANFLYELDKATQEIIKAIMEAQKSNGTALLRVPG  227 (281)
T ss_pred             ccCC-----CcHHHHHHHHhcC--------CCCCCchhhhcCCcccccHHHHHHHHHHHHHHHHHHhhhccCceeEEecC
Confidence            4332     3479999999975        78999999999999999999999999999999999999866555555443


Q ss_pred             cCCCCCceeeccCCCHHHHHhhHHHHHhhhcCCCCCCCCCCCChhHHHHHHHHHHHh
Q 047717          241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNR  297 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~l~r~rrqf~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~  297 (303)
                        ...+.+.+.+.++++||+|||||||+++|++.+     +.+.++++.+||+|||.
T Consensus       228 --t~~~~l~i~~~v~l~eL~RLRrqFI~~~~~~~~-----~t~~~q~~~lFv~yLN~  277 (281)
T KOG3062|consen  228 --TELPPLPICRPVTLPELQRLRRQFIKLTKGQPL-----PTDLDQLKRLFVDYLNR  277 (281)
T ss_pred             --CcCCCccccccccHHHHHHHHHHHHHhhcCCCC-----CCCHHHHHHHHHHHhcc
Confidence              223336667889999999999999999998754     56789999999999994

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=100.00  E-value=6.7e-67  Score=468.75  Aligned_cols=269  Identities=43%  Similarity=0.742  Sum_probs=190.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      ||||+|||+|||||||+|++|++++...  +..+++++++.+++.+.. |.++..|+.+|+.+++.+.+.|+++.+||+|
T Consensus         1 MpLiil~G~P~SGKTt~a~~L~~~~~~~--~~~v~~i~~~~~~~~~~~-y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~D   77 (270)
T PF08433_consen    1 MPLIILCGLPCSGKTTRAKELKKYLEEK--GKEVVIISDDSLGIDRND-YADSKKEKEARGSLKSAVERALSKDTIVILD   77 (270)
T ss_dssp             E-EEEEE--TTSSHHHHHHHHHHHHHHT--T--EEEE-THHHH-TTSS-S--GGGHHHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhc--CCEEEEEcccccccchhh-hhchhhhHHHHHHHHHHHHHhhccCeEEEEe
Confidence            9999999999999999999999999874  577889998887765554 9999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCP  160 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~  160 (303)
                      ++||+|||||++||+||++++++|+|||+||.+.|++||.+|...  +.|++++|++|.+|||+|++++|||+|+|++++
T Consensus        78 d~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~--~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~~  155 (270)
T PF08433_consen   78 DNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP--ERYPEETIDDMIQRFEEPDPKNRWDSPLFTIDS  155 (270)
T ss_dssp             S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S----S-HHHHHHHHHH---TTSS-GGGS-SEEEE-
T ss_pred             CCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC--CCCCHHHHHHHHHHhcCCCCCCCccCCeEEEec
Confidence            999999999999999999999999999999999999999999862  469999999999999999999999999999996


Q ss_pred             CCcccccchHHHHHHHHHHHhccCCCCcccccCCCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCC-Ccccc
Q 047717          161 YKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGG-PMNGI  239 (303)
Q Consensus       161 ~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~l~~lD~~t~~iv~~i~~~~~~~~~~-~~~~~  239 (303)
                      +++     ...+++|+++|.+.        +.++||++|+.+|++++||||+||+.||+||++||++++.++.| .+.  
T Consensus       156 ~~~-----~~~~~~I~~~l~~~--------~~~~pn~~t~~~~~~~~n~lh~lD~~tr~iv~~il~~~~~~~~~~~~~--  220 (270)
T PF08433_consen  156 SDE-----ELPLEEIWNALFEN--------KPLPPNQATQSKPLSSTNFLHELDKITREIVSEILKAQKESGNGGKVK--  220 (270)
T ss_dssp             TTS--------HHHHHHHHHHH--------HTS--SSSTT-------HHHHHHHHHHHHHHHHHHH----HTT--HHH--
T ss_pred             CCC-----CCCHHHHHHHHHhc--------CCCCCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHhhcccCCCCccc--
Confidence            433     24579999999864        67899999999999999999999999999999999999766533 333  


Q ss_pred             ccCCCCCceeeccCCCHHHHHhhHHHHHhhhcCCCCCCCCCCCChhHHHHHHHHHHH
Q 047717          240 SLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLN  296 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~l~r~rrqf~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~  296 (303)
                       +++....+.+++.++++||+|||||||+++|+.      ++.|.++|+.+||+|||
T Consensus       221 -~~~~~~~~~l~~~~~~~~L~rlRrqFl~~~~~~------~~~~~~~i~~~Fv~yLn  270 (270)
T PF08433_consen  221 -VPGSTLKVNLPRSVTLAELQRLRRQFLKYNKQH------PPIDVDKIARLFVQYLN  270 (270)
T ss_dssp             ----------------HHHHHHHHHHHHHHHTTS------SS--HHHHHHHHHHHHH
T ss_pred             -cccccccchhhhhhhHHHHHHHHHHHHHhhCCC------CCCCHHHHHHHHHHHhC
Confidence             344445688898999999999999999999932      56799999999999998

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.4e-51  Score=344.67  Aligned_cols=248  Identities=29%  Similarity=0.469  Sum_probs=192.3

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCC-------ccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAK-------ETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSK   73 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~-------~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~   73 (303)
                      ||||+++|+|||||||+|+.|++.|...+..       +.+.++.|+++++. .+.|..+..+..+| .+.++++     
T Consensus         1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~-ke~yres~~ks~~r-lldSalk-----   73 (261)
T COG4088           1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPIL-KEVYRESFLKSVER-LLDSALK-----   73 (261)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchH-HHHHHHHHHHHHHH-HHHHHhc-----
Confidence            9999999999999999999999999876321       11223344445443 23555555556666 5555553     


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 047717           74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDS  153 (303)
Q Consensus        74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~  153 (303)
                      +.+||+|++||++||||+|+|.|+...+++|+||+.||.++|.+||.+|+    +++|++++.+|++|||+|+++++||+
T Consensus        74 n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg----epip~Evl~qly~RfEePn~~~rWDs  149 (261)
T COG4088          74 NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG----EPIPEEVLRQLYDRFEEPNPDRRWDS  149 (261)
T ss_pred             ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC----CCCCHHHHHHHHHhhcCCCCCccccC
Confidence            78999999999999999999999999999999999999999999998775    48999999999999999999999999


Q ss_pred             ceeeeCCCCcccccchHHHHHHHHHHHhccCCCCcccccCCCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCC
Q 047717          154 PLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALG  233 (303)
Q Consensus       154 pl~~i~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~l~~lD~~t~~iv~~i~~~~~~~~~  233 (303)
                      |+|++++.+..    ...++.++..+.           .++|        ....|+++.||..|++|+..+++..+..  
T Consensus       150 pll~id~~d~~----t~~IDfiesvl~-----------~vek--------pke~n~~yvld~~tnkvi~~i~~~~ket--  204 (261)
T COG4088         150 PLLVIDDSDVS----TEVIDFIESVLR-----------LVEK--------PKERNRRYVLDSSTNKVIVRIRQVMKET--  204 (261)
T ss_pred             ceEEEeccccc----ccchhHHHHHHH-----------hccC--------hhhcCceEecchhhHHHHHHHHHhcccc--
Confidence            99999975333    234566655444           1111        1357899999999999999999987632  


Q ss_pred             CCccccccCCC--CCceeeccCCCHHHHHhhHHHHHh-hhcCCCCCCCCCCCChhHHHHHHHHHHHh
Q 047717          234 GPMNGISLGQG--LPNISISRSVGLPELRRLRRTFIK-LTGQTSLSGPPPPSDADSAKRMFVDYLNR  297 (303)
Q Consensus       234 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~r~rrqf~~-~~~~~~~~~~~~~~~~~~~~~~f~~~l~~  297 (303)
                          +..++++  ...+++|+  +++||||||||||+ .+|+..       .+.+++..+|++|||.
T Consensus       205 ----r~ivsegi~~~q~dlp~--~L~elqrlrrqfi~~inK~~~-------~d~dr~~e~f~e~Lng  258 (261)
T COG4088         205 ----RRIVSEGIAATQLDLPR--KLSELQRLRRQFIEDINKAVR-------EDRDRAEEVFRECLNG  258 (261)
T ss_pred             ----eEeeeccchhhhccccc--cHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHhcc
Confidence                1112222  12355565  89999999999999 888653       3788999999999993

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=100.00  E-value=4.4e-48  Score=345.41  Aligned_cols=249  Identities=22%  Similarity=0.355  Sum_probs=203.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      ||+|+|+|||||||+|+.|++++...  +.++++++.+.+...- ..|.. ..++..++.....+..++.++..||+|++
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~--~~~v~~i~~D~lr~~~-~~~~~-~~e~~~~~~~~~~i~~~l~~~~~VI~D~~   76 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEK--NIDVIILGTDLIRESF-PVWKE-KYEEFIRDSTLYLIKTALKNKYSVIVDDT   76 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHc--CCceEEEccHHHHHHh-HHhhH-HhHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence            69999999999999999999999754  3466676654331100 01221 23445555566677888888999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCC
Q 047717           83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYK  162 (303)
Q Consensus        83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~  162 (303)
                      |+++++|++++|+++..++++|+|||++|.++|.+|+.+|+.    .++++++.++.++||+|...++|++|+|++++..
T Consensus        77 ~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~----~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~  152 (249)
T TIGR03574        77 NYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE----KIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTK  152 (249)
T ss_pred             chHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC----CCCHHHHHHHHHhhCCCCCCCCccCceEEecCCC
Confidence            999999999999999999999999999999999999998853    5788999999999999999999999999998753


Q ss_pred             cccccchHHHHHHHHHHHhccCCCCcccccCCCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCccccccC
Q 047717          163 DAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGISLG  242 (303)
Q Consensus       163 ~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~l~~lD~~t~~iv~~i~~~~~~~~~~~~~~~~~~  242 (303)
                      + .     .++++++.|++.+.      .+++||++|+.+|.+++||||+||+.||+||++||++++           . 
T Consensus       153 ~-~-----~~~ei~~~i~~~~~------~~~~~~~~~~~~~~~~~~~l~~ld~~~~~~i~~~~~~~~-----------~-  208 (249)
T TIGR03574       153 K-I-----DYNEILEEILEISE------NKLKIEKPKKPKRRTDENILNKIDKRTRQIVGELIKTGK-----------L-  208 (249)
T ss_pred             C-C-----CHHHHHHHHHHHhh------ccCChhhhhhhcccccccHHHHHHHHHHHHHHHHHHhcc-----------C-
Confidence            2 1     24777777776421      456899999999999999999999999999999999743           1 


Q ss_pred             CCCCceeeccCCCHHHHHhhHHHHHhhhcCCCCCCCCCCCChhHHHHHHHHHHH
Q 047717          243 QGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLN  296 (303)
Q Consensus       243 ~~~~~~~~~~~~~~~~l~r~rrqf~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~  296 (303)
                               ..++++||+|+|||||+++|++.    +++.|.++|+++||+|||
T Consensus       209 ---------~~~~~~~l~~~r~~f~~~~~~~~----~~~~~~~~~~~~f~~~l~  249 (249)
T TIGR03574       209 ---------DKELIKKLSELRKEFLKSIKDIK----AEKEDFRRVEKEFKDYLN  249 (249)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHhhhhh----hhhhHHHHHHHHHHHHhC
Confidence                     12579999999999999998532    356689999999999997

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=100.00  E-value=2.5e-38  Score=290.85  Aligned_cols=198  Identities=19%  Similarity=0.304  Sum_probs=160.7

Q ss_pred             HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC-
Q 047717           69 RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR-  147 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~-  147 (303)
                      ..+++..+||+|++||++++||+++|+|+.++.++|+|||++|.++|++||.+|..    .+++++++.|.++||.|++ 
T Consensus       122 ~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~~R~~----~v~devie~m~~r~E~P~~~  197 (340)
T TIGR03575       122 PAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNKQRPV----PLPDETIQLMGRKIEKPNPE  197 (340)
T ss_pred             HHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHhcCCC----CCCHHHHHHHHHHhcCCCCC
Confidence            34466778999999999999999999999999999999999999999999999953    6899999999999999997 


Q ss_pred             CCCCCCceeeeCCCCcccccchHHHHHHHHHHHhccCCCCcccccCCCCcccc--cccCCCcchHHHHHHHHHHHHHHHH
Q 047717          148 RNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQ--NTRFSEANSLYELDRATQEVINAVV  225 (303)
Q Consensus       148 ~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~--~~~~~~~~~l~~lD~~t~~iv~~i~  225 (303)
                      ++|||+|+|++++..+. ......+++++..+++..      .++++||++|+  .+|++++||||+||+.||+||+++|
T Consensus       198 ~nrWd~pl~~v~~~~~~-~~~~~~~~~~~~~~~~~p------~~~~~~n~~~~~~~~~~~~~n~lh~lD~~tr~ii~~i~  270 (340)
T TIGR03575       198 KNAWEHNSLVIQSSACI-SEDSLEVTDLLNTALENP------IKCVEENLEQKETDRIICSTNILHQADQTLRRIISQTM  270 (340)
T ss_pred             CCCCCCCeEEEecCccc-cccchhHHHHHHHHHhCC------CCCCCCcccccccccCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999999999985221 112346788988888531      24567899985  7889999999999999999999999


Q ss_pred             HHHHhcCCCCccccccCCCCCceeeccCCCHHHHHhhHHHHHhhhcCCC---CCCCCCCCChhHHHHHH
Q 047717          226 EAQSKALGGPMNGISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTS---LSGPPPPSDADSAKRMF  291 (303)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~rrqf~~~~~~~~---~~~~~~~~~~~~~~~~f  291 (303)
                      ++++...        .+..      ..++-..+|+.+|++||+-.|...   ..++....+...|...|
T Consensus       271 ~~~k~~~--------~~~~------~~~~~~~~l~~~rk~~L~~~r~~~~~~~~~~~~~~~~~~~~~~~  325 (340)
T TIGR03575       271 REAKDEQ--------ASAY------NLKLLAEELNKLKADFLEDLRQGNCKKYLCFQQTCDLSDIISLF  325 (340)
T ss_pred             HHHHhcc--------CChH------HHHHHHHHHHHHHHHHHHHHHhccccccccccccCCHHHHHHHH
Confidence            9998421        1110      023557799999999999987543   22444566788888888

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=99.84  E-value=2e-20  Score=155.89  Aligned_cols=218  Identities=17%  Similarity=0.256  Sum_probs=145.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCc-cEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHH----------
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKE-TVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDR----------   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~-~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~----------   69 (303)
                      |+|+.+.|.|+|||||+++.|.-...+..+.+ ....+||..+...+    +.....+..|+.+...++.          
T Consensus         1 i~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTp----SaD~a~keqRgr~~~~iEk~ISaiqedtd   76 (291)
T KOG4622|consen    1 IALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATP----SADKAAKEQRGRFECHIEKCISAIQEDTD   76 (291)
T ss_pred             CceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCc----chhhhHHHHhchHHHHHHHHHHHHhcccC
Confidence            78999999999999999999875443321111 11122322111111    0111122333333322222          


Q ss_pred             -------hcC------CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHH
Q 047717           70 -------SVS------KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFE  136 (303)
Q Consensus        70 -------~L~------~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~  136 (303)
                             .-+      ...++++|..+|++++|+.++.+|+..|.-+-+||+....+.|+++|..|...  ++.+.+++.
T Consensus        77 wppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsda--~k~~~dtiR  154 (291)
T KOG4622|consen   77 WPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSDA--EKQKNDTIR  154 (291)
T ss_pred             CCchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccccc--hhCccHHHH
Confidence                   111      23689999999999999999999999999999999999999999999999763  567889999


Q ss_pred             HHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHhccCCCCcccccCCCCcccccccCCCcchHHHHHHH
Q 047717          137 DLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRA  216 (303)
Q Consensus       137 ~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~l~~lD~~  216 (303)
                      .|.++.|.|+..+.|+...+++.+.+.++.  .+.+...+...+..   +........|..+....| .+++.||.||..
T Consensus       155 ki~EklE~PD~~ea~e~NSitLeg~dmd~~--geallafia~~~d~---~amet~~dl~~a~a~g~~-~d~S~l~rLDlL  228 (291)
T KOG4622|consen  155 KIFEKLEDPDEIEALEENSITLEGDDMDID--GEALLAFIAFDFDA---KAMETPEDLLKASAIGKP-PDPSKLERLDLL  228 (291)
T ss_pred             HHHHhccCccHHHHHHhcceeeccccccch--HHHHHHHHHHhccC---CcccCccccchHhhcCCC-CChHHHHHHHHH
Confidence            999999999999999999999998654432  22333333333332   111111122222222222 368899999999


Q ss_pred             HHHHHHHHHHHHHh
Q 047717          217 TQEVINAVVEAQSK  230 (303)
Q Consensus       217 t~~iv~~i~~~~~~  230 (303)
                      +|+.|+++|+..+.
T Consensus       229 lR~~igaLldg~kq  242 (291)
T KOG4622|consen  229 LRRLIGALLDGDKQ  242 (291)
T ss_pred             HHHHHHHHHccccc
Confidence            99999999986653

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.81  E-value=4.4e-19  Score=144.44  Aligned_cols=138  Identities=30%  Similarity=0.466  Sum_probs=98.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--cCCCcccc-CCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--FHLDRNQS-YASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--~~~~~~~~-y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      ||+|+|+|||||||+|+.|++.++..     ++..|+..  +....... .............+...+...+..|..+|+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~-----~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv   75 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAV-----VISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV   75 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEE-----EEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCE-----EEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence            79999999999999999999888632     22222211  10001111 111122333444666677788889999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCC--CCCHHHHHHHHHHhcCC
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEA--AYDDKIFEDLVRRFEKP  145 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~--~~~~e~~~~l~~r~E~P  145 (303)
                      |++|+...+|..+..+++..+.++.+|+|++|.+++.+|+..|...++.  .++.+.++++.++||+|
T Consensus        76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~p  143 (143)
T PF13671_consen   76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLARFEPP  143 (143)
T ss_dssp             ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHHHH--
T ss_pred             ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHhhccC
Confidence            9999999999999999999999999999999999999999999875422  26789999999999987

...

>PRK06762 hypothetical protein; Provisional

Probab=99.77  E-value=1.1e-17  Score=140.10  Aligned_cols=134  Identities=16%  Similarity=0.190  Sum_probs=96.5

Q ss_pred             CE-EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717            1 MA-LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII   77 (303)
Q Consensus         1 M~-LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V   77 (303)
                      || +|+|+|+|||||||+|+.|++.++.     .+.+++.+.+.  ..............    .+...+...+..|..|
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~-----~~~~i~~D~~r~~l~~~~~~~~~~~~~----~~~~~~~~~~~~g~~v   71 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGR-----GTLLVSQDVVRRDMLRVKDGPGNLSID----LIEQLVRYGLGHCEFV   71 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEecHHHHHHHhccccCCCCCcCHH----HHHHHHHHHHhCCCEE
Confidence            55 8999999999999999999999842     24444433221  10000011111111    2333444456788999


Q ss_pred             EEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCC
Q 047717           78 IVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKP  145 (303)
Q Consensus        78 IvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P  145 (303)
                      |+|+++....+|..+..+++..+.++.+||+++|.++|.+|+.+|..  .+.++++.++.++..++.+
T Consensus        72 ild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~~~~~~~  137 (166)
T PRK06762         72 ILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWWNPHDTL  137 (166)
T ss_pred             EEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHHhhcCCc
Confidence            99999888888888888888888899999999999999999999975  2457889999998887865

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.74  E-value=2.1e-17  Score=136.00  Aligned_cols=139  Identities=18%  Similarity=0.098  Sum_probs=94.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHH-hcCCCCEEEEcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDR-SVSKDNIIIVDS   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~-~L~~~~~VIvD~   81 (303)
                      ||+|+|+|||||||+|+.|++.++...++.+.+...........+..+.....+...+ .+...... .+..+..||+|+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~vVid~   79 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQ-ALTDALLAKLASAGEGVVVAC   79 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHH-HHHHHHHHHHHhCCCCEEEEe
Confidence            6899999999999999999998765322211111000000000111222222233333 22222222 224778899999


Q ss_pred             CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q 047717           82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR  147 (303)
Q Consensus        82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~  147 (303)
                      +++.+.+|+.+.+++  .+.++.+|||+||.+++.+|+..|..   +.++.+.++.+.+.||+|+.
T Consensus        80 ~~~~~~~r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~~~R~~---~~~~~~~~~~~~~~~~~p~~  140 (150)
T cd02021          80 SALKRIYRDILRGGA--ANPRVRFVHLDGPREVLAERLAARKG---HFMPADLLDSQFETLEPPGE  140 (150)
T ss_pred             ccccHHHHHHHHhcC--CCCCEEEEEEECCHHHHHHHHHhccc---CCCCHHHHHHHHHHhcCCCC
Confidence            999999999888877  67889999999999999999999964   35678899999999999886

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.72  E-value=6.4e-17  Score=148.06  Aligned_cols=136  Identities=18%  Similarity=0.199  Sum_probs=102.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH-ccccCCccEEEecCCcc-----CCCccccCCCc-hhhHHHHHHHHHHHHHhcCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL-KESEAKETVRIIDEASF-----HLDRNQSYASM-PAEKNLRGVLRSEVDRSVSKD   74 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l-~~~~~~~~v~~~~~~~~-----~~~~~~~y~~~-~~e~~~r~~l~~~v~~~L~~~   74 (303)
                      .+|+|+|+|||||||+|+.|++++ +.       .+++.+.+     .......|... ..+...+......+...+..|
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~-------~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g   75 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKA-------VNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSG   75 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCC-------EEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcC
Confidence            689999999999999999999998 33       22232211     00001112211 122233334555566677888


Q ss_pred             CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q 047717           75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR  147 (303)
Q Consensus        75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~  147 (303)
                      ..||+|+++..+.+|..+..+++..+..+.+||+++|.+++.+|+.+|+.   +.+++++++.|..+++.+..
T Consensus        76 ~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~~~  145 (300)
T PHA02530         76 KSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGE---RAVPEDVLRSMFKQMKEYRG  145 (300)
T ss_pred             CeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCc---CCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999954   56899999999999997654

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.69  E-value=2.7e-16  Score=152.64  Aligned_cols=130  Identities=16%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      .||+|+|+|||||||+|+.++...+.       .+++.+.++              .+. .+...+.++|..|..||+|+
T Consensus       370 ~LVil~G~pGSGKST~A~~l~~~~g~-------~~vn~D~lg--------------~~~-~~~~~a~~~L~~G~sVVIDa  427 (526)
T TIGR01663       370 EMVIAVGFPGAGKSHFCKKFFQPAGY-------KHVNADTLG--------------STQ-NCLTACERALDQGKRCAIDN  427 (526)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC-------eEECcHHHH--------------HHH-HHHHHHHHHHhCCCcEEEEC
Confidence            48999999999999999999887543       233332221              122 33446778899999999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCC
Q 047717           82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDS  153 (303)
Q Consensus        82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~  153 (303)
                      +|..+..|..+..+|+.++.++..+|+++|.++|++||..|.....  ..++++++..+..+||+|...++|+.
T Consensus       428 Tn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt~~EGF~~  501 (526)
T TIGR01663       428 TNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPALAEGFIA  501 (526)
T ss_pred             CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCCcccCceE
Confidence            9999999999999999999999999999999999999999975221  24678999999999999998888874

Note that the EC number for the kinase function is: 2.7.1.78

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.67  E-value=7.6e-16  Score=127.14  Aligned_cols=162  Identities=21%  Similarity=0.306  Sum_probs=110.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|||+|++||||||+|.+|.+.|...  +..++++|-+.+  ++.+.-.|+.......+| .+...++-....|-+||+
T Consensus        24 ~viW~TGLSGsGKSTiA~ale~~L~~~--G~~~y~LDGDnvR~gL~~dLgFs~edR~eniR-RvaevAkll~daG~iviv  100 (197)
T COG0529          24 AVIWFTGLSGSGKSTIANALEEKLFAK--GYHVYLLDGDNVRHGLNRDLGFSREDRIENIR-RVAEVAKLLADAGLIVIV  100 (197)
T ss_pred             eEEEeecCCCCCHHHHHHHHHHHHHHc--CCeEEEecChhHhhcccCCCCCChHHHHHHHH-HHHHHHHHHHHCCeEEEE
Confidence            489999999999999999999999876  567788876533  333444666555555566 343333334457888888


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH----hhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE----RHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL  155 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~----R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl  155 (303)
                      -....++..|.+.+.+..+  ..+.-||++||.++|.+|.-+    +...|+    -..|..+..-||+|..      |.
T Consensus       101 a~ISP~r~~R~~aR~~~~~--~~FiEVyV~~pl~vce~RDpKGLYkKAr~Ge----I~~fTGid~pYE~P~~------Pe  168 (197)
T COG0529         101 AFISPYREDRQMARELLGE--GEFIEVYVDTPLEVCERRDPKGLYKKARAGE----IKNFTGIDSPYEAPEN------PE  168 (197)
T ss_pred             EeeCccHHHHHHHHHHhCc--CceEEEEeCCCHHHHHhcCchHHHHHHHcCC----CCCCcCCCCCCCCCCC------Ce
Confidence            8777777777766654332  378999999999999999754    232221    1334556667999874      89


Q ss_pred             eeeCCCCcccccchHHHHHHHHHHHh
Q 047717          156 FELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       156 ~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      +++++....+   ++..+.|+++|..
T Consensus       169 l~l~t~~~~v---ee~v~~i~~~l~~  191 (197)
T COG0529         169 LHLDTDRNSV---EECVEQILDLLKE  191 (197)
T ss_pred             eEeccccCCH---HHHHHHHHHHHHh
Confidence            9999865543   2335555555543

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.66  E-value=5.3e-16  Score=127.82  Aligned_cols=145  Identities=22%  Similarity=0.297  Sum_probs=91.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|||+|+|||||||+|+.|.++|...  +..++++|-+.+  ++...-.|+....++.++ .+...+......|.+||+
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~r-r~~~~A~ll~~~G~ivIv   79 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLDGDNLRHGLNADLGFSKEDREENIR-RIAEVAKLLADQGIIVIV   79 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEEHHHHCTTTTTT--SSHHHHHHHHH-HHHHHHHHHHHTTSEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEecCcchhhccCCCCCCCHHHHHHHHH-HHHHHHHHHHhCCCeEEE
Confidence            479999999999999999999999876  466777775432  222233455444455555 344344445578999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH----hhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE----RHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL  155 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~----R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl  155 (303)
                      .....++.+|...+......  ++..||++||.++|.+|..+    |...++    -..+..+-..||+|..      |-
T Consensus        80 a~isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD~KglY~ka~~g~----i~~~~Gvd~~ye~P~~------pd  147 (156)
T PF01583_consen   80 AFISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRDPKGLYAKARAGE----IKNFTGVDDPYEEPLN------PD  147 (156)
T ss_dssp             E----SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHTTTSHHHHHHTTS----SSSHTTTSS-----SS-------S
T ss_pred             eeccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhCchhHHHHhhCCC----cCCccccccCCCCCCC------Ce
Confidence            99999999998888766543  78999999999999999753    332221    0122334456888774      78


Q ss_pred             eeeCCC
Q 047717          156 FELCPY  161 (303)
Q Consensus       156 ~~i~~~  161 (303)
                      ++++++
T Consensus       148 l~idt~  153 (156)
T PF01583_consen  148 LVIDTD  153 (156)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            888875

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.65  E-value=3.3e-15  Score=124.64  Aligned_cols=155  Identities=19%  Similarity=0.204  Sum_probs=99.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC-------ccccCCCchhhHHHHHHHHHHHHHhcCCCCE
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD-------RNQSYASMPAEKNLRGVLRSEVDRSVSKDNI   76 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~-------~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~   76 (303)
                      |+|+|+|||||||+|+.|++.++..       +++.+.+...       .+..+.+...+..++ .+...+...+..+..
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~-------~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~   72 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAK-------FIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQ-NLNDASTAAAAKNKV   72 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCe-------EEeCccccChHHHHHHHcCCCCChhhHHHHHH-HHHHHHHHHHhcCCC
Confidence            5799999999999999999998642       2333332110       011222222223333 334455556666777


Q ss_pred             EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCcee
Q 047717           77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLF  156 (303)
Q Consensus        77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~  156 (303)
                      +|+|.++..+.+|..+    +..+.++.+|||++|.++|.+|+..|..   +..+.+.++.....++.|...+.   ..+
T Consensus        73 ~Vi~~t~~~~~~r~~~----~~~~~~~~~i~l~~~~e~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~~~~e~---~~~  142 (163)
T TIGR01313        73 GIITCSALKRHYRDIL----REAEPNLHFIYLSGDKDVILERMKARKG---HFMKADMLESQFAALEEPLADET---DVL  142 (163)
T ss_pred             EEEEecccHHHHHHHH----HhcCCCEEEEEEeCCHHHHHHHHHhccC---CCCCHHHHHHHHHHhCCCCCCCC---ceE
Confidence            7888888877777544    3567788899999999999999999963   23466788888888888765331   346


Q ss_pred             eeCCCCcccccchHHHHHHHHHHH
Q 047717          157 ELCPYKDAIENSSAAILDAVAYLT  180 (303)
Q Consensus       157 ~i~~~~~~~~~~~~~~~ei~~~l~  180 (303)
                      +|++....    +...+.+++.|+
T Consensus       143 ~id~~~~~----~~~~~~~~~~~~  162 (163)
T TIGR01313       143 RVDIDQPL----EGVEEDCIAVVL  162 (163)
T ss_pred             EEECCCCH----HHHHHHHHHHHh
Confidence            77754221    234455555544

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.63  E-value=1.6e-14  Score=122.09  Aligned_cols=158  Identities=12%  Similarity=0.035  Sum_probs=93.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccC--CccEEEecCCc-c-----CCCccc--c-CCCchhhHHHHHHHHHHHHHh
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEA--KETVRIIDEAS-F-----HLDRNQ--S-YASMPAEKNLRGVLRSEVDRS   70 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~--~~~v~~~~~~~-~-----~~~~~~--~-y~~~~~e~~~r~~l~~~v~~~   70 (303)
                      .+|+|+|+|||||||+|+.|++.++...+  +.+.+...-.. .     ++.-..  . +......+.+ +.+...+...
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~~~~~   81 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLE-GAWYEAVAAM   81 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHH-HHHHHHHHHH
Confidence            48999999999999999999999864321  11111100000 0     000000  0 1111111233 3566677788


Q ss_pred             cCCCCEEEEcCCCC-chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCC
Q 047717           71 VSKDNIIIVDSLNS-IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRN  149 (303)
Q Consensus        71 L~~~~~VIvD~~n~-~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~  149 (303)
                      +..|..||+|+++. ...+|..+..+   .+.++..|||.||.++|.+|+.+|+..    . ..........++.     
T Consensus        82 l~~G~~VIvD~~~~~~~~~r~~~~~~---~~~~~~~v~l~~~~~~l~~R~~~R~~~----~-~~~~~~~~~~~~~-----  148 (175)
T cd00227          82 ARAGANVIADDVFLGRAALQDCWRSF---VGLDVLWVGVRCPGEVAEGRETARGDR----V-PGQARKQARVVHA-----  148 (175)
T ss_pred             HhCCCcEEEeeeccCCHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHHHhcCCc----c-chHHHHHHHHhcC-----
Confidence            89999999999887 55555443322   456789999999999999999998642    1 2222222222222     


Q ss_pred             CCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          150 RWDSPLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       150 rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                       |..+.++++++..+       .+++++.|.+
T Consensus       149 -~~~~dl~iDts~~s-------~~e~a~~i~~  172 (175)
T cd00227         149 -GVEYDLEVDTTHKT-------PIECARAIAA  172 (175)
T ss_pred             -CCcceEEEECCCCC-------HHHHHHHHHH
Confidence             44456888876433       3555555543

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.62  E-value=3.1e-15  Score=127.40  Aligned_cols=149  Identities=18%  Similarity=0.259  Sum_probs=96.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|+|+|+|||||||+|+.|...+...  +..+++++.+.+.  +.....|.+....+.++ .+.......+..|.+||+
T Consensus        19 ~~i~i~G~~GsGKstla~~l~~~l~~~--~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~VI~   95 (184)
T TIGR00455        19 VVIWLTGLSGSGKSTIANALEKKLESK--GYRVYVLDGDNVRHGLNKDLGFSEEDRKENIR-RIGEVAKLFVRNGIIVIT   95 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECChHHHhhhccccCCCHHHHHHHHH-HHHHHHHHHHcCCCEEEE
Confidence            589999999999999999999998643  3345555543321  11223455444444444 333344556788999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhc--CCCCCCHHHHHHHHHHhcCCCCCCCCCCceee
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEK--GEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFE  157 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~--~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~  157 (303)
                      |+++..+.+|..+..+++.  .++++|||+||.++|.+|+.++-..  .....  ..+..+...|++      |..|.++
T Consensus        96 d~~~~~~~~r~~~~~~~~~--~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~--~~l~~~~~~y~~------p~~adl~  165 (184)
T TIGR00455        96 SFISPYRADRQMVRELIEK--GEFIEVFVDCPLEVCEQRDPKGLYKKARNGEI--KGFTGIDSPYEA------PENPEVV  165 (184)
T ss_pred             ecCCCCHHHHHHHHHhCcC--CCeEEEEEeCCHHHHHHhCchhHHHHHhcCCc--cCcccccCCCCC------CCCCcEE
Confidence            9999998888777766553  3789999999999999995421000  00011  111233444554      4567899


Q ss_pred             eCCCCc
Q 047717          158 LCPYKD  163 (303)
Q Consensus       158 i~~~~~  163 (303)
                      |++++.
T Consensus       166 Idt~~~  171 (184)
T TIGR00455       166 LDTDQN  171 (184)
T ss_pred             EECCCC
Confidence            987643

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG4639 Predicted kinase [General function prediction only]

Probab=99.62  E-value=5.2e-15  Score=119.74  Aligned_cols=128  Identities=21%  Similarity=0.302  Sum_probs=95.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC-c-hhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS-M-PAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~-~-~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .|++|+|.|||||||+|++.   +.    ...++.+++...... ...+.. + ...+.+-..+...++..|.+|...|+
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n---~~----~~~~lsld~~r~~lg-~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tii   74 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKEN---FL----QNYVLSLDDLRLLLG-VSASKENSQKNDELVWDILYKQLEQRLRRGKFTII   74 (168)
T ss_pred             eEEEEecCCCCchhHHHHHh---CC----CcceecHHHHHHHhh-hchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            38999999999999999962   22    123455454322111 011111 1 11223334666778888999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRR  141 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r  141 (303)
                      |++|..+..|.++..+|+++|+....|++++|.+.|.+||..|.+    .++++++.++...
T Consensus        75 dAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R----qv~~~VI~r~~r~  132 (168)
T COG4639          75 DATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER----QVPEEVIPRMLRE  132 (168)
T ss_pred             EcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch----hCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999996654    6789999988876

>COG0645 Predicted kinase [General function prediction only]

Probab=99.59  E-value=2.7e-14  Score=117.57  Aligned_cols=149  Identities=19%  Similarity=0.184  Sum_probs=109.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC---CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH---LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~---~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      .|+++.|+|||||||+|+.|++.++...+..+++.-.-.+..   -...+.|......+.|. .+.......|+.|..||
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~-~l~~~A~l~l~~G~~VV   80 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYD-ELLGRAELLLSSGHSVV   80 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHH-HHHHHHHHHHhCCCcEE
Confidence            489999999999999999999999875322222110000100   01134677666666666 66667888999999999


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL  155 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl  155 (303)
                      +|+++.....|..+..+|+..+.++..|+|.+|.++...|..+|..+. ..-+-.++.....+++.+..   |+.+.
T Consensus        81 lDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~-sDA~~~il~~q~~~~~~~~~---~~~~~  153 (170)
T COG0645          81 LDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDA-SDATFDILRVQLAEDEPWTE---WETAD  153 (170)
T ss_pred             EecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCc-ccchHHHHHHHHhhhCCccc---ccchh
Confidence            999999999999999999999999999999999999999999997521 12244677777777776443   55443

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.54  E-value=5.1e-14  Score=116.07  Aligned_cols=114  Identities=19%  Similarity=0.300  Sum_probs=81.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      +|+|+|.|||||||+|+.|++.+...  +..+++++.+.+.  +.....|.+......++ .+...+...+..|.+||+|
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~--g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~-~~~~~a~~l~~~G~~VIid   77 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQR--GRPVYVLDGDNVRHGLNKDLGFSREDREENIR-RIAEVAKLLADAGLIVIAA   77 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEEcCHHHHHhhhhccCCCcchHHHHHH-HHHHHHHHHHhCCCEEEEc
Confidence            48999999999999999999998643  2345555533221  11122454443444444 2333444556789999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      +++..+.+|..+..+++  +.++++|||++|.++|.+|+.+
T Consensus        78 ~~~~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          78 FISPYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             cCCCCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCch
Confidence            99998888877776665  6889999999999999999754

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.51  E-value=9.7e-13  Score=110.06  Aligned_cols=157  Identities=13%  Similarity=0.141  Sum_probs=92.8

Q ss_pred             EccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCccccCCCchhhHHHHHHHHHHHHH-hcCCCCEEEEcCCCC
Q 047717            7 CGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRNQSYASMPAEKNLRGVLRSEVDR-SVSKDNIIIVDSLNS   84 (303)
Q Consensus         7 ~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~~~y~~~~~e~~~r~~l~~~v~~-~L~~~~~VIvD~~n~   84 (303)
                      .|+|||||||+++.|++.++...++.+++.... ... ...+..|.+........ .+...+.. ....+..||+ +++.
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~-~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~viv-~s~~   77 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR-NIEKMASGEPLNDDDRKPWLQ-ALNDAAFAMQRTNKVSLIV-CSAL   77 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchh-hhccccCCCCCChhhHHHHHH-HHHHHHHHHHHcCCceEEE-Eecc
Confidence            499999999999999999975322222211000 000 00011222211111111 22222212 2234555666 7888


Q ss_pred             chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcc
Q 047717           85 IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDA  164 (303)
Q Consensus        85 ~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~  164 (303)
                      .+.+|..    ++..+.+++.|||+||.+++.+|+..|..   +..+.+++......+|+|...+ .  -++++++.. .
T Consensus        78 ~~~~r~~----~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~---~~a~~~vl~~Q~~~~ep~~~~e-~--~~~~id~~~-~  146 (163)
T PRK11545         78 KKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARKG---HFFKTQMLVTQFETLQEPGADE-T--DVLVVDIDQ-P  146 (163)
T ss_pred             hHHHHHH----HHccCCCEEEEEEECCHHHHHHHHHhccC---CCCCHHHHHHHHHHcCCCCCCC-C--CEEEEeCCC-C
Confidence            7777744    34577899999999999999999999975   2357899999888999876544 1  236666542 1


Q ss_pred             cccchHHHHHHHHHHH
Q 047717          165 IENSSAAILDAVAYLT  180 (303)
Q Consensus       165 ~~~~~~~~~ei~~~l~  180 (303)
                      .   .+..++++..+.
T Consensus       147 ~---~~~~~~~~~~~~  159 (163)
T PRK11545        147 L---EGVVASTIEVIK  159 (163)
T ss_pred             H---HHHHHHHHHHHH
Confidence            1   244566665554

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.49  E-value=6.2e-13  Score=131.25  Aligned_cols=167  Identities=15%  Similarity=0.188  Sum_probs=107.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      +|+|+|+|||||||+|+.|++.++.. .+..+.++|.+..  .+.....|.+...+..++ .+.......++.|.+||+|
T Consensus       394 ~Ivl~Gl~GSGKSTia~~La~~L~~~-~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~-~l~~~a~~v~~~Gg~vI~~  471 (568)
T PRK05537        394 TVFFTGLSGAGKSTIAKALMVKLMEM-RGRPVTLLDGDVVRKHLSSELGFSKEDRDLNIL-RIGFVASEITKNGGIAICA  471 (568)
T ss_pred             EEEEECCCCChHHHHHHHHHHHhhhc-cCceEEEeCCcHHHHhccCCCCCCHHHHHHHHH-HHHHHHHHHHhCCCEEEEE
Confidence            79999999999999999999999851 1334556654432  222233465544444444 2333445567889999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCP  160 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~  160 (303)
                      .++.+...|.+++.+++..+ .+.+|||++|.++|.+|+.+.--   ..-..+.+..+.   +.-.+-+.|..+.++|++
T Consensus       472 ~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~rr~Ll---~~~~~~~i~~l~---~~R~~yy~p~~Adl~IDt  544 (568)
T PRK05537        472 PIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDRKGLY---AKAREGKIKGFT---GISDPYEPPANPELVIDT  544 (568)
T ss_pred             eCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhcccccc---ccchhchhhccc---cccccccCCCCCcEEEEC
Confidence            99999999999999888765 46789999999999999732100   001123344433   222223446667889987


Q ss_pred             CCcccccchHHHHHHHHHHHh
Q 047717          161 YKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       161 ~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      +..++   ++..++|++.|.+
T Consensus       545 ~~~s~---~eiv~~Il~~L~~  562 (568)
T PRK05537        545 TNVTP---DECAHKILLYLEE  562 (568)
T ss_pred             CCCCH---HHHHHHHHHHHHH
Confidence            64332   2344555555543

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=99.46  E-value=1.6e-12  Score=113.47  Aligned_cols=138  Identities=21%  Similarity=0.252  Sum_probs=87.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cC-CCccccCCCchh-hHHHHH-----HHHHHHHHhc-
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FH-LDRNQSYASMPA-EKNLRG-----VLRSEVDRSV-   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~-~~~~~~y~~~~~-e~~~r~-----~l~~~v~~~L-   71 (303)
                      +|+|+|+||.|||++|++|+++|++.++...+..+++..   .+ ......|+.... ...+|.     .+...+ ..| 
T Consensus        14 ~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~-~~l~   92 (222)
T PF01591_consen   14 VIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLI-EWLQ   92 (222)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHH-HHHh
Confidence            799999999999999999999999987777777766531   11 112234554432 223332     333222 344 


Q ss_pred             -CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC----CHHHHHHHHHH
Q 047717           72 -SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY----DDKIFEDLVRR  141 (303)
Q Consensus        72 -~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~----~~e~~~~l~~r  141 (303)
                       ..|.+.|+|++|.++..|..+...++..+..+.+|.+.|+.+..+++|..........|    +++.+++..+|
T Consensus        93 ~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R  167 (222)
T PF01591_consen   93 EEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR  167 (222)
T ss_dssp             TS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred             cCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence             36789999999999999999999999999888888899999999999987765331122    34455555544

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.45  E-value=8.8e-13  Score=111.35  Aligned_cols=111  Identities=18%  Similarity=0.312  Sum_probs=73.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|+|+|+|||||||+|+.|+..+...  +..+.+++.+.+.  ......|.....+..++. +..........|.+||+
T Consensus         5 ~~i~~~G~~GsGKST~a~~la~~l~~~--g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~-~~~~a~~~~~~g~~vi~   81 (175)
T PRK00889          5 VTVWFTGLSGAGKTTIARALAEKLREA--GYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRR-IGFVANLLTRHGVIVLV   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEcCccHHHHHhcCCCCChhhHHHHHHH-HHHHHHHHHhCCCEEEE
Confidence            489999999999999999999998654  3446666544321  111123433333444442 22222223456889999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN  119 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~  119 (303)
                      |+++.+..+|+++...    ...+.+||++||.+++.+|+
T Consensus        82 ~~~~~~~~~~~~l~~~----~~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         82 SAISPYRETREEVRAN----IGNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             ecCCCCHHHHHHHHhh----cCCeEEEEEcCCHHHHHHhC
Confidence            9987666666655433    35688999999999999996

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.44  E-value=9e-13  Score=132.40  Aligned_cols=113  Identities=17%  Similarity=0.250  Sum_probs=83.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|+++|+|||||||+|+.|++.|...  +..+.+++.+.+  .+.....|.+....+.++. +...+...+..|.+||+
T Consensus       461 ~~i~~~G~~gsGKst~a~~l~~~l~~~--~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~-l~~~a~~~~~~G~~Viv  537 (632)
T PRK05506        461 ATVWFTGLSGSGKSTIANLVERRLHAL--GRHTYLLDGDNVRHGLNRDLGFSDADRVENIRR-VAEVARLMADAGLIVLV  537 (632)
T ss_pred             EEEEecCCCCchHHHHHHHHHHHHHHc--CCCEEEEcChhhhhccCCCCCCCHHHHHHHHHH-HHHHHHHHHhCCCEEEE
Confidence            589999999999999999999999753  344556654433  2222335665555666663 33345556678999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN  119 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~  119 (303)
                      |+++..+.+|+.++.+++.  .++++|||++|.+.|.+|+
T Consensus       538 da~~~~~~~R~~~r~l~~~--~~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        538 SFISPFREERELARALHGE--GEFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             ECCCCCHHHHHHHHHhccc--CCeEEEEECCCHHHHHhhC
Confidence            9999888999877666543  3789999999999999996

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2.7e-12  Score=103.80  Aligned_cols=158  Identities=17%  Similarity=0.183  Sum_probs=109.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC-------ccccCCCchhhHHHHHHHHHHHHHhcCCCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD-------RNQSYASMPAEKNLRGVLRSEVDRSVSKDN   75 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~-------~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~   75 (303)
                      .|++.|..||||||++++|.+.|+..++       +.+.+|..       ++....++.....+. .+.......+.++.
T Consensus        14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~-------dgDd~Hp~~NveKM~~GipLnD~DR~pWL~-~i~~~~~~~l~~~q   85 (191)
T KOG3354|consen   14 VIVVMGVSGSGKSTIGKALSEELGLKFI-------DGDDLHPPANVEKMTQGIPLNDDDRWPWLK-KIAVELRKALASGQ   85 (191)
T ss_pred             eEEEEecCCCChhhHHHHHHHHhCCccc-------ccccCCCHHHHHHHhcCCCCCcccccHHHH-HHHHHHHHHhhcCC
Confidence            7999999999999999999999987532       33333321       111223322222333 22233444556888


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHc------CCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCC
Q 047717           76 IIIVDSLNSIKGYRYELWCLARAA------GIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRN  149 (303)
Q Consensus        76 ~VIvD~~n~~k~~R~~l~~~ak~~------~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~  149 (303)
                      .||+-....-+.||+.++...+..      ...+.+||+.++.++..+|..+|..   +-.+.+.++....-.|.|+..+
T Consensus        86 ~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g---HFMp~~lleSQf~~LE~p~~~e  162 (191)
T KOG3354|consen   86 GVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG---HFMPADLLESQFATLEAPDADE  162 (191)
T ss_pred             eEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc---ccCCHHHHHHHHHhccCCCCCc
Confidence            899998888999999888744411      2356789999999999999999975   5678999999999999998632


Q ss_pred             CCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          150 RWDSPLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       150 rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                         +..++|+-...       ..+++++.|.+
T Consensus       163 ---~div~isv~~~-------~~e~iv~tI~k  184 (191)
T KOG3354|consen  163 ---EDIVTISVKTY-------SVEEIVDTIVK  184 (191)
T ss_pred             ---cceEEEeeccC-------CHHHHHHHHHH
Confidence               25677664322       24667666665

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.43  E-value=4.1e-12  Score=108.60  Aligned_cols=156  Identities=13%  Similarity=0.090  Sum_probs=90.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC---CccccCCC------chh-hHH-----HHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL---DRNQSYAS------MPA-EKN-----LRGVLRSE   66 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~---~~~~~y~~------~~~-e~~-----~r~~l~~~   66 (303)
                      ++|+|.|++||||||+++.|++++...  +..++.+....-..   .-...|..      ... +..     ....+...
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   78 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEAR--GYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEV   78 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999754  33444443221100   00011111      101 100     01112223


Q ss_pred             HHHhcCCCCEEEEcCCCCc------------hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCC-CCCHH
Q 047717           67 VDRSVSKDNIIIVDSLNSI------------KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEA-AYDDK  133 (303)
Q Consensus        67 v~~~L~~~~~VIvD~~n~~------------k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~-~~~~e  133 (303)
                      +...+..+.+||+|-..+.            ..+.+++...+.....+..+||+++|++++.+|+.+|+..... ....+
T Consensus        79 ~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~  158 (200)
T cd01672          79 IKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLE  158 (200)
T ss_pred             HHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHH
Confidence            3445678899999943211            1233444444444446788999999999999999998753211 12356


Q ss_pred             HHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          134 IFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       134 ~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      .++++...|+.......  .+++++++.
T Consensus       159 ~~~~~~~~y~~~~~~~~--~~~~~id~~  184 (200)
T cd01672         159 FHERVREGYLELAAQEP--ERIIVIDAS  184 (200)
T ss_pred             HHHHHHHHHHHHHHhCC--CeEEEEeCC
Confidence            66777777776443322  367777764

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.43  E-value=2.5e-12  Score=110.95  Aligned_cols=113  Identities=17%  Similarity=0.247  Sum_probs=79.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|+|+|.+||||||+|+.|+..+...  +..+++++.+.+.  ......|........++ .+...+...+..|.+||.
T Consensus        25 ~~i~i~G~~GsGKSTla~~l~~~l~~~--~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~-~l~~~a~~~~~~G~~VI~  101 (198)
T PRK03846         25 VVLWFTGLSGSGKSTVAGALEEALHEL--GVSTYLLDGDNVRHGLCSDLGFSDADRKENIR-RVGEVAKLMVDAGLVVLT  101 (198)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhC--CCCEEEEcCEeHHhhhhhcCCcCcccHHHHHH-HHHHHHHHHhhCCCEEEE
Confidence            379999999999999999999988543  3345566543321  11123454444444444 343344456678888888


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN  119 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~  119 (303)
                      +..+..+.+|..+..+++..  .+.+|||++|.+++.+|.
T Consensus       102 ~~~~~~~~~R~~~r~~l~~~--~~i~V~L~~~~e~~~~R~  139 (198)
T PRK03846        102 AFISPHRAERQMVRERLGEG--EFIEVFVDTPLAICEARD  139 (198)
T ss_pred             EeCCCCHHHHHHHHHHcccC--CEEEEEEcCCHHHHHhcC
Confidence            87777889998888876654  466899999999999993

>PRK14527 adenylate kinase; Provisional

Probab=99.43  E-value=6.4e-13  Score=113.90  Aligned_cols=139  Identities=13%  Similarity=0.185  Sum_probs=82.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc----cccCCC--chhhHHHHHHHHHHHHHhcCC--
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR----NQSYAS--MPAEKNLRGVLRSEVDRSVSK--   73 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~----~~~y~~--~~~e~~~r~~l~~~v~~~L~~--   73 (303)
                      ++|+|.|+|||||||+|+.|+++++..++..+.++......+...    ...+..  .....    .+...+...+.+  
T Consensus         7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~----~~~~l~~~~l~~~~   82 (191)
T PRK14527          7 KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDE----LILALIRDELAGME   82 (191)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHhcCC
Confidence            489999999999999999999999865433321111100000000    000000  00011    122233333322  


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHHHcCCcE-EEEEEecCHHHHHHHHHHhhhcC-CCCCCHHHHHHHHHHhcC
Q 047717           74 DNIIIVDSLNSIKGYRYELWCLARAAGIRY-CVLYCDLEEDHCRKWNKERHEKG-EAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus        74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~-~vI~l~~~~e~~~~R~~~R~~~~-~~~~~~e~~~~l~~r~E~  144 (303)
                      +..+|+||......++..+..+++..+.+. ++|+++||.+++.+|+.+|.... .....++.+.+-...|..
T Consensus        83 ~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~  155 (191)
T PRK14527         83 PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYRE  155 (191)
T ss_pred             CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHH
Confidence            356999997777777877777777776654 68999999999999999986421 112245656555555543

>PRK14531 adenylate kinase; Provisional

Probab=99.42  E-value=2e-12  Score=110.17  Aligned_cols=116  Identities=14%  Similarity=0.099  Sum_probs=72.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC----------CccccCCCchhhHHHHHHHHHHHHHhcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL----------DRNQSYASMPAEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~----------~~~~~y~~~~~e~~~r~~l~~~v~~~L~   72 (303)
                      -|+|+|+|||||||+|+.|++.++..+++..-++..+..-+.          ..+..+.    +......+...+...  
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~----d~l~~~~~~~~l~~~--   77 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVS----DALVLAIVESQLKAL--   77 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhhc--
Confidence            689999999999999999999987653222111100000000          0011111    122222222222221  


Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhhh
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+..+|+||.+....++..+..++...+. ..++|+++||.+++.+|+..|++
T Consensus        78 ~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r  130 (183)
T PRK14531         78 NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR  130 (183)
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence            34568889998888877777766666554 45689999999999999999875

>PRK14532 adenylate kinase; Provisional

Probab=99.41  E-value=1.7e-12  Score=110.80  Aligned_cols=117  Identities=14%  Similarity=0.167  Sum_probs=73.4

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccC------CCccccCCCchhhHHHHHHHHHHHHHh
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFH------LDRNQSYASMPAEKNLRGVLRSEVDRS   70 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~------~~~~~~y~~~~~e~~~r~~l~~~v~~~   70 (303)
                      |. |+|.|+|||||||+|+.|++.++..+++.+-++....    ..+      +..+..+.    ...+...+...+ ..
T Consensus         1 ~~-i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~-~~   74 (188)
T PRK14532          1 MN-LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVS----DEIVIALIEERL-PE   74 (188)
T ss_pred             CE-EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccC----HHHHHHHHHHHH-hC
Confidence            44 8889999999999999999998764322111110000    000      00111111    122222333222 22


Q ss_pred             cCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhh
Q 047717           71 VSKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        71 L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      +..+..+|+||.+.....+..+..+++..+. +..+|+|++|.+++.+|+..|.
T Consensus        75 ~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~  128 (188)
T PRK14532         75 AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF  128 (188)
T ss_pred             cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence            3456789999988888888777766666553 5589999999999999999885

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.40  E-value=7.3e-12  Score=105.83  Aligned_cols=112  Identities=19%  Similarity=0.271  Sum_probs=69.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCccccCCCchhhHHHHHHHHHHHHH-hcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRNQSYASMPAEKNLRGVLRSEVDR-SVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~~~y~~~~~e~~~r~~l~~~v~~-~L~~~~~VIv   79 (303)
                      .+|+|+|+|||||||+|+.|++.+...+  ..+++++.+.+. ......|.........  .....+.+ ....|..||+
T Consensus         8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~--~~~~~~~~d~~r~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~g~~VI~   83 (176)
T PRK05541          8 YVIWITGLAGSGKTTIAKALYERLKLKY--SNVIYLDGDELREILGHYGYDKQSRIEMA--LKRAKLAKFLADQGMIVIV   83 (176)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEecHHHHhhcCCCCCCHHHHHHHH--HHHHHHHHHHHhCCCEEEE
Confidence            3899999999999999999999997542  234455433221 0011123322111111  12222333 3357889999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      |+.++.+.    +++.++....++++|||+||++++.+|...
T Consensus        84 ~~~~~~~~----~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         84 TTISMFDE----IYAYNRKHLPNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             EeCCcHHH----HHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence            99876543    344445444567899999999999999764

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.40  E-value=1.4e-11  Score=104.39  Aligned_cols=156  Identities=15%  Similarity=0.131  Sum_probs=96.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-------CccccCCCchhhHHHHHHHHHHHHHhcC-CC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-------DRNQSYASMPAEKNLRGVLRSEVDRSVS-KD   74 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-------~~~~~y~~~~~e~~~r~~l~~~v~~~L~-~~   74 (303)
                      +++|.|++||||||+++.|+..++..       .++.+.++.       ..+..|.+.... .+...+...+...+. ..
T Consensus         5 ~i~l~G~sGsGKSTl~~~la~~l~~~-------~i~gd~~~~~~~~r~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~   76 (176)
T PRK09825          5 SYILMGVSGSGKSLIGSKIAALFSAK-------FIDGDDLHPAKNIDKMSQGIPLTDEDRL-PWLERLNDASYSLYKKNE   76 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCE-------EECCcccCCHhHHHHHhcCCCCCcccch-HHHHHHHHHHHHHHhcCC
Confidence            79999999999999999999987642       222222111       001122221111 111112211111111 13


Q ss_pred             CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717           75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP  154 (303)
Q Consensus        75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p  154 (303)
                      ..+|+ ++++.+.+|..    ++..+.++.+|||+||.+++.+|+.+|..   +..+.++++.....||+|...+   ..
T Consensus        77 ~g~iv-~s~~~~~~R~~----~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~---~~~~~~vl~~Q~~~~e~~~~~e---~~  145 (176)
T PRK09825         77 TGFIV-CSSLKKQYRDI----LRKSSPNVHFLWLDGDYETILARMQRRAG---HFMPPDLLQSQFDALERPCADE---HD  145 (176)
T ss_pred             CEEEE-EEecCHHHHHH----HHhhCCCEEEEEEeCCHHHHHHHHhcccC---CCCCHHHHHHHHHHcCCCCCCc---CC
Confidence            45566 66777777754    46667889999999999999999999975   3468899999999999775422   23


Q ss_pred             eeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          155 LFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       155 l~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      .++++++...    ....++++..+-+
T Consensus       146 ~~~~d~~~~~----~~~~~~~~~~~~~  168 (176)
T PRK09825        146 IARIDVNHDI----ENVTEQCRQAVQA  168 (176)
T ss_pred             eEEEECCCCH----HHHHHHHHHHHHH
Confidence            6777765331    2345556555543

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.38  E-value=1.8e-12  Score=110.02  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-cCCCccc-------cCC---CchhhHHHHHHHHHHHHHhc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-FHLDRNQ-------SYA---SMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-~~~~~~~-------~y~---~~~~e~~~r~~l~~~v~~~L   71 (303)
                      +|+|+|+|||||||+|+.|+++++..+     +..++.- ..+....       .|.   ...........+...+.. .
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~-----is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-~   74 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTH-----LSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQA-D   74 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeE-----EECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhc-c
Confidence            589999999999999999999987542     2222210 0000000       000   000011112223222221 1


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      . +..+|+||.+.....+..|..++.....+..+||+++|.+++.+|+.+|..
T Consensus        75 ~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~  126 (183)
T TIGR01359        75 G-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ  126 (183)
T ss_pred             C-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence            2 678999998877777776665544333455699999999999999999865

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.35  E-value=4.5e-11  Score=102.43  Aligned_cols=154  Identities=17%  Similarity=0.214  Sum_probs=90.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-cCCCc--ccc--CC-CchhhHHH--------H-HHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-FHLDR--NQS--YA-SMPAEKNL--------R-GVLRSE   66 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-~~~~~--~~~--y~-~~~~e~~~--------r-~~l~~~   66 (303)
                      ++|+|.|+|||||||+++.|+++++..  +..++.+.... .....  ...  +. ........        | ..+...
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~~--g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~   81 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQEN--GYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDK   81 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999864  33444433221 00000  000  00 00001000        1 122234


Q ss_pred             HHHhcCCCCEEEEcCCCCchHH----------HHHHHHHHHHcCC--cEEEEEEecCHHHHHHHHHHhhhcCCC-CCCHH
Q 047717           67 VDRSVSKDNIIIVDSLNSIKGY----------RYELWCLARAAGI--RYCVLYCDLEEDHCRKWNKERHEKGEA-AYDDK  133 (303)
Q Consensus        67 v~~~L~~~~~VIvD~~n~~k~~----------R~~l~~~ak~~~~--~~~vI~l~~~~e~~~~R~~~R~~~~~~-~~~~e  133 (303)
                      +...+..+.+||+|... ..++          ...++++.+....  +.++|||++|++++++|+..|...... ..+.+
T Consensus        82 i~~~l~~~~~VI~DR~~-~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~  160 (195)
T TIGR00041        82 IKPALAEGKLVISDRYV-FSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLD  160 (195)
T ss_pred             HHHHHhCCCEEEECCcc-cHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHH
Confidence            55567788999999632 2221          1233444444333  789999999999999999988652111 12345


Q ss_pred             HHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          134 IFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       134 ~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      .++.+...|++....   ..+.++|+.+
T Consensus       161 ~~~~~~~~y~~~~~~---~~~~~~id~~  185 (195)
T TIGR00041       161 FFEKVRQRYLELADK---EKSIHVIDAT  185 (195)
T ss_pred             HHHHHHHHHHHHHcC---CCcEEEEeCC
Confidence            677777888764432   4567778754

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK06217 hypothetical protein; Validated

Probab=99.34  E-value=6.7e-11  Score=100.71  Aligned_cols=104  Identities=18%  Similarity=0.214  Sum_probs=62.3

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccc-cC-CCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQ-SY-ASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~-~y-~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      |..|+|.|.|||||||+|++|++.++..+     +..|+  +...... .| .....+...+     .+...+..+..+|
T Consensus         1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~-----~~~D~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v   68 (183)
T PRK06217          1 MMRIHITGASGSGTTTLGAALAERLDIPH-----LDTDD--YFWLPTDPPFTTKRPPEERLR-----LLLEDLRPREGWV   68 (183)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCcE-----EEcCc--eeeccCCCCccccCCHHHHHH-----HHHHHHhcCCCEE
Confidence            78899999999999999999999987542     22222  1111110 01 1111111111     2223333456688


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +||.. . .++..   +...   ...+||+++|.++|.+|...|..
T Consensus        69 i~G~~-~-~~~~~---~~~~---~d~~i~Ld~~~~~~~~Rl~~R~~  106 (183)
T PRK06217         69 LSGSA-L-GWGDP---LEPL---FDLVVFLTIPPELRLERLRLREF  106 (183)
T ss_pred             EEccH-H-HHHHH---HHhh---CCEEEEEECCHHHHHHHHHcCcc
Confidence            99743 2 23222   2222   33489999999999999998863

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.34  E-value=3.5e-11  Score=96.81  Aligned_cols=135  Identities=19%  Similarity=0.189  Sum_probs=92.6

Q ss_pred             EccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC-------ccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            7 CGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD-------RNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         7 ~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~-------~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .|..||||||++..|++.|+..       +++-+.+|..       .+.-..+......+. .+...+.....++..+|+
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~-------fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~-~l~~~~~~~~~~~~~~vi   72 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAK-------FIDGDDLHPPANIEKMSAGIPLNDDDRWPWLE-ALGDAAASLAQKNKHVVI   72 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCc-------eecccccCCHHHHHHHhCCCCCCcchhhHHHH-HHHHHHHHhhcCCCceEE
Confidence            3899999999999999999864       3444445431       111223322222222 233333344455565666


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeC
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELC  159 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~  159 (303)
                      -....-++||+.|+..    .....+||++.+.+++.+|+..|..   +-.+.+.++....-.|+|...+    -.++|+
T Consensus        73 ~CSALKr~YRD~LR~~----~~~~~Fv~L~g~~~~i~~Rm~~R~g---HFM~~~ll~SQfa~LE~P~~de----~vi~id  141 (161)
T COG3265          73 ACSALKRSYRDLLREA----NPGLRFVYLDGDFDLILERMKARKG---HFMPASLLDSQFATLEEPGADE----DVLTID  141 (161)
T ss_pred             ecHHHHHHHHHHHhcc----CCCeEEEEecCCHHHHHHHHHhccc---CCCCHHHHHHHHHHhcCCCCCC----CEEEee
Confidence            6666888999888643    2347899999999999999999975   6689999999999999999643    355665


Q ss_pred             C
Q 047717          160 P  160 (303)
Q Consensus       160 ~  160 (303)
                      -
T Consensus       142 i  142 (161)
T COG3265         142 I  142 (161)
T ss_pred             C
Confidence            4

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.34  E-value=1e-11  Score=106.19  Aligned_cols=163  Identities=20%  Similarity=0.216  Sum_probs=102.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE-------------ecCC----------ccCCCc-cccC-CCch--
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRI-------------IDEA----------SFHLDR-NQSY-ASMP--   54 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~-------------~~~~----------~~~~~~-~~~y-~~~~--   54 (303)
                      +.|.|.||.||||||+|+.|+++|+..+++....+             +++.          .+.... ...| ....  
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs   84 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVS   84 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhh
Confidence            78999999999999999999999998764322110             1110          011111 1112 1110  


Q ss_pred             ----------------hhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcE-----EEEEEecCHH
Q 047717           55 ----------------AEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRY-----CVLYCDLEED  113 (303)
Q Consensus        55 ----------------~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~-----~vI~l~~~~e  113 (303)
                                      ....+|..+....++....+..+|+||               +..|+-+     ..||++++++
T Consensus        85 ~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dG---------------RDiGTvV~PdA~lKiFLtAS~e  149 (222)
T COG0283          85 EEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADG---------------RDIGTVVFPDAELKIFLTASPE  149 (222)
T ss_pred             hhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEec---------------CCCcceECCCCCeEEEEeCCHH
Confidence                            012444444433433444557799999               4555533     4799999998


Q ss_pred             H-HHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717          114 H-CRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKK  182 (303)
Q Consensus       114 ~-~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~  182 (303)
                      + +.+|..+....+....-++++.++..|.+.  +++|-.+||.....+ -.++++...++|+++.+++.
T Consensus       150 ~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~--D~~R~~~PLk~A~DA-~~iDTs~msieeVv~~il~~  216 (222)
T COG0283         150 ERAERRYKQLQAKGFSEVFEELLAEIKERDER--DSNRAVAPLKPAEDA-LLLDTSSLSIEEVVEKILEL  216 (222)
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHhhhc--cccCcCCCCcCCCCe-EEEECCCCcHHHHHHHHHHH
Confidence            8 677777766543112236888889999886  678889998765543 34556677788888888753

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.33  E-value=2.4e-11  Score=104.03  Aligned_cols=154  Identities=22%  Similarity=0.212  Sum_probs=90.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-----cCCCccccCCCchh-----hHHH---H-HHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-----FHLDRNQSYASMPA-----EKNL---R-GVLRSEVD   68 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-----~~~~~~~~y~~~~~-----e~~~---r-~~l~~~v~   68 (303)
                      +|+|.|.+||||||+++.|+++++..       .+.+..     .+..-...|.+...     +..+   | ..+.....
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~-------~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~   73 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYE-------VVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALE   73 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCc-------cccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999986532       122211     01001123332110     0000   0 01111121


Q ss_pred             HhcCCCCEEEEcCCCCch----------HH----HHH----HHH-HHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC
Q 047717           69 RSVSKDNIIIVDSLNSIK----------GY----RYE----LWC-LARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA  129 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~~k----------~~----R~~----l~~-~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~  129 (303)
                       .+..+.+||+|-..+..          +.    .+.    ++. +......+.++||+++++++|.+|+.+|++..+..
T Consensus        74 -~~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~  152 (193)
T cd01673          74 -HLSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPEEQG  152 (193)
T ss_pred             -hcccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCcHhhhc
Confidence             24578999999753211          10    111    222 22224568899999999999999999997643223


Q ss_pred             CCHHHHHHHHHHhcCCCCC-CCCCCceeeeCCCCcc
Q 047717          130 YDDKIFEDLVRRFEKPDRR-NRWDSPLFELCPYKDA  164 (303)
Q Consensus       130 ~~~e~~~~l~~r~E~P~~~-~rwd~pl~~i~~~~~~  164 (303)
                      .+.+.+..+...|+.-... ..+..|.++++++..+
T Consensus       153 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~  188 (193)
T cd01673         153 IPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDANEAD  188 (193)
T ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCCEEEEECCccc
Confidence            4567888888888874432 2456789999876533

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.33  E-value=1.2e-11  Score=105.18  Aligned_cols=118  Identities=19%  Similarity=0.178  Sum_probs=72.5

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC---------ccccCCCchhhHHHHHHHHHHHHHhc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD---------RNQSYASMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~---------~~~~y~~~~~e~~~r~~l~~~v~~~L   71 (303)
                      +|+|+|.|+|||||||+|+.|++.++..++...-++..+......         ....+.+   .......+...+...+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~   79 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVP---LDTVLDLLKDAMVAAL   79 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHccc
Confidence            589999999999999999999999865422211000010000000         0001111   1122224444555567


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ..+..||+||....   ..+...+.+....+..+||+++|.+++.+|+.+|..
T Consensus        80 ~~~~~~i~dg~~~~---~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~  129 (188)
T TIGR01360        80 GTSKGFLIDGYPRE---VKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE  129 (188)
T ss_pred             CcCCeEEEeCCCCC---HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence            78889999996533   233334444555678899999999999999998864

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=99.32  E-value=2.3e-11  Score=98.08  Aligned_cols=162  Identities=20%  Similarity=0.252  Sum_probs=96.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--cCCCccccCCCchhhHHHHHHHHHHHHHhcCC-CCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSK-DNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~-~~~VI   78 (303)
                      ++|||+|++||||||+|-+|.+.|...  +.-.+.+|-+.  +++.+.-.|......+.+| .+- .|.+.+.. +-+-|
T Consensus        32 cviWiTGLSgSGKStlACaL~q~L~qr--gkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIR-Rig-eVaKLFADag~ici  107 (207)
T KOG0635|consen   32 CVIWITGLSGSGKSTLACALSQALLQR--GKLTYILDGDNVRHGLNKDLGFKAEDRNENIR-RIG-EVAKLFADAGVICI  107 (207)
T ss_pred             cEEEEeccCCCCchhHHHHHHHHHHhc--CceEEEecCcccccccccccCcchhhhhhhHH-HHH-HHHHHHhccceeee
Confidence            689999999999999999999999776  34445555443  3443344565444445565 333 34444443 33333


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH----HhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK----ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP  154 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~----~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p  154 (303)
                      ..-...++..|+.-+.+.+  ..++.-||+++|.++|.+|.-    ++.+.+    .-.-|..+-.-||.|..      |
T Consensus       108 aSlISPYR~dRdacRel~~--~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaG----kIKgFTGIddPYEaP~~------c  175 (207)
T KOG0635|consen  108 ASLISPYRKDRDACRELLP--EGDFIEVFMDVPLEVCEARDPKGLYKLARAG----KIKGFTGIDDPYEAPLN------C  175 (207)
T ss_pred             ehhcCchhccHHHHHHhcc--CCCeEEEEecCcHHHhhccCchhHHHHHhcc----cccccccCCCcccCCCC------c
Confidence            2222334444544444433  348899999999999999864    333322    11224455567888774      5


Q ss_pred             eeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          155 LFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       155 l~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      -+++...+...+  ++-.+.|++.|.+
T Consensus       176 Ei~l~~~~~~sp--~~mae~iv~YL~~  200 (207)
T KOG0635|consen  176 EIVLKSHESSSP--EEMAEIIVSYLDN  200 (207)
T ss_pred             EEEEccCCCCCH--HHHHHHHHHHHhh
Confidence            677765432221  2345667777775

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.32  E-value=2.1e-11  Score=104.05  Aligned_cols=174  Identities=21%  Similarity=0.217  Sum_probs=103.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHH--HHH---HHHHHhcCCC-
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRG--VLR---SEVDRSVSKD-   74 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~--~l~---~~v~~~L~~~-   74 (303)
                      +++|+|.|+.|+||||+|+.|+++++..   .-...+++..+   -...|.+.......-+  -+.   ...+..++.+ 
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~---~~~E~vednp~---L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~   77 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFK---VFYELVEDNPF---LDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKN   77 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCc---eeeecccCChH---HHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            4689999999999999999999999843   11122222211   1123443221111000  011   1122333333 


Q ss_pred             ----CEEEEcC-C----CC-----ch----HHHHHHHHHH----HHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC-CC
Q 047717           75 ----NIIIVDS-L----NS-----IK----GYRYELWCLA----RAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA-YD  131 (303)
Q Consensus        75 ----~~VIvD~-~----n~-----~k----~~R~~l~~~a----k~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~-~~  131 (303)
                          +.|+-|. .    ++     .+    -|..-+..+.    ...+.|..+||++|+.++.++|+.+|++.-+.. ++
T Consensus        78 ~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~  157 (216)
T COG1428          78 NILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFD  157 (216)
T ss_pred             cccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCccccccc
Confidence                3344443 1    11     11    1222222112    223488999999999999999999999865422 22


Q ss_pred             --HHHHHHHHHHhcCCCCCCCCC-CceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717          132 --DKIFEDLVRRFEKPDRRNRWD-SPLFELCPYKDAIENSSAAILDAVAYLTKK  182 (303)
Q Consensus       132 --~e~~~~l~~r~E~P~~~~rwd-~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~  182 (303)
                        .+.+.++..+|..--  ..++ +|.+.++.+..+...++++++.++..|.+.
T Consensus       158 ~~~~Y~~~l~~~Y~~~~--~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~~~  209 (216)
T COG1428         158 ENKDYLKDLHRRYDDWF--ENYDACPVLGIDGDSIDFVNNEQDLEKVLDQILAK  209 (216)
T ss_pred             chHHHHHHHHHHHHHHH--HhcccCCeeeeccceecccCCHHHHHHHHHHHHHH
Confidence              368999999988621  2233 799999988777777788888888877753

>PRK13973 thymidylate kinase; Provisional

Probab=99.31  E-value=1.5e-10  Score=100.98  Aligned_cols=155  Identities=16%  Similarity=0.147  Sum_probs=89.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----c-------cccCCCchhhHH----HH-HHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----R-------NQSYASMPAEKN----LR-GVLRS   65 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~-------~~~y~~~~~e~~----~r-~~l~~   65 (303)
                      .+|+|.|.+||||||+++.|+++|...  +..++...+.+-...    +       ...+. ...+..    .| ..+..
T Consensus         4 ~~IviEG~dGsGKtTq~~~l~~~l~~~--g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~-~~~~~ll~~a~r~~~~~~   80 (213)
T PRK13973          4 RFITFEGGEGAGKSTQIRLLAERLRAA--GYDVLVTREPGGSPGAEAIRHVLLSGAAELYG-PRMEALLFAAARDDHVEE   80 (213)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEECCCCCchHHHHHHHHcCCCccCCC-HHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999765  455665543321100    0       00111 111111    11 12233


Q ss_pred             HHHHhcCCCCEEEEcCCCC----chH--------HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcC-CCCCC-
Q 047717           66 EVDRSVSKDNIIIVDSLNS----IKG--------YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKG-EAAYD-  131 (303)
Q Consensus        66 ~v~~~L~~~~~VIvD~~n~----~k~--------~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~-~~~~~-  131 (303)
                      .+..+|.+|.+||+|...+    +.+        +...+...+.....|.++||+++|++++.+|+.+|.... .+.+. 
T Consensus        81 ~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~  160 (213)
T PRK13973         81 VIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEK  160 (213)
T ss_pred             HHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhh
Confidence            4566788899999998542    111        222322222222468999999999999999999986421 12333 


Q ss_pred             --HHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          132 --DKIFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       132 --~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                        .+.++.....|..-..  .+...+++|+..
T Consensus       161 ~~~~~~~~~~~~y~~l~~--~~~~~~~~Ida~  190 (213)
T PRK13973        161 EDLAFHEKRREAFLQIAA--QEPERCVVIDAT  190 (213)
T ss_pred             chHHHHHHHHHHHHHHHH--hCCCcEEEEcCC
Confidence              2455555555554221  122235667654

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.31  E-value=1.4e-10  Score=100.06  Aligned_cols=154  Identities=16%  Similarity=0.092  Sum_probs=86.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc---cc----CCCchh-hHH------HHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN---QS----YASMPA-EKN------LRGVLRSEV   67 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~---~~----y~~~~~-e~~------~r~~l~~~v   67 (303)
                      ++|+|.|++||||||+++.|++++...+  ..++...+..-.....   ..    +.+... ...      ....+...+
T Consensus         4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i   81 (205)
T PRK00698          4 MFITIEGIDGAGKSTQIELLKELLEQQG--RDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVI   81 (205)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcC--CceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999987642  3344333221000000   00    111110 100      011233345


Q ss_pred             HHhcCCCCEEEEcCCCCc------------hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC---CH
Q 047717           68 DRSVSKDNIIIVDSLNSI------------KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY---DD  132 (303)
Q Consensus        68 ~~~L~~~~~VIvD~~n~~------------k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~---~~  132 (303)
                      ...+.+|.+||+|-..+.            ..+-+.+.........+.++||+++|++++.+|+.+|+..  +.+   +.
T Consensus        82 ~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~--~~~~~~~~  159 (205)
T PRK00698         82 KPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL--DRIEQEGL  159 (205)
T ss_pred             HHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc--chhhhhhH
Confidence            556778999999942211            1111122222222245789999999999999999999741  222   23


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          133 KIFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       133 e~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      +.+.++...|+.....  .....++++++
T Consensus       160 ~~~~~~~~~y~~~~~~--~~~~~~~Id~~  186 (205)
T PRK00698        160 DFFERVREGYLELAEK--EPERIVVIDAS  186 (205)
T ss_pred             HHHHHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            5666676667753321  22346777754

>PRK00625 shikimate kinase; Provisional

Probab=99.30  E-value=7.3e-12  Score=105.66  Aligned_cols=114  Identities=15%  Similarity=0.075  Sum_probs=63.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      .|+|+|+|||||||+++.|+++++..+++.+.++....+..  ....+.|.. ..+..+|..-...+ +.+..+..||..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~-~Ge~~fr~~E~~~l-~~l~~~~~VIs~   79 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQA-YGEEGFCREEFLAL-TSLPVIPSIVAL   79 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHH-HCHHHHHHHHHHHH-HHhccCCeEEEC
Confidence            48999999999999999999999764322221111101100  011112211 12334442222223 334445556655


Q ss_pred             C-CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           81 S-LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        81 ~-~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      | ......   +.++..+..   .++||+++|.+++.+|+.+|+.
T Consensus        80 GGg~~~~~---e~~~~l~~~---~~Vv~L~~~~e~l~~Rl~~R~~  118 (173)
T PRK00625         80 GGGTLMIE---PSYAHIRNR---GLLVLLSLPIATIYQRLQKRGL  118 (173)
T ss_pred             CCCccCCH---HHHHHHhcC---CEEEEEECCHHHHHHHHhcCCC
Confidence            4 333333   334433433   4599999999999999998864

>PRK01184 hypothetical protein; Provisional

Probab=99.28  E-value=4.2e-11  Score=101.84  Aligned_cols=114  Identities=13%  Similarity=0.172  Sum_probs=63.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC---chhh--HHHHH-----HHHHHHHHh
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS---MPAE--KNLRG-----VLRSEVDRS   70 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~---~~~e--~~~r~-----~l~~~v~~~   70 (303)
                      |.+|+|+|+|||||||+|+ +++.++.     .++..+|.--.......+..   ...+  ...+.     .+...+...
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~-----~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-IAREMGI-----PVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPK   74 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHHcCC-----cEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            8999999999999999987 6666654     34443321000000000100   0000  01111     111111122


Q ss_pred             c--CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           71 V--SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        71 L--~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +  ..+..||+|+. ........+.   +..+..+.+|+++||.+++.+|+..|.+
T Consensus        75 i~~~~~~~vvidg~-r~~~e~~~~~---~~~~~~~~~i~v~~~~~~~~~Rl~~R~~  126 (184)
T PRK01184         75 IREKGDEVVVIDGV-RGDAEVEYFR---KEFPEDFILIAIHAPPEVRFERLKKRGR  126 (184)
T ss_pred             HHhcCCCcEEEeCC-CCHHHHHHHH---HhCCcccEEEEEECCHHHHHHHHHHcCC
Confidence            2  24678999996 2333333332   2234467899999999999999998864

>PRK13949 shikimate kinase; Provisional

Probab=99.27  E-value=2.4e-11  Score=102.25  Aligned_cols=113  Identities=19%  Similarity=0.190  Sum_probs=65.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      |.-|+|+|+|||||||+++.|++.++...++.+..+..  .++..-...|. ...+...|......+......+..||.+
T Consensus         1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~--~~~~~~~~~~~-~~g~~~fr~~e~~~l~~l~~~~~~vis~   77 (169)
T PRK13949          1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIEN--RFHKTVGDIFA-ERGEAVFRELERNMLHEVAEFEDVVIST   77 (169)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHH--HHCccHHHHHH-HhCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence            67799999999999999999999997643332211110  11111111222 1123344433343444433345667767


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      |......  ++-+...+..+.   +||+++|.+++.+|+..
T Consensus        78 Ggg~~~~--~~~~~~l~~~~~---vi~L~~~~~~~~~Ri~~  113 (169)
T PRK13949         78 GGGAPCF--FDNMELMNASGT---TVYLKVSPEVLFVRLRL  113 (169)
T ss_pred             CCcccCC--HHHHHHHHhCCe---EEEEECCHHHHHHHHhc
Confidence            6433211  112223355554   89999999999999974

>PRK02496 adk adenylate kinase; Provisional

Probab=99.26  E-value=2.7e-11  Score=103.12  Aligned_cols=135  Identities=16%  Similarity=0.194  Sum_probs=78.8

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCccc-------cC---CCchhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRNQ-------SY---ASMPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~~-------~y---~~~~~e~~~r~~l~~~v~~   69 (303)
                      |+-|+|.|+|||||||+|+.|++.++..     .+..++.-. .+....       .|   .....+......+...+.+
T Consensus         1 ~~~i~i~G~pGsGKst~a~~la~~~~~~-----~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~   75 (184)
T PRK02496          1 MTRLIFLGPPGAGKGTQAVVLAEHLHIP-----HISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQ   75 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhC
Confidence            7779999999999999999999998754     222221100 000000       00   0000111111122222221


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      . .....+|+||......+...+.......+ .+..+|++++|.+++.+|+..|++.   ...++.+.+....|+.
T Consensus        76 ~-~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~---dd~~~~~~~r~~~y~~  147 (184)
T PRK02496         76 P-DAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK---DDTEEVIRRRLEVYRE  147 (184)
T ss_pred             c-CccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC---CCCHHHHHHHHHHHHH
Confidence            1 23357999997665555444444444443 4678999999999999999999652   3356666666665554

>PRK13946 shikimate kinase; Provisional

Probab=99.26  E-value=3e-11  Score=102.97  Aligned_cols=161  Identities=13%  Similarity=0.110  Sum_probs=89.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      ..|+|+|+|||||||+++.|++.|+..+++.+.....  ..+......+. ...+..++..-...+...+..+..||..+
T Consensus        11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~--~~g~~~~e~~~-~~ge~~~~~~e~~~l~~l~~~~~~Vi~~g   87 (184)
T PRK13946         11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIER--AARMTIAEIFA-AYGEPEFRDLERRVIARLLKGGPLVLATG   87 (184)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHH--HhCCCHHHHHH-HHCHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence            4799999999999999999999997654333321100  01111111111 11233444333444555555667777775


Q ss_pred             C--CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCCceee
Q 047717           82 L--NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDSPLFE  157 (303)
Q Consensus        82 ~--n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~  157 (303)
                      .  ...+..|..+.    ..+   .+|||++|.+++.+|+..|...+-  ...+.+.++++..++++ .    |...-++
T Consensus        88 gg~~~~~~~r~~l~----~~~---~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~-~----y~~~dl~  155 (184)
T PRK13946         88 GGAFMNEETRAAIA----EKG---ISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYP-V----YAEADLT  155 (184)
T ss_pred             CCCcCCHHHHHHHH----cCC---EEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHH-H----HHhCCEE
Confidence            3  34444444432    233   589999999999999998764210  11234677777766553 2    2222356


Q ss_pred             eCCCCcccccchHHHHHHHHHHH
Q 047717          158 LCPYKDAIENSSAAILDAVAYLT  180 (303)
Q Consensus       158 i~~~~~~~~~~~~~~~ei~~~l~  180 (303)
                      +++....+   +...++|+++|.
T Consensus       156 i~~~~~~~---~~~~~~i~~~i~  175 (184)
T PRK13946        156 VASRDVPK---EVMADEVIEALA  175 (184)
T ss_pred             EECCCCCH---HHHHHHHHHHHH
Confidence            66543322   233444444443

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.25  E-value=1.2e-10  Score=98.12  Aligned_cols=116  Identities=20%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--C-C----ccccC--CC------chhhHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--L-D----RNQSY--AS------MPAEKNLRGVLRSE   66 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~-~----~~~~y--~~------~~~e~~~r~~l~~~   66 (303)
                      .+|+|.|.|+|||||+|+.|++.+...     .+.++-+.+.  + .    ....+  ..      ......++ .+...
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p-----~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~   75 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEP-----WLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYA-AMHAA   75 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS------EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHH-HHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCC-----eEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHH-HHHHH
Confidence            489999999999999999999998754     2333311110  1 0    00011  10      11112233 55566


Q ss_pred             HHHhcCCCCEEEEcCCCCchHH-HHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhc
Q 047717           67 VDRSVSKDNIIIVDSLNSIKGY-RYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEK  125 (303)
Q Consensus        67 v~~~L~~~~~VIvD~~n~~k~~-R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~  125 (303)
                      +....+.|..||+|.......+ .+.+..+.  .+.++.+|-+.||.+++.+|...|+.+
T Consensus        76 iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L--~~~~vl~VgV~Cpleil~~RE~~RgDR  133 (174)
T PF07931_consen   76 IAAMARAGNNVIVDDVFLGPRWLQDCLRRLL--AGLPVLFVGVRCPLEILERRERARGDR  133 (174)
T ss_dssp             HHHHHHTT-EEEEEE--TTTHHHHHHHHHHH--TTS-EEEEEEE--HHHHHHHHHHHTSS
T ss_pred             HHHHHhCCCCEEEecCccCcHHHHHHHHHHh--CCCceEEEEEECCHHHHHHHHHhcCCc
Confidence            7777789999999987665554 22222222  378899999999999999999999863

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.24  E-value=1.5e-11  Score=106.09  Aligned_cols=118  Identities=25%  Similarity=0.296  Sum_probs=75.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC----------chhhHHHHHHHHHHHHHhcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS----------MPAEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~----------~~~e~~~r~~l~~~v~~~L~   72 (303)
                      +|++.|.|||||||++..+.+.+.    ....+.++.+.+..... .|..          .........+....+..++.
T Consensus        17 ~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~   91 (199)
T PF06414_consen   17 LIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHP-DYDELLKADPDEASELTQKEASRLAEKLIEYAIE   91 (199)
T ss_dssp             EEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGST-THHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhcc-chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999998874    12345555443321000 1111          11223333355556677788


Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhc
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEK  125 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~  125 (303)
                      .+..+|+|+++....+-.++...+++.|+.+.++++.+|++.++.|...|...
T Consensus        92 ~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~  144 (199)
T PF06414_consen   92 NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEE  144 (199)
T ss_dssp             CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHH
T ss_pred             cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHc
Confidence            89999999999887777767788899999999999999999999999998653

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.24  E-value=2.7e-10  Score=99.86  Aligned_cols=172  Identities=16%  Similarity=0.101  Sum_probs=94.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCcc---EEEecCCc-cCCC--------ccccCCCch--------hh-HHH--
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKET---VRIIDEAS-FHLD--------RNQSYASMP--------AE-KNL--   59 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~---v~~~~~~~-~~~~--------~~~~y~~~~--------~e-~~~--   59 (303)
                      +|+|.|..||||||+++.|+++++...+..+   .....+.. ..+.        -...|.+..        .+ ..+  
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            5899999999999999999999875321111   00000000 0000        001232211        00 001  


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEcCCCC--------------chHHHHHHHH-H----HHHcCCcEEEEEEecCHHHHHHHH
Q 047717           60 R-GVLRSEVDRSVSKDNIIIVDSLNS--------------IKGYRYELWC-L----ARAAGIRYCVLYCDLEEDHCRKWN  119 (303)
Q Consensus        60 r-~~l~~~v~~~L~~~~~VIvD~~n~--------------~k~~R~~l~~-~----ak~~~~~~~vI~l~~~~e~~~~R~  119 (303)
                      | ..+...+...+..|.+||+|...+              ..+.-+.++. +    ......|..+||+++|++.+.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence            1 122233444567788999998632              1111122222 1    122245789999999999999999


Q ss_pred             HHhhhcCCCCCCHHHHHHHHHHhcCCCCC-CCCCCceeeeCCCCcccccchHHHHHHHHHHH
Q 047717          120 KERHEKGEAAYDDKIFEDLVRRFEKPDRR-NRWDSPLFELCPYKDAIENSSAAILDAVAYLT  180 (303)
Q Consensus       120 ~~R~~~~~~~~~~e~~~~l~~r~E~P~~~-~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~  180 (303)
                      .+|++..+...+.+.++.+...|+.-... .+-.++.++++.+.      ...+++|++.|.
T Consensus       161 ~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~------~~~~e~i~~~I~  216 (219)
T cd02030         161 KKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTE------AGDTEKVVEDIE  216 (219)
T ss_pred             HHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCC------hhhHHHHHHHHH
Confidence            99886433446677777777777542100 00124778887531      234677776654

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.23  E-value=2.4e-11  Score=101.85  Aligned_cols=148  Identities=16%  Similarity=0.131  Sum_probs=75.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      ++|+|+|+|||||||+|+.|++.++...     +..|+.   ..+......+.. ..+..++......+...+.....||
T Consensus         5 ~~i~l~G~~GsGKstla~~La~~l~~~~-----~d~d~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~~~~l~~~~~~vi   78 (175)
T PRK00131          5 PNIVLIGFMGAGKSTIGRLLAKRLGYDF-----IDTDHLIEARAGKSIPEIFEE-EGEAAFRELEEEVLAELLARHNLVI   78 (175)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCE-----EEChHHHHHHcCCCHHHHHHH-HCHHHHHHHHHHHHHHHHhcCCCEE
Confidence            5899999999999999999999997542     222211   111110111110 1122233233333444444444555


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCHHHHHHHHHHhcCCCCCCCCCCcee
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDDKIFEDLVRRFEKPDRRNRWDSPLF  156 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~e~~~~l~~r~E~P~~~~rwd~pl~  156 (303)
                      ..+....  ++...+...+.   ...+||+++|.+.+.+|..+|.......  ...+.+..+..+.... ..   ....+
T Consensus        79 ~~g~~~~--~~~~~r~~l~~---~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~---~~~dl  149 (175)
T PRK00131         79 STGGGAV--LREENRALLRE---RGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPL-YE---EVADI  149 (175)
T ss_pred             EeCCCEe--ecHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHH-HH---hhcCe
Confidence            5553221  11122222232   3468999999999999998765421111  1234455555443321 10   11347


Q ss_pred             eeCCCCcc
Q 047717          157 ELCPYKDA  164 (303)
Q Consensus       157 ~i~~~~~~  164 (303)
                      +++++...
T Consensus       150 ~idt~~~~  157 (175)
T PRK00131        150 TVETDGRS  157 (175)
T ss_pred             EEeCCCCC
Confidence            78765443

>PRK13947 shikimate kinase; Provisional

Probab=99.23  E-value=8.5e-11  Score=98.60  Aligned_cols=114  Identities=15%  Similarity=0.120  Sum_probs=63.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      |.-|+|+|+|||||||+|+.|++.|+..+++.+..+-.  ..+....+.|. ...+..++..-...++.....+..||..
T Consensus         1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~--~~g~~~~~~~~-~~ge~~~~~~e~~~~~~l~~~~~~vi~~   77 (171)
T PRK13947          1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEK--MTGMTVAEIFE-KDGEVRFRSEEKLLVKKLARLKNLVIAT   77 (171)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhh--hcCCcHHHHHH-HhChHHHHHHHHHHHHHHhhcCCeEEEC
Confidence            78899999999999999999999998653322221100  11111111111 1223344433232333333344555544


Q ss_pred             CCCC--chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           81 SLNS--IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        81 ~~n~--~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +..+  ....+    ...+..+   .+||++++.+.+.+|...|..
T Consensus        78 g~g~vl~~~~~----~~l~~~~---~vv~L~~~~~~l~~Rl~~r~~  116 (171)
T PRK13947         78 GGGVVLNPENV----VQLRKNG---VVICLKARPEVILRRVGKKKS  116 (171)
T ss_pred             CCCCcCCHHHH----HHHHhCC---EEEEEECCHHHHHHHhcCCCC
Confidence            4322  12222    2223333   499999999999999987643

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.22  E-value=1e-10  Score=102.18  Aligned_cols=115  Identities=14%  Similarity=0.180  Sum_probs=67.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCccc--------cCCC--chhhHHHHHHHHHHHHHhc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRNQ--------SYAS--MPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~~--------~y~~--~~~e~~~r~~l~~~v~~~L   71 (303)
                      .|+|.|+|||||||+|+.|+++++..+     +..++.-.. +....        ....  ..........+...+.. .
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~-----is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~-~   75 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPH-----ISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQ-P   75 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE-----EECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhc-c
Confidence            389999999999999999999987643     332221000 00000        0000  00111112122222211 1


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhh
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      ..+..+|+||..........+.......+. ..++|+++||.+++.+|+..|.
T Consensus        76 ~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~  128 (215)
T PRK00279         76 DCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR  128 (215)
T ss_pred             CccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence            123479999976665555555444455554 4589999999999999999985

>PLN02924 thymidylate kinase

Probab=99.22  E-value=2.7e-10  Score=99.81  Aligned_cols=137  Identities=21%  Similarity=0.195  Sum_probs=82.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----ccccC-----CCchhhH----HHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----RNQSY-----ASMPAEK----NLRGVLRSEVD   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~~~~y-----~~~~~e~----~~r~~l~~~v~   68 (303)
                      ++|+|.|.+||||||+++.|+++|...+  ..+....+......    -....     -+...+.    .-|......+.
T Consensus        17 ~~IviEGiDGsGKsTq~~~L~~~l~~~g--~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I~   94 (220)
T PLN02924         17 ALIVLEGLDRSGKSTQCAKLVSFLKGLG--VAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLME   94 (220)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcC--CCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999998764  34444332211000    00000     0111110    11111223466


Q ss_pred             HhcCCCCEEEEcCCCC-------chHHHHHHH-HHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC-CHHHHHHHH
Q 047717           69 RSVSKDNIIIVDSLNS-------IKGYRYELW-CLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY-DDKIFEDLV  139 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~-------~k~~R~~l~-~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~-~~e~~~~l~  139 (303)
                      .+|..|.+||+|-..+       .++...++. .+....-.|.++|||++|++++.+|...+.    +.+ ..+.+.++.
T Consensus        95 pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~----~~~E~~~~~~rv~  170 (220)
T PLN02924         95 RKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG----ERYEKLEFQKKVA  170 (220)
T ss_pred             HHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc----cccccHHHHHHHH
Confidence            7888999999998654       122222221 122223468999999999999999865322    223 346777777


Q ss_pred             HHhcC
Q 047717          140 RRFEK  144 (303)
Q Consensus       140 ~r~E~  144 (303)
                      ..|..
T Consensus       171 ~~Y~~  175 (220)
T PLN02924        171 KRFQT  175 (220)
T ss_pred             HHHHH
Confidence            77765

>PRK03839 putative kinase; Provisional

Probab=99.22  E-value=1.7e-10  Score=97.76  Aligned_cols=100  Identities=20%  Similarity=0.193  Sum_probs=58.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      .|+|+|+|||||||+|+.|++.++..+     +..++.-....-...+.+ ..+...+ .+...+...+. +..||+||.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~-----id~d~~~~~~~~~~~~~~-~~~~~~~-~l~~~~~~~~~-~~~vIidG~   73 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEY-----VDLTEFALKKGIGEEKDD-EMEIDFD-KLAYFIEEEFK-EKNVVLDGH   73 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE-----EehhhhhhhcCCcccCCh-hhhcCHH-HHHHHHHHhcc-CCCEEEEec
Confidence            599999999999999999999997643     223321000000011111 1111223 23233333333 456899984


Q ss_pred             CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      +..         + .   .+..+||++++++++.+|+..|.
T Consensus        74 ~~~---------l-~---~~~~vi~L~~~~~~~~~Rl~~R~  101 (180)
T PRK03839         74 LSH---------L-L---PVDYVIVLRAHPKIIKERLKERG  101 (180)
T ss_pred             ccc---------c-c---CCCEEEEEECCHHHHHHHHHHcC
Confidence            310         1 1   23458999999999999998875

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.21  E-value=1.3e-10  Score=96.85  Aligned_cols=160  Identities=16%  Similarity=0.181  Sum_probs=91.5

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      |+-|+|+|++||||||+++.||+.|+..+++.|..+-..  .+..-..+|.. ..|...|..-...+.+.+..+..||.-
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~--~g~sI~eIF~~-~GE~~FR~~E~~vl~~l~~~~~~ViaT   78 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR--TGMSIAEIFEE-EGEEGFRRLETEVLKELLEEDNAVIAT   78 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH--HCcCHHHHHHH-HhHHHHHHHHHHHHHHHhhcCCeEEEC
Confidence            346899999999999999999999987654444332221  12211223321 235566644444455555565677777


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC-C-CCCHHHHHHHHHH----hcCCCCCCCCCCc
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE-A-AYDDKIFEDLVRR----FEKPDRRNRWDSP  154 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~-~-~~~~e~~~~l~~r----~E~P~~~~rwd~p  154 (303)
                      |.-..-  ..+-+...+..+   .+||+++|.++..+|.......+. . .-+.+.+++++..    |++        .-
T Consensus        79 GGG~v~--~~enr~~l~~~g---~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e--------~a  145 (172)
T COG0703          79 GGGAVL--SEENRNLLKKRG---IVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYRE--------VA  145 (172)
T ss_pred             CCcccc--CHHHHHHHHhCC---eEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHH--------hC
Confidence            644321  123333445555   499999999999999983322110 1 1122555555553    443        23


Q ss_pred             eeeeCCCCcccccchHHHHHHHHHHH
Q 047717          155 LFELCPYKDAIENSSAAILDAVAYLT  180 (303)
Q Consensus       155 l~~i~~~~~~~~~~~~~~~ei~~~l~  180 (303)
                      .+++++++..    ....++|++.|.
T Consensus       146 ~~~~~~~~~~----~~v~~~i~~~l~  167 (172)
T COG0703         146 DFIIDTDDRS----EEVVEEILEALE  167 (172)
T ss_pred             cEEecCCCCc----HHHHHHHHHHHH
Confidence            5666654222    345566666554

>PLN02200 adenylate kinase family protein

Probab=99.20  E-value=7.1e-11  Score=104.46  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=67.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCC-C-----------ccccCCCchhhHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHL-D-----------RNQSYASMPAEKNLRGVLRSE   66 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~-~-----------~~~~y~~~~~e~~~r~~l~~~   66 (303)
                      .+|+|+|+|||||||+|+.|+++++..+     +..++.   .+.. .           .+..+.    .......+...
T Consensus        44 ~ii~I~G~PGSGKsT~a~~La~~~g~~h-----is~gdllR~~i~~~s~~~~~i~~~~~~G~~vp----~e~~~~~l~~~  114 (234)
T PLN02200         44 FITFVLGGPGSGKGTQCEKIVETFGFKH-----LSAGDLLRREIASNSEHGAMILNTIKEGKIVP----SEVTVKLIQKE  114 (234)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhCCeE-----EEccHHHHHHHhccChhHHHHHHHHHcCCCCc----HHHHHHHHHHH
Confidence            3789999999999999999999987542     222211   0000 0           000111    11111122222


Q ss_pred             HHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           67 VDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        67 v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +..  ..+..+|+||......++..+...+.  ..+..+|++++|.+++.+|..+|..
T Consensus       115 l~~--~~~~~~ILDG~Prt~~q~~~l~~~~~--~~pd~vi~Ld~~~e~~~~Rl~~R~~  168 (234)
T PLN02200        115 MES--SDNNKFLIDGFPRTEENRIAFERIIG--AEPNVVLFFDCPEEEMVKRVLNRNQ  168 (234)
T ss_pred             Hhc--CCCCeEEecCCcccHHHHHHHHHHhc--cCCCEEEEEECCHHHHHHHHHcCcC
Confidence            221  13457999997776666655543321  2466899999999999999998854

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.20  E-value=7.3e-10  Score=95.94  Aligned_cols=171  Identities=16%  Similarity=0.188  Sum_probs=102.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC----CccccCCC-----chhhH-----HHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL----DRNQSYAS-----MPAEK-----NLRGVLRSE   66 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~----~~~~~y~~-----~~~e~-----~~r~~l~~~   66 (303)
                      +.+|+|.|.-||||||.++.|+++|...+  .+|+...+.+...    -+......     ...+.     .....+...
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g--~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~   80 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKERLEERG--IKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV   80 (208)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999998874  4666665543211    01111111     11111     111134445


Q ss_pred             HHHhcCCCCEEEEcCCCC----ch--------HHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCH--
Q 047717           67 VDRSVSKDNIIIVDSLNS----IK--------GYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDD--  132 (303)
Q Consensus        67 v~~~L~~~~~VIvD~~n~----~k--------~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~--  132 (303)
                      +..++..|.+||+|-..+    +.        .+..++.+.+...-.|..++|+++|++++.+|..+|+.. .+.+..  
T Consensus        81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~-~~r~E~~~  159 (208)
T COG0125          81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL-RDRFEKED  159 (208)
T ss_pred             HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc-cchhhhHH
Confidence            666788999999996431    22        223333333333226899999999999999999999763 123433  


Q ss_pred             -HHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHH
Q 047717          133 -KIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT  180 (303)
Q Consensus       133 -e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~  180 (303)
                       +.+++....|.+-.  ..|....++|+.... +   +...++|.+.|.
T Consensus       160 ~~f~~kvr~~Y~~la--~~~~~r~~vIda~~~-~---e~v~~~i~~~l~  202 (208)
T COG0125         160 DEFLEKVREGYLELA--AKFPERIIVIDASRP-L---EEVHEEILKILK  202 (208)
T ss_pred             HHHHHHHHHHHHHHH--hhCCCeEEEEECCCC-H---HHHHHHHHHHHH
Confidence             35777777887633  222224778876532 2   334444444443

>PRK13808 adenylate kinase; Provisional

Probab=99.20  E-value=2.4e-10  Score=105.27  Aligned_cols=117  Identities=15%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCCC-----ccccCCCchhhHHHHHHHHHHHHHhc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHLD-----RNQSYASMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~~-----~~~~y~~~~~e~~~r~~l~~~v~~~L   71 (303)
                      |. |+|.|+|||||||+|+.|++.++..+++..-++..+..    .+..     ..+.+.   ....+...+...+... 
T Consensus         1 mr-Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lV---Pdeiv~~li~e~l~~~-   75 (333)
T PRK13808          1 MR-LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLV---PDEVVVGIISDRIEQP-   75 (333)
T ss_pred             CE-EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCC---CHHHHHHHHHHHHhcc-
Confidence            44 78899999999999999999987643222111111000    0000     000011   1122222333333221 


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHh
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R  122 (303)
                      .....+|+||......+...|..+....+ .+..+|+|++|.+++++|+..|
T Consensus        76 ~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R  127 (333)
T PRK13808         76 DAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR  127 (333)
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence            23467999997666665555554444333 4778999999999999999987

>PRK08118 topology modulation protein; Reviewed

Probab=99.18  E-value=1.7e-10  Score=96.84  Aligned_cols=101  Identities=21%  Similarity=0.236  Sum_probs=62.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      |+-|+|+|+|||||||+|+.|++.++..     ++.+|+.-..  .  .+.....+ .    +...+...+.. ..+|+|
T Consensus         1 m~rI~I~G~~GsGKSTlak~L~~~l~~~-----~~~lD~l~~~--~--~w~~~~~~-~----~~~~~~~~~~~-~~wVid   65 (167)
T PRK08118          1 MKKIILIGSGGSGKSTLARQLGEKLNIP-----VHHLDALFWK--P--NWEGVPKE-E----QITVQNELVKE-DEWIID   65 (167)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCC-----ceecchhhcc--c--CCcCCCHH-H----HHHHHHHHhcC-CCEEEe
Confidence            7889999999999999999999998754     3444422111  1  11111111 1    12223333433 568999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      |.. .... ..   ...   ....+||+++|.++|..|..+|..
T Consensus        66 G~~-~~~~-~~---~l~---~~d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         66 GNY-GGTM-DI---RLN---AADTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             CCc-chHH-HH---HHH---hCCEEEEEeCCHHHHHHHHHHHHH
Confidence            963 2222 11   112   245599999999999999999854

>PRK07933 thymidylate kinase; Validated

Probab=99.18  E-value=2e-09  Score=93.91  Aligned_cols=156  Identities=17%  Similarity=0.231  Sum_probs=88.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CC----cc---ccCCC---c-hhhHHH----HHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LD----RN---QSYAS---M-PAEKNL----RGVLR   64 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~----~~---~~y~~---~-~~e~~~----r~~l~   64 (303)
                      ++|+|.|+.||||||+++.|+++|...  +..|+...+...+  ..    +.   ..+.+   + ..+..+    |....
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~--g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~   78 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEAR--GRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGAR   78 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhH
Confidence            389999999999999999999999876  4456555433111  00    00   00101   1 111100    11111


Q ss_pred             HHHHHhcCCCCEEEEcCCCCch----HHH----------HHHHHHHH---HcCCcEEEEEEecCHHHHHHHHHHhhhcC-
Q 047717           65 SEVDRSVSKDNIIIVDSLNSIK----GYR----------YELWCLAR---AAGIRYCVLYCDLEEDHCRKWNKERHEKG-  126 (303)
Q Consensus        65 ~~v~~~L~~~~~VIvD~~n~~k----~~R----------~~l~~~ak---~~~~~~~vI~l~~~~e~~~~R~~~R~~~~-  126 (303)
                      ..+..+|.+|.+||+|...+..    +.+          ..+..+..   ....|.++||+++|++++.+|..+|+... 
T Consensus        79 ~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~  158 (213)
T PRK07933         79 DELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDA  158 (213)
T ss_pred             HHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccccC
Confidence            2355667889999999754321    111          11111221   11258999999999999999999986320 


Q ss_pred             ---CCCCC--HHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717          127 ---EAAYD--DKIFEDLVRRFEKPDRRNRWDSPLFELCP  160 (303)
Q Consensus       127 ---~~~~~--~e~~~~l~~r~E~P~~~~rwd~pl~~i~~  160 (303)
                         .+.+.  .+.+.++.+.|..-.. ..|....++++.
T Consensus       159 ~~~~d~~E~~~~f~~~v~~~Y~~~~~-~~~~~~~~~ida  196 (213)
T PRK07933        159 DRARDAYERDDGLQQRTGAVYAELAA-QGWGGPWLVVDP  196 (213)
T ss_pred             CcccccccccHHHHHHHHHHHHHHHH-hcCCCCeEEeCC
Confidence               02232  4566666666654221 114445667765

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.16  E-value=4.3e-10  Score=96.06  Aligned_cols=112  Identities=14%  Similarity=0.076  Sum_probs=68.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCccc--------cCC--CchhhHHHHHHHHHHHHHhcC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRNQ--------SYA--SMPAEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~~--------~y~--~~~~e~~~r~~l~~~v~~~L~   72 (303)
                      |+|+|+|||||||+|+.|++.++..     ++..++.-. ......        ...  ......    .+...+...+.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~-----~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~l~~~~l~   72 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLP-----HISTGDLLREEIASGTELGKKAKEYIDSGKLVPDE----IVIKLLKERLK   72 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCe-----EEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHH----HHHHHHHHHHh
Confidence            8999999999999999999998653     233322100 000000        000  000011    12222333333


Q ss_pred             ---CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           73 ---KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        73 ---~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                         .+..+|+||..........+.......+.+..+|++++|.+++.+|+.+|..
T Consensus        73 ~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~  127 (194)
T cd01428          73 KPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI  127 (194)
T ss_pred             cccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence               3567999997666555555554443334678899999999999999999875

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK08233 hypothetical protein; Provisional

Probab=99.16  E-value=1.1e-09  Score=92.42  Aligned_cols=111  Identities=18%  Similarity=0.134  Sum_probs=63.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccCCCc-hhhHHHHHHHHHHHHHhcCCC--C
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSYASM-PAEKNLRGVLRSEVDRSVSKD--N   75 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y~~~-~~e~~~r~~l~~~v~~~L~~~--~   75 (303)
                      .+|+|+|.|||||||+|+.|+++++..    .+...+........   ...+... ..+......+...+...++..  .
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   79 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLKNS----KALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVD   79 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCCC----ceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCce
Confidence            489999999999999999999998632    34444433221100   0001100 001111123444555555544  6


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +||+|+....  ...++.   ..   ...+||+++|.+++.+|..+|..
T Consensus        80 ~vivd~~~~~--~~~~~~---~~---~d~~i~l~~~~~~~~~R~~~R~~  120 (182)
T PRK08233         80 YIIVDYPFAY--LNSEMR---QF---IDVTIFIDTPLDIAMARRILRDF  120 (182)
T ss_pred             EEEEeeehhh--ccHHHH---HH---cCEEEEEcCCHHHHHHHHHHHHh
Confidence            7888875321  111111   11   34699999999999999887753

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.16  E-value=7.1e-10  Score=112.04  Aligned_cols=140  Identities=15%  Similarity=0.221  Sum_probs=89.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc--ccCCCch-hhHHHH--HHHHHHHHH-hcCCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN--QSYASMP-AEKNLR--GVLRSEVDR-SVSKDN   75 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~--~~y~~~~-~e~~~r--~~l~~~v~~-~L~~~~   75 (303)
                      .+|+|.|+||+||||+|+.|+++|++.+++.+++..++....+...  ..+.... .+...+  ..+...+.. .++.|.
T Consensus       216 ~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~Gg  295 (664)
T PTZ00322        216 LIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTDG  295 (664)
T ss_pred             eeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4899999999999999999999999887777777766543322111  1111111 111122  112111222 445688


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcCC----cEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717           76 IIIVDSLNSIKGYRYELWCLARAAGI----RYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRR  141 (303)
Q Consensus        76 ~VIvD~~n~~k~~R~~l~~~ak~~~~----~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r  141 (303)
                      ++|+|++|.....|..+....++.+.    .+..|.+.|+.....++|..|.........++...++..+
T Consensus       296 vaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~  365 (664)
T PTZ00322        296 VAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEV  365 (664)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            99999999999888877777777664    5667777888888889888776532222233444444444

>PRK14528 adenylate kinase; Provisional

Probab=99.14  E-value=5.9e-10  Score=95.22  Aligned_cols=118  Identities=16%  Similarity=0.183  Sum_probs=70.3

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCcc-------ccCCCc---hhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRN-------QSYASM---PAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~-------~~y~~~---~~e~~~r~~l~~~v~~   69 (303)
                      |+.|+|.|+|||||||+|+.|++.++..     ++..++.-. .+...       ..|.+.   .....+...+...+.+
T Consensus         1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~-----~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~   75 (186)
T PRK14528          1 MKNIIFMGPPGAGKGTQAKILCERLSIP-----QISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIRE   75 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCC-----eeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhC
Confidence            7889999999999999999999998754     333332100 00000       001000   0111111122222222


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHc-CCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAA-GIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~-~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      . .....+|+||.......-..+..+.... ..+..+|+++||.+++.+|+..|..
T Consensus        76 ~-~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~  130 (186)
T PRK14528         76 A-DCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE  130 (186)
T ss_pred             c-CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence            2 2346799999665555555555544332 3467899999999999999998853

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.13  E-value=1.3e-09  Score=93.07  Aligned_cols=109  Identities=15%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCcc--ccCCCchhhHHHH------------------H
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRN--QSYASMPAEKNLR------------------G   61 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~--~~y~~~~~e~~~r------------------~   61 (303)
                      +|+|+|++||||||+++.|+..++..     +. +.+.... ..+.  ..|.....+...+                  +
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg   77 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQREQTQ-----LL-VAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYG   77 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCe-----EE-EcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence            78999999999999999998876431     22 2211100 0000  0010000111000                  1


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           62 VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        62 ~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ... .+...+..+..||+||.      +.....+.+..+....+||+++|.+++.+|+..|.+
T Consensus        78 ~~~-~~~~~l~~g~~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~  133 (186)
T PRK10078         78 VGI-EIDLWLHAGFDVLVNGS------RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGR  133 (186)
T ss_pred             CcH-HHHHHHhCCCEEEEeCh------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC
Confidence            112 35567778888999875      222223445566678899999999999999998854

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.13  E-value=4.1e-09  Score=89.13  Aligned_cols=112  Identities=15%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-c-cCCCccccCCCchhhHH------------------HHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-S-FHLDRNQSYASMPAEKN------------------LRG   61 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-~-~~~~~~~~y~~~~~e~~------------------~r~   61 (303)
                      .+|+|+|+|||||||+++.|+..+...+   .+.+.... . -.......|.....+..                  +.+
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   78 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDP---RVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG   78 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCC---cEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence            4789999999999999999999875421   11111000 0 00000001110000000                  000


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           62 VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        62 ~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      . ...+...+.++..||+|+.   ...+..+    +.......+|||++|.+++.+|+..|.+
T Consensus        79 ~-~~~i~~~~~~g~~vv~~g~---~~~~~~~----~~~~~~~~~i~l~~~~~~~~~Rl~~R~~  133 (179)
T TIGR02322        79 I-PAEIDQWLEAGDVVVVNGS---RAVLPEA----RQRYPNLLVVNITASPDVLAQRLAARGR  133 (179)
T ss_pred             C-hHHHHHHHhcCCEEEEECC---HHHHHHH----HHHCCCcEEEEEECCHHHHHHHHHHcCC
Confidence            0 1123345567889999985   2222222    2223356899999999999999998854

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.12  E-value=2.3e-10  Score=94.05  Aligned_cols=112  Identities=18%  Similarity=0.130  Sum_probs=61.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLN   83 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n   83 (303)
                      |+|+|+|||||||+|+.|++.++...++.+.++..  ..+......+. ...+..++......+......+..||..+..
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~   78 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQ--RAGMSIPEIFA-EEGEEGFRELEREVLLLLLTKENAVIATGGG   78 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHH--HcCCCHHHHHH-HHCHHHHHHHHHHHHHHHhccCCcEEECCCC
Confidence            78999999999999999999997643222211100  00110011111 1112233322233444445555666665544


Q ss_pred             CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           84 SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        84 ~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      .+-....  +....   ....+||+.+|.+++.+|+.+|.
T Consensus        79 ~i~~~~~--~~~~~---~~~~~i~l~~~~e~~~~R~~~r~  113 (154)
T cd00464          79 AVLREEN--RRLLL---ENGIVVWLDASPEELLERLARDK  113 (154)
T ss_pred             ccCcHHH--HHHHH---cCCeEEEEeCCHHHHHHHhccCC
Confidence            3322111  11222   24469999999999999999885

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.12  E-value=7.8e-11  Score=96.24  Aligned_cols=110  Identities=16%  Similarity=0.212  Sum_probs=62.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC-CccCCCccc--cCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE-ASFHLDRNQ--SYASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~-~~~~~~~~~--~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      ++|.|.|+|||||||+|+.|+++++..+++...++.+- ...+++-.+  .|.....  .+...+........ ....||
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p--~iD~~iD~rq~e~a-~~~nvV   77 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDP--EIDKEIDRRQKELA-KEGNVV   77 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCc--hhhHHHHHHHHHHH-HcCCeE
Confidence            36999999999999999999999986532211111110 011111111  1111111  11111111111222 256788


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ++|.  ..+|      +++  ......||+.+|.++..+|+.+|..
T Consensus        78 legr--LA~W------i~k--~~adlkI~L~Apl~vRa~Ria~REg  113 (179)
T COG1102          78 LEGR--LAGW------IVR--EYADLKIWLKAPLEVRAERIAKREG  113 (179)
T ss_pred             Ehhh--hHHH------Hhc--cccceEEEEeCcHHHHHHHHHHhcC
Confidence            9983  2232      223  4566789999999999999999964

>PRK07261 topology modulation protein; Provisional

Probab=99.12  E-value=4.3e-10  Score=94.78  Aligned_cols=100  Identities=21%  Similarity=0.240  Sum_probs=62.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      -|+|+|.|||||||+|+.|++.++..     ++..|....  . . .+.....+     .+...+...+.++. +|+||+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~-----~i~~D~~~~--~-~-~~~~~~~~-----~~~~~~~~~~~~~~-wIidg~   66 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCP-----VLHLDTLHF--Q-P-NWQERDDD-----DMIADISNFLLKHD-WIIDGN   66 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCC-----eEecCCEEe--c-c-ccccCCHH-----HHHHHHHHHHhCCC-EEEcCc
Confidence            48999999999999999999887643     344332211  1 1 12211111     22234445566666 999997


Q ss_pred             CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +....+. .   .....   ..+||+++|..+|..|..+|.-
T Consensus        67 ~~~~~~~-~---~l~~a---d~vI~Ld~p~~~~~~R~lkR~~  101 (171)
T PRK07261         67 YSWCLYE-E---RMQEA---DQIIFLNFSRFNCLYRAFKRYL  101 (171)
T ss_pred             chhhhHH-H---HHHHC---CEEEEEcCCHHHHHHHHHHHHH
Confidence            5321211 1   12233   3499999999999999998864

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.12  E-value=3.6e-10  Score=94.25  Aligned_cols=117  Identities=17%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC----------chhhHHHHHHHHHHHHHhc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS----------MPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~----------~~~e~~~r~~l~~~v~~~L   71 (303)
                      |+|++.|.|||||-|+|..+++.++..+++..-++..+..-  . +.-|..          -...+.....+..++....
T Consensus         9 ~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~--~-gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~   85 (195)
T KOG3079|consen    9 PIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIAS--A-GSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSG   85 (195)
T ss_pred             CEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHcc--c-cChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999986433221111111000  0 001110          0112333434554444433


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhhc
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHEK  125 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~~  125 (303)
                      .+ ..+++||.......+..|.   +.++ .+..++|++|+.|+|.+|+..|++.
T Consensus        86 ~~-~~fLIDGyPR~~~q~~~fe---~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~  136 (195)
T KOG3079|consen   86 DS-NGFLIDGYPRNVDQLVEFE---RKIQGDPDFVLFFDCPEETMLKRLLHRGQS  136 (195)
T ss_pred             CC-CeEEecCCCCChHHHHHHH---HHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence            33 3499999776666665554   3343 5778999999999999999999874

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.11  E-value=3.9e-10  Score=94.69  Aligned_cols=114  Identities=14%  Similarity=0.116  Sum_probs=63.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      |..|+|+|+|||||||+|+.|++.++..+++.+.+.-.  ..+..... +.....+..++..-...+ +.+..+..||.-
T Consensus         2 ~~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~--~~g~~~~~-~~~~~g~~~~~~~e~~~~-~~~~~~~~vi~~   77 (171)
T PRK03731          2 TQPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS--TSNMTVAE-IVEREGWAGFRARESAAL-EAVTAPSTVIAT   77 (171)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH--HhCCCHHH-HHHHHCHHHHHHHHHHHH-HHhcCCCeEEEC
Confidence            45789999999999999999999997642221111100  01111011 111112334443333333 445555666665


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      |..+.-  +...+.+.+..+   .+||+++|++++.+|+..|.
T Consensus        78 ggg~vl--~~~~~~~l~~~~---~~v~l~~~~~~~~~Rl~~r~  115 (171)
T PRK03731         78 GGGIIL--TEENRHFMRNNG---IVIYLCAPVSVLANRLEANP  115 (171)
T ss_pred             CCCccC--CHHHHHHHHhCC---EEEEEECCHHHHHHHHcccc
Confidence            544321  112233334444   49999999999999998774

>PRK13948 shikimate kinase; Provisional

Probab=99.11  E-value=6.6e-10  Score=94.46  Aligned_cols=109  Identities=17%  Similarity=0.045  Sum_probs=66.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC-
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS-   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~-   81 (303)
                      .|+|+|+|||||||+++.|++.++...++.|..+..  .++....+.|. ...+..+|..-...+.+.+..+..||.-| 
T Consensus        12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~--~~g~si~~if~-~~Ge~~fR~~E~~~l~~l~~~~~~VIa~Gg   88 (182)
T PRK13948         12 WVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIER--VTGKSIPEIFR-HLGEAYFRRCEAEVVRRLTRLDYAVISLGG   88 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHH--HHhCCHHHHHH-HhCHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence            799999999999999999999997653333221111  11111112222 12345666444445555555566666643 


Q ss_pred             -CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           82 -LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        82 -~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                       +......|..+    +..+   .+||+++|.+++.+|+..
T Consensus        89 G~v~~~~n~~~l----~~~g---~vV~L~~~~e~l~~Rl~~  122 (182)
T PRK13948         89 GTFMHEENRRKL----LSRG---PVVVLWASPETIYERTRP  122 (182)
T ss_pred             cEEcCHHHHHHH----HcCC---eEEEEECCHHHHHHHhcC
Confidence             33344444433    3344   489999999999999954

>TIGR01351 adk adenylate kinases

Probab=99.10  E-value=2.8e-10  Score=98.99  Aligned_cols=114  Identities=16%  Similarity=0.206  Sum_probs=66.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCcccc-------CC---CchhhHHHHHHHHHHHHHhcC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRNQS-------YA---SMPAEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~~~-------y~---~~~~e~~~r~~l~~~v~~~L~   72 (303)
                      |+|.|+|||||||+|+.|++.++..+     +..++.-. .+.....       |.   .......+...+...+.....
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~-----is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~   76 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPH-----ISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD   76 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCe-----eehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc
Confidence            78999999999999999999987543     22222100 0000000       00   000112222233333332222


Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+..+|+||..........|......  .+..+|++++|.+++.+|...|..
T Consensus        77 ~~~~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~~  126 (210)
T TIGR01351        77 NENGFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRRI  126 (210)
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCCc
Confidence            35689999976655555444433211  467899999999999999998853

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK06696 uridine kinase; Validated

Probab=99.09  E-value=7.3e-10  Score=97.32  Aligned_cols=111  Identities=23%  Similarity=0.276  Sum_probs=65.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc-----------cccCCCchhhHHHHHHHHHHH---
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR-----------NQSYASMPAEKNLRGVLRSEV---   67 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~-----------~~~y~~~~~e~~~r~~l~~~v---   67 (303)
                      .+|.|+|.|||||||+|+.|++.|+..  +..+++++.+++....           .+.|....+-..+...+...+   
T Consensus        23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~--g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~~~  100 (223)
T PRK06696         23 LRVAIDGITASGKTTFADELAEEIKKR--GRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGPN  100 (223)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhccCC
Confidence            589999999999999999999999754  3455554433333211           111111111112221211100   


Q ss_pred             ---------------------HHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           68 ---------------------DRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        68 ---------------------~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                                           ...+..+.+||+||......   .+.      ..-..+|||+||.+++.+|...|.
T Consensus       101 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~---~~~------~~~d~~i~v~~~~e~~~~R~~~Rd  168 (223)
T PRK06696        101 GDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRP---ELR------DLWDYKIFLDTDFEVSRRRGAKRD  168 (223)
T ss_pred             CceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhh---hHH------hhCCEEEEEECCHHHHHHHHHHhh
Confidence                                 01123456899999754322   111      112369999999999999999886

>PRK14530 adenylate kinase; Provisional

Probab=99.09  E-value=3.2e-10  Score=99.03  Aligned_cols=117  Identities=16%  Similarity=0.186  Sum_probs=65.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCch-hhHHH-------HHHHHHHHHHhcCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMP-AEKNL-------RGVLRSEVDRSVSK   73 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~-~e~~~-------r~~l~~~v~~~L~~   73 (303)
                      |.|+|.|+|||||||+|+.|++.++..++...-++.......+  ........ ....+       .+.....+...+..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~--~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~   81 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDI--SDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD   81 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCc--ccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            5799999999999999999999997542211111111000000  00000000 00000       01122233344444


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ...+|+||..........+...    ..+..+||+++|.+++.+|+.+|..
T Consensus        82 ~~~~IldG~pr~~~q~~~l~~~----~~~d~vI~Ld~~~~~l~~Rl~~R~~  128 (215)
T PRK14530         82 ADGFVLDGYPRNLEQAEYLESI----TDLDVVLYLDVSEEELVDRLTGRRV  128 (215)
T ss_pred             CCCEEEcCCCCCHHHHHHHHHh----cCCCEEEEEeCCHHHHHHHHhCCCc
Confidence            5679999965555444443322    2356699999999999999998853

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.08  E-value=9e-10  Score=92.91  Aligned_cols=144  Identities=15%  Similarity=0.147  Sum_probs=73.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      ..|+|.|++||||||+++.|++.++...     +..|..   ..+..-...|. ...+..+|..-...+......+..||
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l~~~~-----vd~D~~i~~~~g~~i~~~~~-~~g~~~fr~~e~~~l~~l~~~~~~vi   78 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQLNMEF-----YDSDQEIEKRTGADIGWVFD-VEGEEGFRDREEKVINELTEKQGIVL   78 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHcCCcE-----EECCchHHHHhCcCHhHHHH-HhCHHHHHHHHHHHHHHHHhCCCEEE
Confidence            3699999999999999999999986542     222211   01110011111 11233344322223333333444454


Q ss_pred             EcCCC--CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717           79 VDSLN--SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDSP  154 (303)
Q Consensus        79 vD~~n--~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~p  154 (303)
                      .-|..  ..+..|    .+.+..+   .+||+++|.++|.+|+..+..++.  +..+.+.+..+...-+ |-. ..+  .
T Consensus        79 ~~ggg~v~~~~~~----~~l~~~~---~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~-~~Y-~~~--A  147 (172)
T PRK05057         79 ATGGGSVKSRETR----NRLSARG---VVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERN-PLY-EEI--A  147 (172)
T ss_pred             EcCCchhCCHHHH----HHHHhCC---EEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHH-HHH-Hhh--C
Confidence            44322  122222    2334444   499999999999999976543211  1112355666555432 111 001  3


Q ss_pred             eeeeCCCC
Q 047717          155 LFELCPYK  162 (303)
Q Consensus       155 l~~i~~~~  162 (303)
                      .++|++++
T Consensus       148 d~~idt~~  155 (172)
T PRK05057        148 DVTIRTDD  155 (172)
T ss_pred             CEEEECCC
Confidence            47777653

>PRK04040 adenylate kinase; Provisional

Probab=99.05  E-value=2e-09  Score=92.05  Aligned_cols=113  Identities=15%  Similarity=0.233  Sum_probs=61.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCC---------CchhhHHHHHHHHHHHHHhc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYA---------SMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~---------~~~~e~~~r~~l~~~v~~~L   71 (303)
                      |.+|+|+|.|||||||+++.|++.+..   +..++..++.-...-....+.         +......++......+. .+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~---~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~-~~   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKE---DYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIA-EM   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhcc---CCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHH-Hh
Confidence            568999999999999999999999841   223444443211000000110         00111222222222222 23


Q ss_pred             CCCCEEEEcCCCC-------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           72 SKDNIIIVDSLNS-------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        72 ~~~~~VIvD~~n~-------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      ..+..||+|+...       +.+.-.+   ..+.. .+..+|++.+|+++..+|..+
T Consensus        78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~---~~~~l-~pd~ii~l~a~p~~i~~Rrl~  130 (188)
T PRK04040         78 AGEGPVIVDTHATIKTPAGYLPGLPEW---VLEEL-NPDVIVLIEADPDEILMRRLR  130 (188)
T ss_pred             hcCCCEEEeeeeeeccCCCCcCCCCHH---HHhhc-CCCEEEEEeCCHHHHHHHHhc
Confidence            4566799999442       3332222   23444 567789999999987777663

>PRK14529 adenylate kinase; Provisional

Probab=99.05  E-value=1.3e-09  Score=95.37  Aligned_cols=120  Identities=14%  Similarity=0.143  Sum_probs=71.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc---ccCCCc---hhhHHHHHHHHHHHHHhcCCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN---QSYASM---PAEKNLRGVLRSEVDRSVSKD   74 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~---~~y~~~---~~e~~~r~~l~~~v~~~L~~~   74 (303)
                      |. |+|.|+|||||||+|+.|+++++..+++...++..+..-+....   ..|-..   .........+...+... . .
T Consensus         1 m~-I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~-~-~   77 (223)
T PRK14529          1 MN-ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD-G-K   77 (223)
T ss_pred             CE-EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc-C-C
Confidence            54 88899999999999999999998764433222211100000000   000000   00111111222222211 2 5


Q ss_pred             CEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhh
Q 047717           75 NIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        75 ~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      ..+|+||......+-..|.......+ .+..+|++++|.+++.+|+..|.
T Consensus        78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~  127 (223)
T PRK14529         78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR  127 (223)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence            67999998888877776666544433 45679999999999999999885

>PRK13975 thymidylate kinase; Provisional

Probab=99.05  E-value=3.3e-09  Score=90.94  Aligned_cols=167  Identities=14%  Similarity=0.152  Sum_probs=81.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-cCCCccccCC----CchhhH-H---HHHHHHHHHHHhcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-FHLDRNQSYA----SMPAEK-N---LRGVLRSEVDRSVS   72 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-~~~~~~~~y~----~~~~e~-~---~r~~l~~~v~~~L~   72 (303)
                      .+|+|.|++||||||+|+.|++.++..     ......+. ++-.-...+.    +..... .   -|......+...+.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~-----~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~   77 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNAF-----WTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLK   77 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCC-----eeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            489999999999999999999999742     11111110 0000000111    110000 0   01011112333444


Q ss_pred             CCCEEEEcCCCCch-------H-HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHhc
Q 047717           73 KDNIIIVDSLNSIK-------G-YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD-DKIFEDLVRRFE  143 (303)
Q Consensus        73 ~~~~VIvD~~n~~k-------~-~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~-~e~~~~l~~r~E  143 (303)
                      . ..||+|...+..       + ....+..+......+..+||+++|++++.+|+..|+.   +.+. .+.+.++...|+
T Consensus        78 ~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~---~~~~~~~~~~~~~~~y~  153 (196)
T PRK13975         78 K-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDK---EIFEKKEFLKKVQEKYL  153 (196)
T ss_pred             C-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCc---cccchHHHHHHHHHHHH
Confidence            4 679999532110       0 0111111222223467899999999999999998863   1222 344445554444


Q ss_pred             CCCCCCCC--CCceeeeCCCCcccccchHHHHHHHHHHH
Q 047717          144 KPDRRNRW--DSPLFELCPYKDAIENSSAAILDAVAYLT  180 (303)
Q Consensus       144 ~P~~~~rw--d~pl~~i~~~~~~~~~~~~~~~ei~~~l~  180 (303)
                      .-.....+  ....+++++++.++   ++..++|++.|.
T Consensus       154 ~~~~~~~~~~~~~~~~Id~~~~~~---eev~~~I~~~i~  189 (196)
T PRK13975        154 ELANNEKFMPKYGFIVIDTTNKSI---EEVFNEILNKIK  189 (196)
T ss_pred             HHHhhcccCCcCCEEEEECCCCCH---HHHHHHHHHHHH
Confidence            32111101  11357777642222   234455554444

>PRK06547 hypothetical protein; Provisional

Probab=99.04  E-value=2.3e-09  Score=90.40  Aligned_cols=110  Identities=19%  Similarity=0.148  Sum_probs=65.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHH--------------
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSE--------------   66 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~--------------   66 (303)
                      |.+|+|+|++||||||+|+.|++.++..     ++..|+.  ..... ..  ....+.+.+.+...              
T Consensus        15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~-----~~~~d~~--~~~~~-~~--~~~~~~l~~~~l~~g~~~~~~yd~~~~~   84 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLAGALAARTGFQ-----LVHLDDL--YPGWH-GL--AAASEHVAEAVLDEGRPGRWRWDWANNR   84 (172)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCC-----eecccce--ecccc-cC--ChHHHHHHHHHHhCCCCceecCCCCCCC
Confidence            4689999999999999999999987543     3333321  11000 00  11111222122100              


Q ss_pred             --HHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           67 --VDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        67 --v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                        ....+..+.+||+||.....   .++...+.+ +.....||+++|.+++.+|..+|..
T Consensus        85 ~~~~~~l~~~~vVIvEG~~al~---~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~  140 (172)
T PRK06547         85 PGDWVSVEPGRRLIIEGVGSLT---AANVALASL-LGEVLTVWLDGPEALRKERALARDP  140 (172)
T ss_pred             CCCcEEeCCCCeEEEEehhhcc---HHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCc
Confidence              00012345789999975442   334444443 3446799999999999999999964

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.04  E-value=1e-09  Score=90.91  Aligned_cols=133  Identities=21%  Similarity=0.239  Sum_probs=75.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--cCCCccccCCCch-----hhHHHHHHHHHHHHHhcCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--FHLDRNQSYASMP-----AEKNLRGVLRSEVDRSVSKD   74 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--~~~~~~~~y~~~~-----~e~~~r~~l~~~v~~~L~~~   74 (303)
                      |+|+|+|.||+||||+|+.|+ .++.     .++.+.+.-  .+.  ...|+...     +...++    ..+...+ ..
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~-----~~i~l~el~~e~~~--~~~~de~r~s~~vD~d~~~----~~le~~~-~~   67 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGY-----KVIELNELAKENGL--YTEYDELRKSVIVDVDKLR----KRLEELL-RE   67 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCC-----ceeeHHHHHHhcCC--eeccCCccceEEeeHHHHH----HHHHHHh-cc
Confidence            589999999999999999999 6654     355544321  111  01121111     122223    2233333 34


Q ss_pred             CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC---CCCCHHHHHHHHHHhcCCCCCCCC
Q 047717           75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE---AAYDDKIFEDLVRRFEKPDRRNRW  151 (303)
Q Consensus        75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~---~~~~~e~~~~l~~r~E~P~~~~rw  151 (303)
                      ...|+|+.            ++...+....+|.+.|+++++.+|+.+|+-..+   +....+.++-...  |   ..++|
T Consensus        68 ~~~Ivd~H------------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~--E---A~E~~  130 (180)
T COG1936          68 GSGIVDSH------------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILI--E---AVERF  130 (180)
T ss_pred             CCeEeech------------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH--H---HHHhc
Confidence            56888883            223334456799999999999999999975211   1122233332221  1   12234


Q ss_pred             CCceeeeCCCCccc
Q 047717          152 DSPLFELCPYKDAI  165 (303)
Q Consensus       152 d~pl~~i~~~~~~~  165 (303)
                       .+.+.+++.+.++
T Consensus       131 -~~v~evdtt~~s~  143 (180)
T COG1936         131 -EAVIEVDTTNRSP  143 (180)
T ss_pred             -CceEEEECCCCCH
Confidence             4788888775543

>PTZ00301 uridine kinase; Provisional

Probab=99.04  E-value=6.5e-09  Score=90.39  Aligned_cols=115  Identities=22%  Similarity=0.301  Sum_probs=65.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc-------c--cCCCc--hhhHHHHHHHHHHHH--
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN-------Q--SYASM--PAEKNLRGVLRSEVD--   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~-------~--~y~~~--~~e~~~r~~l~~~v~--   68 (303)
                      .+|.|+|.|||||||+|+.|++.+........+.++.+++++....       .  .|...  .+...+...+.....  
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g~   83 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSGK   83 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcCC
Confidence            4899999999999999999998875321112243455554443211       1  12111  111122222221110  


Q ss_pred             ------------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           69 ------------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        69 ------------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                                        ..+....+||+||.+...  ..++.   ...   .+.||+++|.++|..|..+|..
T Consensus        84 ~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~--~~~l~---~l~---D~~ifvd~~~d~~~~Rr~~Rd~  149 (210)
T PTZ00301         84 TVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFT--NAELR---NEM---DCLIFVDTPLDICLIRRAKRDM  149 (210)
T ss_pred             cccCCCcccccCCcCCceEEeCCCcEEEEechhhhC--CHHHH---HhC---CEEEEEeCChhHHHHHHHhhhH
Confidence                              012345789999976421  12222   222   3379999999999999988874

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.02  E-value=1e-08  Score=86.89  Aligned_cols=148  Identities=18%  Similarity=0.211  Sum_probs=83.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCCc---hhhHHHHHHHHHHHHHhcCCCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYASM---PAEKNLRGVLRSEVDRSVSKDN   75 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~~---~~e~~~r~~l~~~v~~~L~~~~   75 (303)
                      -|+|.|+|||||||+|+.|++.++..+++.........    .++... ..|-+.   .....+-+.+...+.+. ....
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~-k~~i~~g~lv~d~i~~~~v~~rl~~~-d~~~   79 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEI-KKYIDKGELVPDEIVNGLVKERLDEA-DCKA   79 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHH-HHHHHcCCccchHHHHHHHHHHHHhh-cccC
Confidence            47899999999999999999998754332221111100    000000 000000   00112222333333333 2223


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717           76 IIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP  154 (303)
Q Consensus        76 ~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p  154 (303)
                      .+|+|+....-.+-..+....+..+ ....++.++++.+....|...|...  ....++.+..-...|+.      +..|
T Consensus        80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r--~dd~~~~~~~R~~~y~~------~~~p  151 (178)
T COG0563          80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVR--EDDNEETVKKRLKVYHE------QTAP  151 (178)
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcccc--ccCCHHHHHHHHHHHHh------cccc
Confidence            8999998766555444555545555 4567899999999999999988521  12356666666666765      3446


Q ss_pred             eeeeCC
Q 047717          155 LFELCP  160 (303)
Q Consensus       155 l~~i~~  160 (303)
                      ++....
T Consensus       152 li~~y~  157 (178)
T COG0563         152 LIEYYS  157 (178)
T ss_pred             hhhhhe
Confidence            655543

>PRK07667 uridine kinase; Provisional

Probab=99.01  E-value=3.8e-09  Score=90.74  Aligned_cols=111  Identities=17%  Similarity=0.200  Sum_probs=64.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc----ccCCC-------chhhHHHHHHHHHHHHH-
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN----QSYAS-------MPAEKNLRGVLRSEVDR-   69 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~----~~y~~-------~~~e~~~r~~l~~~v~~-   69 (303)
                      .+|.|+|.|||||||+|+.|++.++..+....++..|+  +.....    ..+.+       ...-..+...+...+.. 
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd--~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~   95 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD--YIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE   95 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc--ccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence            47999999999999999999999976543333444443  221110    01110       00111111111111110 


Q ss_pred             --------------------hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           70 --------------------SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        70 --------------------~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                                          .+....+||+||.....   ..+..      .-..+||++||.+++.+|..+|.
T Consensus        96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~---~~~~~------~~d~~v~V~~~~~~~~~R~~~r~  160 (193)
T PRK07667         96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR---KEWRD------FFHYMVYLDCPRETRFLRESEET  160 (193)
T ss_pred             CeEEEeeeccccccccccceecCCCCEEEEEehhhhh---hhHHh------hceEEEEEECCHHHHHHHHhccc
Confidence                                12235789999986432   12221      23569999999999999998874

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.01  E-value=6.5e-09  Score=89.53  Aligned_cols=114  Identities=15%  Similarity=0.166  Sum_probs=71.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---------ccC-CCcc------ccCCCchhhHHHH-----
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---------SFH-LDRN------QSYASMPAEKNLR-----   60 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---------~~~-~~~~------~~y~~~~~e~~~r-----   60 (303)
                      .+|+++|.|||||||+|+.|++.++..     +++.+|.         ... ....      ..|.+...+...+     
T Consensus         4 ~~i~i~G~~G~GKst~a~~l~~~~~~~-----~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q   78 (197)
T PRK12339          4 TIHFIGGIPGVGKTSISGYIARHRAID-----IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQ   78 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCe-----EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHH
Confidence            589999999999999999999997642     2332221         000 0001      1343332221111     


Q ss_pred             -----HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEec-CHHHHHHHHHHhhhcC
Q 047717           61 -----GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDL-EEDHCRKWNKERHEKG  126 (303)
Q Consensus        61 -----~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~-~~e~~~~R~~~R~~~~  126 (303)
                           ..+...+.+.+..|..||+|+.+...+++...+    ..+  ..++++.+ +.+..++|...|....
T Consensus        79 ~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~----~~~--v~~i~l~v~d~e~lr~Rl~~R~~~~  144 (197)
T PRK12339         79 ARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR----TNN--IRAFYLYIRDAELHRSRLADRINYT  144 (197)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH----hcC--eEEEEEEeCCHHHHHHHHHHHhhcc
Confidence                 234455667888999999999999888874322    222  34555544 6778889999998643

>PRK08356 hypothetical protein; Provisional

Probab=98.99  E-value=1.1e-08  Score=88.00  Aligned_cols=110  Identities=14%  Similarity=0.150  Sum_probs=58.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC--CccccCC--------C-----ch--hhHHHH----
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL--DRNQSYA--------S-----MP--AEKNLR----   60 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~--~~~~~y~--------~-----~~--~e~~~r----   60 (303)
                      ++|+|+|+|||||||+|+.|++ ++.     .++..++.-...  .....|.        .     ..  ....++    
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~-~g~-----~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG   79 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE-KGF-----CRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYG   79 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCC-----cEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcC
Confidence            5899999999999999999964 443     233333210000  0000110        0     00  001111    


Q ss_pred             -HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           61 -GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        61 -~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                       ..+...+...+.....+++||. .....+..+    +..  ...+||+++|.+++.+|+.+|..
T Consensus        80 ~~~~~~~~~~~~~~~~~ividG~-r~~~q~~~l----~~~--~~~vi~l~~~~~~~~~Rl~~R~~  137 (195)
T PRK08356         80 EDILIRLAVDKKRNCKNIAIDGV-RSRGEVEAI----KRM--GGKVIYVEAKPEIRFERLRRRGA  137 (195)
T ss_pred             cHHHHHHHHHHhccCCeEEEcCc-CCHHHHHHH----Hhc--CCEEEEEECCHHHHHHHHHhcCC
Confidence             1111122223333346999996 332222222    222  23689999999999999998875

>PRK13974 thymidylate kinase; Provisional

Probab=98.99  E-value=4.1e-08  Score=85.56  Aligned_cols=123  Identities=18%  Similarity=0.181  Sum_probs=70.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccC---CccEEEecCCcc-CC--------Cccc-cCCCc-hhhHHH----H-HH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEA---KETVRIIDEASF-HL--------DRNQ-SYASM-PAEKNL----R-GV   62 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~---~~~v~~~~~~~~-~~--------~~~~-~y~~~-~~e~~~----r-~~   62 (303)
                      .+|+|.|++||||||+++.|++++...+.   +..++...+.+- ..        .... ..... ..+..+    | ..
T Consensus         4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~   83 (212)
T PRK13974          4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQH   83 (212)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHH
Confidence            48999999999999999999999975431   123444332210 00        0000 01111 111110    1 12


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCc----hH--------HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           63 LRSEVDRSVSKDNIIIVDSLNSI----KG--------YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        63 l~~~v~~~L~~~~~VIvD~~n~~----k~--------~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +...+...+.+|.+||+|-..+.    .+        +-.++...+...-.+.++||++||++++.+|+..|..
T Consensus        84 ~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d  157 (212)
T PRK13974         84 VSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP  157 (212)
T ss_pred             HHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc
Confidence            22335566788899999873211    11        1222322222222588899999999999999988753

>TIGR00017 cmk cytidylate kinase

Probab=98.98  E-value=2.2e-09  Score=93.93  Aligned_cols=163  Identities=14%  Similarity=0.159  Sum_probs=87.5

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE-------------ecCC--------ccCC----Ccc--ccCCCc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRI-------------IDEA--------SFHL----DRN--QSYASM   53 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~-------------~~~~--------~~~~----~~~--~~y~~~   53 (303)
                      +++|.|.|++||||||+++.|+++++..++....+.             +++.        .+++    ...  ..|-+.
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG   81 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence            168999999999999999999999886433222111             0000        0110    000  011100


Q ss_pred             -----------h--------hhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHH
Q 047717           54 -----------P--------AEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDH  114 (303)
Q Consensus        54 -----------~--------~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~  114 (303)
                                 .        ....+|..+.....+. .+...+|+||.. +-.+      +   .......||+++|.++
T Consensus        82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~-a~~~~~Vi~Gr~-~~~~------v---~~~a~~~ifl~a~~~~  150 (217)
T TIGR00017        82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQAL-AKNDGIIADGRD-IGTV------V---FPNAEVKIFLDASVEE  150 (217)
T ss_pred             cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhcCCEEEEEcC-cceE------E---eCCCCEEEEEECCHHH
Confidence                       0        1134454555444443 344568999841 1110      1   1124569999999999


Q ss_pred             HHHHHHHhhhcCCCCCC-HHHHHHHHHHhcCCCC--CCCCCCc--eeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          115 CRKWNKERHEKGEAAYD-DKIFEDLVRRFEKPDR--RNRWDSP--LFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       115 ~~~R~~~R~~~~~~~~~-~e~~~~l~~r~E~P~~--~~rwd~p--l~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      ..+|...|....+...+ +++...+..|.+....  ...|..+  -++++++       ...++++++.|.+
T Consensus       151 Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts-------~l~ieevv~~I~~  215 (217)
T TIGR00017       151 RAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTS-------NLSIDEVVEKILE  215 (217)
T ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECC-------CCCHHHHHHHHHH
Confidence            87777777542212233 5777777777654222  2224321  2445544       3446888877764

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.97  E-value=2.5e-09  Score=103.89  Aligned_cols=30  Identities=27%  Similarity=0.307  Sum_probs=26.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAK   31 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~   31 (303)
                      ++|+|.|++||||||+|+.|+++|+..+++
T Consensus       285 ~ii~i~G~sgsGKst~a~~la~~l~~~~~d  314 (512)
T PRK13477        285 PIIAIDGPAGAGKSTVTRAVAKKLGLLYLD  314 (512)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence            589999999999999999999999865443

>PRK04182 cytidylate kinase; Provisional

Probab=98.97  E-value=4.3e-10  Score=94.79  Aligned_cols=110  Identities=17%  Similarity=0.210  Sum_probs=57.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC-CccCCCcccc--CCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE-ASFHLDRNQS--YASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~-~~~~~~~~~~--y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      +|+|+|.|||||||+|+.|++.++...++.+-+...- ...+......  +....  ..+...+...+......+..+|+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Vi   79 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEED--PEIDKEIDRRQLEIAEKEDNVVL   79 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcC--chHHHHHHHHHHHHHhcCCCEEE
Confidence            7999999999999999999999875422210000000 0011100000  00000  00111222222222214456777


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      |+...  ++      +.+  .....+||+++|.+++.+|+..|..
T Consensus        80 ~g~~~--~~------~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~  114 (180)
T PRK04182         80 EGRLA--GW------MAK--DYADLKIWLKAPLEVRAERIAEREG  114 (180)
T ss_pred             EEeec--ce------Eec--CCCCEEEEEECCHHHHHHHHHhccC
Confidence            87421  10      111  1245789999999999999998853

>PRK13976 thymidylate kinase; Provisional

Probab=98.96  E-value=6.2e-08  Score=84.27  Aligned_cols=139  Identities=17%  Similarity=0.169  Sum_probs=81.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-C---CccccC----CCchhhH----HHH-HHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-L---DRNQSY----ASMPAEK----NLR-GVLRSEVD   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~---~~~~~y----~~~~~e~----~~r-~~l~~~v~   68 (303)
                      .+|+|.|..||||||+++.|++.|...+-...++...+.+-. .   -+....    .+...+.    .-| ..+...+.
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~   80 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL   80 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            379999999999999999999999764101244444332110 0   000000    1111111    011 12333456


Q ss_pred             HhcCCCCEEEEcCCCCc----hH--------HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHH
Q 047717           69 RSVSKDNIIIVDSLNSI----KG--------YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFE  136 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~~----k~--------~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~  136 (303)
                      .+|.+|.+||+|-..+.    .+        +-+++...+. ...|..+||+++|++++.+|..+|.-   +..+.+.+.
T Consensus        81 p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~-~~~PDl~i~Ldv~~e~a~~Ri~~~~~---e~~~~~~l~  156 (209)
T PRK13976         81 PALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVV-DKYPDITFVLDIDIELSLSRADKNGY---EFMDLEFYD  156 (209)
T ss_pred             HHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhh-CCCCCEEEEEeCCHHHHHHHhcccch---hcccHHHHH
Confidence            67789999999975431    11        1122222221 23689999999999999999864432   233567777


Q ss_pred             HHHHHhcC
Q 047717          137 DLVRRFEK  144 (303)
Q Consensus       137 ~l~~r~E~  144 (303)
                      ++.+.|..
T Consensus       157 ~v~~~Y~~  164 (209)
T PRK13976        157 KVRKGFRE  164 (209)
T ss_pred             HHHHHHHH
Confidence            77777775

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.95  E-value=5.7e-09  Score=91.49  Aligned_cols=119  Identities=22%  Similarity=0.326  Sum_probs=65.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc----------ccCCCchhhHHHHHHHHHHHH----
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN----------QSYASMPAEKNLRGVLRSEVD----   68 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~----------~~y~~~~~e~~~r~~l~~~v~----   68 (303)
                      +|.|+|++||||||+|+.|+..+.....+..+.+++.+++.....          ..+.+..+...+...+.....    
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~   80 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN   80 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence            588999999999999999999986411123445554444432111          112111111222222221111    


Q ss_pred             ------------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           69 ------------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        69 ------------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                                        ..+....+||+||.+........+..+..-.   .+.||+++|.+++.+|..+|..
T Consensus        81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~---D~~ifvd~~~~~~~~rl~~R~~  151 (220)
T cd02025          81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFF---DFSIYVDADEDDIEKWYIKRFL  151 (220)
T ss_pred             EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhC---CeEEEEECCHHHHHHHHHHHHH
Confidence                              0134567999999764422111111122222   3489999999999888877743

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.94  E-value=2.5e-09  Score=84.30  Aligned_cols=106  Identities=24%  Similarity=0.245  Sum_probs=55.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC--ccCCCccccCCCchhhHHHHHHHHHHHHHhc--CCCCEEE
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA--SFHLDRNQSYASMPAEKNLRGVLRSEVDRSV--SKDNIII   78 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~--~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L--~~~~~VI   78 (303)
                      +|+|+|+|||||||+|+.|++.++..     ++..|+.  ...... ...............+...+....  .....+|
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~-----~i~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i   74 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFP-----VISMDDLIREPGWIE-RDDDEREYIDADIDLLDDILEQLQNKPDNDNWI   74 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCE-----EEEEHHHHCCGTHCH-GCTTCCHHHHHHHHHHHHHHHHHHETTT--EEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCe-----EEEecceEEeccccc-cCcchhhHHHHHHHHHHHHHHhhhccCCCCeEE
Confidence            58999999999999999999998653     4555541  111110 011111111111223333333332  3567899


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R  122 (303)
                      +|+... .. .. + .. .   ....+||+.++.+.+.+|..+|
T Consensus        75 i~g~~~-~~-~~-~-~~-~---~~~~~i~l~~~~~~~~~~~~~R  110 (121)
T PF13207_consen   75 IDGSYE-SE-ME-I-RL-P---EFDHVIYLDAPDEECRERRLKR  110 (121)
T ss_dssp             EECCSC-HC-CH-S-CC-H---HGGCEEEEEEEEHHHHHHHHHH
T ss_pred             EeCCCc-cc-hh-h-hh-h---cCCEEEEEECCCHHHHHHHHHH
Confidence            999432 11 11 1 00 1   1225889998888666555544

...

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.94  E-value=2.5e-09  Score=86.95  Aligned_cols=123  Identities=20%  Similarity=0.202  Sum_probs=66.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC-chhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS-MPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~-~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      +|+|+|.|||||||+|+.|++.++..+++.+       .+.......+.. ......++..+...... +..+..+|+||
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~-------~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~Vidg   72 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG-------GIRTEEVGKLASEVAAIPEVRKALDERQRE-LAKKPGIVLEG   72 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccc-------cCCHHHHHHHHHHhcccHhHHHHHHHHHHH-HhhCCCEEEEe
Confidence            5899999999999999999999875422222       110000000000 00011233233323323 33445688898


Q ss_pred             CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHhc
Q 047717           82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDD-KIFEDLVRRFE  143 (303)
Q Consensus        82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~-e~~~~l~~r~E  143 (303)
                      ...  ++.     +   ......+||+.+|++.+.+|..+|.....+..++ +....+..+.+
T Consensus        73 ~~~--~~~-----~---~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~  125 (147)
T cd02020          73 RDI--GTV-----V---FPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDE  125 (147)
T ss_pred             eee--eeE-----E---cCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            531  110     1   1223468999999999999999864322223444 44444544433

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.91  E-value=8.9e-10  Score=87.36  Aligned_cols=107  Identities=23%  Similarity=0.261  Sum_probs=56.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc---ccCCCchhhHHHHHHHHHHHHH---hcCCCCEE
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN---QSYASMPAEKNLRGVLRSEVDR---SVSKDNII   77 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~---~~y~~~~~e~~~r~~l~~~v~~---~L~~~~~V   77 (303)
                      |+|+|.|||||||+|+.|+++++...  .+....+.........   ..+.....  .....+...+..   ....+..+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   76 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDII--RDIAPEEDIVDSIDDNPDWKENKRLDM--EFQDELLDSIIQAIRRMNKGRNI   76 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHH--HHHHHHTTSHSSHCCHHCCCCCCCSCH--HHHHHHHHHHHHHHHHHTTTSCE
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHH--HHHHHhcCCcccccccchhhhhhhhhh--hhHHHHHHHHHHhhcccccCCcE
Confidence            78999999999999999999972210  0000001000000000   11111111  111122222222   34677888


Q ss_pred             EEcCCCCchHHHHHHHHHHHHcCCcEEE-EEEecCHHHHHHHHHHhhh
Q 047717           78 IVDSLNSIKGYRYELWCLARAAGIRYCV-LYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        78 IvD~~n~~k~~R~~l~~~ak~~~~~~~v-I~l~~~~e~~~~R~~~R~~  124 (303)
                      |+|+......          ......+. ||++||++++.+|..+|..
T Consensus        77 iid~~~~~~~----------~~~~~~~~~i~L~~~~e~~~~R~~~R~~  114 (129)
T PF13238_consen   77 IIDGILSNLE----------LERLFDIKFIFLDCSPEELRKRLKKRGR  114 (129)
T ss_dssp             EEEESSEEEC----------ETTEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred             EEecccchhc----------ccccceeeEEEEECCHHHHHHHHHhCCC
Confidence            9998654321          11123334 9999999999999999875

...

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.91  E-value=8e-09  Score=89.67  Aligned_cols=163  Identities=13%  Similarity=0.143  Sum_probs=78.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccC---------------CccEEEecCCccCC-CccccCCCc-hhhHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEA---------------KETVRIIDEASFHL-DRNQSYASM-PAEKNLRGVLR   64 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~---------------~~~v~~~~~~~~~~-~~~~~y~~~-~~e~~~r~~l~   64 (303)
                      .+|+|+|+|||||||+++.|.+.......               +.+.+.++.+.+.. .....|... .....+.+...
T Consensus        14 ~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~YGt~~   93 (206)
T PRK14738         14 LLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYGVPK   93 (206)
T ss_pred             eEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCceecCCH
Confidence            47899999999999999999764211100               00011111100000 000000000 00011112223


Q ss_pred             HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEe-cCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717           65 SEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCD-LEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE  143 (303)
Q Consensus        65 ~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~-~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E  143 (303)
                      ..+...+..|.+||+|...  .+ +..    .++......+||+. ++.+++.+|+.+|+.+    -..++..++..-|+
T Consensus        94 ~~i~~~~~~g~~vi~~~~~--~g-~~~----l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~----~~~~~~~Rl~~~~~  162 (206)
T PRK14738         94 APVRQALASGRDVIVKVDV--QG-AAS----IKRLVPEAVFIFLAPPSMDELTRRLELRRTE----SPEELERRLATAPL  162 (206)
T ss_pred             HHHHHHHHcCCcEEEEcCH--HH-HHH----HHHhCCCeEEEEEeCCCHHHHHHHHHHcCCC----CHHHHHHHHHHHHH
Confidence            4677778889999998732  22 222    23333344445543 4566889999988641    12345456655554


Q ss_pred             CCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          144 KPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       144 ~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      +....+.+  ..+.++.+ +++   +...+++.+.|.+
T Consensus       163 e~~~~~~~--~~~iId~~-~~~---e~v~~~i~~~l~~  194 (206)
T PRK14738        163 ELEQLPEF--DYVVVNPE-DRL---DEAVAQIMAIISA  194 (206)
T ss_pred             HHhcccCC--CEEEECCC-CCH---HHHHHHHHHHHHH
Confidence            22211112  24556643 222   3345666666654

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.91  E-value=2.5e-08  Score=85.17  Aligned_cols=130  Identities=14%  Similarity=0.201  Sum_probs=71.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCC---------------ccEEEecCCccCCC-ccccCCCc-hhhHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAK---------------ETVRIIDEASFHLD-RNQSYASM-PAEKNLRGVL   63 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~---------------~~v~~~~~~~~~~~-~~~~y~~~-~~e~~~r~~l   63 (303)
                      +.+|+|+|+|||||||+++.|.+.+......               .+.+.++.+.|.-. ....|-.. .-...+.+.-
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~   83 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTP   83 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecCc
Confidence            4689999999999999999998876432110               11111111111000 00000000 0001222344


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717           64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERHEKGEAAYDDKIFEDLVRR  141 (303)
Q Consensus        64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r  141 (303)
                      .+.+...+..|.++|+|.  -..|.++    +.+.......+||+.+| .++..+|+.+|+.     .+++.++....+
T Consensus        84 ~~~i~~~~~~g~~~i~d~--~~~g~~~----l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~-----~s~e~i~~Rl~~  151 (186)
T PRK14737         84 KAFIEDAFKEGRSAIMDI--DVQGAKI----IKEKFPERIVTIFIEPPSEEEWEERLIHRGT-----DSEESIEKRIEN  151 (186)
T ss_pred             HHHHHHHHHcCCeEEEEc--CHHHHHH----HHHhCCCCeEEEEEECCCHHHHHHHHHhcCC-----CCHHHHHHHHHH
Confidence            456778888999999997  2344332    22233333468899885 6889999998854     244445444444

>PLN02674 adenylate kinase

Probab=98.91  E-value=7.1e-09  Score=91.90  Aligned_cols=122  Identities=11%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCC-c-hhhHHHHHHHHHHHHHhcCCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYAS-M-PAEKNLRGVLRSEVDRSVSKDN   75 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~-~-~~e~~~r~~l~~~v~~~L~~~~   75 (303)
                      +.|+|.|+|||||||+|+.|++.++..+++..-++..+.    .++..-...... . .........+...+.. ...+.
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~-~~~~~  110 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSCQK  110 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhC-cCcCC
Confidence            358999999999999999999999765322211111100    000000000000 0 0011111122222211 12346


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717           76 IIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        76 ~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+|+||......+-..|.......+ ...++|++++|.+++.+|+..|..
T Consensus       111 g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~  160 (244)
T PLN02674        111 GFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWI  160 (244)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcccc
Confidence            7999998877776666655444333 456799999999999999998853

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.90  E-value=5.7e-09  Score=89.02  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      +|.|+|.|||||||+|+.|++.+.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999999974

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=98.89  E-value=4.2e-08  Score=86.67  Aligned_cols=143  Identities=17%  Similarity=0.171  Sum_probs=89.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccC---CccEEEecCCccCC--------------CccccCCCchhh--HHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEA---KETVRIIDEASFHL--------------DRNQSYASMPAE--KNLRGV   62 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~---~~~v~~~~~~~~~~--------------~~~~~y~~~~~e--~~~r~~   62 (303)
                      .+|++.|..|||||++|++||+.|+..++   ..+.+.++..+...              +-..+|.+...+  ...+..
T Consensus        72 kvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q~r  151 (393)
T KOG3877|consen   72 KVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQDR  151 (393)
T ss_pred             eEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHHHH
Confidence            48999999999999999999999987642   45556665432211              001234333211  111111


Q ss_pred             --------HHHHHHHhcCCCCEEEEcCCCC--------------c-hHHHHHHHHHH----HHcCCcEEEEEEecCHHHH
Q 047717           63 --------LRSEVDRSVSKDNIIIVDSLNS--------------I-KGYRYELWCLA----RAAGIRYCVLYCDLEEDHC  115 (303)
Q Consensus        63 --------l~~~v~~~L~~~~~VIvD~~n~--------------~-k~~R~~l~~~a----k~~~~~~~vI~l~~~~e~~  115 (303)
                              ...++...|+.|..||++-+.+              + ++++.....+-    -..-.|+.|||+++|.+.|
T Consensus       152 ~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v  231 (393)
T KOG3877|consen  152 IYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKV  231 (393)
T ss_pred             HHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHH
Confidence                    2246778899999999986542              2 23333332221    2234688999999999999


Q ss_pred             HHHHHHhhhcCC-CCCCHHHHHHHHHHhcC
Q 047717          116 RKWNKERHEKGE-AAYDDKIFEDLVRRFEK  144 (303)
Q Consensus       116 ~~R~~~R~~~~~-~~~~~e~~~~l~~r~E~  144 (303)
                      .+++.+|+...+ ..+++..+.++.+.|..
T Consensus       232 ~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~  261 (393)
T KOG3877|consen  232 LENIKRRGNTDEIKTVSEAYLKDIEESYKD  261 (393)
T ss_pred             HHHHHhcCCCcceeehhHHHHHHHHHHHHH
Confidence            999999986422 12455566666655543

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.88  E-value=9.7e-09  Score=88.38  Aligned_cols=114  Identities=13%  Similarity=0.144  Sum_probs=63.5

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec---CC---------ccC----------CCc----cccCCCch
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID---EA---------SFH----------LDR----NQSYASMP   54 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~---~~---------~~~----------~~~----~~~y~~~~   54 (303)
                      |++|.|+|.|||||||+|+.|++.++...++.+.+..+   ..         .|+          +++    ...|.+..
T Consensus         1 ~~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~   80 (195)
T PRK14730          1 QRRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE   80 (195)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH
Confidence            67899999999999999999999877643332221100   00         010          000    01222222


Q ss_pred             hhHHHHHHHHH----HHHHh---cCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           55 AEKNLRGVLRS----EVDRS---VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        55 ~e~~~r~~l~~----~v~~~---L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      .-+.+.+.+..    .+.+.   ......||+|.......-   +.   +   .-..+|+++||.+++.+|+.+|.
T Consensus        81 ~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~---~~---~---~~D~ii~V~a~~e~r~~Rl~~R~  147 (195)
T PRK14730         81 ERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAK---LT---D---LCSEIWVVDCSPEQQLQRLIKRD  147 (195)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcc---hH---h---CCCEEEEEECCHHHHHHHHHHcC
Confidence            11222222221    22222   223568999986543321   11   1   12358999999999999999984

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.88  E-value=7.6e-09  Score=91.16  Aligned_cols=112  Identities=14%  Similarity=0.043  Sum_probs=67.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCccc-------cCCCc---hhhHHHHHHHHHHHHHhc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRNQ-------SYASM---PAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~~-------~y~~~---~~e~~~r~~l~~~v~~~L   71 (303)
                      -|+|.|+|||||||+|+.|++.++..     ++..++.-- .+....       .|.+.   .....+...+...+.+.+
T Consensus         8 rIvl~G~PGsGK~T~a~~La~~~g~~-----~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~   82 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSKKENLK-----HINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVT   82 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCc-----EEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhc
Confidence            39999999999999999999998764     333332100 000000       00000   011222223443443332


Q ss_pred             -CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           72 -SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        72 -~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                       .....+|+||.......+..+..    ...+..+|++++|.+++.+|+..|.
T Consensus        83 ~~~~~g~iLDGfPRt~~Qa~~l~~----~~~~~~vi~l~~~~~~~~~Rl~~Rr  131 (229)
T PTZ00088         83 DDCFKGFILDGFPRNLKQCKELGK----ITNIDLFVNIYLPRNILIKKLLGRR  131 (229)
T ss_pred             cccCceEEEecCCCCHHHHHHHHh----cCCCCEEEEEeCCHHHHHHHHHcCc
Confidence             24578999997666555544432    2456779999999999999999885

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.88  E-value=1.1e-08  Score=104.35  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=44.0

Q ss_pred             EEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHH
Q 047717          104 CVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT  180 (303)
Q Consensus       104 ~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~  180 (303)
                      +.||++++.++..+|-..+...   ..-+++++++..|.+.  ++ |--+|+-..+.+ ..++++...++++++.+.
T Consensus       157 ~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~--d~-R~~~pl~~~~da-~~idts~~~~~~v~~~i~  226 (712)
T PRK09518        157 VRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEA--DS-KVTSFLSAADGV-TTLDNSDLDFDETLDLLI  226 (712)
T ss_pred             eEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhh--cc-cccCCCCCCCCe-EEEECCCCCHHHHHHHHH
Confidence            5899999999966665555431   2246888999998886  44 777776444322 233444445566655554

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.87  E-value=1.5e-08  Score=85.94  Aligned_cols=138  Identities=13%  Similarity=0.080  Sum_probs=72.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC------ccccCCCch--hhHHHHHHHHHHHH------
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD------RNQSYASMP--AEKNLRGVLRSEVD------   68 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~------~~~~y~~~~--~e~~~r~~l~~~v~------   68 (303)
                      +|.|+|.|||||||+|+.|++.+...+.  .+..++.+.+...      ....|+...  ....+.+.+.....      
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~--~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~   78 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGI--GPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVEL   78 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCC--CEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeec
Confidence            5899999999999999999999975432  3333333333221      111222211  11222222221110      


Q ss_pred             ---------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHH-HHHHHHHhhhcCCCCCCH
Q 047717           69 ---------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDH-CRKWNKERHEKGEAAYDD  132 (303)
Q Consensus        69 ---------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~-~~~R~~~R~~~~~~~~~~  132 (303)
                                     .......+||+||.+...   .++..+      -.+.||++++.+. ++.|-..|.........+
T Consensus        79 p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~---~~l~~~------~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~  149 (179)
T cd02028          79 PIYDFRTGKRRGYRKLKLPPSGVVILEGIYALN---ERLRSL------LDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAE  149 (179)
T ss_pred             ccceeECCccCCCceEEeCCCCEEEEecHHhcC---HhHHhh------cCEEEEEeCCccHHHHHHHHHHhHHhhCCCHH
Confidence                           012245789999976542   233222      3569999999997 766666565321112234


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCc
Q 047717          133 KIFEDLVRRFEKPDRRNRWDSP  154 (303)
Q Consensus       133 e~~~~l~~r~E~P~~~~rwd~p  154 (303)
                      +++.. . .+ .|...+.|..|
T Consensus       150 ~~i~~-~-~~-~~~~~~~~~~~  168 (179)
T cd02028         150 LTILM-W-PS-VPSGEEFIIPP  168 (179)
T ss_pred             HHhhh-c-cc-ccCchhhcCCC
Confidence            55544 2 22 24444445433

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=98.87  E-value=1.2e-08  Score=86.74  Aligned_cols=151  Identities=22%  Similarity=0.173  Sum_probs=83.7

Q ss_pred             EEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----cc---ccCCCch-hhH----HHH-HHHHHHHHHhcC
Q 047717            6 ICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----RN---QSYASMP-AEK----NLR-GVLRSEVDRSVS   72 (303)
Q Consensus         6 l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~~---~~y~~~~-~e~----~~r-~~l~~~v~~~L~   72 (303)
                      |.|+.||||||+++.|+++|...+  ..++...+..-...    +.   .....+. ...    .-| ..+...+..++.
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~--~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~   78 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKG--YKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALK   78 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTT--EEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcC--CcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            579999999999999999998864  33333222211100    00   0011110 000    001 122234556778


Q ss_pred             CCCEEEEcCCCC-------chH--HHHHHHHHHHHcC--CcEEEEEEecCHHHHHHHHHHhhhcC-CCCCCHHHHHHHHH
Q 047717           73 KDNIIIVDSLNS-------IKG--YRYELWCLARAAG--IRYCVLYCDLEEDHCRKWNKERHEKG-EAAYDDKIFEDLVR  140 (303)
Q Consensus        73 ~~~~VIvD~~n~-------~k~--~R~~l~~~ak~~~--~~~~vI~l~~~~e~~~~R~~~R~~~~-~~~~~~e~~~~l~~  140 (303)
                      .|.+||+|-..+       ..+  ....++.+.+...  .|..++|++++++++.+|...|+... ...-..+.+.++..
T Consensus        79 ~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~  158 (186)
T PF02223_consen   79 RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVRE  158 (186)
T ss_dssp             TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHH
T ss_pred             CCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHH
Confidence            999999996321       011  0123344444443  78899999999999999999997611 11112356666666


Q ss_pred             HhcCCCCCCCCCCceeeeCCC
Q 047717          141 RFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       141 r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      .|..-..   +....++++++
T Consensus       159 ~y~~l~~---~~~~~~iid~~  176 (186)
T PF02223_consen  159 AYLELAK---DPNNWVIIDAS  176 (186)
T ss_dssp             HHHHHHH---TTTTEEEEETT
T ss_pred             HHHHHHc---CCCCEEEEECC
Confidence            6654221   33346777764

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.87  E-value=2.6e-08  Score=86.43  Aligned_cols=110  Identities=21%  Similarity=0.281  Sum_probs=61.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---------cccCCCc--hhhHHHHHHHHHHHH--
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---------NQSYASM--PAEKNLRGVLRSEVD--   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---------~~~y~~~--~~e~~~r~~l~~~v~--   68 (303)
                      .+|.|+|.+||||||+++.|++.++.    ..+.+++.+.+....         ...|...  .....+...+.....  
T Consensus         7 ~iI~I~G~sGsGKTTl~~~l~~~l~~----~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~   82 (209)
T PRK05480          7 IIIGIAGGSGSGKTTVASTIYEELGD----ESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGK   82 (209)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhCC----CceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCC
Confidence            48999999999999999999999842    233333333222110         0011111  011122222221100  


Q ss_pred             ----------------H--hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           69 ----------------R--SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        69 ----------------~--~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                                      .  .+....+||+||......  ..+.      ..-..+||+++|.+++++|...|.
T Consensus        83 ~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~------~~~d~~I~v~~~~~~~~~R~~~Rd  147 (209)
T PRK05480         83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR------DLMDIKIFVDTPLDIRLIRRLKRD  147 (209)
T ss_pred             ccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh------hhhceeEEEeCChhHHHHHHHhhc
Confidence                            0  012345899999764321  1111      112358999999999999988886

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=98.87  E-value=5.9e-09  Score=94.99  Aligned_cols=164  Identities=18%  Similarity=0.292  Sum_probs=108.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VI   78 (303)
                      |-||++|++|+||||++-+|.++|...  +...+.+|-+.+  ++.++-.|+....++.+| .+.. +.+.. ..|-+.|
T Consensus        51 ctvw~tglsgagkttis~ale~~l~~~--gipcy~ldgdnirhgl~knlgfs~edreenir-riae-vaklfadaglvci  126 (627)
T KOG4238|consen   51 CTVWLTGLSGAGKTTISFALEEYLVSH--GIPCYSLDGDNIRHGLNKNLGFSPEDREENIR-RIAE-VAKLFADAGLVCI  126 (627)
T ss_pred             eeEEeeccCCCCcceeehHHHHHHHhc--CCcccccCcchhhhhhhhccCCCchhHHHHHH-HHHH-HHHHHhcCCceee
Confidence            679999999999999999999999876  344555554432  334455677766777777 4443 33444 4555544


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh----hcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH----EKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP  154 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~----~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p  154 (303)
                      ......+...|...+.+....+.++.-||+++|.++|.+|..+.-    +.+    .-.-|..+-..||+|..      |
T Consensus       127 tsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkarag----ei~gftgids~ye~pe~------~  196 (627)
T KOG4238|consen  127 TSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAG----EIKGFTGIDSDYEKPET------P  196 (627)
T ss_pred             ehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhcc----ccccccccccccCCCCC------h
Confidence            444444555677777777778999999999999999999976432    111    11224455667898774      6


Q ss_pred             eeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717          155 LFELCPYKDAIENSSAAILDAVAYLTKK  182 (303)
Q Consensus       155 l~~i~~~~~~~~~~~~~~~ei~~~l~~~  182 (303)
                      -+++.++.+..   ....+.+++.|-++
T Consensus       197 e~vl~t~~~~v---~~cvqqvve~lq~~  221 (627)
T KOG4238|consen  197 ERVLKTNLSTV---SDCVQQVVELLQEQ  221 (627)
T ss_pred             hHHhhcCCchH---HHHHHHHHHHHHhc
Confidence            66676654443   23456666666553

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.87  E-value=5.2e-09  Score=105.76  Aligned_cols=162  Identities=22%  Similarity=0.219  Sum_probs=93.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE-------------ecCC----------ccCCCccccCCCc-h---
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRI-------------IDEA----------SFHLDRNQSYASM-P---   54 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~-------------~~~~----------~~~~~~~~~y~~~-~---   54 (303)
                      |.|.|.|++||||||+|+.|+++|+..+++...++             ++++          .+.......|-+. .   
T Consensus       443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (661)
T PRK11860        443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVTD  522 (661)
T ss_pred             ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEchh
Confidence            68999999999999999999999987643322111             0110          0000000111111 0   


Q ss_pred             ---------------hhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-----cEEEEEEecCHHH
Q 047717           55 ---------------AEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGI-----RYCVLYCDLEEDH  114 (303)
Q Consensus        55 ---------------~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-----~~~vI~l~~~~e~  114 (303)
                                     ....+|..+.... +.+.+...||+||               +..|+     ..+.||+++++++
T Consensus       523 ~i~~~~v~~~~s~~a~~~~vr~~l~~~q-r~~~~~~~~v~eG---------------Rdigtvv~p~a~~kifl~a~~~~  586 (661)
T PRK11860        523 AIRTEAAGMGASRVSALPAVRAALLALQ-RSFRRLPGLVADG---------------RDMGTVIFPDAALKVFLTASAEA  586 (661)
T ss_pred             hhCcHHHHHHHHHHhCCHHHHHHHHHHH-HHHhhCCCEEEEC---------------CCCccEECCCCCeEEEEECChhH
Confidence                           1134454444333 3344445689998               23332     3368999999998


Q ss_pred             -HHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717          115 -CRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKK  182 (303)
Q Consensus       115 -~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~  182 (303)
                       +++|..+-.+.+.+..-+++++++..|.+.  +.+|.-+||.....+ ..++++...++|+++.|++.
T Consensus       587 Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~--d~~R~~~pl~~~~da-~~idts~~~~~~v~~~i~~~  652 (661)
T PRK11860        587 RAERRYKQLISKGISANIADLLADLEARDAR--DTQRSVAPLKPAQDA-LLLDNSDLTIEQAVAQVLDW  652 (661)
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHhHH--hhcCCCCCCccCCCE-EEEECCCCCHHHHHHHHHHH
Confidence             455554322222222245888999998775  567888887654322 33444555677777777654

>PRK14526 adenylate kinase; Provisional

Probab=98.87  E-value=2.3e-08  Score=87.05  Aligned_cols=114  Identities=15%  Similarity=0.140  Sum_probs=62.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCC-----CccccCCCchhhHHHHHHHHHHHHHhc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHL-----DRNQSYASMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~-----~~~~~y~~~~~e~~~r~~l~~~v~~~L   71 (303)
                      |. |+|.|+|||||||+|+.|++.++..++...-++.....    .+.     ...+.+..   .......+...+... 
T Consensus         1 m~-i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvp---d~~~~~lv~~~l~~~-   75 (211)
T PRK14526          1 MK-LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVP---DSITIKIVEDKINTI-   75 (211)
T ss_pred             CE-EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCC---hHHHHHHHHHHHhcc-
Confidence            54 77899999999999999999887543221111111000    000     00000110   111111233233222 


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      .....+|+||......+-..|.   +.. ....+|++++|.+++.+|+..|.
T Consensus        76 ~~~~g~ilDGfPR~~~Qa~~l~---~~~-~~~~vi~l~~~~~~~~~Rl~~R~  123 (211)
T PRK14526         76 KNNDNFILDGFPRNINQAKALD---KFL-PNIKIINFLIDEELLIKRLSGRR  123 (211)
T ss_pred             cccCcEEEECCCCCHHHHHHHH---Hhc-CCCEEEEEECCHHHHHHHHHCCC
Confidence            2346688899765554433332   212 22457889999999999999885

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.87  E-value=5.7e-09  Score=96.11  Aligned_cols=145  Identities=10%  Similarity=0.096  Sum_probs=76.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcC-CCCEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVS-KDNII   77 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~-~~~~V   77 (303)
                      ..|+|+|+|||||||+++.|++.++..+     +-.|..   ..+......+. ...+..++..-...+.+.+. .+..|
T Consensus       134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~-----id~D~~i~~~~G~~i~ei~~-~~G~~~fr~~e~~~l~~ll~~~~~~V  207 (309)
T PRK08154        134 RRIALIGLRGAGKSTLGRMLAARLGVPF-----VELNREIEREAGLSVSEIFA-LYGQEGYRRLERRALERLIAEHEEMV  207 (309)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCCE-----EeHHHHHHHHhCCCHHHHHH-HHCHHHHHHHHHHHHHHHHhhCCCEE
Confidence            3799999999999999999999997642     322211   11111111111 01233444333333444443 34566


Q ss_pred             EEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcC---CCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717           78 IVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKG---EAAYDDKIFEDLVRRFEKPDRRNRWDSP  154 (303)
Q Consensus        78 IvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~---~~~~~~e~~~~l~~r~E~P~~~~rwd~p  154 (303)
                      |..|......  ...+.....   ..++|||.+|++++.+|+.+|....   ...-..+.+..+..+.++..     ...
T Consensus       208 I~~Ggg~v~~--~~~~~~l~~---~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y-----~~a  277 (309)
T PRK08154        208 LATGGGIVSE--PATFDLLLS---HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLY-----ARA  277 (309)
T ss_pred             EECCCchhCC--HHHHHHHHh---CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHH-----HhC
Confidence            6665442211  011111122   3469999999999999998875311   01112355666655544311     113


Q ss_pred             eeeeCCCC
Q 047717          155 LFELCPYK  162 (303)
Q Consensus       155 l~~i~~~~  162 (303)
                      .++++++.
T Consensus       278 d~~I~t~~  285 (309)
T PRK08154        278 DAVVDTSG  285 (309)
T ss_pred             CEEEECCC
Confidence            46777653

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.85  E-value=1.1e-08  Score=100.96  Aligned_cols=166  Identities=14%  Similarity=0.094  Sum_probs=88.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      +.|+|+|+|||||||+++.|++.++..+++.+..+..  ..+..-.+.|. ...|..+|+.-...+...+.....||.-|
T Consensus         7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~--~~g~si~eif~-~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G   83 (542)
T PRK14021          7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIER--EIGMSIPSYFE-EYGEPAFREVEADVVADMLEDFDGIFSLG   83 (542)
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHH--HHCcCHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence            4799999999999999999999998754333322111  11221122332 22455666433344444444445555433


Q ss_pred             CC--CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC-CCCCHHHHHHHHHHhcCCCCCCCCCCceeee
Q 047717           82 LN--SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE-AAYDDKIFEDLVRRFEKPDRRNRWDSPLFEL  158 (303)
Q Consensus        82 ~n--~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~-~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i  158 (303)
                      .-  .....|..|....+..+   ++||+++|.+++.+|+..+..++- ...+.+.+.+++.+-++ ...   ..-.+++
T Consensus        84 GG~v~~~~n~~~L~~~~~~~g---~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~-~Y~---~~Ad~~i  156 (542)
T PRK14021         84 GGAPMTPSTQHALASYIAHGG---RVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDP-VFR---QVANVHV  156 (542)
T ss_pred             CchhCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHH-HHH---hhCCEEE
Confidence            22  23333444433445554   499999999999999864432110 01134556666554321 110   1134667


Q ss_pred             CCCCcccccchHHHHHHHHHHH
Q 047717          159 CPYKDAIENSSAAILDAVAYLT  180 (303)
Q Consensus       159 ~~~~~~~~~~~~~~~ei~~~l~  180 (303)
                      +++...+   ++..++|++.+.
T Consensus       157 ~~~~~~~---~~~~~~i~~~~~  175 (542)
T PRK14021        157 HTRGLTP---QAAAKKLIDMVA  175 (542)
T ss_pred             ECCCCCH---HHHHHHHHHHHH
Confidence            6543332   234445555443

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.85  E-value=3e-09  Score=88.87  Aligned_cols=111  Identities=20%  Similarity=0.260  Sum_probs=60.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC-CccCCCccc--cCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE-ASFHLDRNQ--SYASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~-~~~~~~~~~--~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      ++|+|+|.|||||||+|+.|++.++...++.+.++..- ...+.....  .+...  ...+...+...+......+..+|
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~V   78 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEE--NPEIDKKIDRRIHEIALKEKNVV   78 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhc--CcHHHHHHHHHHHHHHhcCCCEE
Confidence            37999999999999999999999875422211000000 001110000  01000  01122233333333333445677


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +|+...  ++      ..+  +....+||++||.+++.+|..+|..
T Consensus        79 i~g~~~--~~------~~~--~~~d~~v~v~a~~~~r~~R~~~R~~  114 (171)
T TIGR02173        79 LESRLA--GW------IVR--EYADVKIWLKAPLEVRARRIAKREG  114 (171)
T ss_pred             EEeccc--ce------eec--CCcCEEEEEECCHHHHHHHHHHccC
Confidence            888532  11      011  2233689999999999999998854

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.84  E-value=9.3e-09  Score=88.40  Aligned_cols=53  Identities=11%  Similarity=0.079  Sum_probs=35.4

Q ss_pred             CEEEEcCCCCchH-HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q 047717           75 NIIIVDSLNSIKG-YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRF  142 (303)
Q Consensus        75 ~~VIvD~~n~~k~-~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~  142 (303)
                      ..||+|+...... ++          ..-..+|+++||.+++.+|+.+|.     .++.+.+.....++
T Consensus       107 ~~vv~e~pll~e~~~~----------~~~D~vi~V~a~~e~~~~Rl~~R~-----~~s~e~~~~ri~~Q  160 (194)
T PRK00081        107 PYVVLDIPLLFENGLE----------KLVDRVLVVDAPPETQLERLMARD-----GLSEEEAEAIIASQ  160 (194)
T ss_pred             CEEEEEehHhhcCCch----------hhCCeEEEEECCHHHHHHHHHHcC-----CCCHHHHHHHHHHh
Confidence            6899999764322 11          112369999999999999999884     34655555544443

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.82  E-value=4.8e-08  Score=84.50  Aligned_cols=126  Identities=21%  Similarity=0.236  Sum_probs=69.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC--------cc-ccCCCc--hhhHHHHHHHHHHHH---
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD--------RN-QSYASM--PAEKNLRGVLRSEVD---   68 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~--------~~-~~y~~~--~~e~~~r~~l~~~v~---   68 (303)
                      +|.|.|.+||||||+|+.|.+.|+..    .+.++..+.+...        +. ..|+..  .+...+...+.....   
T Consensus        10 iIgIaG~SgSGKTTva~~l~~~~~~~----~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~   85 (218)
T COG0572          10 IIGIAGGSGSGKTTVAKELSEQLGVE----KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP   85 (218)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhCcC----cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence            89999999999999999999999843    2333332222111        00 111111  112222222322110   


Q ss_pred             -----------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC
Q 047717           69 -----------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD  131 (303)
Q Consensus        69 -----------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~  131 (303)
                                       ..+....+||++|....-.  ..+.   +.+   ...||+++|.++|..|-..|.-.......
T Consensus        86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr---~~~---d~kIfvdtd~D~RliRri~RD~~~rg~~~  157 (218)
T COG0572          86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR---DLM---DLKIFVDTDADVRLIRRIKRDVQERGRDL  157 (218)
T ss_pred             ccccccchhcccccCCccccCCCcEEEEeccccccc--HHHH---hhc---CEEEEEeCCccHHHHHHHHHHHHHhCCCH
Confidence                             0123568999999764322  1222   222   34999999999988887777543222334


Q ss_pred             HHHHHHHHH
Q 047717          132 DKIFEDLVR  140 (303)
Q Consensus       132 ~e~~~~l~~  140 (303)
                      +.++++...
T Consensus       158 e~vi~qy~~  166 (218)
T COG0572         158 ESVIEQYVK  166 (218)
T ss_pred             HHHHHHHHH
Confidence            555555543

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.81  E-value=6.7e-08  Score=92.26  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=73.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcccc-CCccEEE------ecCCccCCCccccCC--------------CchhhHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESE-AKETVRI------IDEASFHLDRNQSYA--------------SMPAEKNLR   60 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~~------~~~~~~~~~~~~~y~--------------~~~~e~~~r   60 (303)
                      .+|+++|+|||||||+|..|+..++... +..|.+.      ++++.......+.|.              ....+..+.
T Consensus       256 ~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~vi~  335 (475)
T PRK12337        256 LHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAEVLR  335 (475)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHHHHH
Confidence            4899999999999999999999997641 1222110      111100000000010              001111111


Q ss_pred             ----------HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCH-HHHHHHHHHhhh
Q 047717           61 ----------GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE-DHCRKWNKERHE  124 (303)
Q Consensus        61 ----------~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~-e~~~~R~~~R~~  124 (303)
                                ..+...+.+.+..|..||+||.+..+++..    .+...+..++.+.|.++. +...+|...|..
T Consensus       336 Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~----~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~  406 (475)
T PRK12337        336 GFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR----HPYQAGALVVPMLVTLPDEALHRRRFELRDR  406 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH----HHHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence                      124456778899999999999999999865    233445566666777765 458899999976

>PRK05439 pantothenate kinase; Provisional

Probab=98.81  E-value=3e-08  Score=90.80  Aligned_cols=119  Identities=23%  Similarity=0.316  Sum_probs=66.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc----------ccCCCchhhHHHHHHHHHHHH----
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN----------QSYASMPAEKNLRGVLRSEVD----   68 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~----------~~y~~~~~e~~~r~~l~~~v~----   68 (303)
                      +|.|+|.|||||||+|+.|++.++....+..+.++..+++.....          ..+.++.+...+...+.....    
T Consensus        88 iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~  167 (311)
T PRK05439         88 IIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPN  167 (311)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCe
Confidence            789999999999999999999886432233455555444433110          111111112222222221100    


Q ss_pred             ------------------HhcCCCCEEEEcCCCCchHHHH-HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           69 ------------------RSVSKDNIIIVDSLNSIKGYRY-ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        69 ------------------~~L~~~~~VIvD~~n~~k~~R~-~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                                        ..+....+||++|.+....-.- .+..+..-   -...|||+++.+.+.+|..+|-.
T Consensus       168 v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~---~D~~IfVda~~~~~~~w~i~R~~  239 (311)
T PRK05439        168 VTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDF---FDFSIYVDADEDLIEKWYIERFL  239 (311)
T ss_pred             EEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHh---CCEEEEEECCHHHHHHHHHHHHH
Confidence                              0123457899999775421110 11111122   23589999999999998888753

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.80  E-value=1.7e-08  Score=83.08  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=61.8

Q ss_pred             EEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCC-c-cc---cC--CC-chhhHHHHHHHHHHHHHhcCCC
Q 047717            6 ICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLD-R-NQ---SY--AS-MPAEKNLRGVLRSEVDRSVSKD   74 (303)
Q Consensus         6 l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~-~-~~---~y--~~-~~~e~~~r~~l~~~v~~~L~~~   74 (303)
                      |.|+|||||||+|+.|+++++..+     +.+++.   ...-. . ..   .+  .. ......+-..+...+.+. ...
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~-----is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~-~~~   74 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVH-----ISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP-PCN   74 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEE-----EEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG-GTT
T ss_pred             CcCCCCCChHHHHHHHHHhcCcce-----echHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh-ccc
Confidence            689999999999999999987532     222210   00000 0 00   00  00 001122222333333333 456


Q ss_pred             CEEEEcCCCCchHHHHHHHHHHH-HcCCcEEEEEEecCHHHHHHHHHH
Q 047717           75 NIIIVDSLNSIKGYRYELWCLAR-AAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        75 ~~VIvD~~n~~k~~R~~l~~~ak-~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      ..+|+||.......-..|..... ....+.++|+++||.+.+.+|...
T Consensus        75 ~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   75 RGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             TEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             ceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            88999998776665555544322 344567899999999999999875

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.79  E-value=2.3e-08  Score=86.43  Aligned_cols=71  Identities=10%  Similarity=-0.004  Sum_probs=42.4

Q ss_pred             CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717           75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP  154 (303)
Q Consensus        75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p  154 (303)
                      ..|++|.......-         ....-..+||++||.++..+|..+|.     .++.+.+.....++-.+.  .+....
T Consensus       108 ~~vv~e~plL~e~g---------~~~~~D~vi~V~a~~e~ri~Rl~~R~-----g~s~e~~~~ri~~Q~~~~--~k~~~a  171 (200)
T PRK14734        108 KVAVYDMPLLVEKG---------LDRKMDLVVVVDVDVEERVRRLVEKR-----GLDEDDARRRIAAQIPDD--VRLKAA  171 (200)
T ss_pred             CEEEEEeeceeEcC---------ccccCCeEEEEECCHHHHHHHHHHcC-----CCCHHHHHHHHHhcCCHH--HHHHhC
Confidence            67888876543221         01123459999999999999999883     255555555555444322  223334


Q ss_pred             eeeeCCC
Q 047717          155 LFELCPY  161 (303)
Q Consensus       155 l~~i~~~  161 (303)
                      .++|+.+
T Consensus       172 d~vI~N~  178 (200)
T PRK14734        172 DIVVDNN  178 (200)
T ss_pred             CEEEECc
Confidence            5667643

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.79  E-value=1.4e-07  Score=85.73  Aligned_cols=97  Identities=24%  Similarity=0.298  Sum_probs=60.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHh-cCCCCEEEE
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRS-VSKDNIIIV   79 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~-L~~~~~VIv   79 (303)
                      |.+|+|+|++||||||+++.|.+ .+.       ..++...              ...+. .+...+... ....-.|++
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~-------~~~d~~~--------------~~L~~-~l~~~~~~~~~~~~~av~i   62 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALED-LGY-------YCVDNLP--------------PSLLP-KLVELLAQSGGIRKVAVVI   62 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHH-cCC-------eEECCcC--------------HHHHH-HHHHHHHhcCCCCCeEEEE
Confidence            56899999999999999999853 222       2222110              01111 121122221 123357888


Q ss_pred             cCCCC--chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           80 DSLNS--IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        80 D~~n~--~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      |..+.  .+.++..+..+ +..+..+.+||++++.+++.+|..+
T Consensus        63 D~r~~~~~~~~~~~~~~L-~~~g~~~~iI~L~a~~e~L~~Rl~~  105 (288)
T PRK05416         63 DVRSRPFFDDLPEALDEL-RERGIDVRVLFLDASDEVLIRRYSE  105 (288)
T ss_pred             ccCchhhHHHHHHHHHHH-HHcCCcEEEEEEECCHHHHHHHHhh
Confidence            98753  34455555544 4458888899999999999999875

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.79  E-value=3.4e-08  Score=87.63  Aligned_cols=28  Identities=32%  Similarity=0.341  Sum_probs=25.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |.+|.|+|.+||||||+++.|.+.++..
T Consensus         1 M~iIGlTGgIgSGKStVs~~L~~~~G~~   28 (244)
T PTZ00451          1 MILIGLTGGIACGKSTVSRILREEHHIE   28 (244)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            8899999999999999999999876543

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.79  E-value=1e-07  Score=80.45  Aligned_cols=130  Identities=15%  Similarity=0.142  Sum_probs=67.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccC--CCc-hhh---------------HHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSY--ASM-PAE---------------KNLRGVL   63 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y--~~~-~~e---------------~~~r~~l   63 (303)
                      .+|+|.|++||||||+++.|+..+...+........ ....+......|  .+. .-.               ....+..
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~   80 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTR-KPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP   80 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceee-CCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence            479999999999999999999876543211100000 000000000000  000 000               0011122


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717           64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE  143 (303)
Q Consensus        64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E  143 (303)
                      ...+...+..|.+||+|...  .+.    ..+.+..+.+..++++.++.+.+.+|+.+|+.     .+++.+..-..++.
T Consensus        81 ~~~i~~~~~~g~~vi~d~~~--~~~----~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~-----~~~~~i~~rl~~~~  149 (180)
T TIGR03263        81 KSPVEEALAAGKDVLLEIDV--QGA----RQVKKKFPDAVSIFILPPSLEELERRLRKRGT-----DSEEVIERRLAKAK  149 (180)
T ss_pred             HHHHHHHHHCCCeEEEECCH--HHH----HHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHH
Confidence            34566778889999999742  222    22223333334444456678899999998854     24544544444443

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK15453 phosphoribulokinase; Provisional

Probab=98.78  E-value=8.3e-08  Score=86.26  Aligned_cols=145  Identities=12%  Similarity=0.224  Sum_probs=78.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-Ccc-------------ccCCC---c-hhhHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-DRN-------------QSYAS---M-PAEKNLRGVL   63 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-~~~-------------~~y~~---~-~~e~~~r~~l   63 (303)
                      |+|+|+|.|||||||+|+.|++.|+...  ..+.+++.+.++. .+.             ..|+.   . ..-..+.+.+
T Consensus         6 piI~ItG~SGsGKTTva~~l~~if~~~~--~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l   83 (290)
T PRK15453          6 PIIAVTGSSGAGTTTVKRAFEKIFRREN--INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF   83 (290)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhhcC--CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence            7999999999999999999999887542  2344444444432 111             12322   1 1111111122


Q ss_pred             HHHHH------------------H-----------hc-CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHH
Q 047717           64 RSEVD------------------R-----------SV-SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEED  113 (303)
Q Consensus        64 ~~~v~------------------~-----------~L-~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e  113 (303)
                      ....+                  .           .+ ....+||++|....-. + ....++...+   ..||++++.+
T Consensus        84 ~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~-~-~~~~lr~~~D---lkIfVdp~~d  158 (290)
T PRK15453         84 REYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVV-T-DQVDVAQHVD---LLIGVVPIVN  158 (290)
T ss_pred             HHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccc-c-ccHHHHHhCC---eeEeeCCcHh
Confidence            21100                  0           12 2356899999753210 0 1122333333   4999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCcee
Q 047717          114 HCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLF  156 (303)
Q Consensus       114 ~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~  156 (303)
                      .++.|-..|.........+.+++.+..| . |+. ..+-.|.|
T Consensus       159 lr~irRI~RD~~ERGrs~EsVi~qilrr-m-Pdy-~~yI~PQ~  198 (290)
T PRK15453        159 LEWIQKIHRDTSERGYSREAVMDTILRR-M-PDY-INYITPQF  198 (290)
T ss_pred             HHHHHHHHhhhHhhCCCHHHHHHHHHHh-C-ChH-hhhCCCCc
Confidence            9887777776422112345667766666 3 553 33444544

>PLN02422 dephospho-CoA kinase

Probab=98.77  E-value=4.1e-08  Score=86.41  Aligned_cols=27  Identities=22%  Similarity=0.262  Sum_probs=23.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |.+|.|+|.+||||||+++.|++ ++..
T Consensus         1 M~~igltG~igsGKstv~~~l~~-~g~~   27 (232)
T PLN02422          1 MRVVGLTGGIASGKSTVSNLFKS-SGIP   27 (232)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-CCCe
Confidence            88999999999999999999984 5543

>PLN02459 probable adenylate kinase

Probab=98.77  E-value=1.5e-08  Score=90.32  Aligned_cols=116  Identities=15%  Similarity=0.066  Sum_probs=65.5

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCCCccccCCC--c-hhhHHHHHHHHHHHHHhc-CCCC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHLDRNQSYAS--M-PAEKNLRGVLRSEVDRSV-SKDN   75 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~~~~~~y~~--~-~~e~~~r~~l~~~v~~~L-~~~~   75 (303)
                      |+|.|+|||||||+|+.|++.++..++...-++..+..    ++.. -..|-.  . .........+...+.+.. ....
T Consensus        32 ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~-i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~  110 (261)
T PLN02459         32 WVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQ-LKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGES  110 (261)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHH-HHHHHHcCCccCHHHHHHHHHHHHhcccccCCc
Confidence            67789999999999999999987643221111111000    0000 000000  0 011222223333333321 2347


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+|+||......+-..|..    .....++|++++|.+++.+|+..|..
T Consensus       111 g~iLDGFPRt~~Qa~~Le~----~~~id~Vi~L~v~d~~l~~Rl~gR~~  155 (261)
T PLN02459        111 GFILDGFPRTVRQAEILEG----VTDIDLVVNLKLREEVLVEKCLGRRI  155 (261)
T ss_pred             eEEEeCCCCCHHHHHHHHh----cCCCCEEEEEECCHHHHHHHhhcccc
Confidence            8999997766554433322    22356799999999999999998853

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.75  E-value=3.2e-08  Score=87.03  Aligned_cols=31  Identities=32%  Similarity=0.304  Sum_probs=26.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKE   32 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~   32 (303)
                      ++|.|.|+|||||||+|+.|++.++..+++.
T Consensus         5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~   35 (225)
T PRK00023          5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDT   35 (225)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence            3899999999999999999999998665443

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.75  E-value=3.2e-08  Score=83.16  Aligned_cols=132  Identities=18%  Similarity=0.189  Sum_probs=73.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcccc--------------CCccEEEecCCccC--CCccccCCCchhhHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESE--------------AKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRS   65 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~--------------~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~   65 (303)
                      .||+|+|++|+||||+.+.|.+..+...              -+.+.++++.+.|.  +..+.......--..+.+....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~~~   84 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSRE   84 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCcHH
Confidence            4899999999999999999998873211              01111222211110  0000000000000122234445


Q ss_pred             HHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717           66 EVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus        66 ~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      .+...+..|..||+|--  ..|.+     ..|..-.+...||+.+| .+.+.+|+..|+.+    ..+.+-.+|.....+
T Consensus        85 ~ve~~~~~G~~vildId--~qGa~-----qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtd----s~e~I~~Rl~~a~~E  153 (191)
T COG0194          85 PVEQALAEGKDVILDID--VQGAL-----QVKKKMPNAVSIFILPPSLEELERRLKGRGTD----SEEVIARRLENAKKE  153 (191)
T ss_pred             HHHHHHhcCCeEEEEEe--hHHHH-----HHHHhCCCeEEEEEcCCCHHHHHHHHHccCCC----CHHHHHHHHHHHHHH
Confidence            67788889999999973  33432     12333337888998876 56789999998752    233334445544443

>PRK12338 hypothetical protein; Provisional

Probab=98.75  E-value=5.4e-08  Score=89.18  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=69.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccC-CccEEE------ecCCccCCCccccCCCc-----------hhh-------
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEA-KETVRI------IDEASFHLDRNQSYASM-----------PAE-------   56 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~-~~~v~~------~~~~~~~~~~~~~y~~~-----------~~e-------   56 (303)
                      .+|+|+|.|||||||+|+.|+++++...+ ..+.+.      ++.+-........|...           ..+       
T Consensus         5 ~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~gf~   84 (319)
T PRK12338          5 YVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAGFE   84 (319)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHHHH
Confidence            48999999999999999999999975421 111000      01100000000111100           011       


Q ss_pred             ---HHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           57 ---KNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        57 ---~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                         ..+...+...+.+++..|..||+||....+++.....   .........+++..+.+..++|...|..
T Consensus        85 ~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~---~~~~~~v~~~vl~~dee~h~~Rf~~R~~  152 (319)
T PRK12338         85 EHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ---FEENASIHFFILSADEEVHKERFVKRAM  152 (319)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh---hcccCceEEEEEECCHHHHHHHHHHhhh
Confidence               1111233345666778899999999988888754211   0112234555566888899999999774

>PLN02842 nucleotide kinase

Probab=98.73  E-value=8.1e-08  Score=92.89  Aligned_cols=116  Identities=14%  Similarity=0.125  Sum_probs=60.2

Q ss_pred             EEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc----cccCCC--chhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            5 VICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR----NQSYAS--MPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         5 ~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~----~~~y~~--~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      +|.|+|||||||+|+.|+++++..++...-++..+..-+...    ......  ......+...+...+.+.......+|
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I   80 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL   80 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence            489999999999999999999754322111111100000000    000000  00111222233323322111224477


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      +||......   +...+.+....+.++|++++|.+++.+|...|.
T Consensus        81 LDGfPRt~~---Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~  122 (505)
T PLN02842         81 LDGYPRSFA---QAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR  122 (505)
T ss_pred             EeCCCCcHH---HHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence            799544433   333232333357789999999999999988874

>smart00072 GuKc Guanylate kinase homologues

Probab=98.71  E-value=4.6e-08  Score=83.31  Aligned_cols=116  Identities=14%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccC----------------CccEEEecCCccCC-CccccCCC-chhhHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEA----------------KETVRIIDEASFHL-DRNQSYAS-MPAEKNLRGVL   63 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~----------------~~~v~~~~~~~~~~-~~~~~y~~-~~~e~~~r~~l   63 (303)
                      .+|+|+|++||||+|+++.|.+.+...+.                +.+...++.+.+.- ...+.|-. ......+.+..
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~   82 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS   82 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence            58999999999999999999988632110                01111111100000 00000000 00001122233


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEe-cCHHHHHHHHHHhhh
Q 047717           64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCD-LEEDHCRKWNKERHE  124 (303)
Q Consensus        64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~-~~~e~~~~R~~~R~~  124 (303)
                      .+.+...+..+..+|+|..  ..+.+. +    +.......+||+. ++.+++.+|+.+|+.
T Consensus        83 ~~~i~~~~~~~~~~ild~~--~~~~~~-l----~~~~~~~~vIfi~~~s~~~l~~rl~~R~~  137 (184)
T smart00072       83 KETIRQVAEQGKHCLLDID--PQGVKQ-L----RKAQLYPIVIFIAPPSSEELERRLRGRGT  137 (184)
T ss_pred             HHHHHHHHHcCCeEEEEEC--HHHHHH-H----HHhCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence            3456677778999999984  344321 2    3334455799997 556779999998864

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.71  E-value=4.6e-08  Score=79.04  Aligned_cols=101  Identities=20%  Similarity=0.120  Sum_probs=60.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCCc-hhhHHHHHHHHHHHHHhcCCCCE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYASM-PAEKNLRGVLRSEVDRSVSKDNI   76 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~~-~~e~~~r~~l~~~v~~~L~~~~~   76 (303)
                      |-|+|+|.||+||||+|.+|++.++..     .+.+++.    .+.-.=.+.|... -+|..+...+..    .|.+ ..
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~-----~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~----~m~~-Gg   77 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGLE-----YIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEP----LMIE-GG   77 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCCc-----eEehhhHHhhhcchhcccccccCccccHHHHHHHHHH----HHhc-CC
Confidence            679999999999999999999998764     3444432    1110000112111 234444434443    3333 44


Q ss_pred             EEEcC--CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           77 IIVDS--LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        77 VIvD~--~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .|||-  .-..++   .|         -..|+.+.||-+++..|+.+|+-
T Consensus        78 ~IVDyHgCd~Fpe---rw---------fdlVvVLr~~~s~LY~RL~sRgY  115 (176)
T KOG3347|consen   78 NIVDYHGCDFFPE---RW---------FDLVVVLRTPNSVLYDRLKSRGY  115 (176)
T ss_pred             cEEeecccCccch---hh---------eeEEEEEecCchHHHHHHHHcCC
Confidence            66663  222222   11         23488899999999999999974

>TIGR00235 udk uridine kinase

Probab=98.70  E-value=1.7e-07  Score=81.23  Aligned_cols=25  Identities=36%  Similarity=0.424  Sum_probs=23.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|.|+|++||||||+++.|+..+..
T Consensus         8 vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         8 IIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            7899999999999999999998864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.70  E-value=4.1e-07  Score=75.10  Aligned_cols=126  Identities=16%  Similarity=0.186  Sum_probs=80.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc-cccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc--CCCCEEEE
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK-ESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV--SKDNIIIV   79 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~-~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L--~~~~~VIv   79 (303)
                      +|+=.+.+||||||+|..|.+.|+ +.      ++-+|+ +.       .. ...     .+...+.+.|  ....+||+
T Consensus         1 vlvPIAtiGCGKTTva~aL~~LFg~wg------HvQnDn-I~-------~k-~~~-----~f~~~~l~~L~~~~~~vVia   60 (168)
T PF08303_consen    1 VLVPIATIGCGKTTVALALSNLFGEWG------HVQNDN-IT-------GK-RKP-----KFIKAVLELLAKDTHPVVIA   60 (168)
T ss_pred             CEeeecCCCcCHHHHHHHHHHHcCCCC------ccccCC-CC-------CC-CHH-----HHHHHHHHHHhhCCCCEEEE
Confidence            355678999999999999999998 42      121221 11       00 111     2222344556  67789999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCC-------cE---EEEEEec-CH----HHHHHHHHHhhhc-C---CCCCC----HHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGI-------RY---CVLYCDL-EE----DHCRKWNKERHEK-G---EAAYD----DKIFE  136 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~-------~~---~vI~l~~-~~----e~~~~R~~~R~~~-~---~~~~~----~e~~~  136 (303)
                      |-.|..+..|.+++...+....       ..   ++-|+.- +.    ++|.+|..+|+.. .   .....    ..++.
T Consensus        61 DRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~  140 (168)
T PF08303_consen   61 DRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIME  140 (168)
T ss_pred             eCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHH
Confidence            9999999999999987766543       22   2333322 22    4688999999842 0   01111    36788


Q ss_pred             HHHHHhcCCCCC
Q 047717          137 DLVRRFEKPDRR  148 (303)
Q Consensus       137 ~l~~r~E~P~~~  148 (303)
                      ..+.|||+.++.
T Consensus       141 gFi~rfep~~~~  152 (168)
T PF08303_consen  141 GFIKRFEPVDPD  152 (168)
T ss_pred             HHHHhcCCCCCC
Confidence            899999987753

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.69  E-value=7.6e-08  Score=93.78  Aligned_cols=111  Identities=15%  Similarity=0.086  Sum_probs=60.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      -|+|+|+|||||||+++.|++.++...++.+..+..  ..+....+.|. ...+..+|..-...+++.+.....||-.|.
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~--~~g~~i~~i~~-~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gg   78 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER--REGRSVRRIFE-EDGEEYFRLKEKELLRELVERDNVVVATGG   78 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH--HcCCCHHHHHH-HhhhHHHHHHHHHHHHHHhhcCCEEEECCC
Confidence            489999999999999999999987643222211111  11111111222 122344443222233333333344444442


Q ss_pred             CC--chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           83 NS--IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        83 n~--~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ..  ....|..+    +.    ..+|||++|.+++.+|+..|++
T Consensus        79 gvv~~~~~r~~l----~~----~~vI~L~as~e~l~~Rl~~~~R  114 (488)
T PRK13951         79 GVVIDPENRELL----KK----EKTLFLYAPPEVLMERVTTENR  114 (488)
T ss_pred             ccccChHHHHHH----hc----CeEEEEECCHHHHHHHhccCCC
Confidence            21  12233322    22    2489999999999999976543

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.69  E-value=4.1e-08  Score=84.31  Aligned_cols=27  Identities=37%  Similarity=0.480  Sum_probs=25.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      +|.|+|+|||||||+|+.|+..|+..+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~   27 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRG   27 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccC
Confidence            689999999999999999999998754

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.68  E-value=7.3e-07  Score=76.91  Aligned_cols=128  Identities=14%  Similarity=0.176  Sum_probs=67.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCc---------------cEEEecCCccCC-CccccCCC--chhhHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKE---------------TVRIIDEASFHL-DRNQSYAS--MPAEKNLRGVLR   64 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~---------------~v~~~~~~~~~~-~~~~~y~~--~~~e~~~r~~l~   64 (303)
                      +|+|+|++||||||+++.|+..+...+...               +...++...+.- ...+.|..  .... ...+...
T Consensus         7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~   85 (205)
T PRK00300          7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFG-NYYGTPR   85 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECC-ccccCcH
Confidence            899999999999999999999875211100               001111000000 00000000  0000 0111223


Q ss_pred             HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEE-ecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717           65 SEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC-DLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE  143 (303)
Q Consensus        65 ~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l-~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E  143 (303)
                      ..+...+..|..||+|...  .+.    ..+.+..+ ...+|++ .++.+++.+|..+|+.     .+++.++....++.
T Consensus        86 ~~i~~~l~~g~~vi~dl~~--~g~----~~l~~~~~-~~~~I~i~~~s~~~l~~Rl~~R~~-----~~~~~i~~rl~~~~  153 (205)
T PRK00300         86 SPVEEALAAGKDVLLEIDW--QGA----RQVKKKMP-DAVSIFILPPSLEELERRLRGRGT-----DSEEVIARRLAKAR  153 (205)
T ss_pred             HHHHHHHHcCCeEEEeCCH--HHH----HHHHHhCC-CcEEEEEECcCHHHHHHHHHhcCC-----CCHHHHHHHHHHHH
Confidence            4566777889999999742  222    22333343 3344554 5678889999998864     35555555444443

>PLN02199 shikimate kinase

Probab=98.67  E-value=1.2e-07  Score=85.69  Aligned_cols=111  Identities=13%  Similarity=0.130  Sum_probs=64.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      -|+|+|++||||||+++.|++.++...++.+.++.... .+..-..+|. ...+..+|..-...+.+.......||--|.
T Consensus       104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~-~G~sI~eIf~-~~GE~~FR~~E~e~L~~L~~~~~~VIStGG  181 (303)
T PLN02199        104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAM-NGTSVAEIFV-HHGENFFRGKETDALKKLSSRYQVVVSTGG  181 (303)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHh-cCCCHHHHHH-HhCHHHHHHHHHHHHHHHHhcCCEEEECCC
Confidence            58999999999999999999999765333222111100 0111111222 123456664444455555444556665543


Q ss_pred             CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      ..  -.+.+.+.+.+ .|   .+||+++|.++..+|+..
T Consensus       182 G~--V~~~~n~~~L~-~G---~vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        182 GA--VIRPINWKYMH-KG---ISIWLDVPLEALAHRIAA  214 (303)
T ss_pred             cc--cCCHHHHHHHh-CC---eEEEEECCHHHHHHHHhh
Confidence            21  12333333333 34   499999999999999985

>PHA03132 thymidine kinase; Provisional

Probab=98.66  E-value=6.1e-07  Score=88.12  Aligned_cols=139  Identities=15%  Similarity=0.134  Sum_probs=80.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC------ccccCCC---------chhhHHHHH-HH-
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD------RNQSYAS---------MPAEKNLRG-VL-   63 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~------~~~~y~~---------~~~e~~~r~-~l-   63 (303)
                      +.+|+|.|..||||||+++.|+++++     ..++.+.+..-.+.      ....|..         +.....+.. .+ 
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg-----~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~F  331 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILG-----DNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKF  331 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhC-----CceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHH
Confidence            36899999999999999999999982     34555554431110      0001100         000111100 00 


Q ss_pred             -------HHH----------HHHhcCCCCEEEEcCCCCch-----------HH--HHHHHHHHHH--cCCcEEEEEEecC
Q 047717           64 -------RSE----------VDRSVSKDNIIIVDSLNSIK-----------GY--RYELWCLARA--AGIRYCVLYCDLE  111 (303)
Q Consensus        64 -------~~~----------v~~~L~~~~~VIvD~~n~~k-----------~~--R~~l~~~ak~--~~~~~~vI~l~~~  111 (303)
                             ...          +...+..+.+||+|-..+..           +.  ..++..+...  ...+..+||++++
T Consensus       332 A~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~  411 (580)
T PHA03132        332 ATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLN  411 (580)
T ss_pred             hhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCC
Confidence                   001          11134678899999654221           10  0122222221  1347899999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717          112 EDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus       112 ~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      ++++.+|+.+|++..+...+.+.+.++.+.|..
T Consensus       412 pe~alkRIkkRgR~~E~~IdleYL~rLre~Y~~  444 (580)
T PHA03132        412 SEENLRRVKKRGRKEEKGINLTYLKELNWAYHA  444 (580)
T ss_pred             HHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHH
Confidence            999999999998644333467888888877664

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.66  E-value=2.1e-07  Score=76.14  Aligned_cols=134  Identities=19%  Similarity=0.159  Sum_probs=88.5

Q ss_pred             CE-EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            1 MA-LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         1 M~-LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      || +.++.|+.||||||+...+...+..     .+++++.+.+.......-..+..-+..| .....+..+.+.+..+++
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~~-----~~~~VN~D~iA~~i~p~~p~~~~i~A~r-~ai~~i~~~I~~~~~F~~   74 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLLP-----GIVFVNADEIAAQISPDNPTSAAIQAAR-VAIDRIARLIDLGRPFIA   74 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhcC-----CeEEECHHHHhhhcCCCCchHHHHHHHH-HHHHHHHHHHHcCCCcce
Confidence            54 7789999999999998765554432     3455554433211111111112222333 223345566778899999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEec-CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDL-EEDHCRKWNKERHEKGEAAYDDKIFEDLVRR  141 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~-~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r  141 (303)
                      +.+..-++++.- ...||+.|+-....|+-. +.|.+.+|...|-..|++..+++.+++-+.|
T Consensus        75 ETtLS~~s~~~~-ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~r  136 (187)
T COG4185          75 ETTLSGPSILEL-IKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRR  136 (187)
T ss_pred             EEeeccchHHHH-HHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence            999888887754 457789998777777655 5678999999999988899999877654443

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.65  E-value=1.9e-07  Score=84.98  Aligned_cols=119  Identities=22%  Similarity=0.306  Sum_probs=64.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc----------ccCCCchhhHHHHHHHHHHHH----
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN----------QSYASMPAEKNLRGVLRSEVD----   68 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~----------~~y~~~~~e~~~r~~l~~~v~----   68 (303)
                      +|.|+|++||||||+|+.|...+.....+..+.+++.+++.....          ..+.++.+-..+...+.....    
T Consensus        64 IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~~~  143 (290)
T TIGR00554        64 IISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGKPN  143 (290)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCCCc
Confidence            788999999999999999988876321122455555444332110          011111111112212211100    


Q ss_pred             ------------------HhcCCCCEEEEcCCCCchHHH----HHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           69 ------------------RSVSKDNIIIVDSLNSIKGYR----YELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        69 ------------------~~L~~~~~VIvD~~n~~k~~R----~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                                        .......+||++|.+....-+    ..-+...+  +.-...||+++|.+.+.+|..+|.
T Consensus       144 v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~--d~~D~~IyvDa~~d~~~~w~i~R~  218 (290)
T TIGR00554       144 VTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVS--DFVDFSIYVDAEEDLLQTWYINRF  218 (290)
T ss_pred             eecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHH--HhCCEEEEEECCHHHHHHHHHHHH
Confidence                              012346799999987542111    00011111  223459999999999999988874

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.63  E-value=1e-07  Score=82.11  Aligned_cols=42  Identities=10%  Similarity=0.072  Sum_probs=29.7

Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      .+.+||+|....+..--+      +.   -..+|+++||.+++.+|+.+|.
T Consensus       102 ~~~~vi~e~pLL~E~~~~------~~---~D~vi~V~a~~e~r~~RL~~R~  143 (196)
T PRK14732        102 EGKLVIWEVPLLFETDAY------TL---CDATVTVDSDPEESILRTISRD  143 (196)
T ss_pred             cCCcEEEEeeeeeEcCch------hh---CCEEEEEECCHHHHHHHHHHcC
Confidence            456888898765432111      11   2459999999999999999994

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.63  E-value=2.7e-07  Score=94.96  Aligned_cols=105  Identities=11%  Similarity=0.067  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCc-----EEEEEEecCHHH-HHHHHHHhhhcCCCCCC
Q 047717           58 NLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIR-----YCVLYCDLEEDH-CRKWNKERHEKGEAAYD  131 (303)
Q Consensus        58 ~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~-----~~vI~l~~~~e~-~~~R~~~R~~~~~~~~~  131 (303)
                      .+|..+.. .+|.+.....+|+||               ++.|+.     .+.||+++++++ +.+|..+...   ...-
T Consensus       174 ~VR~~l~~-~qr~~~~~~~~V~eG---------------RDigTvVfPdA~~KifL~As~e~RA~RR~~e~~~---~~~~  234 (863)
T PRK12269        174 AIRAIMTG-KIRSAVCGARVVCEG---------------RDLTTVVFVDADLKCYLDASIEARVARRWAQGTS---RLSK  234 (863)
T ss_pred             HHHHHHHH-HHHHHHhcCCEEEEC---------------CCCccEECCCCCEEEEEECCHHHHHHHHHHhhhc---cCCH
Confidence            44544443 334444555799999               444542     358999999988 5666655432   1224


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHhccC
Q 047717          132 DKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVD  184 (303)
Q Consensus       132 ~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~~~  184 (303)
                      ++++.++.+|...  +.+|--+||-....+ ..++++...++++++.|++.+.
T Consensus       235 ~~i~~~i~~RD~~--D~~R~~~pL~~a~dA-i~iDts~l~ieevv~~i~~~~~  284 (863)
T PRK12269        235 QELEQRMRARDAH--DRARTVGGLRCAPDA-LYVDTSCLTIEEVCERIAREAH  284 (863)
T ss_pred             HHHHHHHHHhhhh--hccCccCCCccCCCe-EEEECCCCCHHHHHHHHHHHHH
Confidence            5788889888775  567777888766443 4455666778888887775443

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.61  E-value=7e-07  Score=76.75  Aligned_cols=24  Identities=38%  Similarity=0.477  Sum_probs=22.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      +|.|+|++||||||+++.|+..+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999883

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.60  E-value=1.4e-07  Score=79.92  Aligned_cols=24  Identities=42%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|.|+|.|||||||+++.|++ ++.
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~   24 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGI   24 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCC
Confidence            589999999999999999988 554

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.59  E-value=1.4e-06  Score=76.85  Aligned_cols=117  Identities=20%  Similarity=0.208  Sum_probs=63.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccE-EEecCCcc--------CC-CccccCCCchhhHHHHHHHHHHH-----
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETV-RIIDEASF--------HL-DRNQSYASMPAEKNLRGVLRSEV-----   67 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v-~~~~~~~~--------~~-~~~~~y~~~~~e~~~r~~l~~~v-----   67 (303)
                      +|.|+|++||||||+++.|+..+........+ +.+|+...        +. .....+ +...-..+...+....     
T Consensus        35 iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~-~~~d~~~~~~~l~~l~~~~~~  113 (229)
T PRK09270         35 IVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAP-ETFDVAGLAALLRRLRAGDDE  113 (229)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCC-CCCCHHHHHHHHHHHHcCCCc
Confidence            78999999999999999999998764322223 33443211        00 000111 1111111221221110     


Q ss_pred             ----------HHh------c-CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           68 ----------DRS------V-SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        68 ----------~~~------L-~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                                ...      + ....+||+||....... ..+..+..   .-.++||++||.+++++|...|..
T Consensus       114 i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~-~~~~~l~~---~~D~vi~v~~~~~~~~~R~~~R~~  183 (229)
T PRK09270        114 VYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE-EPWRRLAG---LFDFTIFLDAPAEVLRERLVARKL  183 (229)
T ss_pred             eecccCCcccCCCCCCceEecCCCCEEEEcCcceeecc-ccHHHHHh---hCCEEEEEECCHHHHHHHHHHHHH
Confidence                      000      0 13568999997653211 01111111   123699999999999999999964

>PRK06761 hypothetical protein; Provisional

Probab=98.59  E-value=4e-07  Score=82.36  Aligned_cols=120  Identities=17%  Similarity=0.200  Sum_probs=69.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHH---HHHHHHHHHhcCCCCE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLR---GVLRSEVDRSVSKDNI   76 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r---~~l~~~v~~~L~~~~~   76 (303)
                      ++|+|+|+|||||||+++.|++.+...+++..+..-.+...  .......+........++   ..-.....+.+..|..
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~~   83 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGDY   83 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCCe
Confidence            48999999999999999999999976533322222111111  111111222211112221   1111234445567777


Q ss_pred             EEEcCCCCchHHHHHHHH-HHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           77 IIVDSLNSIKGYRYELWC-LARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        77 VIvD~~n~~k~~R~~l~~-~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +|+-..-....||..+.. ..  ....+..+| .+|.+...+|...|..
T Consensus        84 ~i~~~~~l~~~yr~~~~~~~~--~~~~v~~~h-~~p~e~i~~R~~~rw~  129 (282)
T PRK06761         84 YLLPYRKIKNEFGDQFSDELF--NDISKNDIY-ELPFDKNTELITDRWN  129 (282)
T ss_pred             EEEEehhhhHHHhhhhhhhhc--ccceeeeee-cCCHHHHHHHHHHHHH
Confidence            777776666777777663 11  112344577 9999999999988754

>PLN02348 phosphoribulokinase

Probab=98.58  E-value=5e-07  Score=84.80  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=24.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+|.|+|.+||||||+|+.|++.|+.
T Consensus        50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~   75 (395)
T PLN02348         50 VVIGLAADSGCGKSTFMRRLTSVFGG   75 (395)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            37899999999999999999999975

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.58  E-value=2.1e-07  Score=66.27  Aligned_cols=23  Identities=52%  Similarity=0.628  Sum_probs=21.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +|+++|.|||||||+++.|++.|
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999998

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.58  E-value=2e-07  Score=80.64  Aligned_cols=26  Identities=42%  Similarity=0.390  Sum_probs=23.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .|.|+|.+||||||+++.|++.++..
T Consensus         8 ~IglTG~iGsGKStv~~~l~~~lg~~   33 (204)
T PRK14733          8 PIGITGGIASGKSTATRILKEKLNLN   33 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            69999999999999999999887653

>TIGR00152 dephospho-CoA kinase

Probab=98.51  E-value=3.3e-07  Score=78.24  Aligned_cols=26  Identities=35%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +|.|+|.|||||||+++.|++..+..
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~   26 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFP   26 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCe
Confidence            48999999999999999999876443

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.51  E-value=4.9e-07  Score=78.58  Aligned_cols=41  Identities=5%  Similarity=-0.033  Sum_probs=29.2

Q ss_pred             CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+||+|+........         ...-..+|++.||.+++.+|+.+|+.
T Consensus       116 ~vvv~e~pLL~e~~~---------~~~~d~ii~V~a~~e~~~~Rl~~R~~  156 (208)
T PRK14731        116 RILVKEAAILFESGG---------DAGLDFIVVVAADTELRLERAVQRGM  156 (208)
T ss_pred             CEEEEEeeeeeecCc---------hhcCCeEEEEECCHHHHHHHHHHcCC
Confidence            688889876543211         01124589999999999999999954

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=98.51  E-value=2.7e-07  Score=79.55  Aligned_cols=26  Identities=46%  Similarity=0.459  Sum_probs=23.5

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |.+|.|+|.|||||||+|+.+++ ++.
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~   27 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGF   27 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCC
Confidence            67999999999999999999988 654

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.50  E-value=1.8e-06  Score=77.18  Aligned_cols=144  Identities=14%  Similarity=0.230  Sum_probs=76.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-Ccc-------------ccCCC---c-hhhHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-DRN-------------QSYAS---M-PAEKNLRGVLR   64 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-~~~-------------~~y~~---~-~~e~~~r~~l~   64 (303)
                      +|.|+|.+||||||+++.|.+.|+..+  ..+.+++.+.++. .+.             ..|+.   . ..-..+.+.+.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~   78 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR   78 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence            589999999999999999999997643  2344444333332 110             12222   1 11111111121


Q ss_pred             HHHH------------------------------HhcCCCCEEEEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEecCHH
Q 047717           65 SEVD------------------------------RSVSKDNIIIVDSLNSI-KGYRYELWCLARAAGIRYCVLYCDLEED  113 (303)
Q Consensus        65 ~~v~------------------------------~~L~~~~~VIvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~~~~e  113 (303)
                      ..-+                              .......++|++|.... ..+..+   +++..+   ..||++++.+
T Consensus        79 ~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~---lr~~~D---lkIfVd~~~d  152 (277)
T cd02029          79 TYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYN---VAQHAD---LLVGVVPIIN  152 (277)
T ss_pred             HHHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHH---HHHhCC---eEEEecCcHH
Confidence            1100                              01234578899997521 111112   333333   4999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceee
Q 047717          114 HCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFE  157 (303)
Q Consensus       114 ~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~  157 (303)
                      .++.|-..|.........+.+++.+..|.  |+. .++-.|.|.
T Consensus       153 lr~irRI~RD~~ERGrs~EsVi~qilrrm--pdy-~~yI~PQ~~  193 (277)
T cd02029         153 LEWIQKIHRDTAERGYSAEAVMDTILRRM--PDY-INYICPQFS  193 (277)
T ss_pred             HHHHHHHHhhhHhhCCCHHHHHHHHHHhC--chH-HhhCCcccc
Confidence            98877777764221123455666666554  443 345556554

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=98.45  E-value=9.9e-08  Score=79.26  Aligned_cols=107  Identities=19%  Similarity=0.228  Sum_probs=59.0

Q ss_pred             CCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHH
Q 047717           10 PSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYR   89 (303)
Q Consensus        10 PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R   89 (303)
                      |||||||+++.||+.|+...++.+..+..  ..+..-.++|. ...+..+|..-...+...+.....||.-|....  ..
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~--~~g~si~~i~~-~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~--~~   75 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE--RTGMSISEIFA-EEGEEAFRELESEALRELLKENNCVIACGGGIV--LK   75 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHH--HHTSHHHHHHH-HHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGG--GS
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHH--HhCCcHHHHHH-cCChHHHHHHHHHHHHHHhccCcEEEeCCCCCc--Cc
Confidence            79999999999999998753222211100  11111112222 123455665555556666666566665543211  11


Q ss_pred             HHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           90 YELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        90 ~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+.+.+.+..+.   +||++++.+.+.+|+..+..
T Consensus        76 ~~~~~~L~~~g~---vI~L~~~~~~l~~Rl~~~~~  107 (158)
T PF01202_consen   76 EENRELLKENGL---VIYLDADPEELAERLRARDN  107 (158)
T ss_dssp             HHHHHHHHHHSE---EEEEE--HHHHHHHHHHHCT
T ss_pred             HHHHHHHHhCCE---EEEEeCCHHHHHHHHhCCCC
Confidence            222333344444   99999999999999987754

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.44  E-value=6.7e-07  Score=75.92  Aligned_cols=119  Identities=21%  Similarity=0.220  Sum_probs=63.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-----------------ccC---------CCc----cccCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-----------------SFH---------LDR----NQSYA   51 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-----------------~~~---------~~~----~~~y~   51 (303)
                      ++|.|+|..||||||+++.|++ ++..     ++-.|+.                 .|+         +++    .-.|.
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~-----vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~   74 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFP-----VIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFS   74 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-E-----EEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTT
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCC-----EECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhc
Confidence            4799999999999999999988 6543     3322210                 000         000    01222


Q ss_pred             CchhhHHHHHHHHHHHH----Hhc---CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           52 SMPAEKNLRGVLRSEVD----RSV---SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        52 ~~~~e~~~r~~l~~~v~----~~L---~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +...-+.+.+.+...+.    +.+   .....+|+|.+.++..--         ...-..+|++.||.++..+|..+|..
T Consensus        75 d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~---------~~~~D~vi~V~a~~e~ri~Rl~~R~~  145 (180)
T PF01121_consen   75 DPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGL---------EKLCDEVIVVYAPEEIRIKRLMERDG  145 (180)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTG---------GGGSSEEEEEE--HHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhH---------hhhhceEEEEECCHHHHHHHHHhhCC
Confidence            22222222222222222    211   233789999987654310         11124599999999999999999853


Q ss_pred             cCCCCCCHHHHHHHHH
Q 047717          125 KGEAAYDDKIFEDLVR  140 (303)
Q Consensus       125 ~~~~~~~~e~~~~l~~  140 (303)
                           ++.+.+.....
T Consensus       146 -----~~~~~~~~ri~  156 (180)
T PF01121_consen  146 -----LSEEEAEARIA  156 (180)
T ss_dssp             -----STHHHHHHHHH
T ss_pred             -----CcHHHHHHHHH
Confidence                 45655544443

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.42  E-value=9.4e-07  Score=78.60  Aligned_cols=117  Identities=23%  Similarity=0.289  Sum_probs=72.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc----------cccCCCchhhHHHHHHHHHHHH----
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR----------NQSYASMPAEKNLRGVLRSEVD----   68 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~----------~~~y~~~~~e~~~r~~l~~~v~----   68 (303)
                      +|.++|.||+||||.|+.|+..+....-...+-++-.++|+...          ..++.++.+-..+...+. .++    
T Consensus        84 IIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~-~vK~~~~  162 (283)
T COG1072          84 IIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLS-DVKAGKP  162 (283)
T ss_pred             EEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHH-HHhcCCC
Confidence            79999999999999999999998765333346666666665421          112222222222221221 111    


Q ss_pred             -------------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           69 -------------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        69 -------------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                                         ......+++|++|.|.......++ .+   .+.-...||++++.+.+.+|..+|--
T Consensus       163 ~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~-~~---sdffDfSIyvDa~~~~le~wyi~Rfl  233 (283)
T COG1072         163 DVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWL-FL---SDFFDFSIYVDADEELLEERYIERFL  233 (283)
T ss_pred             ccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccc-cc---cccceEEEEecCCHHHHHHHHHHHHH
Confidence                               012345799999988554322111 11   23345699999999999999999864

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.41  E-value=1.6e-06  Score=71.50  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=23.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      |..++++|.||+||||+.+...+.+
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH
Confidence            5689999999999999999998887

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.39  E-value=2.1e-05  Score=64.70  Aligned_cols=141  Identities=15%  Similarity=0.161  Sum_probs=82.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE----ec-CCccCCCccc--------------cCCCchhhHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRI----ID-EASFHLDRNQ--------------SYASMPAEKNLRGV   62 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~----~~-~~~~~~~~~~--------------~y~~~~~e~~~r~~   62 (303)
                      .+|++.|++|+||-|+-......+...   ...++    +. ..+.+-+.+.              .|.-+...-.++--
T Consensus         6 ~lI~vvGPSGAGKDtl~~~ar~~l~~~---~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Yg   82 (192)
T COG3709           6 RLIAVVGPSGAGKDTLLDAARARLAGR---PRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYG   82 (192)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHhccC---CceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcccc
Confidence            589999999999999999988888653   11211    11 1111111111              11100000001112


Q ss_pred             HHHHHHHhcCCCCEEEEcCCC-CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717           63 LRSEVDRSVSKDNIIIVDSLN-SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRR  141 (303)
Q Consensus        63 l~~~v~~~L~~~~~VIvD~~n-~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r  141 (303)
                      +-..+..+|..|.+||+.+.- +.+..|       +.+. ...+|.+.++++++.+|+.+|+++    ..+++..+|...
T Consensus        83 ip~eId~wl~~G~vvl~NgSRa~Lp~ar-------rry~-~Llvv~ita~p~VLaqRL~~RGRE----s~eeI~aRL~R~  150 (192)
T COG3709          83 IPAEIDLWLAAGDVVLVNGSRAVLPQAR-------RRYP-QLLVVCITASPEVLAQRLAERGRE----SREEILARLARA  150 (192)
T ss_pred             CchhHHHHHhCCCEEEEeccHhhhHHHH-------Hhhh-cceeEEEecCHHHHHHHHHHhccC----CHHHHHHHHHhh
Confidence            234577888999999999853 222222       2233 556888999999999999999873    256666666543


Q ss_pred             hcCCCCCCCCCCceeeeCCC
Q 047717          142 FEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       142 ~E~P~~~~rwd~pl~~i~~~  161 (303)
                      -.-   .. -+.++++|+.+
T Consensus       151 a~~---~~-~~~dv~~idNs  166 (192)
T COG3709         151 ARY---TA-GPGDVTTIDNS  166 (192)
T ss_pred             ccc---cc-CCCCeEEEcCC
Confidence            221   11 15578888754

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.36  E-value=3e-07  Score=74.62  Aligned_cols=102  Identities=16%  Similarity=0.224  Sum_probs=55.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcccc---CC-------------ccEEEecCCccC--CCccccCCCchhhHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESE---AK-------------ETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLR   64 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~---~~-------------~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~   64 (303)
                      +|+|+|++||||||+++.|++.+....   ..             .+...++...+.  +..............+.+...
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            588999999999999999998865321   00             011111110000  000000000000011122344


Q ss_pred             HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717           65 SEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE  111 (303)
Q Consensus        65 ~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~  111 (303)
                      +.+.+.+.+|.++|+|...  .+    + ...++......+||+.+|
T Consensus        81 ~~i~~~~~~g~~~il~~~~--~~----~-~~l~~~~~~~~~I~i~~~  120 (137)
T cd00071          81 AAVEEALAEGKIVILEIDV--QG----A-RQVKKSYPDAVSIFILPP  120 (137)
T ss_pred             HHHHHHHhCCCeEEEEecH--HH----H-HHHHHcCCCeEEEEEECC
Confidence            5677788899999999832  12    1 223456677889999998

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.34  E-value=4.8e-06  Score=75.82  Aligned_cols=118  Identities=17%  Similarity=0.218  Sum_probs=68.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcccc-CCccEEE------ecCCccCCCccccCCC--------chhh----------H
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESE-AKETVRI------IDEASFHLDRNQSYAS--------MPAE----------K   57 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~~------~~~~~~~~~~~~~y~~--------~~~e----------~   57 (303)
                      +|+|+|++||||||+|..|+++|+... ++.+.+.      ++.+.+.......|..        ...+          .
T Consensus        94 iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~~~~  173 (301)
T PRK04220         94 IILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFERHVE  173 (301)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHHHHH
Confidence            799999999999999999999996531 1111100      1111000000012210        0111          1


Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhhh
Q 047717           58 NLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERHE  124 (303)
Q Consensus        58 ~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~~  124 (303)
                      .+...+...+.+++..|..+|++|....++|-....   .. ....+.++|.++ .+..++|...|.+
T Consensus       174 ~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~---~~-~~~~i~~~l~i~~ee~h~~RF~~R~~  237 (301)
T PRK04220        174 PVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY---LE-NPNVFMFVLTLSDEEAHKARFYARAR  237 (301)
T ss_pred             HHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh---hc-CCCEEEEEEEECCHHHHHHHHHHHHh
Confidence            111224455677888999999999999988754322   11 233455566654 5678899988875

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.30  E-value=2.6e-06  Score=72.35  Aligned_cols=115  Identities=20%  Similarity=0.237  Sum_probs=63.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC-CccCCCccccCCCchhhH------------------HHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE-ASFHLDRNQSYASMPAEK------------------NLRGV   62 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~-~~~~~~~~~~y~~~~~e~------------------~~r~~   62 (303)
                      .+|+|+|++||||||+++.|.+.+.... ...+..... ...+-..+..|..-..+.                  .+.+.
T Consensus         3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~-~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    3 RPIVLVGPSGSGKSTLAKRLIQEFPDKF-GRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHSTTTE-EEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhccccc-ccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            4789999999999999999999876421 111111110 000000000110000000                  00011


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhhh
Q 047717           63 LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERHE  124 (303)
Q Consensus        63 l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~~  124 (303)
                      ..+.+.+.+..|..+|+|..  ..+.     ...+..+....+||+.++ .+.+.+|+.+|+.
T Consensus        82 ~~~~i~~~~~~gk~~il~~~--~~g~-----~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~  137 (183)
T PF00625_consen   82 SKSAIDKVLEEGKHCILDVD--PEGV-----KQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD  137 (183)
T ss_dssp             EHHHHHHHHHTTTEEEEEET--HHHH-----HHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH
T ss_pred             ccchhhHhhhcCCcEEEEcc--HHHH-----HHHHhcccCceEEEEEccchHHHHHHHhcccc
Confidence            22456677788999999874  3332     122445777889999765 6778888877754

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.29  E-value=9.4e-06  Score=66.74  Aligned_cols=99  Identities=21%  Similarity=0.319  Sum_probs=57.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC---C----ccCC-----Cc-----cccCCCch------hhHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE---A----SFHL-----DR-----NQSYASMP------AEKN   58 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~---~----~~~~-----~~-----~~~y~~~~------~e~~   58 (303)
                      .-|+++|.|||||||++..|++.|...++...=++..+   .    +|.+     .+     ...+....      ..+.
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~   85 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG   85 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence            45999999999999999999999987632111011110   0    0000     00     00111000      1122


Q ss_pred             HHHHHHHHHHHhcCCCCEEEEcCC----CCchHHHHHHHHHHHHcC
Q 047717           59 LRGVLRSEVDRSVSKDNIIIVDSL----NSIKGYRYELWCLARAAG  100 (303)
Q Consensus        59 ~r~~l~~~v~~~L~~~~~VIvD~~----n~~k~~R~~l~~~ak~~~  100 (303)
                      +......++++++..-+++|+|-.    +-.+.|+..+..+.+...
T Consensus        86 le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~k  131 (179)
T COG1618          86 LEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGK  131 (179)
T ss_pred             HHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCC
Confidence            222444567777777799999964    346788888887765443

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.29  E-value=1.4e-05  Score=78.49  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=26.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .+|.|+|++||||||+|+.|+..+..    ..++.+|+
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglLp~----vgvIsmDd   99 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFMPS----IAVISMDN   99 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhCCC----cEEEEEcc
Confidence            48999999999999999999988642    23455554

>PRK07429 phosphoribulokinase; Provisional

Probab=98.28  E-value=1.1e-05  Score=74.93  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=27.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .+|.|+|.+||||||+++.|+..++..  ...++..|+
T Consensus         9 ~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd   44 (327)
T PRK07429          9 VLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDD   44 (327)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEecc
Confidence            389999999999999999999998743  223444443

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.28  E-value=7.3e-06  Score=74.19  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=22.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|.|+|.+||||||+++.|+..+..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~   25 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGS   25 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCC
Confidence            5889999999999999999998864

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.20  E-value=4.7e-06  Score=79.32  Aligned_cols=27  Identities=41%  Similarity=0.395  Sum_probs=24.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |..|.|+|.+||||||+++.|++ ++..
T Consensus         1 m~~IgltG~igsGKStv~~~L~~-~G~~   27 (395)
T PRK03333          1 MLRIGLTGGIGAGKSTVAARLAE-LGAV   27 (395)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-CCCe
Confidence            88899999999999999999987 5554

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.20  E-value=2.5e-05  Score=71.83  Aligned_cols=27  Identities=41%  Similarity=0.513  Sum_probs=24.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      ++|+|+|++||||||+|..|++.++..
T Consensus         5 ~~i~i~GptgsGKt~la~~la~~~~~~   31 (307)
T PRK00091          5 KVIVIVGPTASGKTALAIELAKRLNGE   31 (307)
T ss_pred             eEEEEECCCCcCHHHHHHHHHHhCCCc
Confidence            589999999999999999999998754

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=98.16  E-value=6.6e-06  Score=69.86  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=23.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +|.|+|..+|||||+|+.|.+.|...
T Consensus         6 ivgiSG~TnsGKTTLak~l~~~f~~~   31 (225)
T KOG3308|consen    6 IVGISGCTNSGKTTLAKSLHRFFPGC   31 (225)
T ss_pred             EEEeecccCCCHhHHHHHHHHHccCC
Confidence            78899999999999999999999753

>PLN02165 adenylate isopentenyltransferase

Probab=98.16  E-value=1e-05  Score=74.61  Aligned_cols=123  Identities=16%  Similarity=0.229  Sum_probs=65.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEE-EecCCcc-----------CCCcc--ccCCCc---hhhHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVR-IIDEASF-----------HLDRN--QSYASM---PAEKNLRGVLR   64 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~-~~~~~~~-----------~~~~~--~~y~~~---~~e~~~r~~l~   64 (303)
                      ++|+|.|++||||||+|..|++.++...++.+.+ +.....+           ++...  ......   .....++....
T Consensus        44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~~a~  123 (334)
T PLN02165         44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRSLAS  123 (334)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHHHHH
Confidence            3899999999999999999999987543333222 1111100           11000  000110   01123332333


Q ss_pred             HHHHHhcCCCCEEEE-cCCC-CchHHHHHHH-----HH-------HHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           65 SEVDRSVSKDNIIIV-DSLN-SIKGYRYELW-----CL-------ARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        65 ~~v~~~L~~~~~VIv-D~~n-~~k~~R~~l~-----~~-------ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ..+....+.+...|+ =|+. |++..-+.+.     ..       .......+++++++++.+.+.+|+.+|-.
T Consensus       124 ~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd  197 (334)
T PLN02165        124 LSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVD  197 (334)
T ss_pred             HHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHH
Confidence            345555556655444 4444 3333222110     00       00012456788999999999999999975

>PLN02772 guanylate kinase

Probab=98.11  E-value=1.6e-05  Score=74.81  Aligned_cols=128  Identities=16%  Similarity=0.240  Sum_probs=67.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccE-----------------EEecCCccCC-CccccCCC-chhhHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETV-----------------RIIDEASFHL-DRNQSYAS-MPAEKNLRGV   62 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v-----------------~~~~~~~~~~-~~~~~y~~-~~~e~~~r~~   62 (303)
                      .+|+|+|++||||||+.+.|.+.+.... ...+                 ++++.+.|.. .....|.. ......+.+.
T Consensus       136 k~iVlsGPSGvGKsTL~~~L~~~~p~~~-~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YGT  214 (398)
T PLN02772        136 KPIVISGPSGVGKGTLISMLMKEFPSMF-GFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGT  214 (398)
T ss_pred             cEEEEECCCCCCHHHHHHHHhhhccccc-cccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccccc
Confidence            3899999999999999999988764311 1111                 1111000000 00000100 0001223334


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEE-EecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717           63 LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLY-CDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRR  141 (303)
Q Consensus        63 l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~-l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r  141 (303)
                      -++.+...+..|..+|+|-  -..+.+ .++.    ......+|+ +..+.+++.+|+..|+.     ..++.+....++
T Consensus       215 sk~~V~~vl~~Gk~vILdL--D~qGar-~Lr~----~~l~~v~IFI~PPSlEeLe~RL~~RGt-----eseE~I~kRL~~  282 (398)
T PLN02772        215 SIEAVEVVTDSGKRCILDI--DVQGAR-SVRA----SSLEAIFIFICPPSMEELEKRLRARGT-----ETEEQIQKRLRN  282 (398)
T ss_pred             cHHHHHHHHHhCCcEEEeC--CHHHHH-HHHH----hcCCeEEEEEeCCCHHHHHHHHHhcCC-----CCHHHHHHHHHH
Confidence            4556777888999999885  223322 2221    112233444 45568899999998865     245555555555


Q ss_pred             h
Q 047717          142 F  142 (303)
Q Consensus       142 ~  142 (303)
                      +
T Consensus       283 A  283 (398)
T PLN02772        283 A  283 (398)
T ss_pred             H
Confidence            5

>PHA00729 NTP-binding motif containing protein

Probab=98.09  E-value=2.3e-05  Score=68.53  Aligned_cols=115  Identities=14%  Similarity=0.107  Sum_probs=57.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      .|+|+|.||+||||+|..|++.+...   ...+..++..........|-+   ...+...+...... ..+-.++|+|+.
T Consensus        19 nIlItG~pGvGKT~LA~aLa~~l~~~---l~~l~~~~~~~d~~~~~~fid---~~~Ll~~L~~a~~~-~~~~dlLIIDd~   91 (226)
T PHA00729         19 SAVIFGKQGSGKTTYALKVARDVFWK---LNNLSTKDDAWQYVQNSYFFE---LPDALEKIQDAIDN-DYRIPLIIFDDA   91 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhh---cccccchhhHHhcCCcEEEEE---HHHHHHHHHHHHhc-CCCCCEEEEeCC
Confidence            58999999999999999999987521   111111111110001111111   11222233322211 122257899983


Q ss_pred             C--CchH-HHH----HHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717           83 N--SIKG-YRY----ELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        83 n--~~k~-~R~----~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .  ..+. |..    .++.+..... ....+++..++++.+.+++.+|+-
T Consensus        92 G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~  141 (226)
T PHA00729         92 GIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW  141 (226)
T ss_pred             chhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence            2  1111 111    1112222222 233477788899999999998863

>PRK09087 hypothetical protein; Validated

Probab=98.07  E-value=5.2e-05  Score=66.77  Aligned_cols=128  Identities=16%  Similarity=0.067  Sum_probs=68.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCc-------------cEEEecCCccCCCccccCCCchhhHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKE-------------TVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVD   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~-------------~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~   68 (303)
                      |.++|.|++||||||+++.+++..+..++..             +.+++||...       ..  ..+    ..++..+.
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~-------~~--~~~----~~lf~l~n  111 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDA-------GG--FDE----TGLFHLIN  111 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCC-------CC--CCH----HHHHHHHH
Confidence            4689999999999999999987765432211             1233333211       11  111    23555666


Q ss_pred             HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh-hhcCCCCCCHHHHHHHHHHhc
Q 047717           69 RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER-HEKGEAAYDDKIFEDLVRRFE  143 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R-~~~~~~~~~~e~~~~l~~r~E  143 (303)
                      .....|..+|+-+...-..+.-.+-.+.-... ...++.+..+.+..+....+| .....-..++++++-+..+.+
T Consensus       112 ~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~-~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~  186 (226)
T PRK09087        112 SVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLK-AATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME  186 (226)
T ss_pred             HHHhCCCeEEEECCCChHHhccccccHHHHHh-CCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence            66666777777775433332211111111111 113666766655433333322 221113578899988888866

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.04  E-value=4.3e-05  Score=60.42  Aligned_cols=68  Identities=28%  Similarity=0.485  Sum_probs=40.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLN   83 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n   83 (303)
                      |+|.|+||+||||+++.+++.++.     .++.++-..+.    ..|. ...++.++..+.. +... .+..++++|..-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~----~~~~-~~~~~~i~~~~~~-~~~~-~~~~vl~iDe~d   68 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELI----SSYA-GDSEQKIRDFFKK-AKKS-AKPCVLFIDEID   68 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHH----TSST-THHHHHHHHHHHH-HHHT-STSEEEEEETGG
T ss_pred             CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccc----cccc-ccccccccccccc-cccc-ccceeeeeccch
Confidence            689999999999999999999863     34555532221    0111 2234444433432 2111 124788888743

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.02  E-value=0.00011  Score=65.01  Aligned_cols=26  Identities=15%  Similarity=0.266  Sum_probs=22.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +.++|+|+||+|||+++..++..+..
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~   71 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQ   71 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999987764

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=97.97  E-value=1.5e-05  Score=67.74  Aligned_cols=113  Identities=14%  Similarity=0.158  Sum_probs=65.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE-----------------ecCCccC----CC----ccccCCCchh
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRI-----------------IDEASFH----LD----RNQSYASMPA   55 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~-----------------~~~~~~~----~~----~~~~y~~~~~   55 (303)
                      |-+|.++|..||||||+++.+. .++...++.|++.                 ++++-+.    +.    +.-.|.+...
T Consensus         1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~   79 (225)
T KOG3220|consen    1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK   79 (225)
T ss_pred             CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence            7899999999999999999887 5554433322211                 1111000    00    0113443221


Q ss_pred             --------hHHHHHHHHHHHHH-hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           56 --------EKNLRGVLRSEVDR-SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        56 --------e~~~r~~l~~~v~~-~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                              ...+|..++..+.+ .+.....+|+|.+.....         +-...-..+|.+.|+.++..+|+.+|.
T Consensus        80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---------~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd  147 (225)
T KOG3220|consen   80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---------KLLKICHKTVVVTCDEELQLERLVERD  147 (225)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---------hHHhheeeEEEEEECcHHHHHHHHHhc
Confidence                    12233333333444 445557888998653322         222334457888999999999999996

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.96  E-value=2.2e-05  Score=66.09  Aligned_cols=26  Identities=38%  Similarity=0.344  Sum_probs=23.8

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |++|+|+|.|||||||+|..|+..++
T Consensus         1 ~~~ili~G~~~sGKS~~a~~l~~~~~   26 (170)
T PRK05800          1 GMLILVTGGARSGKSRFAERLAAQSG   26 (170)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHcC
Confidence            67899999999999999999998865

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=97.95  E-value=8.7e-05  Score=66.82  Aligned_cols=96  Identities=24%  Similarity=0.300  Sum_probs=57.4

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc--CCCCEEE
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV--SKDNIII   78 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L--~~~~~VI   78 (303)
                      |.+|+|+|++||||||..+.|.+ ++       ...+|..  ..            ..+. .+.......-  ...--++
T Consensus         1 m~~vIiTGlSGaGKs~Al~~lED-~G-------y~cvDNl--P~------------~Ll~-~l~~~~~~~~~~~~~~Ai~   57 (284)
T PF03668_consen    1 MELVIITGLSGAGKSTALRALED-LG-------YYCVDNL--PP------------SLLP-QLIELLAQSNSKIEKVAIV   57 (284)
T ss_pred             CeEEEEeCCCcCCHHHHHHHHHh-cC-------eeEEcCC--cH------------HHHH-HHHHHHHhcCCCCceEEEE
Confidence            89999999999999999887643 22       3444421  00            1111 1111221110  1234577


Q ss_pred             EcCCCCchHHHHHHHH---HHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           79 VDSLNSIKGYRYELWC---LARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~---~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      +|.-+.  ++-..+..   ..+..+..+.+||++|+.+++.+|-.+
T Consensus        58 iD~R~~--~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~e  101 (284)
T PF03668_consen   58 IDIRSR--EFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSE  101 (284)
T ss_pred             EeCCCh--HHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHh
Confidence            887442  23233322   234558899999999999999988764

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=97.95  E-value=1e-05  Score=66.32  Aligned_cols=81  Identities=15%  Similarity=0.174  Sum_probs=57.6

Q ss_pred             HHHHcCC-cEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHH-HHhcCCCCCCCCCCceeeeCCCCcccccchHHH
Q 047717           95 LARAAGI-RYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLV-RRFEKPDRRNRWDSPLFELCPYKDAIENSSAAI  172 (303)
Q Consensus        95 ~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~-~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~  172 (303)
                      +...... |.++||+++|+++|.+|+.+|++..+...+.+.+..+. ..|+.--... -..|.+++++++.++..+...+
T Consensus        60 l~~~~~~~pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~-~~~~vl~id~~~~d~~~~~~~~  138 (146)
T PF01712_consen   60 LIEEIPKSPDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKY-DSTPVLVIDADNLDFVENPEDI  138 (146)
T ss_dssp             HHHHCCHH-SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCC-TTTTGCEEEECEEECCSHHTTH
T ss_pred             HHHHhhccCCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhC-CCCceEEEECCccCcccCHHHH
Confidence            4455566 88999999999999999999999776678899999999 7888743322 2469999998765565544445


Q ss_pred             HHHH
Q 047717          173 LDAV  176 (303)
Q Consensus       173 ~ei~  176 (303)
                      +.++
T Consensus       139 ~~~~  142 (146)
T PF01712_consen  139 EQVI  142 (146)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=97.87  E-value=5.5e-05  Score=65.73  Aligned_cols=119  Identities=17%  Similarity=0.221  Sum_probs=67.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcccc--CCcc----EEEecCCccCCCccc--cCCCchhhHHHHH--------HHHH-
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESE--AKET----VRIIDEASFHLDRNQ--SYASMPAEKNLRG--------VLRS-   65 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~--~~~~----v~~~~~~~~~~~~~~--~y~~~~~e~~~r~--------~l~~-   65 (303)
                      ++.+.|.||+||||++..+.+.+....  ++.+    .+++..++||+.+..  .|.+.......|+        .+.+ 
T Consensus       121 l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~lfl~l  200 (323)
T KOG2702|consen  121 LTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNLFLQL  200 (323)
T ss_pred             eeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHHHHHHH
Confidence            789999999999999999998765431  1111    133566677764432  3443322211111        1111 


Q ss_pred             --HH-------------HHhc-----------CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717           66 --EV-------------DRSV-----------SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN  119 (303)
Q Consensus        66 --~v-------------~~~L-----------~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~  119 (303)
                        .+             .+++           ...++||++|.. +--.-..|..+.+-...   ..|+++..+++.+|.
T Consensus       201 ~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnY-lLl~~~~Wkdi~k~~d~---k~~idV~~~~a~~RV  276 (323)
T KOG2702|consen  201 CKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNY-LLLDQENWKDIYKTLDD---KYKIDVDYEAAEERV  276 (323)
T ss_pred             HHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccE-EEecCccHHHHHHHhhh---heeccccHHHHHHHH
Confidence              11             1111           245789999953 21111122233343333   578999999999999


Q ss_pred             HHhhhc
Q 047717          120 KERHEK  125 (303)
Q Consensus       120 ~~R~~~  125 (303)
                      ++|.-.
T Consensus       277 a~RHl~  282 (323)
T KOG2702|consen  277 AKRHLQ  282 (323)
T ss_pred             HHHhhc
Confidence            999754

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.85  E-value=7.6e-05  Score=64.99  Aligned_cols=36  Identities=28%  Similarity=0.330  Sum_probs=27.5

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      -+++|+|||||||.+....+.|...+....++.+|.
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDP   40 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDP   40 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCC
Confidence            578999999999999999999887643334444443

>PHA03136 thymidine kinase; Provisional

Probab=97.84  E-value=0.00028  Score=65.92  Aligned_cols=43  Identities=21%  Similarity=0.142  Sum_probs=37.0

Q ss_pred             CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717          101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus       101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      .+..+||++++.+++.+|+.+|++.++ ..+.+.+.++...|+.
T Consensus       191 ~pD~IIyL~l~~e~~~~RI~kRgR~~E-~I~~~YL~~L~~~Y~~  233 (378)
T PHA03136        191 HGGNIVIMDLDECEHAERIIARGRPGE-AIDVRFLCALHNIYIC  233 (378)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCCcc-CCCHHHHHHHHHHHHH
Confidence            355789999999999999999999775 7888888888887764

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.82  E-value=0.00022  Score=59.71  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=28.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +++++|+|||||||++..++..+...  +..+.+++-+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcC
Confidence            68999999999999999999988654  4456665533

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.81  E-value=0.00021  Score=58.66  Aligned_cols=118  Identities=15%  Similarity=0.203  Sum_probs=73.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCC--ccEEE--ecCCccCCCccccCCC-----------------chhhHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAK--ETVRI--IDEASFHLDRNQSYAS-----------------MPAEKNLR   60 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~--~~v~~--~~~~~~~~~~~~~y~~-----------------~~~e~~~r   60 (303)
                      .+|+|.|.|.||||++|.++++.+......  .+.+.  +-+...  .....|..                 ..-|...+
T Consensus        24 riVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~--d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~  101 (205)
T COG3896          24 RIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQL--DLARGYTWDSAVEADGLEWVTVHPGPILELAMH  101 (205)
T ss_pred             eEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhh--ccccccccccccccCCceeeEeechhHHHHHHH
Confidence            489999999999999999999988765321  11110  000000  00011111                 11233333


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           61 GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        61 ~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                       ...-++...+..|..||.|+.-..+++-  ..|+-.-.+.++..|-+.||.|+..+|-..|+.
T Consensus       102 -~~r~ai~a~ad~G~~~i~Ddv~~~r~~L--~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~d  162 (205)
T COG3896         102 -SRRRAIRAYADNGMNVIADDVIWTREWL--VDCLRVLEGCRVWMVGVHVPDEEGARRELRRGD  162 (205)
T ss_pred             -HHHHHHHHHhccCcceeehhcccchhhH--HHHHHHHhCCceEEEEeeccHHHHHHHHhhcCC
Confidence             2333455566789999999976655432  234545568999999999999998888777754

>PRK06893 DNA replication initiation factor; Validated

Probab=97.81  E-value=0.00037  Score=61.41  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=23.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |.++|.|+||+|||+++..++..+..
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~   65 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLL   65 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999988754

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.79  E-value=0.0011  Score=57.21  Aligned_cols=134  Identities=21%  Similarity=0.295  Sum_probs=70.8

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCC------------CccccCCCch-------hhH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHL------------DRNQSYASMP-------AEK   57 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~------------~~~~~y~~~~-------~e~   57 (303)
                      |.+++|.|++|+|||.+|-.|++.++..     ++..|..    .+.+            .++ .|-++.       ..+
T Consensus         1 M~v~~i~GpT~tGKt~~ai~lA~~~g~p-----vI~~Driq~y~~l~v~Sgrp~~~el~~~~R-iyL~~r~l~~G~i~a~   74 (233)
T PF01745_consen    1 MKVYLIVGPTGTGKTALAIALAQKTGAP-----VISLDRIQCYPELSVGSGRPTPSELKGTRR-IYLDDRPLSDGIINAE   74 (233)
T ss_dssp             -EEEEEE-STTSSHHHHHHHHHHHH--E-----EEEE-SGGG-GGGTTTTT---SGGGTT-EE-EES----GGG-S--HH
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHhCCC-----EEEecceecccccccccCCCCHHHHcccce-eeeccccccCCCcCHH
Confidence            8999999999999999999999999764     4444421    0000            011 232221       123


Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHH----cCCcEEEEEEecCHHH-HHHHHHHhhhcC--CCCC
Q 047717           58 NLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARA----AGIRYCVLYCDLEEDH-CRKWNKERHEKG--EAAY  130 (303)
Q Consensus        58 ~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~----~~~~~~vI~l~~~~e~-~~~R~~~R~~~~--~~~~  130 (303)
                      .+...+.+.+.+.-. +..+|++|...     --+.|+++.    .+....+.++..+.+. =..|..+|.++.  .+.-
T Consensus        75 ea~~~Li~~v~~~~~-~~~~IlEGGSI-----SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~  148 (233)
T PF01745_consen   75 EAHERLISEVNSYSA-HGGLILEGGSI-----SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSS  148 (233)
T ss_dssp             HHHHHHHHHHHTTTT-SSEEEEEE--H-----HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHHHHHHHhccc-cCceEEeCchH-----HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCC
Confidence            344456666655555 78999999542     223445543    3556777888776554 445555554421  1122


Q ss_pred             CHHHHHHHHHHhcCCC
Q 047717          131 DDKIFEDLVRRFEKPD  146 (303)
Q Consensus       131 ~~e~~~~l~~r~E~P~  146 (303)
                      .+..++++..-+..|.
T Consensus       149 ~~Sll~EL~~lW~~p~  164 (233)
T PF01745_consen  149 GPSLLEELVALWNDPA  164 (233)
T ss_dssp             S--HHHHHHHHHTSTT
T ss_pred             CCcHHHHHHHHHhCcc
Confidence            4588899988877765

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=0.00022  Score=65.02  Aligned_cols=117  Identities=17%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe-c-----------CCccCCCcc--ccCCCc--hhhHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRII-D-----------EASFHLDRN--QSYASM--PAEKNLRGVLRSE   66 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~-~-----------~~~~~~~~~--~~y~~~--~~e~~~r~~l~~~   66 (303)
                      +|+|.|+.|||||.+|-.||.+|+...++.+-+-+ .           ++.-++..+  +.....  .....++..-..+
T Consensus         9 VvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a~~a   88 (348)
T KOG1384|consen    9 VVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDASRA   88 (348)
T ss_pred             EEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHHHHH
Confidence            89999999999999999999999875443322111 0           011111000  001111  1122333333345


Q ss_pred             HHHhcCCCCE-EEEcCCCCchHHHHHHHHHHH------------------HcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           67 VDRSVSKDNI-IIVDSLNSIKGYRYELWCLAR------------------AAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        67 v~~~L~~~~~-VIvD~~n~~k~~R~~l~~~ak------------------~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ++...++|.+ +|+-|+|++-..   +  +++                  +..+.+|++|++++..++-+|+.+|-.
T Consensus        89 ie~I~~rgk~PIv~GGs~~yi~a---l--~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD  160 (348)
T KOG1384|consen   89 IEEIHSRGKLPIVVGGSNSYLQA---L--LSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVD  160 (348)
T ss_pred             HHHHHhCCCCCEEeCCchhhHHH---H--hhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHH
Confidence            6666777765 555566654221   1  111                  112678999999999999999999975

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.73  E-value=0.00025  Score=64.45  Aligned_cols=25  Identities=40%  Similarity=0.484  Sum_probs=23.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|+|+|++|||||++|..|++.++.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~   25 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNA   25 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCC
Confidence            5899999999999999999999864

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.00046  Score=65.35  Aligned_cols=118  Identities=17%  Similarity=0.181  Sum_probs=81.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCC-CccccCCCch-h-----hHHHHHHHHHHHHHhc-
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHL-DRNQSYASMP-A-----EKNLRGVLRSEVDRSV-   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~-~~~~~y~~~~-~-----e~~~r~~l~~~v~~~L-   71 (303)
                      +|++.|+|++|||.++..|.+++++.++...+..+++..   ... .....|...+ .     ++..+..+.. +...+ 
T Consensus        30 ~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D-~~~~l~  108 (438)
T KOG0234|consen   30 VIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALND-LLHFLI  108 (438)
T ss_pred             EEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhh-HHHHhh
Confidence            799999999999999999999999876555555544321   000 0111232211 1     1122212222 22333 


Q ss_pred             -CCCCEEEEcCCCCchHHHHHHHHHHH-HcCCcEEEEEEecCHHHHHHHHHH
Q 047717           72 -SKDNIIIVDSLNSIKGYRYELWCLAR-AAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        72 -~~~~~VIvD~~n~~k~~R~~l~~~ak-~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                       ..|.++|.|++|..+..|..+...++ ..+..+..|...|.....+.+|..
T Consensus       109 ~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~  160 (438)
T KOG0234|consen  109 KENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIR  160 (438)
T ss_pred             ccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhh
Confidence             36899999999999999999999996 788888888888999988888886

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.72  E-value=0.00036  Score=67.18  Aligned_cols=36  Identities=28%  Similarity=0.374  Sum_probs=29.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +|+|+|++||||||.+..|+.++...  +..+.+++-+
T Consensus        97 vI~lvG~~GsGKTTtaakLA~~L~~~--g~kV~lV~~D  132 (437)
T PRK00771         97 TIMLVGLQGSGKTTTAAKLARYFKKK--GLKVGLVAAD  132 (437)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEecCC
Confidence            78999999999999999999998764  4566666544

>PRK05642 DNA replication initiation factor; Validated

Probab=97.71  E-value=0.00059  Score=60.36  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=25.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      .++|+|.+|+|||++++.++.++...  +..+++++
T Consensus        47 ~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~   80 (234)
T PRK05642         47 LIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLP   80 (234)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEee
Confidence            57899999999999999998876543  34455444

>PRK08727 hypothetical protein; Validated

Probab=97.70  E-value=0.0014  Score=57.82  Aligned_cols=33  Identities=18%  Similarity=0.338  Sum_probs=25.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRII   37 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~   37 (303)
                      .++|+|.+|+|||+++..++..+...  +..+.++
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~   75 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYL   75 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence            48999999999999999998876543  3344443

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=97.68  E-value=0.0001  Score=68.22  Aligned_cols=123  Identities=18%  Similarity=0.226  Sum_probs=82.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      +|++.|+|||||||+++..   +..    ....++..+.++...          .    .+. +-.+.|..+..||+|.+
T Consensus       271 iV~~vgfp~sGks~f~a~~---~~~----~~y~~vn~d~lg~~~----------~----C~~-~~~e~l~~~~sVvidnt  328 (422)
T KOG2134|consen  271 IVVAVGFPGSGKSTFAAKR---VVP----NGYKIVNADTLGTPQ----------N----CLL-ANAEALKHGKSVVIDNT  328 (422)
T ss_pred             EEEEEecCCCCcchhhhhh---ccc----CceeEeecccCCCch----------h----hHH-HHHHHhhcccEEeeCCC
Confidence            6899999999999998863   221    123444444433321          1    222 34467788899999999


Q ss_pred             CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCC
Q 047717           83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDR  147 (303)
Q Consensus        83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~  147 (303)
                      |+....|.-+...|.+.+.+...+.+.++.+.+.-.+..|.-...  ...++-++.-...+|+.|.-
T Consensus       329 ~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~~~~~~~dm~~~~~k~kf~~ptl  395 (422)
T KOG2134|consen  329 NPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDSVKDSGSDMVFNSEKSKFQKPTL  395 (422)
T ss_pred             CcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccccchhhccchhcccccceeehhhccccCchH
Confidence            999999988888889999999899999999998887777754211  01122233444445666553

>PRK06620 hypothetical protein; Validated

Probab=97.67  E-value=0.00097  Score=58.19  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .++|.|+||||||++++.++...+
T Consensus        46 ~l~l~Gp~G~GKThLl~a~~~~~~   69 (214)
T PRK06620         46 TLLIKGPSSSGKTYLTKIWQNLSN   69 (214)
T ss_pred             eEEEECCCCCCHHHHHHHHHhccC
Confidence            489999999999999999887664

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=97.67  E-value=0.0021  Score=56.64  Aligned_cols=144  Identities=13%  Similarity=0.122  Sum_probs=88.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~   81 (303)
                      ||+|.|..||||....+.|.+.++..+  ..|+.+..             ...+...+..+- .+-+.| ..|.+.|+|.
T Consensus        33 lIv~eG~DaAGKg~~I~~l~~~lDPRg--~~v~~~~~-------------pt~eE~~~p~lw-Rfw~~lP~~G~i~IF~r   96 (230)
T TIGR03707        33 VIVFEGRDAAGKGGTIKRITEHLNPRG--ARVVALPK-------------PSDRERTQWYFQ-RYVQHLPAAGEIVLFDR   96 (230)
T ss_pred             EEEEeCCCCCCchHHHHHHHHhcCCCe--eEEEeCCC-------------CCHHHHcChHHH-HHHHhCCCCCeEEEEeC
Confidence            799999999999999999999987652  33433321             111111121222 233444 4788999998


Q ss_pred             CCCchHH---------------HH----HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCH------HH
Q 047717           82 LNSIKGY---------------RY----ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDD------KI  134 (303)
Q Consensus        82 ~n~~k~~---------------R~----~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~------e~  134 (303)
                      ..|..-.               |+    .+.....+.|+....+|+..|.++-.+|+.+|..+....  +++      +.
T Consensus        97 SwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~  176 (230)
T TIGR03707        97 SWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDR  176 (230)
T ss_pred             chhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHh
Confidence            8764421               11    122223456888899999999999999999998654322  222      22


Q ss_pred             HHHHHHHhcCCCC-CCCCCCceeeeCCCC
Q 047717          135 FEDLVRRFEKPDR-RNRWDSPLFELCPYK  162 (303)
Q Consensus       135 ~~~l~~r~E~P~~-~~rwd~pl~~i~~~~  162 (303)
                      +++....||.--. .+.=.+|.++|++++
T Consensus       177 yd~y~~a~e~~l~~T~t~~APW~iI~a~d  205 (230)
T TIGR03707       177 WDDYSRAKDEMFARTDTPEAPWTVVRSDD  205 (230)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence            3444444442211 233346889998763

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.66  E-value=8.8e-05  Score=65.29  Aligned_cols=117  Identities=21%  Similarity=0.244  Sum_probs=67.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcccc-CCccEE------EecCCccCCCccccC------CCchhh-----------HH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESE-AKETVR------IIDEASFHLDRNQSY------ASMPAE-----------KN   58 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~------~~~~~~~~~~~~~~y------~~~~~e-----------~~   58 (303)
                      +|+|-|.||.||||+|..||.+|+-.. ++.+.+      +++.+-+..-..+.|      .+...+           ..
T Consensus        91 IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dqa~~  170 (299)
T COG2074          91 IILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASA  170 (299)
T ss_pred             EEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHHHhHH
Confidence            678889999999999999999997542 111110      011100000000111      111000           11


Q ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEec-CHHHHHHHHHHhhh
Q 047717           59 LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDL-EEDHCRKWNKERHE  124 (303)
Q Consensus        59 ~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~-~~e~~~~R~~~R~~  124 (303)
                      +-.-+...+.|++..|..+|++|....+++-.+-     ..+......++.+ +.+..+.|..+|..
T Consensus       171 V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~-----~~~~n~~~~~l~i~dee~Hr~RF~~R~~  232 (299)
T COG2074         171 VMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE-----ALGNNVFMFMLYIADEELHRERFYDRIR  232 (299)
T ss_pred             HHHHHHHHHHHHHhcCcceEEEeeeeccccccHh-----hhccceEEEEEEeCCHHHHHHHHHHHHH
Confidence            1113344677899999999999999888864321     1123344455544 56668899998875

>PF05729 NACHT: NACHT domain

Probab=97.64  E-value=0.00041  Score=56.90  Aligned_cols=26  Identities=42%  Similarity=0.580  Sum_probs=23.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +++|.|.||+||||+++.++..+...
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~   27 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEE   27 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhc
Confidence            78999999999999999999988764

>PF13173 AAA_14: AAA domain

Probab=97.64  E-value=0.00055  Score=54.55  Aligned_cols=98  Identities=14%  Similarity=0.121  Sum_probs=57.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVD   80 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD   80 (303)
                      ++++|.|+.|+||||+++++++.+..   ...++.++-+....     ..    ... .. +...+.+.. .....|++|
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~---~~~~~yi~~~~~~~-----~~----~~~-~~-~~~~~~~~~~~~~~~i~iD   68 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLP---PENILYINFDDPRD-----RR----LAD-PD-LLEYFLELIKPGKKYIFID   68 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcc---cccceeeccCCHHH-----HH----Hhh-hh-hHHHHHHhhccCCcEEEEe
Confidence            47999999999999999999987751   12233333111100     00    000 00 111222222 256889999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHH
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHC  115 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~  115 (303)
                      -..+.+.+...+..+....  +.+.|++..+....
T Consensus        69 Eiq~~~~~~~~lk~l~d~~--~~~~ii~tgS~~~~  101 (128)
T PF13173_consen   69 EIQYLPDWEDALKFLVDNG--PNIKIILTGSSSSL  101 (128)
T ss_pred             hhhhhccHHHHHHHHHHhc--cCceEEEEccchHH
Confidence            9888888777776665533  34566676665443

>PLN03025 replication factor C subunit; Provisional

Probab=97.63  E-value=0.0023  Score=59.26  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=23.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|-++|.|+||+||||+|..+++.+..
T Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l~~   60 (319)
T PLN03025         34 MPNLILSGPPGTGKTTSILALAHELLG   60 (319)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhc
Confidence            356789999999999999999998743

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=97.63  E-value=0.0002  Score=60.15  Aligned_cols=125  Identities=26%  Similarity=0.352  Sum_probs=67.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc-ccCCC---chhhHHHHHHHH--------HHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN-QSYAS---MPAEKNLRGVLR--------SEVDR   69 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~-~~y~~---~~~e~~~r~~l~--------~~v~~   69 (303)
                      .+|++.|.-.|||||.+..|.+.+...........+.+-...+..- ..|-.   ......++ .++        +.+..
T Consensus         6 ~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iH-LlFSAnRwe~~~~i~e   84 (208)
T KOG3327|consen    6 ALIVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIH-LLFSANRWEHVSLIKE   84 (208)
T ss_pred             cEEeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHH-HHhccchhhHHHHHHH
Confidence            4899999999999999999999885432111111111111111000 01100   01111222 232        34667


Q ss_pred             hcCCCCEEEEcCCCCc-------hHHHHHHHHHHHHcC--CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCH
Q 047717           70 SVSKDNIIIVDSLNSI-------KGYRYELWCLARAAG--IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDD  132 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~-------k~~R~~l~~~ak~~~--~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~  132 (303)
                      .+.+|..+|||-..|.       || -..-||.+-..|  .|..++|++++++.+.+    |+.-|.++|..
T Consensus        85 ~l~kg~~~ivDRY~~SGvAyS~AKg-l~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~----rggfG~Erye~  151 (208)
T KOG3327|consen   85 KLAKGTTLIVDRYSFSGVAYSAAKG-LDLDWCKQPDVGLPKPDLVLFLDVSPEDAAR----RGGFGEERYET  151 (208)
T ss_pred             HHhcCCeEEEecceecchhhhhhcC-CCcchhhCCccCCCCCCeEEEEeCCHHHHHH----hcCcchhHHHH
Confidence            7889999999974321       22 112244444433  47889999999998433    33323345554

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.63  E-value=0.00079  Score=53.30  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=26.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      .++|.|+||+||||+++.++..+...  +..++.++
T Consensus        21 ~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~   54 (151)
T cd00009          21 NLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLN   54 (151)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEe
Confidence            58999999999999999999988532  23444444

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.58  E-value=0.0003  Score=59.61  Aligned_cols=112  Identities=21%  Similarity=0.180  Sum_probs=54.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEE-------ecCCccCC-Cc----ccc--------CC----CchhhHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRI-------IDEASFHL-DR----NQS--------YA----SMPAEKN   58 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~-------~~~~~~~~-~~----~~~--------y~----~~~~e~~   58 (303)
                      +|.|.|..|||++++|+.|++.|+..+.+.+++.       ++++.+.. ..    ...        |.    +......
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK   80 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence            6999999999999999999999987643322111       11111000 00    000        00    0011122


Q ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           59 LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        59 ~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +...+...+.++..++..||+--..         .++.+... .+.-|++.+|.+...+|..+|..
T Consensus        81 ~~~~~~~~i~~la~~~~~Vi~GR~a---------~~il~~~~-~~l~V~i~A~~~~Rv~ri~~~~~  136 (179)
T PF13189_consen   81 IFRAQSEIIRELAAKGNCVIVGRCA---------NYILRDIP-NVLHVFIYAPLEFRVERIMEREG  136 (179)
T ss_dssp             HHHHHHHHHHHHHH---EEEESTTH---------HHHTTT-T-TEEEEEEEE-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCCEEEEecCH---------hhhhCCCC-CeEEEEEECCHHHHHHHHHHHcC
Confidence            2223333444444556555543211         12334333 57899999999999999998853

>PLN02748 tRNA dimethylallyltransferase

Probab=97.58  E-value=0.00038  Score=67.34  Aligned_cols=28  Identities=32%  Similarity=0.357  Sum_probs=25.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      ++|+|+|++||||||+|..|++.++...
T Consensus        23 ~~i~i~GptgsGKs~la~~la~~~~~ei   50 (468)
T PLN02748         23 KVVVVMGPTGSGKSKLAVDLASHFPVEI   50 (468)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCeeE
Confidence            4899999999999999999999987543

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.57  E-value=0.00014  Score=60.45  Aligned_cols=29  Identities=31%  Similarity=0.326  Sum_probs=26.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      |++|.|+|++||||||+++.|...+...+
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g   29 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPALSARG   29 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            89999999999999999999999997654

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.57  E-value=0.00013  Score=61.43  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=26.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      ||++.|+|++||||||+++.|...+...+
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g   34 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALCARG   34 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHhhcC
Confidence            58999999999999999999999987653

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.57  E-value=0.0028  Score=61.70  Aligned_cols=163  Identities=15%  Similarity=0.095  Sum_probs=96.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~   81 (303)
                      ||+|.|.-||||++..+.|.+.+...  +..|+.+....             .+...+..+- .+-+.| ..|.++|+|.
T Consensus        42 lIv~eG~DaaGKg~~I~~l~~~ldpr--g~~v~~~~~P~-------------~eE~~~~flw-Rfw~~lP~~G~I~IFdR  105 (493)
T TIGR03708        42 IILIEGWDGAGKGETINLLNEWMDPR--GIETHAFGRPS-------------DEERERPPMW-RFWRRLPPKGKIGIFFG  105 (493)
T ss_pred             EEEEeCCCCCChHHHHHHHHHHhCcC--ccEEEeCCCCC-------------HHHhcCcHHH-HHHHhCCCCCeEEEEcC
Confidence            79999999999999999999999876  34555443211             1111111222 233344 4788999998


Q ss_pred             CCCchH-------------H--HH----HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC--CH------HH
Q 047717           82 LNSIKG-------------Y--RY----ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY--DD------KI  134 (303)
Q Consensus        82 ~n~~k~-------------~--R~----~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~--~~------e~  134 (303)
                      ..|..-             +  |+    .+.....+.|+....+|+.++.++-.+|+.+|..+....+  ++      +.
T Consensus       106 SWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~~  185 (493)
T TIGR03708       106 SWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRVTPEDWKQLKV  185 (493)
T ss_pred             cccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCCCHHHHHHHHh
Confidence            776432             1  11    2222334678999999999999999999999986543222  22      22


Q ss_pred             HHHHHHHhcCCCC-CCCCCCceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717          135 FEDLVRRFEKPDR-RNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKK  182 (303)
Q Consensus       135 ~~~l~~r~E~P~~-~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~  182 (303)
                      +++....||.-.. .+.=.+|.++|++++ .--..-..+.-|++.|-+.
T Consensus       186 wd~Y~~a~e~ml~~T~t~~APW~vI~add-K~~arl~v~~~il~~L~~~  233 (493)
T TIGR03708       186 YDRYRKLAERMLRYTSTPYAPWTVVEGED-DRYRSLTVGRTLLAAIRAR  233 (493)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEEcCCC-HHHHHHHHHHHHHHHHHHH
Confidence            3444444433222 222346889998753 2222233344455555443

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.56  E-value=0.00077  Score=62.37  Aligned_cols=27  Identities=33%  Similarity=0.514  Sum_probs=23.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |.++|.|+||+||||+|+.+++.+...
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l~~~   63 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALARELYGD   63 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            568999999999999999999988643

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.54  E-value=0.0013  Score=62.94  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS   41 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~   41 (303)
                      +|+|+|++||||||.+..|+.++...  +..|.+++-+.
T Consensus       102 vi~lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~D~  138 (429)
T TIGR01425       102 VIMFVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCADT  138 (429)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCcc
Confidence            79999999999999999999988654  45676666543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.52  E-value=0.0006  Score=55.51  Aligned_cols=35  Identities=31%  Similarity=0.367  Sum_probs=27.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +++|+|.||+||||++..++..+...  +..+++++.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~   35 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDI   35 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEEC
Confidence            47899999999999999999887543  344555553

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00019  Score=65.35  Aligned_cols=26  Identities=35%  Similarity=0.575  Sum_probs=24.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .||++.||||.|||++||+|+++|.-
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSI  203 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSI  203 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhhee
Confidence            48999999999999999999999864

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=97.49  E-value=0.0047  Score=55.47  Aligned_cols=144  Identities=11%  Similarity=0.176  Sum_probs=88.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~   81 (303)
                      ||+|.|..||||....+.|.+.+...+  ..|+.+...             ..+...+..+- .+-+.| ..|.+.|+|.
T Consensus        58 lIv~eG~DaAGKG~~I~~l~~~lDPRg--~~V~s~~~P-------------t~eE~~~p~lW-Rfw~~lP~~G~i~IF~R  121 (264)
T TIGR03709        58 LLVLQAMDAAGKDGTIRHVMSGVNPQG--CQVTSFKAP-------------SAEELDHDFLW-RIHKALPERGEIGIFNR  121 (264)
T ss_pred             EEEEECCCCCCchHHHHHHHHhcCCCe--eEEEeCCCC-------------CHHHHcCchHH-HHHHhCCCCCeEEEEcC
Confidence            799999999999999999999987652  334433211             11111121222 233444 4789999998


Q ss_pred             CCCchH-------------HHH------HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCH------HH
Q 047717           82 LNSIKG-------------YRY------ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDD------KI  134 (303)
Q Consensus        82 ~n~~k~-------------~R~------~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~------e~  134 (303)
                      ..|..-             ++.      .+.....+.|+..+.+|+.++.++-.+|+.+|..+....  +++      +.
T Consensus       122 SWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~  201 (264)
T TIGR03709       122 SHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKERAY  201 (264)
T ss_pred             ccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHHHh
Confidence            877432             111      122223456888999999999999999999997643322  222      22


Q ss_pred             HHHHHHHhcCCCC-CCCCCCceeeeCCCC
Q 047717          135 FEDLVRRFEKPDR-RNRWDSPLFELCPYK  162 (303)
Q Consensus       135 ~~~l~~r~E~P~~-~~rwd~pl~~i~~~~  162 (303)
                      +++....||.--. .+.=.+|.++|++++
T Consensus       202 yd~y~~a~e~~l~~T~t~~APW~iI~a~d  230 (264)
T TIGR03709       202 WDDYMEAYEDALTATSTKHAPWYVVPADD  230 (264)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence            3334343333222 233346889998763

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.48  E-value=0.0017  Score=58.75  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=30.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|+++|+||+||||.+..|+..+...  +..|.+++-+
T Consensus        73 ~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D  109 (272)
T TIGR00064        73 NVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD  109 (272)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence            478899999999999999999988654  4567776644

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.48  E-value=0.0013  Score=61.15  Aligned_cols=37  Identities=30%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|+|+|+|||||||.+..|+..+...  +..+.+++.+
T Consensus       141 ~vi~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~D  177 (336)
T PRK14974        141 VVIVFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGD  177 (336)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCC
Confidence            479999999999999999999888654  3455555533

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.47  E-value=0.00061  Score=58.64  Aligned_cols=25  Identities=24%  Similarity=0.522  Sum_probs=22.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|+|+|++||||||+.+.|...+..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            7999999999999999999888764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=97.47  E-value=0.0013  Score=55.86  Aligned_cols=60  Identities=18%  Similarity=0.133  Sum_probs=43.3

Q ss_pred             CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCC----CceeeeCC
Q 047717          101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWD----SPLFELCP  160 (303)
Q Consensus       101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd----~pl~~i~~  160 (303)
                      ....+||+.+++++|.+|+..|.+..+..++-+.++++-..-|.-.-+.+++    .|.++++.
T Consensus       153 ~~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDa  216 (244)
T KOG4235|consen  153 SLDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDA  216 (244)
T ss_pred             ccceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEec
Confidence            3567999999999999999999887666788888888776655422122222    47777763

>PRK13768 GTPase; Provisional

Probab=97.46  E-value=0.00053  Score=61.41  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=29.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      |.+|++.|++||||||++..++..+...  +.++.+++
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~--g~~v~~i~   37 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQ--GYDVAIVN   37 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhc--CCceEEEE
Confidence            4689999999999999999999998654  45666655

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=97.45  E-value=0.0017  Score=57.23  Aligned_cols=138  Identities=20%  Similarity=0.165  Sum_probs=76.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~   81 (303)
                      ||+|.|..||||+.+.+.|.+.+...+  ..|+.+...             ..+...+..+- .+-+.| ..|.+.|+|.
T Consensus        33 lIl~eG~d~sGKg~~I~~l~~~lDPR~--~~v~~~~~p-------------t~eE~~~p~lw-Rfw~~lP~~G~I~if~r   96 (228)
T PF03976_consen   33 LILFEGWDASGKGGTINRLIEWLDPRG--FRVHAFGKP-------------TDEELRRPFLW-RFWRALPARGQIGIFDR   96 (228)
T ss_dssp             EEEEEESTTSSHHHHHHHHHCCS-GGG--EEEEE-SS---------------HHHHTS-TTH-HHHTTS--TT-EEEEES
T ss_pred             EEEEeccccCCchHHHHHHHHhCCCCe--eEEEeCCCC-------------ChhHcCCCcHH-HHHHhCCCCCEEEEEec
Confidence            799999999999999999988887653  344443311             11111111111 222344 4788999998


Q ss_pred             CCCchHH-------------HH------HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCH--------
Q 047717           82 LNSIKGY-------------RY------ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDD--------  132 (303)
Q Consensus        82 ~n~~k~~-------------R~------~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~--------  132 (303)
                      ..|..-.             ..      .+.....+.|+....+|+..+.++-.+|+.+|..+....  +++        
T Consensus        97 SWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wkv~~~D~~~~~~  176 (228)
T PF03976_consen   97 SWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWKVSPEDWEQRKH  176 (228)
T ss_dssp             -GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG--HHHHHHHCC
T ss_pred             chhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccccCCHHHHHHHhh
Confidence            8764321             11      122223456888889999999999999999997753221  122        


Q ss_pred             -----HHHHHHHHHhcCCCCCCCCCCceeeeCCCC
Q 047717          133 -----KIFEDLVRRFEKPDRRNRWDSPLFELCPYK  162 (303)
Q Consensus       133 -----e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~  162 (303)
                           ..+++|..+=..      =.+|..+|++++
T Consensus       177 yd~y~~a~~~~l~~T~t------~~APW~iI~a~d  205 (228)
T PF03976_consen  177 YDRYQKAYEEMLERTDT------PYAPWHIIPADD  205 (228)
T ss_dssp             HHHHHHHHHHHHHHH-B------SSS-EEEEE-SS
T ss_pred             HHHHHHHHHHHHhccCC------CCCCeEEEeCCC
Confidence                 333444443332      346889998763

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=97.45  E-value=0.0017  Score=57.54  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=55.3

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHh-cC-CCCEEE
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRS-VS-KDNIII   78 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~-L~-~~~~VI   78 (303)
                      |.+|+|+|.+|||||+-.+.|.+ ++       ..++|.  +..            ..+- .+...+... .+ ..--|+
T Consensus         1 m~lvIVTGlSGAGKsvAl~~lED-lG-------yycvDN--LPp------------~Llp-~~~~~~~~~~~~~~kvAv~   57 (286)
T COG1660           1 MRLVIVTGLSGAGKSVALRVLED-LG-------YYCVDN--LPP------------QLLP-KLADLMLTLESRITKVAVV   57 (286)
T ss_pred             CcEEEEecCCCCcHHHHHHHHHh-cC-------eeeecC--CCH------------HHHH-HHHHHHhhcccCCceEEEE
Confidence            88999999999999998887643 22       234441  110            0000 111111110 11 223477


Q ss_pred             EcCCCCchHHHHHHHH---HHHHc-CCcEEEEEEecCHHHHHHHHHH
Q 047717           79 VDSLNSIKGYRYELWC---LARAA-GIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~---~ak~~-~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      +|--+.  .+...+..   ..+.. +....++|++++.+++.+|-.+
T Consensus        58 iDiRs~--~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~e  102 (286)
T COG1660          58 IDVRSR--EFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSE  102 (286)
T ss_pred             Eecccc--hhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhh
Confidence            887543  33333333   33444 3568899999999999999764

>PRK04296 thymidine kinase; Provisional

Probab=97.45  E-value=0.001  Score=56.89  Aligned_cols=105  Identities=16%  Similarity=0.083  Sum_probs=53.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC---CccCC---CccccCCCch-hhHHHHHHHHHHHHHhcCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE---ASFHL---DRNQSYASMP-AEKNLRGVLRSEVDRSVSKD   74 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~---~~~~~---~~~~~y~~~~-~e~~~r~~l~~~v~~~L~~~   74 (303)
                      .+++++|+|||||||.+..++..+...  +..++++..   .....   ...-...-.. ...... .+...+...-..-
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~~   79 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDT-DIFELIEEEGEKI   79 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEeccccccccCCcEecCCCCcccceEeCChH-HHHHHHHhhCCCC
Confidence            488999999999999999998887543  345555421   11110   0000000000 000011 1111222211133


Q ss_pred             CEEEEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEe
Q 047717           75 NIIIVDSLNSI-KGYRYELWCLARAAGIRYCVLYCD  109 (303)
Q Consensus        75 ~~VIvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~  109 (303)
                      .+||+|...++ ...-.++...++..+..+.+.-++
T Consensus        80 dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~  115 (190)
T PRK04296         80 DCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD  115 (190)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence            68999997665 333445555656677755554444

>PRK12377 putative replication protein; Provisional

Probab=97.44  E-value=0.00067  Score=60.52  Aligned_cols=83  Identities=17%  Similarity=0.270  Sum_probs=48.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      -++|.|.||+|||++|.+|+..+...  +..++++....+...-...|.+...+        ..+.+.+.+-.++|+|..
T Consensus       103 ~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~~l~~~l~~~~~~~~~~--------~~~l~~l~~~dLLiIDDl  172 (248)
T PRK12377        103 NFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVPDVMSRLHESYDNGQSG--------EKFLQELCKVDLLVLDEI  172 (248)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHHHHHHHHHHHHhccchH--------HHHHHHhcCCCEEEEcCC
Confidence            47999999999999999999998754  34555544221110001112211111        123345567899999998


Q ss_pred             CCc---hHHHHHHHHH
Q 047717           83 NSI---KGYRYELWCL   95 (303)
Q Consensus        83 n~~---k~~R~~l~~~   95 (303)
                      ...   +.....++.+
T Consensus       173 g~~~~s~~~~~~l~~i  188 (248)
T PRK12377        173 GIQRETKNEQVVLNQI  188 (248)
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            543   3334455554

>PLN02840 tRNA dimethylallyltransferase

Probab=97.44  E-value=0.00029  Score=67.08  Aligned_cols=27  Identities=41%  Similarity=0.480  Sum_probs=24.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      ++|+|+|++||||||+|..|++.++..
T Consensus        22 ~vi~I~GptgsGKTtla~~La~~~~~~   48 (421)
T PLN02840         22 KVIVISGPTGAGKSRLALELAKRLNGE   48 (421)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHCCCC
Confidence            589999999999999999999999754

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.40  E-value=0.00081  Score=63.02  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=22.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -.++-|+||+||||+|+.|+..++..
T Consensus        50 SmIl~GPPG~GKTTlA~liA~~~~~~   75 (436)
T COG2256          50 SMILWGPPGTGKTTLARLIAGTTNAA   75 (436)
T ss_pred             eeEEECCCCCCHHHHHHHHHHhhCCc
Confidence            35789999999999999999988653

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.40  E-value=0.0011  Score=56.97  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=28.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|+|.|++|+||||.+.+|+.++...  +..+-++.-+
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D   38 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISAD   38 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEES
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCC
Confidence            479999999999999999999999765  5555555433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01394 radB RadB

Probab=97.39  E-value=0.0019  Score=56.17  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=27.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      ++.|+|.|||||||+|.+++......  +..+++++-
T Consensus        21 i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~   55 (218)
T cd01394          21 VTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDT   55 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEC
Confidence            78999999999999999999877443  345666653

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.0019  Score=61.14  Aligned_cols=106  Identities=18%  Similarity=0.240  Sum_probs=59.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC------------CccccCCCchhhHHHHHHHHHHHHHh
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL------------DRNQSYASMPAEKNLRGVLRSEVDRS   70 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~------------~~~~~y~~~~~e~~~r~~l~~~v~~~   70 (303)
                      +|+++|+-||||||.|..||.+|...  +..+.++.-+.+..            ..-.+|.......... ..+.+++++
T Consensus       102 vImmvGLQGsGKTTt~~KLA~~lkk~--~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~-Iak~al~~a  178 (451)
T COG0541         102 VILMVGLQGSGKTTTAGKLAKYLKKK--GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVE-IAKAALEKA  178 (451)
T ss_pred             EEEEEeccCCChHhHHHHHHHHHHHc--CCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHH-HHHHHHHHH
Confidence            79999999999999999999999874  55665555332210            0112444321111111 233344444


Q ss_pred             cC-CCCEEEEcCCCC---chHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717           71 VS-KDNIIIVDSLNS---IKGYRYELWCLARAAGIRYCVLYCDLE  111 (303)
Q Consensus        71 L~-~~~~VIvD~~n~---~k~~R~~l~~~ak~~~~~~~vI~l~~~  111 (303)
                      -. ..++||||..-.   -...-.|+..+.+.....-.+..+|+.
T Consensus       179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam  223 (451)
T COG0541         179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM  223 (451)
T ss_pred             HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence            33 348999997543   234455666654444433334445654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.39  E-value=0.00012  Score=57.38  Aligned_cols=37  Identities=38%  Similarity=0.495  Sum_probs=28.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      ..++|.|+|||||||+++.|+..+....  ..++.++..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~   39 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGE   39 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCE
Confidence            4689999999999999999999887642  245555543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.38  E-value=0.0039  Score=54.28  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .|+|+|.||+||||+|+.++.....
T Consensus        40 ~lll~G~~G~GKT~la~~~~~~~~~   64 (226)
T TIGR03420        40 FLYLWGESGSGKSHLLQAACAAAEE   64 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999988754

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.35  E-value=0.0054  Score=59.41  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=26.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      ++|.|+||+|||++++.++..+...  +..+++++
T Consensus       144 l~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~  176 (445)
T PRK12422        144 IYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR  176 (445)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee
Confidence            6899999999999999999987643  34555554

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.35  E-value=0.00016  Score=67.56  Aligned_cols=26  Identities=31%  Similarity=0.571  Sum_probs=24.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+++|.|+|||||||+|+.|+..++.
T Consensus        79 ~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       79 QILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            47899999999999999999999975

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.32  E-value=0.0061  Score=59.00  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=27.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      ++|.|+||+|||++++.++.++...+.+..+++++
T Consensus       133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~  167 (440)
T PRK14088        133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            79999999999999999999876543344566554

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.31  E-value=0.00045  Score=56.17  Aligned_cols=28  Identities=25%  Similarity=0.375  Sum_probs=25.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      |+|.++|+.+|||||+++.|..++...+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g   28 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRG   28 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence            7899999999999999999999998664

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.30  E-value=0.00044  Score=62.51  Aligned_cols=94  Identities=15%  Similarity=0.205  Sum_probs=54.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-ccCCCccccCCCchh---hHHH---HHHHHHHHHHhcCCCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-SFHLDRNQSYASMPA---EKNL---RGVLRSEVDRSVSKDN   75 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-~~~~~~~~~y~~~~~---e~~~---r~~l~~~v~~~L~~~~   75 (303)
                      ||+++|+.||||||-...+.++++... ...++.+.|. .+      .|.+...   .+.+   ...+..+++.+|+.+.
T Consensus       127 LILVTGpTGSGKSTTlAamId~iN~~~-~~HIlTIEDPIE~------vh~skkslI~QREvG~dT~sF~~aLraALReDP  199 (353)
T COG2805         127 LILVTGPTGSGKSTTLAAMIDYINKHK-AKHILTIEDPIEY------VHESKKSLINQREVGRDTLSFANALRAALREDP  199 (353)
T ss_pred             eEEEeCCCCCcHHHHHHHHHHHHhccC-CcceEEecCchHh------hhcchHhhhhHHHhcccHHHHHHHHHHHhhcCC
Confidence            899999999999999999999998752 2233334432 11      1111111   1110   1255667778888888


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcCCcEEEE
Q 047717           76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVL  106 (303)
Q Consensus        76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI  106 (303)
                      .||+=|-..-.   +-+..+..++.+.+.|+
T Consensus       200 DVIlvGEmRD~---ETi~~ALtAAETGHLV~  227 (353)
T COG2805         200 DVILVGEMRDL---ETIRLALTAAETGHLVF  227 (353)
T ss_pred             CEEEEeccccH---HHHHHHHHHHhcCCEEE
Confidence            88887733221   22233334445555444

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.29  E-value=0.0023  Score=56.08  Aligned_cols=36  Identities=14%  Similarity=0.260  Sum_probs=27.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -++|.|.+|+|||.+.++++.++.....+..+++++
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~   71 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS   71 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence            368999999999999999998876543455566654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.29  E-value=0.002  Score=62.95  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=23.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      =|+|.|+||+|||.+|+.++..++..
T Consensus       261 GILL~GPpGTGKTllAkaiA~e~~~~  286 (489)
T CHL00195        261 GLLLVGIQGTGKSLTAKAIANDWQLP  286 (489)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            38899999999999999999998653

>PRK05973 replicative DNA helicase; Provisional

Probab=97.29  E-value=0.0013  Score=58.24  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=26.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.||+|||++|-+++...-..  +..+++++
T Consensus        66 l~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfS   99 (237)
T PRK05973         66 LVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFT   99 (237)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEE
Confidence            78999999999999999988765332  44565554

>PHA03134 thymidine kinase; Provisional

Probab=97.28  E-value=0.0067  Score=56.03  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=33.3

Q ss_pred             EEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717          103 YCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus       103 ~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      ..+|+++.+.+++.+|+.+|++.++ ..+.+.+..+...|..
T Consensus       165 ~niVl~~l~~~e~~~Rl~~R~R~gE-~id~~yL~~l~n~Y~~  205 (340)
T PHA03134        165 GNLVVTTLNPDEHLRRLRARARIGE-QIDAKLIAALRNVYAM  205 (340)
T ss_pred             CeEEEEeCCHHHHHHHHHHcCCCcc-ccCHHHHHHHHHHHHH
Confidence            5789999999999999999999765 4777777777666553

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.28  E-value=0.0031  Score=61.93  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ++|.|+||+|||++|+.|+..++.
T Consensus        91 iLL~GppGtGKT~la~alA~~~~~  114 (495)
T TIGR01241        91 VLLVGPPGTGKTLLAKAVAGEAGV  114 (495)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC
Confidence            789999999999999999988754

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.28  E-value=0.0041  Score=59.44  Aligned_cols=36  Identities=17%  Similarity=0.272  Sum_probs=27.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -++|.|.||+|||++++.++..+.....+..+++++
T Consensus       138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~  173 (405)
T TIGR00362       138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS  173 (405)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            478999999999999999999886543234555544

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.28  E-value=0.00017  Score=59.88  Aligned_cols=21  Identities=48%  Similarity=0.667  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~   24 (303)
                      |+|+|.||+||||+++.|+++
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            899999999999999999988

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.27  E-value=0.0091  Score=54.70  Aligned_cols=26  Identities=35%  Similarity=0.543  Sum_probs=23.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |-++|+|+||+||||+++.+++.+..
T Consensus        39 ~~~ll~G~~G~GKt~~~~~l~~~l~~   64 (319)
T PRK00440         39 PHLLFAGPPGTGKTTAALALARELYG   64 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcC
Confidence            45799999999999999999998754

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.27  E-value=0.0025  Score=61.83  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -++|.|+||+|||++++.++..+...+.+..+++++
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~  185 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT  185 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            478999999999999999999886543344555544

>TIGR00959 ffh signal recognition particle protein

Probab=97.27  E-value=0.0024  Score=61.39  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=28.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +|+++|+|||||||.|..|+.++... .+..+.+++-+
T Consensus       101 vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D  137 (428)
T TIGR00959       101 VILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACD  137 (428)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEecc
Confidence            79999999999999999999987421 14556666544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.26  E-value=0.00025  Score=62.96  Aligned_cols=30  Identities=30%  Similarity=0.416  Sum_probs=22.9

Q ss_pred             EEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717            6 ICGQPSSGKSLAATCLAEALKESEAKETVRII   37 (303)
Q Consensus         6 l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~   37 (303)
                      +.|+|||||||+++.+.+.+...+  .++.++
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~v   30 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIV   30 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT---S-EEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcc--CCceEE
Confidence            589999999999999999997753  444443

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.26  E-value=0.0024  Score=61.48  Aligned_cols=37  Identities=30%  Similarity=0.450  Sum_probs=29.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +|+++|++||||||.+..|+.++... .+..|.+++-+
T Consensus       102 vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D  138 (433)
T PRK10867        102 VIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAAD  138 (433)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEcc
Confidence            79999999999999999999988654 13456665544

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.26  E-value=0.0013  Score=56.59  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=28.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -++++|+.||||||++..+.++....+....++.+|
T Consensus         5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLD   40 (273)
T KOG1534|consen    5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLD   40 (273)
T ss_pred             eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecC
Confidence            478999999999999999999887654344444444

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=97.25  E-value=0.00047  Score=60.47  Aligned_cols=112  Identities=15%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCCc---hhhHHHHHHHHHHHHHhcC---C
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYASM---PAEKNLRGVLRSEVDRSVS---K   73 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~~---~~e~~~r~~l~~~v~~~L~---~   73 (303)
                      .++.|.|||||+|+|..|++.+...++...-++.+..    .++.. ...+-+.   -.+..    +...+...|.   .
T Consensus        18 ~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~-~~~~~~~g~lvpDei----v~~~l~~~l~~~~~   92 (235)
T KOG3078|consen   18 AVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKE-AKEAIDKGKLVPDEV----VVRLLEKRLENPRC   92 (235)
T ss_pred             EEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHH-HHHHHHhcCcCcHHH----HHHHHHhhcccccc
Confidence            6899999999999999999999865322111111100    00000 0000000   00111    1112333333   3


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717           74 DNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ...+|+|+....-.+-.++    +..+ ....+|.+.+|.+.+.+|+..|.-
T Consensus        93 ~~~~ildg~Prt~~qa~~l----~~~~~~~d~Vi~l~vp~~~L~~ri~~r~i  140 (235)
T KOG3078|consen   93 QKGFILDGFPRTVQQAEEL----LDRIAQIDLVINLKVPEEVLVDRITGRRI  140 (235)
T ss_pred             ccccccCCCCcchHHHHHH----HHccCCcceEEEecCCHHHHHHHHhcccc
Confidence            4789999977665544332    3322 346699999999999999998854

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=97.24  E-value=0.00039  Score=62.92  Aligned_cols=29  Identities=24%  Similarity=0.386  Sum_probs=27.4

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      |++|.|+|.+||||||++..|...|...+
T Consensus         1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G   29 (274)
T PRK14493          1 MKVLSIVGYKATGKTTLVERLVDRLSGRG   29 (274)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            89999999999999999999999998764

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.23  E-value=0.00026  Score=61.78  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=22.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +-+++.|+||.||||+|+.|++.++..
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~   77 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVN   77 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCC
Confidence            458999999999999999999998753

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.23  E-value=0.0052  Score=56.52  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      +++++|+||+||||+|+.+++.++
T Consensus        45 ~lll~G~~G~GKT~la~~l~~~~~   68 (316)
T PHA02544         45 MLLHSPSPGTGKTTVAKALCNEVG   68 (316)
T ss_pred             EEEeeCcCCCCHHHHHHHHHHHhC
Confidence            567799999999999999998874

>PF13245 AAA_19: Part of AAA domain

Probab=97.23  E-value=0.00033  Score=50.79  Aligned_cols=24  Identities=38%  Similarity=0.621  Sum_probs=17.3

Q ss_pred             EEEEEEccCCCCHHHHH-HHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAA-TCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA-~~La~~l   25 (303)
                      ++.+|.|+||||||+.+ +.++..+
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            46788999999999554 4444444

>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2

Probab=97.20  E-value=0.00098  Score=54.99  Aligned_cols=106  Identities=23%  Similarity=0.330  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-----cEEEEEEecCHHH-HHHHHHHhhhcCCCCC
Q 047717           57 KNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGI-----RYCVLYCDLEEDH-CRKWNKERHEKGEAAY  130 (303)
Q Consensus        57 ~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-----~~~vI~l~~~~e~-~~~R~~~R~~~~~~~~  130 (303)
                      ..+|..+.. ..+.+.....||+||               +..|+     ..+.||+++++++ +.+|..+....+....
T Consensus        46 ~~VR~~l~~-~Qr~~a~~~~vV~eG---------------RDigTvVfPdA~~KifLtAs~e~RA~RR~~e~~~~g~~~~  109 (157)
T PF02224_consen   46 PEVREALVE-IQREIAKKGGVVMEG---------------RDIGTVVFPDADLKIFLTASPEVRARRRYKELQEKGKKVS  109 (157)
T ss_dssp             HHHHHHHHH-HHHHHHTTSCEEEEE---------------SSCCCCCCTT-SEEEEEE--HHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHH-HHHHHHHcCCeEEec---------------CCCceEEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCC
Confidence            456655653 344455577899999               34444     2368999999998 6677776655432223


Q ss_pred             CHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          131 DDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       131 ~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      -++++.++..|.+.  +++|-.+||.....+ ..++++...++++++.|++
T Consensus       110 ~e~v~~~i~~RD~~--D~~R~~aPL~~a~DA-i~IDts~lti~evv~~il~  157 (157)
T PF02224_consen  110 YEEVLEDIKERDER--DSNREVAPLKKAEDA-IVIDTSNLTIEEVVEKILE  157 (157)
T ss_dssp             HHHHHHHHHHHHHH--HHCTSSS-SS--TTS-EEEETTTS-HHHHHHHHHH
T ss_pred             HHHHHHHHHhhChh--hccCccCCCccCCCe-EEEECCCCCHHHHHHHHhC
Confidence            36889999999886  578888898766554 5566778889999988864

7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.20  E-value=0.0042  Score=60.56  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=23.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+|+.+++.+..
T Consensus        38 ~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         38 AYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4799999999999999999999875

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.20  E-value=0.0047  Score=58.05  Aligned_cols=110  Identities=20%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCc--------------------cccC----CCc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDR--------------------NQSY----ASM   53 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~--------------------~~~y----~~~   53 (303)
                      +.++++|+-.|||||++..|+.++...+  .++.++|.+    ++....                    ...|    ...
T Consensus        74 ~~vmvvG~vDSGKSTLt~~LaN~~l~rG--~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP~  151 (398)
T COG1341          74 GVVMVVGPVDSGKSTLTTYLANKLLARG--RKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISPQ  151 (398)
T ss_pred             cEEEEECCcCcCHHHHHHHHHHHHhhcC--ceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccCCC
Confidence            5799999999999999999999998753  345555532    111000                    0001    111


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHH-HcCCcEEEEEEecCHH
Q 047717           54 PAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLAR-AAGIRYCVLYCDLEED  113 (303)
Q Consensus        54 ~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak-~~~~~~~vI~l~~~~e  113 (303)
                      ..+..+-......+..+.+...++|+|.+-.++|++-.-+..++ ..--|..+|+++...+
T Consensus       152 ~~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~elk~~li~~ikP~~Ii~l~~~~~  212 (398)
T COG1341         152 GFPGRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLELKRALIDAIKPDLIIALERANE  212 (398)
T ss_pred             CChHHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHHHHHHHhhcCCCEEEEeccccc
Confidence            12222222333355555556688999999999995443333332 2233567888865443

>PRK06526 transposase; Provisional

Probab=97.19  E-value=0.0011  Score=59.35  Aligned_cols=104  Identities=16%  Similarity=0.161  Sum_probs=53.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      -++|+|+||+|||++|..|+..+-..  +..+.+.....+.-.-...+.        .+.+...+. .+.+-.++|+|..
T Consensus       100 nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f~t~~~l~~~l~~~~~--------~~~~~~~l~-~l~~~dlLIIDD~  168 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFATAAQWVARLAAAHH--------AGRLQAELV-KLGRYPLLIVDEV  168 (254)
T ss_pred             eEEEEeCCCCchHHHHHHHHHHHHHC--CCchhhhhHHHHHHHHHHHHh--------cCcHHHHHH-HhccCCEEEEccc
Confidence            47999999999999999998776443  334433221111000000000        001111222 2345578999998


Q ss_pred             CCc---hHHHHHHHHHHH-HcCCcEEEEEEecCHHHHHH
Q 047717           83 NSI---KGYRYELWCLAR-AAGIRYCVLYCDLEEDHCRK  117 (303)
Q Consensus        83 n~~---k~~R~~l~~~ak-~~~~~~~vI~l~~~~e~~~~  117 (303)
                      .+.   +.....++.+.. .+.....+|-...+.+...+
T Consensus       169 g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~  207 (254)
T PRK06526        169 GYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGE  207 (254)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHH
Confidence            765   334445666442 22222334445556555443

>PRK08116 hypothetical protein; Validated

Probab=97.19  E-value=0.0018  Score=58.47  Aligned_cols=33  Identities=27%  Similarity=0.546  Sum_probs=26.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      ++|.|.||+|||++|..++.++...  +..+++++
T Consensus       117 l~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~  149 (268)
T PRK08116        117 LLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN  149 (268)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence            7899999999999999999998654  34555554

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.17  E-value=0.0027  Score=62.24  Aligned_cols=24  Identities=33%  Similarity=0.704  Sum_probs=22.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|.|+||+|||++|+.++..+..
T Consensus       219 ILLyGPPGTGKT~LAKAlA~eL~~  242 (512)
T TIGR03689       219 VLLYGPPGCGKTLIAKAVANSLAQ  242 (512)
T ss_pred             eEEECCCCCcHHHHHHHHHHhhcc
Confidence            789999999999999999998864

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.16  E-value=0.00051  Score=58.05  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=20.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      |+++|+|+.||||||+.+.|.+
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~   22 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLK   22 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            8999999999999999999987

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.15  E-value=0.0052  Score=57.99  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=26.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +|+|+|++|+||||++..|+..+-...-...+.++..+
T Consensus       139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D  176 (374)
T PRK14722        139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTD  176 (374)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence            68999999999999999999876322101345454433

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.15  E-value=0.0048  Score=59.92  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=23.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|+||+||||+|+.|++.++..
T Consensus        42 a~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         42 AYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            58999999999999999999999763

>PRK13695 putative NTPase; Provisional

Probab=97.15  E-value=0.0065  Score=50.93  Aligned_cols=24  Identities=42%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .|+|+|.|||||||+++.+...+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999887764

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.15  E-value=0.00054  Score=60.91  Aligned_cols=38  Identities=32%  Similarity=0.453  Sum_probs=28.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .+|-|+|+||+||||+...|..++...+....|+.+|.
T Consensus        30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP   67 (266)
T PF03308_consen   30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP   67 (266)
T ss_dssp             EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G
T ss_pred             eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC
Confidence            47899999999999999999999987654455666664

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PHA03135 thymidine kinase; Provisional

Probab=97.14  E-value=0.0079  Score=55.63  Aligned_cols=40  Identities=18%  Similarity=0.196  Sum_probs=27.2

Q ss_pred             EEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717          103 YCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE  143 (303)
Q Consensus       103 ~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E  143 (303)
                      ..+|+...+.+++.+|+.+|++.++ ..+.+.+..+...|.
T Consensus       161 niVl~~L~~~~E~~rRl~~R~R~gE-~~d~~yL~aL~n~Y~  200 (343)
T PHA03135        161 NLVITILPDEKEHVNRLSSRNRPGE-TTDRNMLRALNAVYS  200 (343)
T ss_pred             eEEEEECCCHHHHHHHHHHcCCCcc-ccCHHHHHHHHHHHH
Confidence            4445444468899999999998764 456666666655543

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.14  E-value=0.0004  Score=55.89  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=22.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|.|+||+|||++++.|++.++.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~   25 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGR   25 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhc
Confidence            789999999999999999999964

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.12  E-value=0.00054  Score=63.61  Aligned_cols=38  Identities=34%  Similarity=0.320  Sum_probs=29.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .+|.|+|+|||||||++..|...+...+....++.+|.
T Consensus        57 ~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp   94 (332)
T PRK09435         57 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP   94 (332)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            37999999999999999999999976543333444443

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.12  E-value=0.0049  Score=57.42  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=27.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .|+|+|.+||||||+.+.|..++...   ..++.++|
T Consensus       162 nili~G~tgSGKTTll~aL~~~ip~~---~ri~tiEd  195 (332)
T PRK13900        162 NIIISGGTSTGKTTFTNAALREIPAI---ERLITVED  195 (332)
T ss_pred             cEEEECCCCCCHHHHHHHHHhhCCCC---CeEEEecC
Confidence            58999999999999999999888642   34555544

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.12  E-value=0.0041  Score=52.88  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|++||||||+.+.|...+..
T Consensus        27 ~i~I~G~tGSGKTTll~aL~~~i~~   51 (186)
T cd01130          27 NILISGGTGSGKTTLLNALLAFIPP   51 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcCC
Confidence            6899999999999999999887753

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.12  E-value=0.0052  Score=61.33  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=27.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      ++|.|.+|+|||.|++.++.++.....+..+++++
T Consensus       317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit  351 (617)
T PRK14086        317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS  351 (617)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence            78999999999999999999875432244555554

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.11  E-value=0.0036  Score=52.61  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ++-|+|.|.+|+||||+.+.|...
T Consensus        18 ~~~i~ivG~~~~GKStlin~l~~~   41 (179)
T TIGR03598        18 GPEIAFAGRSNVGKSSLINALTNR   41 (179)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            357999999999999999998754

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.11  E-value=0.00058  Score=60.12  Aligned_cols=29  Identities=31%  Similarity=0.331  Sum_probs=26.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      |++|.|+|.+||||||++..|+.+|...+
T Consensus         1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G   29 (229)
T PRK14494          1 MRAIGVIGFKDSGKTTLIEKILKNLKERG   29 (229)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHHHhCC
Confidence            89999999999999999999999997653

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.11  E-value=0.0099  Score=58.42  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|+||+||||+|+.+++.+++.
T Consensus        45 a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         45 GYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            58999999999999999999999764

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.10  E-value=0.00086  Score=58.67  Aligned_cols=26  Identities=38%  Similarity=0.727  Sum_probs=24.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ||-++|+|+||.||||-+..|+..|-
T Consensus        48 mP~liisGpPG~GKTTsi~~LAr~LL   73 (333)
T KOG0991|consen   48 MPNLIISGPPGTGKTTSILCLARELL   73 (333)
T ss_pred             CCceEeeCCCCCchhhHHHHHHHHHh
Confidence            89999999999999999999998773

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.09  E-value=0.007  Score=59.54  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=23.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+|+.+++.+.+
T Consensus        38 a~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         38 AYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhc
Confidence            5799999999999999999999875

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.09  E-value=0.0004  Score=65.85  Aligned_cols=25  Identities=44%  Similarity=0.598  Sum_probs=23.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |++.|+||+||||+|++||+.+...
T Consensus       266 ILIAG~PGaGKsTFaqAlAefy~~~  290 (604)
T COG1855         266 ILIAGAPGAGKSTFAQALAEFYASQ  290 (604)
T ss_pred             eEEecCCCCChhHHHHHHHHHHHhc
Confidence            7999999999999999999999875

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.09  E-value=0.00049  Score=55.38  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=24.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +|+|.|..||||||+++.+++.++..
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            79999999999999999999998753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.09  E-value=0.0009  Score=55.62  Aligned_cols=30  Identities=30%  Similarity=0.344  Sum_probs=27.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEA   30 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~   30 (303)
                      ||++-++|+.+|||||+...|...|...++
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~   31 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGY   31 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCc
Confidence            789999999999999999999999988753

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.0007  Score=67.55  Aligned_cols=68  Identities=18%  Similarity=0.368  Sum_probs=44.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec-----CC-ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID-----EA-SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDN   75 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~-----~~-~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~   75 (303)
                      |+++|.||||.|||++++.+|+.++..+     +.++     |+ ... .++.-|-.+...+.++     .++++=..+.
T Consensus       351 pILcLVGPPGVGKTSLgkSIA~al~Rkf-----vR~sLGGvrDEAEIR-GHRRTYIGamPGrIiQ-----~mkka~~~NP  419 (782)
T COG0466         351 PILCLVGPPGVGKTSLGKSIAKALGRKF-----VRISLGGVRDEAEIR-GHRRTYIGAMPGKIIQ-----GMKKAGVKNP  419 (782)
T ss_pred             cEEEEECCCCCCchhHHHHHHHHhCCCE-----EEEecCccccHHHhc-cccccccccCChHHHH-----HHHHhCCcCC
Confidence            7999999999999999999999998753     3322     11 111 1122455555455444     3444445677


Q ss_pred             EEEEc
Q 047717           76 IIIVD   80 (303)
Q Consensus        76 ~VIvD   80 (303)
                      ++++|
T Consensus       420 v~LLD  424 (782)
T COG0466         420 VFLLD  424 (782)
T ss_pred             eEEee
Confidence            77777

>PLN02796 D-glycerate 3-kinase

Probab=97.07  E-value=0.00075  Score=62.71  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +|.|+|.+||||||+++.|...+...
T Consensus       102 iIGI~G~sGSGKSTLa~~L~~lL~~~  127 (347)
T PLN02796        102 VIGISAPQGCGKTTLVFALVYLFNAT  127 (347)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhccc
Confidence            68999999999999999999988653

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.07  E-value=0.0019  Score=61.65  Aligned_cols=38  Identities=18%  Similarity=0.261  Sum_probs=28.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS   41 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~   41 (303)
                      +|+|+|++||||||++..|+..+... .+..+.+++-+.
T Consensus       225 vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt  262 (432)
T PRK12724        225 VVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDN  262 (432)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccc
Confidence            68999999999999999999865321 144566665443

>PRK13764 ATPase; Provisional

Probab=97.05  E-value=0.0079  Score=60.08  Aligned_cols=35  Identities=34%  Similarity=0.493  Sum_probs=27.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .|+++|+|||||||+++.|+.++...  +..+..+.+
T Consensus       259 ~ILIsG~TGSGKTTll~AL~~~i~~~--~riV~TiED  293 (602)
T PRK13764        259 GILIAGAPGAGKSTFAQALAEFYADM--GKIVKTMES  293 (602)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhC--CCEEEEECC
Confidence            58999999999999999999998753  333434443

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.02  E-value=0.00091  Score=49.40  Aligned_cols=34  Identities=38%  Similarity=0.527  Sum_probs=28.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +|+++|.+|+||||++..|+..+...  +..+..++
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~--g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKR--GKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEC
Confidence            47899999999999999999999764  55666666

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.02  E-value=0.012  Score=57.57  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=23.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -++|+|+||+||||+|+.+++.+++.
T Consensus        37 a~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         37 SILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             eEEEECCCCccHHHHHHHHHHHHcCc
Confidence            48999999999999999999998753

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.02  E-value=0.00058  Score=57.29  Aligned_cols=24  Identities=38%  Similarity=0.541  Sum_probs=21.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|+|.||+||||+.+.+.+.+..
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~   25 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKK   25 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhc
Confidence            799999999999999999999943

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.02  E-value=0.00052  Score=53.04  Aligned_cols=25  Identities=44%  Similarity=0.490  Sum_probs=22.5

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|.||+|||++|+.|++.+...
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~   25 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKH   25 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999888653

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK09183 transposase/IS protein; Provisional

Probab=97.01  E-value=0.0032  Score=56.57  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=25.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      .++|.|+||+|||++|..|+......  +..+.+++
T Consensus       104 ~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~  137 (259)
T PRK09183        104 NIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT  137 (259)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence            47899999999999999998765433  34555544

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.0037  Score=61.49  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=23.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|-|+||+|||.+|++|+.+++..
T Consensus       226 vLlHGPPGCGKT~lA~AiAgel~vP  250 (802)
T KOG0733|consen  226 VLLHGPPGCGKTSLANAIAGELGVP  250 (802)
T ss_pred             eeeeCCCCccHHHHHHHHhhhcCCc
Confidence            7899999999999999999998764

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.99  E-value=0.0029  Score=58.07  Aligned_cols=37  Identities=27%  Similarity=0.488  Sum_probs=27.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .|+|+|.+||||||+++.|...+.....+..++.+++
T Consensus       134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd  170 (299)
T TIGR02782       134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED  170 (299)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence            5889999999999999999988754211234555554

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.99  E-value=0.0064  Score=62.62  Aligned_cols=24  Identities=29%  Similarity=0.567  Sum_probs=21.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|.|+||+|||++|+.|+..++.
T Consensus       490 iLL~GppGtGKT~lakalA~e~~~  513 (733)
T TIGR01243       490 VLLFGPPGTGKTLLAKAVATESGA  513 (733)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCC
Confidence            789999999999999999988764

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=96.99  E-value=0.0087  Score=55.43  Aligned_cols=37  Identities=24%  Similarity=0.403  Sum_probs=26.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .|+|+|.+||||||+.+.|...+........++.+++
T Consensus       150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd  186 (319)
T PRK13894        150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIED  186 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcC
Confidence            5899999999999999999987532111234555554

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.0056  Score=60.66  Aligned_cols=135  Identities=19%  Similarity=0.216  Sum_probs=67.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCC-----------------------------ccEEEecCC-ccCCCccccCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAK-----------------------------ETVRIIDEA-SFHLDRNQSYA   51 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~-----------------------------~~v~~~~~~-~~~~~~~~~y~   51 (303)
                      .=|++.|+||+||||+|+.|+..-+...+.                             ..++++|+. .+...+.+ -.
T Consensus       469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g-~~  547 (693)
T KOG0730|consen  469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG-SS  547 (693)
T ss_pred             ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC-Cc
Confidence            358999999999999999999887653210                             111222221 11111110 00


Q ss_pred             CchhhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC
Q 047717           52 SMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD  131 (303)
Q Consensus        52 ~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~  131 (303)
                      ....++.+. .+...+.-.....+++|+-++|.-..    +..+.-.-|--..+||+..|....+..+.+-..+. -+++
T Consensus       548 ~~v~~RVls-qLLtEmDG~e~~k~V~ViAATNRpd~----ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-mp~~  621 (693)
T KOG0730|consen  548 SGVTDRVLS-QLLTEMDGLEALKNVLVIAATNRPDM----IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-MPFS  621 (693)
T ss_pred             cchHHHHHH-HHHHHcccccccCcEEEEeccCChhh----cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-CCCC
Confidence            011111111 11112222223568899999984321    22122222445669999999888776665432211 2333


Q ss_pred             HH-HHHHHHHHhc
Q 047717          132 DK-IFEDLVRRFE  143 (303)
Q Consensus       132 ~e-~~~~l~~r~E  143 (303)
                      ++ .++.++++-|
T Consensus       622 ~~vdl~~La~~T~  634 (693)
T KOG0730|consen  622 EDVDLEELAQATE  634 (693)
T ss_pred             ccccHHHHHHHhc
Confidence            33 4556665543

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.98  E-value=0.011  Score=55.68  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=23.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+|+.+++.+..
T Consensus        40 ~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         40 AWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHhcC
Confidence            5789999999999999999999864

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.97  E-value=0.00083  Score=60.70  Aligned_cols=38  Identities=32%  Similarity=0.448  Sum_probs=31.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .+|-|+|.||+||||+...|..+|...+....|+.+|.
T Consensus        52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP   89 (323)
T COG1703          52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP   89 (323)
T ss_pred             cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence            37899999999999999999999977654455666664

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.97  E-value=0.029  Score=56.08  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=23.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|++|+||||+|+.|++.+.+
T Consensus        37 a~Lf~Gp~G~GKTt~A~~lAk~l~c   61 (584)
T PRK14952         37 AYLFSGPRGCGKTSSARILARSLNC   61 (584)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4789999999999999999999875

>TIGR02012 tigrfam_recA protein RecA

Probab=96.96  E-value=0.0062  Score=56.32  Aligned_cols=37  Identities=30%  Similarity=0.336  Sum_probs=28.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .++.|.|+|||||||+|-+++......  +..++++|-+
T Consensus        56 ~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E   92 (321)
T TIGR02012        56 RIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAE   92 (321)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEccc
Confidence            378999999999999999987766443  4556666643

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.96  E-value=0.026  Score=53.86  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=23.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -++|+|+||+||||+|+.+++.+.+.
T Consensus        40 a~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         40 GYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            37899999999999999999999763

>PRK08181 transposase; Validated

Probab=96.96  E-value=0.0031  Score=56.93  Aligned_cols=121  Identities=18%  Similarity=0.166  Sum_probs=61.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      -++|+|+||+|||.+|..|+..+-..  +..|.+++-..+--.-...+.+    .    .+. ...+.+.+-.++|+|..
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~~~L~~~l~~a~~~----~----~~~-~~l~~l~~~dLLIIDDl  176 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRTTDLVQKLQVARRE----L----QLE-SAIAKLDKFDLLILDDL  176 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeHHHHHHHHHHHHhC----C----cHH-HHHHHHhcCCEEEEecc
Confidence            37999999999999999999877543  4455554421110000000000    0    111 11223455689999987


Q ss_pred             CCch---HHHHHHHHHHHH-cCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 047717           83 NSIK---GYRYELWCLARA-AGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVR  140 (303)
Q Consensus        83 n~~k---~~R~~l~~~ak~-~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~  140 (303)
                      .+..   .....++.+... ++....+|--..+++.......      +......+++++..
T Consensus       177 g~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~------D~~~a~aildRL~h  232 (269)
T PRK08181        177 AYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFP------DPAMTLAAVDRLVH  232 (269)
T ss_pred             ccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcC------CccchhhHHHhhhc
Confidence            6543   334455554332 2222233334455555443331      12234556666654

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.96  E-value=0.00065  Score=61.03  Aligned_cols=25  Identities=32%  Similarity=0.577  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+||||+|+.+++.+..
T Consensus        44 ~vll~GppGtGKTtlA~~ia~~l~~   68 (261)
T TIGR02881        44 HMIFKGNPGTGKTTVARILGKLFKE   68 (261)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999998753

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.96  E-value=0.003  Score=57.52  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +|+|+|++||||||++..|+.++....-+..|.+++-+
T Consensus       196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D  233 (282)
T TIGR03499       196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD  233 (282)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence            78999999999999999999988543112456666543

>COG3911 Predicted ATPase [General function prediction only]

Probab=96.94  E-value=0.0016  Score=53.01  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      |..++|+|.||+||||+.++|++.
T Consensus         9 ~~~fIltGgpGaGKTtLL~aLa~~   32 (183)
T COG3911           9 HKRFILTGGPGAGKTTLLAALARA   32 (183)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHc
Confidence            568999999999999999999875

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.0067  Score=56.68  Aligned_cols=112  Identities=23%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC----------CccccCCCchhhHHHHHHHHHHHHHhc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL----------DRNQSYASMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~----------~~~~~y~~~~~e~~~r~~l~~~v~~~L   71 (303)
                      .+|.+.|+-||||||.+..||-++...++..-.+.-|....+.          .+-.+|... .+...-......+++.-
T Consensus       102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsy-te~dpv~ia~egv~~fK  180 (483)
T KOG0780|consen  102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSY-TEADPVKIASEGVDRFK  180 (483)
T ss_pred             cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecc-cccchHHHHHHHHHHHH
Confidence            3899999999999999999999998875433333323221110          001123211 11111112223444443


Q ss_pred             CC-CCEEEEcCCCCch---HHHHHHHHHHHHcCCcEEEEEEecCHHH
Q 047717           72 SK-DNIIIVDSLNSIK---GYRYELWCLARAAGIRYCVLYCDLEEDH  114 (303)
Q Consensus        72 ~~-~~~VIvD~~n~~k---~~R~~l~~~ak~~~~~~~vI~l~~~~e~  114 (303)
                      .. -++||||..-..+   +.-.|+..++++......+..+|++.-.
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ  227 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ  227 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH
Confidence            33 3688899765433   3455666677777766666667887543

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.92  E-value=0.0019  Score=61.47  Aligned_cols=26  Identities=27%  Similarity=0.312  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -|+|.|+||+||||+|+.|++.++..
T Consensus        52 ~ILliGp~G~GKT~LAr~LAk~l~~~   77 (443)
T PRK05201         52 NILMIGPTGVGKTEIARRLAKLANAP   77 (443)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCh
Confidence            58999999999999999999998654

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.92  E-value=0.0012  Score=54.62  Aligned_cols=33  Identities=33%  Similarity=0.391  Sum_probs=26.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRII   37 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~   37 (303)
                      +|.|+|++||||||++..|...+...  +..+..+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~--G~~V~vi   33 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKAR--GYRVATI   33 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEE
Confidence            47899999999999999999998765  3444443

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.92  E-value=0.013  Score=58.99  Aligned_cols=26  Identities=27%  Similarity=0.334  Sum_probs=23.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|+||+||||+|+.|++.+++.
T Consensus        39 AyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         39 AYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            57999999999999999999999763

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.92  E-value=0.0014  Score=55.47  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=25.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      ++|.|.||+|||.+|..++.++-..  +..+.++.
T Consensus        50 l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~   82 (178)
T PF01695_consen   50 LILYGPPGTGKTHLAVAIANEAIRK--GYSVLFIT   82 (178)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE
T ss_pred             EEEEhhHhHHHHHHHHHHHHHhccC--CcceeEee
Confidence            7899999999999999999877554  45666654

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=96.92  E-value=0.012  Score=51.85  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=27.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|+|.||+|||+++.+++..+-.. .+..+.+++
T Consensus        15 l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s   49 (242)
T cd00984          15 LIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFS   49 (242)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEe
Confidence            79999999999999999998766432 144566655

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.92  E-value=0.0012  Score=62.71  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=23.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +|.|+|.+||||||+++.|...+...
T Consensus       214 IIGIsG~qGSGKSTLa~~L~~lL~~~  239 (460)
T PLN03046        214 VIGFSAPQGCGKTTLVFALDYLFRVT  239 (460)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccc
Confidence            67899999999999999998887643

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=96.91  E-value=0.0014  Score=61.98  Aligned_cols=29  Identities=21%  Similarity=0.232  Sum_probs=26.8

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      |++|.|+|.|||||||+.+.|...|...+
T Consensus       205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g  233 (366)
T PRK14489        205 PPLLGVVGYSGTGKTTLLEKLIPELIARG  233 (366)
T ss_pred             ccEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence            67999999999999999999999998764

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.91  E-value=0.011  Score=61.24  Aligned_cols=26  Identities=27%  Similarity=0.349  Sum_probs=23.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|++|+||||+|+.|++.|.+.
T Consensus        39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         39 AYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            37899999999999999999999763

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.91  E-value=0.0075  Score=57.16  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS   41 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~   41 (303)
                      .|+|+|++||||||++..|+..+...  +..+.+++-+.
T Consensus       243 vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt  279 (436)
T PRK11889        243 TIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDH  279 (436)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCC
Confidence            68999999999999999999888644  44555555443

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.91  E-value=0.0053  Score=55.34  Aligned_cols=35  Identities=17%  Similarity=0.404  Sum_probs=27.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +|+|+|.+||||||+.+.+...+...  +..++.+++
T Consensus        82 lilisG~tGSGKTT~l~all~~i~~~--~~~iitiEd  116 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNTP--EKNIITVED  116 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhCCC--CCeEEEECC
Confidence            79999999999999999988777542  334555554

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd04163 Era Era subfamily

Probab=96.89  E-value=0.012  Score=47.56  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ..|++.|.|||||||+.+.|...
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999998643

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.89  E-value=0.00081  Score=64.13  Aligned_cols=27  Identities=33%  Similarity=0.389  Sum_probs=24.4

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |..|+|+|.+||||||+++.|+++++.
T Consensus       219 ~~~IvI~G~~gsGKTTL~~~La~~~g~  245 (399)
T PRK08099        219 VRTVAILGGESSGKSTLVNKLANIFNT  245 (399)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            357999999999999999999999864

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.88  E-value=0.0028  Score=56.39  Aligned_cols=34  Identities=26%  Similarity=0.449  Sum_probs=27.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -++|.|.||+|||+++..|+.++...  +..+.+++
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it  134 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT  134 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE
Confidence            47999999999999999999998664  45566554

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.88  E-value=0.0012  Score=60.53  Aligned_cols=28  Identities=29%  Similarity=0.399  Sum_probs=25.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |.+|.|+|+|||||||++..|...+...
T Consensus        34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~   61 (300)
T TIGR00750        34 AHRVGITGTPGAGKSTLLEALGMELRRR   61 (300)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            4689999999999999999999988664

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=96.87  E-value=0.0016  Score=51.13  Aligned_cols=35  Identities=37%  Similarity=0.431  Sum_probs=28.7

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |+++|.+|+||||++..|+..+...  +.++.++|.+
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~--g~~V~~id~D   36 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEK--GKPVLAIDAD   36 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECC
Confidence            7899999999999999999998654  4567666643

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.87  E-value=0.018  Score=56.56  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=28.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +|.|+|++|+||||++..|+..+...+.+..+.+++.+
T Consensus       352 vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD  389 (559)
T PRK12727        352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD  389 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence            68999999999999999999877544323456666544

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=96.84  E-value=0.04  Score=55.05  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -++++|+||+||||+|+.+++.+.+.
T Consensus        40 A~Lf~GP~GvGKTTlA~~lAk~L~C~   65 (605)
T PRK05896         40 AYIFSGPRGIGKTSIAKIFAKAINCL   65 (605)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            47899999999999999999999754

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=96.83  E-value=0.0078  Score=56.88  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=27.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +|+|+|++||||||+.+.|.+++.....+..++.++|
T Consensus       151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEd  187 (372)
T TIGR02525       151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYED  187 (372)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            6899999999999999999988864222234555554

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.83  E-value=0.008  Score=57.07  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=28.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcccc--CCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESE--AKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~--~~~~v~~~~~~   40 (303)
                      +|++.|++|+||||.+..|+.++....  -+..|.+++-+
T Consensus       176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D  215 (388)
T PRK12723        176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID  215 (388)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc
Confidence            789999999999999999998876321  13456555543

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.83  E-value=0.015  Score=50.71  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|.||||||++|.+++...
T Consensus        21 v~~I~G~~GsGKT~l~~~ia~~~   43 (226)
T cd01393          21 ITEIFGEFGSGKTQLCLQLAVEA   43 (226)
T ss_pred             EEEEeCCCCCChhHHHHHHHHHh
Confidence            78999999999999999998765

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.82  E-value=0.0088  Score=56.55  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=27.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.||+||||++.+++..+...  +..+++++
T Consensus        84 lvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs  117 (372)
T cd01121          84 VILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVS  117 (372)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEE
Confidence            78999999999999999999877543  24565554

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.80  E-value=0.005  Score=57.60  Aligned_cols=36  Identities=22%  Similarity=0.450  Sum_probs=27.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +|+|+|++||||||+.+.|...+.... +..++.+.+
T Consensus       124 ~ili~G~tGSGKTT~l~al~~~i~~~~-~~~i~tiEd  159 (343)
T TIGR01420       124 LILVTGPTGSGKSTTLASMIDYINKNA-AGHIITIED  159 (343)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCC-CCEEEEEcC
Confidence            799999999999999999988776421 234445443

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.80  E-value=0.0044  Score=59.47  Aligned_cols=26  Identities=27%  Similarity=0.491  Sum_probs=22.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +-++|.|+||+||||+|+.|++.++.
T Consensus        37 ~~ilL~GppGtGKTtLA~~ia~~~~~   62 (413)
T PRK13342         37 SSMILWGPPGTGKTTLARIIAGATDA   62 (413)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45788999999999999999998754

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.80  E-value=0.0012  Score=52.20  Aligned_cols=25  Identities=40%  Similarity=0.627  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +++|.|.||+|||++++.+++.+..
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~~~~   30 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQLNA   30 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHhHH
Confidence            6899999999999999999998753

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=96.80  E-value=0.023  Score=55.12  Aligned_cols=113  Identities=9%  Similarity=0.162  Sum_probs=61.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLN   83 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n   83 (303)
                      ++|.|.+|+|||++++.++.++.....+..+++++.+.+..    .+.......  ...+. .+.+.+..-.++|+|...
T Consensus       144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~----~~~~~l~~~--~~~~~-~~~~~~~~~dvLiIDDiq  216 (450)
T PRK14087        144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR----KAVDILQKT--HKEIE-QFKNEICQNDVLIIDDVQ  216 (450)
T ss_pred             eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH----HHHHHHHHh--hhHHH-HHHHHhccCCEEEEeccc
Confidence            68999999999999999999876533345566555322210    000000000  00111 233344566799999986


Q ss_pred             Cch---HHHHHHHHHHH---HcCCcEEEEEEecCHHHH---HHHHHHhhh
Q 047717           84 SIK---GYRYELWCLAR---AAGIRYCVLYCDLEEDHC---RKWNKERHE  124 (303)
Q Consensus        84 ~~k---~~R~~l~~~ak---~~~~~~~vI~l~~~~e~~---~~R~~~R~~  124 (303)
                      ...   ....+++.+..   ..+. ..++-.+.+++..   .+|+..|-.
T Consensus       217 ~l~~k~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~SR~~  265 (450)
T PRK14087        217 FLSYKEKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLITRFN  265 (450)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHHHHh
Confidence            543   23445555433   2332 2344445565543   467777754

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.80  E-value=0.016  Score=59.12  Aligned_cols=26  Identities=23%  Similarity=0.311  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|.+|+||||+|+.|++.+++.
T Consensus        40 AyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         40 AYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            57899999999999999999999763

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.80  E-value=0.0049  Score=55.14  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=24.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +.|++.|..||||||+.++|-.++...
T Consensus        20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~   46 (366)
T KOG1532|consen   20 VIILVVGMAGSGKTTFMQRLNSHLHAK   46 (366)
T ss_pred             cEEEEEecCCCCchhHHHHHHHHHhhc
Confidence            478999999999999999999988765

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=96.80  E-value=0.00091  Score=58.34  Aligned_cols=23  Identities=39%  Similarity=0.547  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +|.|+|.|||||||+|+.+.+..
T Consensus         2 iI~i~G~~gsGKstva~~~~~~g   24 (227)
T PHA02575          2 LIAISGKKRSGKDTVADFIIENY   24 (227)
T ss_pred             EEEEeCCCCCCHHHHHHHHHhcC
Confidence            89999999999999999987653

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=96.79  E-value=0.002  Score=61.61  Aligned_cols=30  Identities=23%  Similarity=0.206  Sum_probs=27.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEA   30 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~   30 (303)
                      |++|.|+|..||||||++..|..+|...++
T Consensus         1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~   30 (452)
T PRK14495          1 MRVYGIIGWKDAGKTGLVERLVAAIAARGF   30 (452)
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence            899999999999999999999999987643

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.78  E-value=0.024  Score=56.20  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=23.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+|+.|++.+.+
T Consensus        40 a~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         40 AYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999875

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.78  E-value=0.0014  Score=56.71  Aligned_cols=27  Identities=26%  Similarity=0.455  Sum_probs=24.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|+|.|+|++||||||+.+.+...+..
T Consensus        22 ~~~i~~~G~~gsGKTTli~~l~~~~~~   48 (207)
T TIGR00073        22 LVVLNFMSSPGSGKTTLIEKLIDNLKD   48 (207)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            578999999999999999999888653

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.77  E-value=0.0018  Score=59.90  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +|+|+|++||||||.+..|+..+...  +..|.+++.+
T Consensus       116 vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~D  151 (318)
T PRK10416        116 VILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAGD  151 (318)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEecC
Confidence            78999999999999999999988654  4567766644

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.77  E-value=0.015  Score=60.19  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|+||+||||+|+.|++.+.+.
T Consensus        40 AyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         40 AYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhccCc
Confidence            47899999999999999999999763

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.77  E-value=0.011  Score=52.19  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=24.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      .+++|.|.||||||++|.+++...-..  +..+++++
T Consensus        22 s~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs   56 (237)
T TIGR03877        22 NVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVA   56 (237)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEE
Confidence            378999999999999999876543222  34555554

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.77  E-value=0.021  Score=56.33  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=23.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|+||+||||+|+.|++.+++.
T Consensus        40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         40 AYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            47899999999999999999999763

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.75  E-value=0.0011  Score=59.26  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=23.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+++|+|++||||||+++.+...+..
T Consensus        44 ~~~~l~G~~G~GKTtl~~~l~~~l~~   69 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLLKRLDQ   69 (269)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            37899999999999999999988763

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=96.75  E-value=0.0079  Score=50.13  Aligned_cols=77  Identities=17%  Similarity=0.187  Sum_probs=46.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~   81 (303)
                      +.+.++-+|+||||+|..|+..+...  +..|+++|-+.-+..-...+.......    .+...+.... ..-+.||+|.
T Consensus         2 i~v~s~kgG~GKTt~a~~LA~~la~~--g~~vllvD~D~q~~~~~~~~~~~~~~~----~l~~~~~~~~~~~yD~VIiD~   75 (169)
T cd02037           2 IAVMSGKGGVGKSTVAVNLALALAKL--GYKVGLLDADIYGPSIPKMWRGPMKMG----AIKQFLTDVDWGELDYLVIDM   75 (169)
T ss_pred             EEEecCCCcCChhHHHHHHHHHHHHc--CCcEEEEeCCCCCCCchHHHhCcchHH----HHHHHHHHhhcCCCCEEEEeC
Confidence            46788999999999999999999765  678888885532211000111111111    2222233322 3457899998


Q ss_pred             CCCc
Q 047717           82 LNSI   85 (303)
Q Consensus        82 ~n~~   85 (303)
                      ....
T Consensus        76 pp~~   79 (169)
T cd02037          76 PPGT   79 (169)
T ss_pred             CCCC
Confidence            7654

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.74  E-value=0.004  Score=59.35  Aligned_cols=26  Identities=27%  Similarity=0.312  Sum_probs=23.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -|+|.|+||+||||+|+.|++.++..
T Consensus        49 ~ILLiGppG~GKT~lAraLA~~l~~~   74 (441)
T TIGR00390        49 NILMIGPTGVGKTEIARRLAKLANAP   74 (441)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            58999999999999999999998754

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.73  E-value=0.0043  Score=56.78  Aligned_cols=28  Identities=43%  Similarity=0.517  Sum_probs=26.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |++|+|+|+.|||||-+|-.||+.++..
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~~e   30 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLGGE   30 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcCCc
Confidence            5799999999999999999999999864

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=96.72  E-value=0.016  Score=46.93  Aligned_cols=19  Identities=32%  Similarity=0.483  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La   22 (303)
                      |+|+|.+||||||+.+.|.
T Consensus         2 i~l~G~~g~GKTtL~~~l~   20 (170)
T cd01876           2 IAFAGRSNVGKSSLINALT   20 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            7899999999999999998

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=96.72  E-value=0.031  Score=52.07  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+|+.+++.+..
T Consensus        38 ~~Ll~G~~G~GKt~~a~~la~~l~~   62 (355)
T TIGR02397        38 AYLFSGPRGTGKTSIARIFAKALNC   62 (355)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            5789999999999999999999864

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.72  E-value=0.0014  Score=58.70  Aligned_cols=72  Identities=19%  Similarity=0.332  Sum_probs=44.5

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLN   83 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n   83 (303)
                      +++.|.||+|||.+|.+|+..+-..  +..|.++.-..+-..-...+.+.        .....+.+.+..-+++|+|...
T Consensus       108 l~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~~~~el~~~Lk~~~~~~--------~~~~~l~~~l~~~dlLIiDDlG  177 (254)
T COG1484         108 LVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLSKLKAAFDEG--------RLEEKLLRELKKVDLLIIDDIG  177 (254)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHHHHHhcC--------chHHHHHHHhhcCCEEEEeccc
Confidence            7899999999999999999988743  45565554221110001112111        2223344556677899999976


Q ss_pred             Cc
Q 047717           84 SI   85 (303)
Q Consensus        84 ~~   85 (303)
                      +.
T Consensus       178 ~~  179 (254)
T COG1484         178 YE  179 (254)
T ss_pred             Cc
Confidence            53

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=96.72  E-value=0.018  Score=51.44  Aligned_cols=36  Identities=25%  Similarity=0.188  Sum_probs=29.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      |++|.|.||+|||+++-+++..+.... +..|.+++-
T Consensus        21 L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~Sl   56 (259)
T PF03796_consen   21 LTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSL   56 (259)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEES
T ss_pred             EEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcC
Confidence            899999999999999999998776532 356777664

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.71  E-value=0.013  Score=60.44  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+||||+|+.|+..++.
T Consensus       214 giLL~GppGtGKT~laraia~~~~~  238 (733)
T TIGR01243       214 GVLLYGPPGTGKTLLAKAVANEAGA  238 (733)
T ss_pred             eEEEECCCCCChHHHHHHHHHHhCC
Confidence            4789999999999999999998764

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.71  E-value=0.021  Score=57.39  Aligned_cols=25  Identities=24%  Similarity=0.329  Sum_probs=23.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|++|+||||+|+.|++.+.+
T Consensus        40 A~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         40 AYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4789999999999999999999986

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.70  E-value=0.0014  Score=54.85  Aligned_cols=27  Identities=26%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      ++++|.|.+|+|||++.+++.+.+...
T Consensus        25 ~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   25 RNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             --EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            579999999999999999999988764

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.69  E-value=0.0026  Score=54.84  Aligned_cols=37  Identities=30%  Similarity=0.365  Sum_probs=28.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .++.|+|+||||||++|.+++......  +..+++++-+
T Consensus        13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e   49 (209)
T TIGR02237        13 TITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTE   49 (209)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence            378999999999999999998776433  4567777643

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.021  Score=53.57  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|.|+||+|||-+|++++...+-
T Consensus       248 vLm~GPPGTGKTlLAKAvATEc~t  271 (491)
T KOG0738|consen  248 VLMVGPPGTGKTLLAKAVATECGT  271 (491)
T ss_pred             eeeeCCCCCcHHHHHHHHHHhhcC
Confidence            789999999999999999988753

>PRK04195 replication factor C large subunit; Provisional

Probab=96.68  E-value=0.01  Score=58.11  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=23.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +.++|.|+||+||||+|+.|++.++.
T Consensus        40 ~~lLL~GppG~GKTtla~ala~el~~   65 (482)
T PRK04195         40 KALLLYGPPGVGKTSLAHALANDYGW   65 (482)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            36899999999999999999998864

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.67  E-value=0.018  Score=54.32  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS   41 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~   41 (303)
                      .+|+|+|+.||||||++..|+..+...  +..|.+++-+.
T Consensus       207 ~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDt  244 (407)
T PRK12726        207 RIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDT  244 (407)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCc
Confidence            478999999999999999999877443  35566665443

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.67  E-value=0.0057  Score=57.37  Aligned_cols=68  Identities=15%  Similarity=0.228  Sum_probs=41.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc---CCCCEEEE
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV---SKDNIIIV   79 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L---~~~~~VIv   79 (303)
                      .+.|-|+||+|||.+|+.++..++..     .+.++-..+.   . .|. ...|+.+|..+.. +....   .+-.++++
T Consensus       150 gllL~GPPGcGKTllAraiA~elg~~-----~i~vsa~eL~---s-k~v-GEsEk~IR~~F~~-A~~~a~~~~aPcVLFI  218 (413)
T PLN00020        150 ILGIWGGKGQGKSFQCELVFKKMGIE-----PIVMSAGELE---S-ENA-GEPGKLIRQRYRE-AADIIKKKGKMSCLFI  218 (413)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHcCCC-----eEEEEHHHhh---c-CcC-CcHHHHHHHHHHH-HHHHhhccCCCeEEEE
Confidence            57889999999999999999998753     4555422211   0 111 1247888855543 33322   12345666


Q ss_pred             cC
Q 047717           80 DS   81 (303)
Q Consensus        80 D~   81 (303)
                      |.
T Consensus       219 DE  220 (413)
T PLN00020        219 ND  220 (413)
T ss_pred             eh
Confidence            63

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.67  E-value=0.0021  Score=51.06  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+|+|.|.-||||||+++.|++.++..
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            489999999999999999999999753

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.64  E-value=0.038  Score=44.91  Aligned_cols=101  Identities=14%  Similarity=0.051  Sum_probs=55.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      ++.|.|+.||||||+.+.|+..+...   ...+.++..     ..-.|...-+....+ .+. .+...+.+-.++|+|-+
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~-----~~i~~~~~lS~G~~~-rv~-laral~~~p~illlDEP   97 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST-----VKIGYFEQLSGGEKM-RLA-LAKLLLENPNLLLLDEP   97 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe-----EEEEEEccCCHHHHH-HHH-HHHHHhcCCCEEEEeCC
Confidence            67899999999999999987765321   222333321     011121111111111 111 23334456789999976


Q ss_pred             C--CchHHHHHHHHHHHHcCCcEEEEEEecCHHHH
Q 047717           83 N--SIKGYRYELWCLARAAGIRYCVLYCDLEEDHC  115 (303)
Q Consensus        83 n--~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~  115 (303)
                      .  .....+..+....+..+.  .++++.-..+.+
T Consensus        98 ~~~LD~~~~~~l~~~l~~~~~--til~~th~~~~~  130 (144)
T cd03221          98 TNHLDLESIEALEEALKEYPG--TVILVSHDRYFL  130 (144)
T ss_pred             ccCCCHHHHHHHHHHHHHcCC--EEEEEECCHHHH
Confidence            5  345567777776666542  455555444444

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.64  E-value=0.033  Score=55.87  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=24.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +.++|+|+||+||||+|+.|++.+.+
T Consensus        39 ha~Lf~GPpG~GKTtiArilAk~L~C   64 (624)
T PRK14959         39 PAYLFSGTRGVGKTTIARIFAKALNC   64 (624)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhccc
Confidence            56899999999999999999999975

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=96.63  E-value=0.0032  Score=59.50  Aligned_cols=27  Identities=37%  Similarity=0.517  Sum_probs=24.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+|+|+|++||||||++..|...|...
T Consensus         6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~   32 (369)
T PRK14490          6 FEIAFCGYSGSGKTTLITALVRRLSER   32 (369)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence            479999999999999999999999764

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.63  E-value=0.0017  Score=60.26  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=24.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +..|+|.|.|||||||+++.|+..++.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~  188 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNT  188 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            357999999999999999999998764

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.63  E-value=0.06  Score=54.06  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+|+.|++.+.+
T Consensus        40 a~Lf~Gp~G~GKTtlA~~lA~~l~c   64 (585)
T PRK14950         40 AYLFTGPRGVGKTSTARILAKAVNC   64 (585)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            5789999999999999999999875

>PRK04328 hypothetical protein; Provisional

Probab=96.62  E-value=0.015  Score=51.82  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=24.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.||||||++|.+++...-..  +..+++++
T Consensus        25 ~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis   58 (249)
T PRK04328         25 VVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVA   58 (249)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEE
Confidence            78999999999999999976553222  34555554

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.62  E-value=0.0027  Score=58.79  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=26.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .|+|+|.+||||||+.+.|...+.....+..++.+.|
T Consensus       146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd  182 (323)
T PRK13833        146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILED  182 (323)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecC
Confidence            5899999999999999999988742211234455553

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.62  E-value=0.0024  Score=53.81  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=25.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.||+|||+++.+++...-..  +..+.+++
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s   34 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVT   34 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEE
Confidence            37899999999999999987765332  34555554

A related protein is found in archaea.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=96.61  E-value=0.0017  Score=60.06  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=23.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|+||+||||+++.|++.++..
T Consensus        67 ilL~G~pGtGKTtla~~lA~~l~~~   91 (327)
T TIGR01650        67 VMVQGYHGTGKSTHIEQIAARLNWP   91 (327)
T ss_pred             EEEEeCCCChHHHHHHHHHHHHCCC
Confidence            8999999999999999999999865

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>CHL00176 ftsH cell division protein; Validated

Probab=96.61  E-value=0.03  Score=56.58  Aligned_cols=25  Identities=28%  Similarity=0.518  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      =|+|.|+||+|||++|+.++...+.
T Consensus       218 gVLL~GPpGTGKT~LAralA~e~~~  242 (638)
T CHL00176        218 GVLLVGPPGTGKTLLAKAIAGEAEV  242 (638)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3899999999999999999987754

>CHL00181 cbbX CbbX; Provisional

Probab=96.60  E-value=0.0017  Score=59.17  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+||||+|+.+++.+..
T Consensus        61 ~ill~G~pGtGKT~lAr~la~~~~~   85 (287)
T CHL00181         61 HMSFTGSPGTGKTTVALKMADILYK   85 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3789999999999999999998754

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0024  Score=63.81  Aligned_cols=28  Identities=29%  Similarity=0.477  Sum_probs=25.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      +++.+.|+||.|||++|+.+|+.|+..+
T Consensus       439 kIlCf~GPPGVGKTSI~kSIA~ALnRkF  466 (906)
T KOG2004|consen  439 KILCFVGPPGVGKTSIAKSIARALNRKF  466 (906)
T ss_pred             cEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence            6899999999999999999999998753

>TIGR00416 sms DNA repair protein RadA

Probab=96.60  E-value=0.016  Score=56.23  Aligned_cols=35  Identities=31%  Similarity=0.397  Sum_probs=27.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      .+++|.|.||+||||++.+++..+...  +..+++++
T Consensus        95 svilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs  129 (454)
T TIGR00416        95 SLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVS  129 (454)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEE
Confidence            378999999999999999998776543  34565655

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=96.59  E-value=0.017  Score=51.16  Aligned_cols=104  Identities=20%  Similarity=0.173  Sum_probs=59.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccC-------CCc-hhhHHHHHHHHHHHHHhcCCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSY-------ASM-PAEKNLRGVLRSEVDRSVSKD   74 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y-------~~~-~~e~~~r~~l~~~v~~~L~~~   74 (303)
                      ++++.|--|+||||.|..|+.++...  +.+++++|.+..+..-...|       .-. ..+-..+ .+...+.+....+
T Consensus         5 ~~i~~~KGGvGKSt~a~~la~~l~~~--g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~~~~i~~r-~fD~Lve~i~~~~   81 (241)
T PRK13886          5 HMVLQGKGGVGKSFIAATIAQYKASK--GQKPLCIDTDPVNATFEGYKALNVRRLNIMDGDEINTR-NFDALVEMIASTE   81 (241)
T ss_pred             EEEecCCCCCcHHHHHHHHHHHHHhC--CCCEEEEECCCCCchhhhHHhcCCcceecccCCccchh-hHHHHHHHHhccC
Confidence            34556999999999999999998765  56778877553221000011       000 0111111 3444555555445


Q ss_pred             CEEEEcCCC--CchHHHH----HHHHHHHHcCCcEEEEEEe
Q 047717           75 NIIIVDSLN--SIKGYRY----ELWCLARAAGIRYCVLYCD  109 (303)
Q Consensus        75 ~~VIvD~~n--~~k~~R~----~l~~~ak~~~~~~~vI~l~  109 (303)
                      ..+|+|...  ...-..|    .+..++.+.|...++.++.
T Consensus        82 ~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi  122 (241)
T PRK13886         82 GDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVV  122 (241)
T ss_pred             CCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEE
Confidence            557777543  2222233    5667788888887776654

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.58  E-value=0.0026  Score=52.18  Aligned_cols=34  Identities=32%  Similarity=0.488  Sum_probs=26.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +|.++|.+||||||++..|+..+...  +.++.+++
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~--g~~v~ii~   34 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRAR--GKRVAVLA   34 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEE
Confidence            37899999999999999999988654  34454444

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=96.57  E-value=0.031  Score=47.37  Aligned_cols=26  Identities=35%  Similarity=0.376  Sum_probs=23.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ..++|.|+||+||||+|+.+++.+..
T Consensus        15 ~~~L~~G~~G~gkt~~a~~~~~~l~~   40 (188)
T TIGR00678        15 HAYLFAGPEGVGKELLALALAKALLC   40 (188)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            36899999999999999999998864

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.57  E-value=0.02  Score=55.09  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=28.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc-cccCCccEEEecCCc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK-ESEAKETVRIIDEAS   41 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~-~~~~~~~v~~~~~~~   41 (303)
                      +|+|.|++|+||||.+..|+.++. .. -+..|.+++-+.
T Consensus       223 ~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~  261 (424)
T PRK05703        223 VVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDT  261 (424)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCc
Confidence            689999999999999999998775 21 145666666443

>TIGR00763 lon ATP-dependent protease La

Probab=96.56  E-value=0.0026  Score=65.86  Aligned_cols=27  Identities=26%  Similarity=0.555  Sum_probs=24.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +.++|.|+||+||||+|+.|++.++..
T Consensus       348 ~~lll~GppG~GKT~lAk~iA~~l~~~  374 (775)
T TIGR00763       348 PILCLVGPPGVGKTSLGKSIAKALNRK  374 (775)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            468999999999999999999998653

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.56  E-value=0.0019  Score=52.56  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      |.-|+|.|..|||||||++.|...
T Consensus         1 MkrimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    1 MKRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             CceEEEECCCCCCHHHHHHHHcCC
Confidence            788999999999999999998653

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.56  E-value=0.0012  Score=52.68  Aligned_cols=25  Identities=36%  Similarity=0.518  Sum_probs=18.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|.||.||||+|+.|++.++..
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~   26 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLS   26 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCc
Confidence            7899999999999999999998754

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.55  E-value=0.034  Score=49.30  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=22.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -++|.|.+||||||+...|...+...
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~~~   40 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLRHK   40 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhccc
Confidence            47899999999999999998877654

This is thought to be an ATPase involved in viral DNA packaging [].

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.55  E-value=0.0019  Score=56.00  Aligned_cols=20  Identities=45%  Similarity=0.732  Sum_probs=18.2

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      +++|+|++||||||+.+.|-
T Consensus        30 vv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999864

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.55  E-value=0.0029  Score=56.97  Aligned_cols=124  Identities=15%  Similarity=0.210  Sum_probs=60.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-ccCCCccc--cCCCchhhHHHHHHHHHHHHHhcCCC-CEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-SFHLDRNQ--SYASMPAEKNLRGVLRSEVDRSVSKD-NII   77 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-~~~~~~~~--~y~~~~~e~~~r~~l~~~v~~~L~~~-~~V   77 (303)
                      ..|+|+|.+||||||+.+.|.+++...  ...++.+.+. .+......  .+.......    .+...+..+|..+ +.+
T Consensus       128 ~~ili~G~tGSGKTT~l~all~~i~~~--~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~----~~~~~l~~~LR~~pD~i  201 (270)
T PF00437_consen  128 GNILISGPTGSGKTTLLNALLEEIPPE--DERIVTIEDPPELRLPGPNQIQIQTRRDEI----SYEDLLKSALRQDPDVI  201 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHCHTT--TSEEEEEESSS-S--SCSSEEEEEEETTTB----SHHHHHHHHTTS--SEE
T ss_pred             eEEEEECCCccccchHHHHHhhhcccc--ccceEEeccccceeecccceEEEEeecCcc----cHHHHHHHHhcCCCCcc
Confidence            479999999999999999999888653  2455555542 23221110  010000111    2223445566644 455


Q ss_pred             EEcCCCCchHHHHHHHHHHHHcCCcE--EEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 047717           78 IVDSLNSIKGYRYELWCLARAAGIRY--CVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLV  139 (303)
Q Consensus        78 IvD~~n~~k~~R~~l~~~ak~~~~~~--~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~  139 (303)
                      |+.-.-....+.  +. .|...|...  ..+|-. +...+..|+..-..    ..+.+.+.++.
T Consensus       202 iigEiR~~e~~~--~~-~a~~tGh~~~~tT~Ha~-s~~~~i~Rl~~l~~----~~~~~~l~~~l  257 (270)
T PF00437_consen  202 IIGEIRDPEAAE--AI-QAANTGHLGSLTTLHAN-SAEDAIERLADLGM----EMDPESLRSRL  257 (270)
T ss_dssp             EESCE-SCHHHH--HH-HHHHTT-EEEEEEEE-S-SHHHHHHHHHHHCC----TSCHHHHHHHH
T ss_pred             cccccCCHhHHH--HH-HhhccCCceeeeeeecC-CHHHHHHHHHHHhc----ccCHHHHHHHH
Confidence            555433333322  21 233344433  444443 45556777765432    14555444433

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=96.54  E-value=0.024  Score=51.96  Aligned_cols=25  Identities=36%  Similarity=0.523  Sum_probs=23.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +++.|+||+||||.|..|++.+...
T Consensus        27 lL~~Gp~G~Gktt~a~~lA~~l~~~   51 (325)
T COG0470          27 LLFYGPPGVGKTTAALALAKELLCE   51 (325)
T ss_pred             eeeeCCCCCCHHHHHHHHHHHHhCC
Confidence            8999999999999999999998753

>PRK00093 GTP-binding protein Der; Reviewed

Probab=96.54  E-value=0.015  Score=55.97  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ||.|+|.|.||+||||+.+.|...
T Consensus         1 ~~~I~ivG~~~vGKStL~n~l~~~   24 (435)
T PRK00093          1 KPVVAIVGRPNVGKSTLFNRLTGK   24 (435)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999998643

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.54  E-value=0.035  Score=56.24  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=23.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|++|+||||+|+.|++.+.+.
T Consensus        40 a~Lf~GP~GvGKTTlAriLAk~LnC~   65 (709)
T PRK08691         40 AYLLTGTRGVGKTTIARILAKSLNCE   65 (709)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhccc
Confidence            58999999999999999999998764

>PRK09354 recA recombinase A; Provisional

Probab=96.53  E-value=0.022  Score=53.23  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=27.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .++.|.|+|||||||+|-+++......  +..+++++-+
T Consensus        61 ~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E   97 (349)
T PRK09354         61 RIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAE   97 (349)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCc
Confidence            378899999999999999987655433  4456666643

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.53  E-value=0.0031  Score=65.12  Aligned_cols=27  Identities=22%  Similarity=0.465  Sum_probs=24.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +.++|.|+||+||||+++.+++.++..
T Consensus       350 ~~i~l~GppG~GKTtl~~~ia~~l~~~  376 (784)
T PRK10787        350 PILCLVGPPGVGKTSLGQSIAKATGRK  376 (784)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            578999999999999999999988753

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.52  E-value=0.0021  Score=57.83  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|.|+||+|||++|+.|+..++.
T Consensus        24 vLL~G~~GtGKT~lA~~la~~lg~   47 (262)
T TIGR02640        24 VHLRGPAGTGKTTLAMHVARKRDR   47 (262)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC
Confidence            678999999999999999987754

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.51  E-value=0.026  Score=52.03  Aligned_cols=105  Identities=12%  Similarity=0.182  Sum_probs=56.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLN   83 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n   83 (303)
                      ++|.|.||+|||+++.+|+..+...  +..+.++.-..+-..-...+.+.        .+...+ ..+.+-.++|+|...
T Consensus       159 l~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~~~l~~~lk~~~~~~--------~~~~~l-~~l~~~dlLiIDDiG  227 (306)
T PRK08939        159 LYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFPEFIRELKNSISDG--------SVKEKI-DAVKEAPVLMLDDIG  227 (306)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEHHHHHHHHHHHHhcC--------cHHHHH-HHhcCCCEEEEecCC
Confidence            7899999999999999999998654  34444433111100000111111        111122 335677899999875


Q ss_pred             ---CchHHHHHHHH-HHH-Hc-CCcEEEEEEecCHHHHHHHH
Q 047717           84 ---SIKGYRYELWC-LAR-AA-GIRYCVLYCDLEEDHCRKWN  119 (303)
Q Consensus        84 ---~~k~~R~~l~~-~ak-~~-~~~~~vI~l~~~~e~~~~R~  119 (303)
                         ...+.|.++.. +.. .+ .....++=-..+.+.+.++.
T Consensus       228 ~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~  269 (306)
T PRK08939        228 AEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL  269 (306)
T ss_pred             CccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence               34555655544 322 21 22222333345666666555

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.51  E-value=0.0033  Score=55.05  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=25.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      .++|+|.||+|||++|+.++......  +..+++++
T Consensus        44 ~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~   77 (227)
T PRK08903         44 FFYLWGEAGSGRSHLLQALVADASYG--GRNARYLD   77 (227)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEe
Confidence            58999999999999999999876432  23444443

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.50  E-value=0.023  Score=49.64  Aligned_cols=34  Identities=18%  Similarity=0.355  Sum_probs=24.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.|||||||++.+++...-..  +..+++++
T Consensus        22 ~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is   55 (229)
T TIGR03881        22 FVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVT   55 (229)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEE
Confidence            78999999999999999877543222  34455554

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.50  E-value=0.0022  Score=58.74  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|+|+||+|||++|+.+++.++.
T Consensus        32 ~~ll~Gp~G~GKT~la~~ia~~~~~   56 (305)
T TIGR00635        32 HLLLYGPPGLGKTTLAHIIANEMGV   56 (305)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999998864

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.50  E-value=0.011  Score=54.65  Aligned_cols=35  Identities=34%  Similarity=0.361  Sum_probs=27.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      ++.|.|+|||||||+|-+++......  +..++++|-
T Consensus        57 iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~   91 (325)
T cd00983          57 IIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDA   91 (325)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECc
Confidence            78899999999999999988665433  445666664

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.49  E-value=0.0019  Score=63.66  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=24.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      ++++|.|+||+||||+|+.|++.+...
T Consensus       104 ~IL~LvGPpG~GKSsLa~~la~~le~~  130 (644)
T PRK15455        104 QILYLLGPVGGGKSSLAERLKSLMERV  130 (644)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHhC
Confidence            589999999999999999999988753

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.49  E-value=0.015  Score=54.74  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=22.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|+|+|++||||||+.+.|...+..
T Consensus       136 lilI~GpTGSGKTTtL~aLl~~i~~  160 (358)
T TIGR02524       136 IVFITGATGSGKSTLLAAIIRELAE  160 (358)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            7999999999999999999988753

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.48  E-value=0.035  Score=54.96  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=23.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+|+.+++.+.+
T Consensus        40 a~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (527)
T PRK14969         40 AYLFTGTRGVGKTTLARILAKSLNC   64 (527)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4689999999999999999999975

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.023  Score=55.25  Aligned_cols=67  Identities=22%  Similarity=0.340  Sum_probs=40.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      +++.|+||||||++|.+++..-...+    +.+++.+.+     .+|..+..-..+...+..+-+   +.-.++|+|..
T Consensus       541 vLl~Gp~~sGKTaLAA~iA~~S~FPF----vKiiSpe~m-----iG~sEsaKc~~i~k~F~DAYk---S~lsiivvDdi  607 (744)
T KOG0741|consen  541 VLLEGPPGSGKTALAAKIALSSDFPF----VKIISPEDM-----IGLSESAKCAHIKKIFEDAYK---SPLSIIVVDDI  607 (744)
T ss_pred             EEEecCCCCChHHHHHHHHhhcCCCe----EEEeChHHc-----cCccHHHHHHHHHHHHHHhhc---CcceEEEEcch
Confidence            78999999999999999998765442    445554322     234433333333333332222   23467888874

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=96.48  E-value=0.097  Score=46.49  Aligned_cols=37  Identities=35%  Similarity=0.341  Sum_probs=31.6

Q ss_pred             CEEEEEEccC-CCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            1 MALIVICGQP-SSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         1 M~LI~l~G~P-GSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      |++|.|.|+- |+||||++..|+-.|...  +..|+.+|-
T Consensus         1 M~~iai~s~kGGvG~TTltAnLA~aL~~~--G~~VlaID~   38 (243)
T PF06564_consen    1 MKVIAIVSPKGGVGKTTLTANLAWALARL--GESVLAIDL   38 (243)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHC--CCcEEEEeC
Confidence            9999999986 699999999999999875  567777763

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.48  E-value=0.017  Score=53.78  Aligned_cols=34  Identities=21%  Similarity=0.461  Sum_probs=27.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -++|.|.||+|||++|..++..+-..  +..|++++
T Consensus       185 ~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t  218 (329)
T PRK06835        185 NLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRT  218 (329)
T ss_pred             cEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEE
Confidence            47899999999999999999988654  45666655

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.46  E-value=0.0035  Score=52.77  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=23.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ..++++|++|+|||.+|+.|++.+.
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~   28 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLF   28 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4789999999999999999999997

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.46  E-value=0.0022  Score=59.52  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +-++|.|+||+||||+|+.+++.++.
T Consensus        52 ~~~ll~GppG~GKT~la~~ia~~l~~   77 (328)
T PRK00080         52 DHVLLYGPPGLGKTTLANIIANEMGV   77 (328)
T ss_pred             CcEEEECCCCccHHHHHHHHHHHhCC
Confidence            35889999999999999999999864

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=96.46  E-value=0.045  Score=54.94  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=23.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -++|+|++|+||||+|+.|++.+.+.
T Consensus        48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~   73 (598)
T PRK09111         48 AFMLTGVRGVGKTTTARILARALNYE   73 (598)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhCcC
Confidence            47899999999999999999999764

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=96.45  E-value=0.049  Score=54.37  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=23.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||.||||+|+.|++.+..
T Consensus        40 ayLf~Gp~G~GKTt~Ar~lAk~L~c   64 (563)
T PRK06647         40 AYIFSGPRGVGKTSSARAFARCLNC   64 (563)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhcc
Confidence            5899999999999999999999875

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.45  E-value=0.1  Score=52.60  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -++|+|+||+||||+|+.|++.+.+.
T Consensus        40 a~Lf~Gp~GvGKttlA~~lAk~L~c~   65 (620)
T PRK14954         40 GYIFSGLRGVGKTTAARVFAKAVNCQ   65 (620)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            37899999999999999999999763

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.44  E-value=0.02  Score=51.39  Aligned_cols=35  Identities=23%  Similarity=0.186  Sum_probs=26.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.||+||||++.+++..+-.. .+..|.+++
T Consensus        32 ~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS   66 (271)
T cd01122          32 LIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTIS   66 (271)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEE
Confidence            78999999999999999998765322 134565555

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.44  E-value=0.0045  Score=54.10  Aligned_cols=37  Identities=30%  Similarity=0.360  Sum_probs=28.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .++.|+|.||||||++|.+++...-..  +..+++++-+
T Consensus        24 ~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e   60 (225)
T PRK09361         24 TITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE   60 (225)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence            378999999999999999998766433  4567777644

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.44  E-value=0.0088  Score=60.04  Aligned_cols=26  Identities=27%  Similarity=0.586  Sum_probs=23.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+.+|||+||-||||+|+-+|++-+.
T Consensus       327 KilLL~GppGlGKTTLAHViAkqaGY  352 (877)
T KOG1969|consen  327 KILLLCGPPGLGKTTLAHVIAKQAGY  352 (877)
T ss_pred             ceEEeecCCCCChhHHHHHHHHhcCc
Confidence            37899999999999999999998754

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.44  E-value=0.0026  Score=57.99  Aligned_cols=26  Identities=27%  Similarity=0.448  Sum_probs=22.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -++|.|+||+||||+|+.+++.+...
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~   85 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRL   85 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            37899999999999999999887653

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.43  E-value=0.0024  Score=53.68  Aligned_cols=23  Identities=43%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +++|+|.||||||++|.+++...
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~   23 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAEL   23 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc
Confidence            57899999999999999998763

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.43  E-value=0.041  Score=51.47  Aligned_cols=39  Identities=23%  Similarity=0.235  Sum_probs=27.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc----ccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE----SEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~----~~~~~~v~~~~~~   40 (303)
                      .++.|+|.||||||++|.+++-....    .+.+..++++|.+
T Consensus       127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE  169 (344)
T PLN03187        127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE  169 (344)
T ss_pred             eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence            47789999999999999998743221    1123467777754

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.43  E-value=0.022  Score=48.16  Aligned_cols=104  Identities=14%  Similarity=0.028  Sum_probs=52.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      ++.|.|+.||||||+.+.|+-.+...   ...+.++...++...... .-+..++.   .+. .+...+....++|+|-+
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~q~~-~LSgGq~q---rv~-laral~~~p~lllLDEP   98 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGITPVYKPQYI-DLSGGELQ---RVA-IAAALLRNATFYLFDEP   98 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEEEEEEcccC-CCCHHHHH---HHH-HHHHHhcCCCEEEEECC
Confidence            68999999999999999988765321   122333322111100000 01112211   111 23334456789999975


Q ss_pred             C--CchHHHHHHHHHHHHc-CC-cEEEEEEecCHHH
Q 047717           83 N--SIKGYRYELWCLARAA-GI-RYCVLYCDLEEDH  114 (303)
Q Consensus        83 n--~~k~~R~~l~~~ak~~-~~-~~~vI~l~~~~e~  114 (303)
                      .  .-...+..+..+.+.. .. ...+|.+.-..+.
T Consensus        99 ts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~  134 (177)
T cd03222          99 SAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV  134 (177)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence            4  3344555555543332 11 1245555544443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=96.42  E-value=0.049  Score=51.93  Aligned_cols=26  Identities=38%  Similarity=0.579  Sum_probs=23.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -++|.|+||+||||+|+.+++.+.+.
T Consensus        38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         38 AWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            37899999999999999999988653

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.42  E-value=0.036  Score=56.80  Aligned_cols=39  Identities=18%  Similarity=0.342  Sum_probs=27.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS   41 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~   41 (303)
                      +|.|+|+.|+||||.+..|+..+....-...|.+++.+.
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt  225 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS  225 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc
Confidence            789999999999999999998773221123555555443

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.41  E-value=0.0026  Score=62.58  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+++|+|+|||||||..+.|++.++..
T Consensus        46 ~iLlLtGP~G~GKtttv~~La~elg~~   72 (519)
T PF03215_consen   46 RILLLTGPSGCGKTTTVKVLAKELGFE   72 (519)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            478999999999999999999999754

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.41  E-value=0.04  Score=50.90  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=27.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc----cCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES----EAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~----~~~~~v~~~~~~   40 (303)
                      .++.|+|.||||||++|.+++-.....    +.+..++++|.+
T Consensus        97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE  139 (313)
T TIGR02238        97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTE  139 (313)
T ss_pred             eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcC
Confidence            478899999999999999887432211    123467777744

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>cd03112 CobW_like The function of this protein family is unkown

Probab=96.41  E-value=0.0026  Score=52.67  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      |+++++|++||||||+.+.+.+..
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~   24 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQ   24 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhcc
Confidence            689999999999999999887654

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.41  E-value=0.055  Score=54.22  Aligned_cols=26  Identities=31%  Similarity=0.385  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|++|+||||+|+.|++.+.+.
T Consensus        40 ayLf~Gp~G~GKtt~A~~lak~l~c~   65 (576)
T PRK14965         40 AFLFTGARGVGKTSTARILAKALNCE   65 (576)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhcCC
Confidence            57899999999999999999998753

>cd00881 GTP_translation_factor GTP translation factor family

Probab=96.41  E-value=0.06  Score=44.77  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.4

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHc
Q 047717            4 IVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |++.|.+||||||+.+.|.....
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~   24 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTG   24 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcC
Confidence            78999999999999999977644

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.40  E-value=0.014  Score=51.02  Aligned_cols=124  Identities=17%  Similarity=0.180  Sum_probs=68.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC--CccCCCccccCCCchh--------hHHHH----------HH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE--ASFHLDRNQSYASMPA--------EKNLR----------GV   62 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~--~~~~~~~~~~y~~~~~--------e~~~r----------~~   62 (303)
                      -|+|+|+.|+||+|+.+.|.++++.. ++..| ....  ...+-.....|.-...        ....+          +.
T Consensus        39 ~ivl~gpsg~gk~tll~~l~ee~~~~-~~fsv-S~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGt  116 (231)
T KOG0707|consen   39 PIVLSGPSGVGKSTLLKRLREELGGM-FGFSV-SHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGT  116 (231)
T ss_pred             eEEEeCCCCcchhHHHHHHHHHcCCc-ceEEe-cCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCc
Confidence            48999999999999999999999752 11111 0000  0000000111211100        00011          11


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEe-cCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 047717           63 LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCD-LEEDHCRKWNKERHEKGEAAYDDKIFEDLV  139 (303)
Q Consensus        63 l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~-~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~  139 (303)
                      -..++++....+...|+|-  ..+|.     ..+++.....+.+|+. ++...+.+|+.+|+.    .+..+.+.++.
T Consensus       117 si~av~~~~~~gk~~ildI--d~qg~-----~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgt----e~~~~l~~r~~  183 (231)
T KOG0707|consen  117 SIAAVQRLMLSGKVCILDI--DLQGV-----QPIRATSLDAIYIFIKPPSIKILEERLRARGT----ETEESLLKRLK  183 (231)
T ss_pred             hHHHHHHHHhcCCcceeeh--hhcCc-----eeeecCCCceEEEEecCCcchhHHHHhhccCc----chHHHHHHHHH
Confidence            1235666667788888875  22221     1234446677888876 456678999998853    24556777776

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.38  E-value=0.047  Score=55.09  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +-++|+|+||+||||+|+.+++.+.+
T Consensus        39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c   64 (620)
T PRK14948         39 PAYLFTGPRGTGKTSSARILAKSLNC   64 (620)
T ss_pred             ceEEEECCCCCChHHHHHHHHHHhcC
Confidence            35789999999999999999999976

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=96.38  E-value=0.16  Score=49.73  Aligned_cols=144  Identities=16%  Similarity=0.130  Sum_probs=87.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~   81 (303)
                      ||++.|.-+|||.-..+.|.+.++..  +..|+.+...            +..|+ .+..|- .+-+.| ..|.+.|+|.
T Consensus       301 livfeG~DaAGKgg~I~rl~~~ldPr--g~~v~~~~~P------------t~~E~-~~~~lw-Rf~~~lP~~G~i~iFdR  364 (493)
T TIGR03708       301 VLVFEGWDAAGKGGAIRRVTEALDAR--QYRVVPIAAP------------TDEEK-AQHYLW-RFWRHIPRRGRITIFDR  364 (493)
T ss_pred             EEEEEcccCCCCcHHHHHHHhhcCCC--eeEEEeCCCc------------CHHHH-cCcHHH-HHHHhCCCCCeEEEEcC
Confidence            79999999999999999999988765  3344433311            11122 121222 233444 5789999998


Q ss_pred             CCCchH-------------HH--H----HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCH------HH
Q 047717           82 LNSIKG-------------YR--Y----ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDD------KI  134 (303)
Q Consensus        82 ~n~~k~-------------~R--~----~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~------e~  134 (303)
                      ..|..-             ++  |    .+....-+.|+.++.+|+.++.++-.+|+.+|..+....  +++      +.
T Consensus       365 SwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~WK~t~~D~~~r~~  444 (493)
T TIGR03708       365 SWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKRYKITDEDWRNREK  444 (493)
T ss_pred             CccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccCCcCCHHHHHHHHh
Confidence            776321             21  1    122223457888999999999999999999998754332  232      22


Q ss_pred             HHHHHHHhcCCCC-CCCCCCceeeeCCCC
Q 047717          135 FEDLVRRFEKPDR-RNRWDSPLFELCPYK  162 (303)
Q Consensus       135 ~~~l~~r~E~P~~-~~rwd~pl~~i~~~~  162 (303)
                      +++....|+.-.. .+.=.+|..+|.+++
T Consensus       445 w~~Y~~a~~~ml~~T~t~~APW~vI~a~d  473 (493)
T TIGR03708       445 WDAYEDAVNDMIDRTSTIIAPWTLVEAND  473 (493)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEEeCCC
Confidence            3333333333222 222346888888753

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.012  Score=58.08  Aligned_cols=24  Identities=33%  Similarity=0.744  Sum_probs=21.7

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|+|+||||||-+|+++|..-+.
T Consensus       548 vLL~GPPGCGKTLlAKAVANEag~  571 (802)
T KOG0733|consen  548 VLLCGPPGCGKTLLAKAVANEAGA  571 (802)
T ss_pred             eEEeCCCCccHHHHHHHHhhhccC
Confidence            799999999999999999987654

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.36  E-value=0.0048  Score=52.56  Aligned_cols=28  Identities=36%  Similarity=0.417  Sum_probs=24.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |-.|-+.|+||||||++..++.+.+...
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~   40 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDE   40 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhh
Confidence            4579999999999999999999988664

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.36  E-value=0.039  Score=55.71  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|++|+||||+|+.+++.+++.
T Consensus        40 AyLf~Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994         40 AYLFSGTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            37899999999999999999999863

>PRK03003 GTP-binding protein Der; Reviewed

Probab=96.35  E-value=0.02  Score=55.88  Aligned_cols=109  Identities=11%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc---cCCc--cEEE----ecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES---EAKE--TVRI----IDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~---~~~~--~v~~----~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L   71 (303)
                      ||.|+|.|.||+||||+.+.|...-...   ..+.  +.+.    .+...+.+.+..++....  ..+...+...+..++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHHHH
Confidence            6889999999999999999987532111   0111  1111    011111111111222111  111112222222222


Q ss_pred             --CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717           72 --SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE  111 (303)
Q Consensus        72 --~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~  111 (303)
                        ...-++|+|+.+.......++....+..+.++.+|.-.++
T Consensus       116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~D  157 (472)
T PRK03003        116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVD  157 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence              3456788999875433334555555666777777764444

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.33  E-value=0.0031  Score=51.75  Aligned_cols=21  Identities=33%  Similarity=0.378  Sum_probs=19.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~   24 (303)
                      |+|+|.+||||||+|..|.++
T Consensus        17 vLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          17 VLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHc
Confidence            789999999999999988765

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.32  E-value=0.027  Score=50.41  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|+|.||||||+++.+.+...-..  +.++++++
T Consensus        25 ~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs   58 (260)
T COG0467          25 VVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVS   58 (260)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEE
Confidence            78999999999999999988766443  45566655

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=96.32  E-value=0.055  Score=45.52  Aligned_cols=113  Identities=15%  Similarity=0.195  Sum_probs=62.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-------ccCCC-----ccccCCCchhhHHHH----------
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-------SFHLD-----RNQSYASMPAEKNLR----------   60 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-------~~~~~-----~~~~y~~~~~e~~~r----------   60 (303)
                      +|+|+|--+|||-|.|..|.+.++..  ...++.+++.       ..+..     ....|........++          
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~--~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp   78 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP   78 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccc--cceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence            58999999999999999998888642  1224555542       11111     112333221111111          


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717           61 GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        61 ~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R  122 (303)
                      +.+-..+...+. ..++||+++-....    +.-+...+|..+..|.+.++.++..+|.-..
T Consensus        79 ~~F~r~~~~~~~-~~v~iIsD~Rr~~d----v~~f~~~~g~~~~~VRV~AseetR~~Rgw~F  135 (182)
T TIGR01223        79 GFFCRKIVEGIS-QPIWLVSDTRRVSD----IQWFREAYGAVTQTVRVVALEQSRQQRGWVF  135 (182)
T ss_pred             cHHHHHHHhccC-CCEEEEeCCCcccH----HHHHHHHcCCceEEEEEecCHHHHHHHHHhc
Confidence            111122223333 35777777532211    1112244577888999999999988877544

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>COG5324 Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.093  Score=50.50  Aligned_cols=156  Identities=17%  Similarity=0.155  Sum_probs=84.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcC-CCCEEEEcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVS-KDNIIIVDS   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~-~~~~VIvD~   81 (303)
                      ||+=....|+||||.|+.|.+.|++.     ++--| .-.+-..         .+    .+..++..... ...+|++|-
T Consensus       376 ll~pia~igcgktt~ak~l~~lf~w~-----~vqnd-~lsgk~~---------~k----~~~kai~~~~r~~~~~v~~dr  436 (758)
T COG5324         376 LLVPIATIGCGKTTVAKILEKLFGWP-----VVQND-NLSGKGG---------PK----RFAKAIIEEFRNGHSVVFADR  436 (758)
T ss_pred             EEEEEEEeccCcccHHHHHHHHcCCc-----ccccC-CCCCCCc---------hh----HHHHHHHHHhccCceEEEEcc
Confidence            66677788999999999999999774     22222 1111111         11    12223333333 346788999


Q ss_pred             CCCchHHHHHHHHHHHHcCCcEEEEEE---ecC--HHHHHHHHHHhhhcC-CCCCCH------HHHHHHHHHhcCCCCCC
Q 047717           82 LNSIKGYRYELWCLARAAGIRYCVLYC---DLE--EDHCRKWNKERHEKG-EAAYDD------KIFEDLVRRFEKPDRRN  149 (303)
Q Consensus        82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l---~~~--~e~~~~R~~~R~~~~-~~~~~~------e~~~~l~~r~E~P~~~~  149 (303)
                      .|.+..+|.+|..-.-.+...+.+|-+   ..|  ++...+|..+|+..- .-.+++      .++.....+|.+-+.-+
T Consensus       437 nnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f~k~ykp~~~~~  516 (758)
T COG5324         437 NNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTFYKQYKPFDAGN  516 (758)
T ss_pred             cchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHHHHhcCCCCCCC
Confidence            998888887765411112222222222   111  466889999998631 001222      56777888998755444


Q ss_pred             CCCC---ceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          150 RWDS---PLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       150 rwd~---pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      .-|.   -.+.+++..    .+-+....|+..+-+
T Consensus       517 ~~d~~~d~~ield~~~----~sl~nar~i~n~~~k  547 (758)
T COG5324         517 KHDANYDDIIELDPLI----GSLENARRIVNYFKK  547 (758)
T ss_pred             Cccccccceeeccccc----chhhhHHHHHHHHHh
Confidence            4333   234444432    222334555555543

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.31  E-value=0.048  Score=50.22  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=26.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .|+|+|.+||||||+.+.|...+...   ..++.+++
T Consensus       146 ~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied  179 (308)
T TIGR02788       146 NIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIED  179 (308)
T ss_pred             EEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcC
Confidence            68999999999999999998877532   34455543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=96.31  E-value=0.0037  Score=51.55  Aligned_cols=27  Identities=33%  Similarity=0.391  Sum_probs=25.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |..|.|.|+-+|||||++++|+..|+.
T Consensus         8 ~K~VailG~ESsGKStLv~kLA~~fnt   34 (187)
T COG3172           8 VKTVAILGGESSGKSTLVNKLANIFNT   34 (187)
T ss_pred             heeeeeecCcccChHHHHHHHHHHhCC
Confidence            568999999999999999999999975

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.31  E-value=0.003  Score=60.12  Aligned_cols=24  Identities=29%  Similarity=0.616  Sum_probs=22.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|.|+||+|||++|+.++..++.
T Consensus       168 vLL~GppGtGKT~lAkaia~~~~~  191 (389)
T PRK03992        168 VLLYGPPGTGKTLLAKAVAHETNA  191 (389)
T ss_pred             eEEECCCCCChHHHHHHHHHHhCC
Confidence            889999999999999999998764

>PRK06851 hypothetical protein; Provisional

Probab=96.30  E-value=0.0059  Score=57.45  Aligned_cols=27  Identities=26%  Similarity=0.470  Sum_probs=24.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+++|+|.||+||||+.++|.+.+...
T Consensus        31 ~~~il~G~pGtGKStl~~~i~~~~~~~   57 (367)
T PRK06851         31 RIFILKGGPGTGKSTLMKKIGEEFLEK   57 (367)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            479999999999999999999998654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.30  E-value=0.0038  Score=48.39  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l   25 (303)
                      |+|.|.+||||||+.+.|....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999988644

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=96.29  E-value=0.0027  Score=55.48  Aligned_cols=22  Identities=41%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l   25 (303)
                      |+|.|.|||||||+.+.+.+..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            6899999999999999988874

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.28  E-value=0.021  Score=49.81  Aligned_cols=34  Identities=29%  Similarity=0.357  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH-ccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL-KESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l-~~~~~~~~v~~~~   38 (303)
                      +++|+|.||||||++|.+++... ...  +..+++++
T Consensus        21 ~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs   55 (226)
T PF06745_consen   21 VVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVS   55 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEE
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEE
Confidence            78999999999999999976443 321  23455554

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.27  E-value=0.0057  Score=54.91  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=25.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|+|.||+||||+|.+++...-..  +..+.+++
T Consensus        38 ~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis   71 (259)
T TIGR03878        38 VINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVT   71 (259)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEE
Confidence            78999999999999999987654322  34555555

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.27  E-value=0.0037  Score=48.35  Aligned_cols=20  Identities=30%  Similarity=0.320  Sum_probs=18.6

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      .++|.|++||||||+++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            68999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.25  E-value=0.0045  Score=57.88  Aligned_cols=34  Identities=26%  Similarity=0.559  Sum_probs=26.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .|+|+|.+||||||+.+.|...+..   ...++.++|
T Consensus       164 nilI~G~tGSGKTTll~aLl~~i~~---~~rivtiEd  197 (344)
T PRK13851        164 TMLLCGPTGSGKTTMSKTLISAIPP---QERLITIED  197 (344)
T ss_pred             eEEEECCCCccHHHHHHHHHcccCC---CCCEEEECC
Confidence            6999999999999999999988764   234455544

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.028  Score=55.19  Aligned_cols=26  Identities=27%  Similarity=0.486  Sum_probs=22.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -|+|.|+||+|||.+|++++..++..
T Consensus       278 giLl~GpPGtGKT~lAkava~~~~~~  303 (494)
T COG0464         278 GVLLYGPPGTGKTLLAKAVALESRSR  303 (494)
T ss_pred             eeEEECCCCCCHHHHHHHHHhhCCCe
Confidence            48999999999999999999976543

>TIGR00101 ureG urease accessory protein UreG

Probab=96.25  E-value=0.0046  Score=53.32  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=23.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ..|.|+|++||||||+.+.+...+..
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~l~~   27 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRALRQ   27 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence            46899999999999999999988754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.23  E-value=0.0029  Score=55.34  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=18.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La   22 (303)
                      .+++|+|.||+||||+|+.|+
T Consensus        13 ~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        13 NMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             cEEEEECCCCCCHHHHHHhcC
Confidence            369999999999999999874

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=96.22  E-value=0.092  Score=50.04  Aligned_cols=37  Identities=14%  Similarity=0.176  Sum_probs=30.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      -++|.|..|+|||.+.+++..+....+.+..++.+..
T Consensus       115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s  151 (408)
T COG0593         115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS  151 (408)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence            4789999999999999999998887665556665543

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.22  E-value=0.004  Score=59.68  Aligned_cols=26  Identities=38%  Similarity=0.496  Sum_probs=23.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -|+|.|+||+|||++|+.|++.++..
T Consensus       110 ~iLl~Gp~GtGKT~lAr~lA~~l~~p  135 (412)
T PRK05342        110 NILLIGPTGSGKTLLAQTLARILDVP  135 (412)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            38999999999999999999988653

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.22  E-value=0.0041  Score=48.30  Aligned_cols=20  Identities=35%  Similarity=0.587  Sum_probs=18.6

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.||+||||+.+.|..
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999874

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF13479 AAA_24: AAA domain

Probab=96.21  E-value=0.017  Score=50.25  Aligned_cols=19  Identities=47%  Similarity=0.697  Sum_probs=17.2

Q ss_pred             EEEEEccCCCCHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCL   21 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~L   21 (303)
                      -++|.|.||+||||+|..+
T Consensus         5 ~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    5 KILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             EEEEECCCCCCHHHHHHhC
Confidence            4899999999999999975

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.21  E-value=0.064  Score=44.45  Aligned_cols=107  Identities=12%  Similarity=0.130  Sum_probs=53.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-------CccccCCCchhhHHHHHHHHHHHHHhcCCCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-------DRNQSYASMPAEKNLRGVLRSEVDRSVSKDN   75 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-------~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~   75 (303)
                      ++.|.|+.||||||+.+.|+-.....   ...+.++......       .+...|...-+....+ .+ ..+...+..-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~q-rl-~laral~~~p~  102 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQ-MV-EIARALARNAR  102 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHH-HH-HHHHHHhcCCC
Confidence            68899999999999999998654321   2223333221110       0011121111111111 11 12223445668


Q ss_pred             EEEEcCCC--CchHHHHHHHHHHHHcC-CcEEEEEEecCHHH
Q 047717           76 IIIVDSLN--SIKGYRYELWCLARAAG-IRYCVLYCDLEEDH  114 (303)
Q Consensus        76 ~VIvD~~n--~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~  114 (303)
                      ++|+|-+.  .-...+..+..+.+... ....+|.+.-+.+.
T Consensus       103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~  144 (163)
T cd03216         103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE  144 (163)
T ss_pred             EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            99999765  34555666666554331 12235555444443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.21  E-value=0.042  Score=51.75  Aligned_cols=27  Identities=26%  Similarity=0.548  Sum_probs=24.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +.++|+|+||+||||+|+.+++.+...
T Consensus        40 ~~~L~~G~~G~GKt~~a~~la~~l~~~   66 (367)
T PRK14970         40 QALLFCGPRGVGKTTCARILARKINQP   66 (367)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            368999999999999999999998753

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.21  E-value=0.0064  Score=42.13  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.+|+|..||||||+-.++.-.+
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999887655

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.20  E-value=0.0068  Score=52.06  Aligned_cols=34  Identities=29%  Similarity=0.376  Sum_probs=26.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +.+|.|+||+||||+.+.+.+.+...  +..++.+.
T Consensus        20 ~~~l~G~aGtGKT~~l~~~~~~~~~~--g~~v~~~a   53 (196)
T PF13604_consen   20 VSVLQGPAGTGKTTLLKALAEALEAA--GKRVIGLA   53 (196)
T ss_dssp             EEEEEESTTSTHHHHHHHHHHHHHHT--T--EEEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHhC--CCeEEEEC
Confidence            68899999999999999999988764  34555543

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=96.20  E-value=0.039  Score=51.78  Aligned_cols=24  Identities=38%  Similarity=0.577  Sum_probs=22.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      .+|+|.|.||||||.+|-.|+..+
T Consensus         2 ~v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    2 QVILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             eEEEEEecCCcCHHHHHHHHHHHh
Confidence            479999999999999999999998

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.18  E-value=0.0037  Score=58.91  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+|||++|+.++..++.
T Consensus       158 gvLL~GppGtGKT~lakaia~~l~~  182 (364)
T TIGR01242       158 GVLLYGPPGTGKTLLAKAVAHETNA  182 (364)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCC
Confidence            3889999999999999999998764

Many proteins may score above the trusted cutoff because an internal

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=96.18  E-value=0.081  Score=52.32  Aligned_cols=25  Identities=32%  Similarity=0.343  Sum_probs=22.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++++|+||+||||+|+.|++.+..
T Consensus        38 ayLf~Gp~G~GKTt~Ar~LAk~L~c   62 (535)
T PRK08451         38 AYLFSGLRGSGKTSSARIFARALVC   62 (535)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcC
Confidence            6799999999999999999999854

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=96.17  E-value=0.0075  Score=60.51  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=27.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAK   31 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~   31 (303)
                      |++|-|+|.+||||||+...|..+|...++.
T Consensus        10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~r   40 (597)
T PRK14491         10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLR   40 (597)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHHhCCce
Confidence            6899999999999999999999999876433

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=96.17  E-value=0.085  Score=53.85  Aligned_cols=26  Identities=31%  Similarity=0.396  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++++|+||+||||+|+.+++.+.+.
T Consensus        42 AYLF~GP~GtGKTt~AriLAk~LnC~   67 (725)
T PRK07133         42 AYLFSGPRGTGKTSVAKIFANALNCS   67 (725)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhccc
Confidence            57899999999999999999998763

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=96.16  E-value=0.069  Score=51.91  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|.|+||+||||+|+.+++.+..
T Consensus        41 a~Lf~Gp~G~GKtt~A~~lAk~l~c   65 (451)
T PRK06305         41 AYLFSGIRGTGKTTLARIFAKALNC   65 (451)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            5789999999999999999999865

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.15  E-value=0.004  Score=59.56  Aligned_cols=25  Identities=40%  Similarity=0.514  Sum_probs=22.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+|||++|+.|++.++.
T Consensus       118 ~iLL~GP~GsGKT~lAraLA~~l~~  142 (413)
T TIGR00382       118 NILLIGPTGSGKTLLAQTLARILNV  142 (413)
T ss_pred             eEEEECCCCcCHHHHHHHHHHhcCC
Confidence            4899999999999999999988764

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.15  E-value=0.0049  Score=53.27  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=18.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +.+|.|+||+||||+...+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            47899999999998877777776

>TIGR00665 DnaB replicative DNA helicase

Probab=96.15  E-value=0.062  Score=51.84  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=26.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.||+|||+++.+++...... .+..|.+++
T Consensus       197 l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~S  231 (434)
T TIGR00665       197 LIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFS  231 (434)
T ss_pred             EEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEe
Confidence            89999999999999999998765431 134566655

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.14  E-value=0.0053  Score=55.84  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=23.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+|.|.|.|||||||+.+.|...+..
T Consensus       105 ~~v~l~G~pGsGKTTLl~~l~~~l~~  130 (290)
T PRK10463        105 LVLNLVSSPGSGKTTLLTETLMRLKD  130 (290)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            47899999999999999999988754

>PHA03138 thymidine kinase; Provisional

Probab=96.13  E-value=0.1  Score=48.43  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=25.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      -|.|.|..|+||||.++.+.+.+...  +..++.+.|
T Consensus        14 riYleG~~GvGKTT~~~~~l~~~~~~--~~~vl~vpE   48 (340)
T PHA03138         14 RIYLDGAFGIGKTTAAEAFLHGFAIN--PNRIFFIGE   48 (340)
T ss_pred             EEEEECCCCcCHHhHHHHHHHhhhcC--CCceEEeeC
Confidence            58899999999999999888776542  122555554

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.10  E-value=0.0036  Score=54.01  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=19.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|.|+||+|||++|+.|...|..
T Consensus        25 lLl~GppGtGKTmlA~~l~~lLP~   48 (206)
T PF01078_consen   25 LLLIGPPGTGKTMLARRLPSLLPP   48 (206)
T ss_dssp             EEEES-CCCTHHHHHHHHHHCS--
T ss_pred             eEEECCCCCCHHHHHHHHHHhCCC
Confidence            789999999999999999988764

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=96.09  E-value=0.0082  Score=53.76  Aligned_cols=38  Identities=34%  Similarity=0.387  Sum_probs=33.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |..|.++|--|+||||+|-.|+..|...  +..|.++|-+
T Consensus         1 m~~iav~~KGGvGKTT~~~nLA~~La~~--G~kVlliD~D   38 (270)
T cd02040           1 MRQIAIYGKGGIGKSTTTQNLSAALAEM--GKKVMIVGCD   38 (270)
T ss_pred             CcEEEEEeCCcCCHHHHHHHHHHHHHhC--CCeEEEEEcC
Confidence            7889999999999999999999999764  6788888754

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.09  E-value=0.11  Score=46.86  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=27.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +.|+|+|++|+||||++..|+..+...  +..+.+++-
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~  111 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITT  111 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEec
Confidence            478999999999999999999887543  234444443

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.09  E-value=0.0046  Score=51.65  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .|.|+|++||||||+-++++....
T Consensus        31 ~iaitGPSG~GKStllk~va~Lis   54 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLIS   54 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhccC
Confidence            589999999999999999886543

>COG0218 Predicted GTPase [General function prediction only]

Probab=96.07  E-value=0.065  Score=45.93  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc--cc--cCCccE----EEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcC-
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK--ES--EAKETV----RIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVS-   72 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~--~~--~~~~~v----~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~-   72 (303)
                      |=|++.|-+-+||||+.+.|..+-+  ..  ..|.+-    ..+++. +.+-+-.+|.-...-+..++.+...+.++|. 
T Consensus        25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~  103 (200)
T COG0218          25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEK  103 (200)
T ss_pred             cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhh
Confidence            5589999999999999999876332  11  011111    112221 1111112333333223444455555555554 


Q ss_pred             ----CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717           73 ----KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE  111 (303)
Q Consensus        73 ----~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~  111 (303)
                          ++-++++|+....+..-.+++.++...+.++.++.--++
T Consensus       104 R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~D  146 (200)
T COG0218         104 RANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKAD  146 (200)
T ss_pred             chhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccc
Confidence                346889999988888777889999999999999876554

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.06  E-value=0.012  Score=55.17  Aligned_cols=25  Identities=40%  Similarity=0.655  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .|+|.|+||+|||.+|-.+++.|+.
T Consensus        52 ~iLiaGppGtGKTAlA~~ia~eLG~   76 (398)
T PF06068_consen   52 AILIAGPPGTGKTALAMAIAKELGE   76 (398)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred             EEEEeCCCCCCchHHHHHHHHHhCC
Confidence            5899999999999999999999985

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG4240 Predicted kinase [General function prediction only]

Probab=96.04  E-value=0.0067  Score=52.94  Aligned_cols=27  Identities=26%  Similarity=0.374  Sum_probs=24.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      ++.|+|+-||||||+|..|...|...+
T Consensus        52 i~gisGpQGSGKStls~~i~~~L~~kg   78 (300)
T COG4240          52 IVGISGPQGSGKSTLSALIVRLLAAKG   78 (300)
T ss_pred             EEEeecCCCCchhhHHHHHHHHHHHhc
Confidence            678999999999999999999998765

>PRK05636 replicative DNA helicase; Provisional

Probab=96.03  E-value=0.062  Score=52.94  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=26.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      ||+|.|.||+|||++|-.++...... .+..+.+++
T Consensus       267 Liiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fS  301 (505)
T PRK05636        267 MIIVAARPGVGKSTLALDFMRSASIK-HNKASVIFS  301 (505)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEE
Confidence            89999999999999999998765322 134565555

>cd01894 EngA1 EngA1 subfamily

Probab=96.03  E-value=0.035  Score=44.64  Aligned_cols=20  Identities=35%  Similarity=0.474  Sum_probs=17.5

Q ss_pred             EEEccCCCCHHHHHHHHHHH
Q 047717            5 VICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         5 ~l~G~PGSGKSTlA~~La~~   24 (303)
                      ++.|.+|+||||+.+.|...
T Consensus         1 ~l~G~~~~GKssl~~~l~~~   20 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGR   20 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCC
Confidence            47899999999999998754

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00089 era GTPase Era; Reviewed

Probab=96.03  E-value=0.057  Score=49.11  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .|+|.|.|||||||+.+.|..
T Consensus         7 ~V~iiG~pn~GKSTLin~L~g   27 (292)
T PRK00089          7 FVAIVGRPNVGKSTLLNALVG   27 (292)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999998753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.03  E-value=0.005  Score=49.15  Aligned_cols=24  Identities=38%  Similarity=0.484  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|+|.+||||||+.+.|+....
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             EEEEEccCCCccccceeeeccccc
Confidence            689999999999999999876654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.02  E-value=0.005  Score=58.77  Aligned_cols=25  Identities=24%  Similarity=0.497  Sum_probs=22.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+|||++|+.++..++.
T Consensus       181 gvLL~GppGTGKT~LAkalA~~l~~  205 (398)
T PTZ00454        181 GVLLYGPPGTGKTMLAKAVAHHTTA  205 (398)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4789999999999999999998754

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=96.01  E-value=0.088  Score=52.58  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=23.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++++|++|+||||+|+.+++.+.+.
T Consensus        40 ayLf~Gp~GtGKTt~Ak~lAkal~c~   65 (559)
T PRK05563         40 AYLFSGPRGTGKTSAAKIFAKAVNCL   65 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            47899999999999999999998754

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.01  E-value=0.15  Score=50.08  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+|+.+++.+.+
T Consensus        40 ayLf~Gp~G~GKTtlAr~lAk~L~c   64 (486)
T PRK14953         40 AYIFAGPRGTGKTTIARILAKVLNC   64 (486)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            5789999999999999999999875

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=96.01  E-value=0.0053  Score=50.34  Aligned_cols=23  Identities=13%  Similarity=0.327  Sum_probs=20.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      |+|+|.|.+||||||+.+.|...
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~   23 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKT   23 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhc
Confidence            68999999999999999998753

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.01  E-value=0.0055  Score=58.96  Aligned_cols=25  Identities=36%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|++.|+||+||||+|+.|+..+..
T Consensus       196 ~iil~GppGtGKT~lA~~la~~l~~  220 (459)
T PRK11331        196 NIILQGPPGVGKTFVARRLAYLLTG  220 (459)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4789999999999999999998853

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=96.00  E-value=0.062  Score=45.48  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=27.3

Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE  111 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~  111 (303)
                      ...-++|+|+.......-.+....++..+.+..++.=.++
T Consensus        94 ~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D  133 (188)
T PF00009_consen   94 ADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMD  133 (188)
T ss_dssp             SSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCT
T ss_pred             cccceeeeecccccccccccccccccccccceEEeeeecc
Confidence            3556789999877777777777788889998544443333

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.99  E-value=0.042  Score=55.30  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=23.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|+|++|+||||+|+.|++.+++.
T Consensus        40 a~Lf~Gp~GvGKTtlAr~lAk~LnC~   65 (618)
T PRK14951         40 AYLFTGTRGVGKTTVSRILAKSLNCQ   65 (618)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            57999999999999999999999863

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=95.97  E-value=0.085  Score=44.98  Aligned_cols=20  Identities=25%  Similarity=0.524  Sum_probs=18.4

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.|||||||+.+.|..
T Consensus         3 i~lvG~~g~GKSsl~N~ilg   22 (196)
T cd01852           3 LVLVGKTGAGKSATGNTILG   22 (196)
T ss_pred             EEEECCCCCCHHHHHHHhhC
Confidence            78999999999999999863

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=95.96  E-value=0.0056  Score=56.70  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=22.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ||+.+|+|+-||||||+.+.|.+.
T Consensus         4 ipv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             cCEEEEEECCCCCHHHHHHHHHhc
Confidence            589999999999999999998765

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.19  Score=47.47  Aligned_cols=139  Identities=19%  Similarity=0.306  Sum_probs=68.5

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC--------Cc---cccCCCchhhHHHHHHHHHHHHHhcC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL--------DR---NQSYASMPAEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~--------~~---~~~y~~~~~e~~~r~~l~~~v~~~L~   72 (303)
                      +++.|.||+|||+.++.+.+++.....+..++.++-....-        ..   ..........+.+. .+...+.. ..
T Consensus        45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~-~l~~~~~~-~~  122 (366)
T COG1474          45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILK-RLYDNLSK-KG  122 (366)
T ss_pred             EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHH-HHHHHHHh-cC
Confidence            78899999999999999999997653333344444211100        00   00000011111222 23222222 33


Q ss_pred             CCCEEEEcCCCCchHHH-HHHHHHHHHc---CCcEEEEEEecCHHHHHHHHHHhhhc----C---CCCCCH-HHHHHHHH
Q 047717           73 KDNIIIVDSLNSIKGYR-YELWCLARAA---GIRYCVLYCDLEEDHCRKWNKERHEK----G---EAAYDD-KIFEDLVR  140 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R-~~l~~~ak~~---~~~~~vI~l~~~~e~~~~R~~~R~~~----~---~~~~~~-e~~~~l~~  140 (303)
                      ..-+||+|-.+..-... .-+|.+.+..   ...+.+|.+..+... ...+..|-..    .   -.+|+. ++.+-+.+
T Consensus       123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~-~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~  201 (366)
T COG1474         123 KTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF-LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRE  201 (366)
T ss_pred             CeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH-HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHH
Confidence            45678888766443221 3444444433   233455555555543 4444444321    1   135665 44455566


Q ss_pred             HhcCC
Q 047717          141 RFEKP  145 (303)
Q Consensus       141 r~E~P  145 (303)
                      |-+.-
T Consensus       202 R~~~~  206 (366)
T COG1474         202 RVEEG  206 (366)
T ss_pred             HHHhh
Confidence            76653

>PRK09169 hypothetical protein; Validated

Probab=95.95  E-value=0.0095  Score=66.11  Aligned_cols=108  Identities=8%  Similarity=-0.106  Sum_probs=60.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      -|+|.|++|+||||+++.|+..++...++.+..+....+..+  ..+|...   ...|+.-...+...+. ...||-.+.
T Consensus      2112 aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI--~rIFa~e---G~FRe~Eaa~V~Dllr-~~vVLSTGG 2185 (2316)
T PRK09169       2112 ARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKI--ARIQALR---GLSPEQAAARVRDALR-WEVVLPAEG 2185 (2316)
T ss_pred             ccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCH--HHHHHhc---CchHHHHHHHHHHHhc-CCeEEeCCC
Confidence            478999999999999999999998754333322221111111  1111110   0222222223434443 444554443


Q ss_pred             CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      . ... ..+.+...+..|.   +||+..+.++..+|...
T Consensus      2186 G-av~-~~enr~~L~~~Gl---vV~L~an~~tl~~Rty~ 2219 (2316)
T PRK09169       2186 F-GAA-VEQARQALGAKGL---RVMRINNGFAAPDTTYA 2219 (2316)
T ss_pred             C-ccc-CHHHHHHHHHCCE---EEEEECCHHHHHHHhcc
Confidence            3 222 2233334456666   99999999998888854

>PRK10646 ADP-binding protein; Provisional

Probab=95.95  E-value=0.0074  Score=49.73  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=23.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|+|.|--||||||+++.|++.++.
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            7999999999999999999999975

>PRK06851 hypothetical protein; Provisional

Probab=95.95  E-value=0.0091  Score=56.20  Aligned_cols=28  Identities=29%  Similarity=0.382  Sum_probs=25.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      .+++|.|.||+||||+.+.+++.+...+
T Consensus       215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G  242 (367)
T PRK06851        215 NRYFLKGRPGTGKSTMLKKIAKAAEERG  242 (367)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999987664

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=95.94  E-value=0.14  Score=47.54  Aligned_cols=26  Identities=31%  Similarity=0.282  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -++++|++|+||+|+|..+++.+.+.
T Consensus        24 a~Lf~G~~G~GK~~~A~~~A~~llC~   49 (328)
T PRK05707         24 AYLLHGPAGIGKRALAERLAAALLCE   49 (328)
T ss_pred             eeeeECCCCCCHHHHHHHHHHHHcCC
Confidence            47899999999999999999999763

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=95.93  E-value=0.026  Score=48.62  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      |-|+|.|++|||||++...|...
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~   23 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTG   23 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Confidence            46899999999999999988653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK08006 replicative DNA helicase; Provisional

Probab=95.93  E-value=0.091  Score=51.34  Aligned_cols=36  Identities=31%  Similarity=0.375  Sum_probs=27.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      ||+|.|.||.|||++|-.++...... -+..|.+++-
T Consensus       226 LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSl  261 (471)
T PRK08006        226 LIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSL  261 (471)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEec
Confidence            89999999999999999998775421 1456666653

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=95.91  E-value=0.0077  Score=49.17  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|+|.|-=||||||+++.|++.++-
T Consensus        27 Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          27 VVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             EEEEEcCCcCChHHHHHHHHHHcCC
Confidence            7999999999999999999999984

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=95.90  E-value=0.0064  Score=58.66  Aligned_cols=25  Identities=28%  Similarity=0.547  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+|||++|+.++..+..
T Consensus       219 gVLL~GPPGTGKT~LAraIA~el~~  243 (438)
T PTZ00361        219 GVILYGPPGTGKTLLAKAVANETSA  243 (438)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCC
Confidence            4789999999999999999998764

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=95.90  E-value=0.013  Score=53.65  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=22.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++|+|+|+.|||||.+|-.|+++.
T Consensus         5 ~ii~I~GpTasGKS~LAl~LA~~~   28 (300)
T PRK14729          5 KIVFIFGPTAVGKSNILFHFPKGK   28 (300)
T ss_pred             cEEEEECCCccCHHHHHHHHHHhC
Confidence            589999999999999999999984

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.89  E-value=0.0096  Score=56.46  Aligned_cols=37  Identities=27%  Similarity=0.380  Sum_probs=27.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +.++|+|+||+|||++++.+.+.+.....+..++.++
T Consensus        56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in   92 (394)
T PRK00411         56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN   92 (394)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            4578999999999999999999886532223444444

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=95.88  E-value=0.011  Score=51.71  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      .++.|+|.||||||++|.+++-..
T Consensus        20 ~i~~i~G~~GsGKT~l~~~l~~~~   43 (235)
T cd01123          20 SITEIFGEFGSGKTQLCHQLAVTV   43 (235)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHe
Confidence            378999999999999999998553

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=95.87  E-value=0.14  Score=43.68  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=19.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         3 kI~i~G~~g~GKSSLin~L~g   23 (197)
T cd04104           3 NIAVTGESGAGKSSFINALRG   23 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999875

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK10436 hypothetical protein; Provisional

Probab=95.85  E-value=0.058  Score=52.50  Aligned_cols=74  Identities=15%  Similarity=0.218  Sum_probs=41.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      +|+++|+.||||||....+.+++...  +..++.+.|. .+.+.  .........+. ...+...++..|+.+..||+=|
T Consensus       220 liLvtGpTGSGKTTtL~a~l~~~~~~--~~~i~TiEDPvE~~l~--gi~Q~~v~~~~-g~~f~~~lr~~LR~dPDvI~vG  294 (462)
T PRK10436        220 LILVTGPTGSGKTVTLYSALQTLNTA--QINICSVEDPVEIPLA--GINQTQIHPKA-GLTFQRVLRALLRQDPDVIMVG  294 (462)
T ss_pred             eEEEECCCCCChHHHHHHHHHhhCCC--CCEEEEecCCccccCC--CcceEeeCCcc-CcCHHHHHHHHhcCCCCEEEEC
Confidence            79999999999999887776766543  3445555542 22221  01100000000 0023345666777777777666

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=95.85  E-value=0.007  Score=48.19  Aligned_cols=22  Identities=41%  Similarity=0.495  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|++.|.+||||||+...|...
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~   24 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGN   24 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999987643

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.80  E-value=0.0079  Score=52.74  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ++.|.|++||||||+-+.|.-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999987643

>PRK10536 hypothetical protein; Provisional

Probab=95.80  E-value=0.038  Score=49.41  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ++++++|.+|+|||++|..++..
T Consensus        75 ~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998874

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=95.80  E-value=0.0079  Score=49.21  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |++.|.|||||||+.+.+..
T Consensus         3 i~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        3 LVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998864

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK06321 replicative DNA helicase; Provisional

Probab=95.79  E-value=0.098  Score=51.10  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=27.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      ||+|.|.||.|||++|-.++...... .+..|.+++
T Consensus       228 LiiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fS  262 (472)
T PRK06321        228 LMILAARPAMGKTALALNIAENFCFQ-NRLPVGIFS  262 (472)
T ss_pred             EEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEe
Confidence            89999999999999999998876321 134566655

>PHA02244 ATPase-like protein

Probab=95.78  E-value=0.0082  Score=56.37  Aligned_cols=25  Identities=36%  Similarity=0.441  Sum_probs=22.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|+||+|||++|+.|+..++..
T Consensus       122 VLL~GppGtGKTtLA~aLA~~lg~p  146 (383)
T PHA02244        122 VFLKGGAGSGKNHIAEQIAEALDLD  146 (383)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC
Confidence            6789999999999999999987643

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=95.77  E-value=0.11  Score=49.90  Aligned_cols=36  Identities=33%  Similarity=0.371  Sum_probs=27.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      |++|.|.||+|||++|-.++...... .+..|.+++-
T Consensus       196 liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSl  231 (421)
T TIGR03600       196 LIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSL  231 (421)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEEC
Confidence            89999999999999999999766421 1456766663

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=95.77  E-value=0.0075  Score=54.38  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      .+|+|.|++|+||||+|.++++..
T Consensus        20 ~~v~I~G~~G~GKT~LA~~~~~~~   43 (287)
T PF00931_consen   20 RVVAIVGMGGIGKTTLARQVARDL   43 (287)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHCHH
T ss_pred             EEEEEEcCCcCCcceeeeeccccc
Confidence            589999999999999999998773

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.1  Score=47.56  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=22.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      =|+|.|+||.|||.+|++++..-+.
T Consensus       168 giLLyGPPGTGKSYLAKAVATEAnS  192 (439)
T KOG0739|consen  168 GILLYGPPGTGKSYLAKAVATEANS  192 (439)
T ss_pred             eEEEeCCCCCcHHHHHHHHHhhcCC
Confidence            4899999999999999999987664

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=95.75  E-value=0.008  Score=56.23  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=22.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ||+.+|+|+.||||||+.+.|.+.
T Consensus         4 ipv~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         4 IPVTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             cCEEEEEECCCCCHHHHHHHHHhc
Confidence            689999999999999999998764

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PHA03133 thymidine kinase; Provisional

Probab=95.75  E-value=0.2  Score=46.78  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=27.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .|.|.|+.|.||||.++.+...++..   .+++.+.|.
T Consensus        42 rvYlDG~~GvGKTTt~~~l~~a~~~~---~~vl~~pEP   76 (368)
T PHA03133         42 RIYVDGPHGLGKTTTAAALAAALGRR---DDIEYVPEP   76 (368)
T ss_pred             EEEEeCCCcCCHHHHHHHHHHhhCCC---CCeEEecCc
Confidence            58999999999999999998887643   346666654

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=95.74  E-value=0.055  Score=44.79  Aligned_cols=98  Identities=24%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc--cCCccEEE------ecCCccCC-CccccCCC---chhhHHHHHHHHHHHHHhc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES--EAKETVRI------IDEASFHL-DRNQSYAS---MPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~--~~~~~v~~------~~~~~~~~-~~~~~y~~---~~~e~~~r~~l~~~v~~~L   71 (303)
                      |.+.|.|.+||||+-++|...-...  +.+.++..      ..+..+.+ +-.+.|+-   +..|+..+..+.    ..-
T Consensus         3 ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~----~~~   78 (156)
T PF02421_consen    3 IALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL----SEK   78 (156)
T ss_dssp             EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH----HTS
T ss_pred             EEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh----hcC
Confidence            7899999999999999987554221  12222211      11111111 12234442   233444343222    111


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEE
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLY  107 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~  107 (303)
                      ...-++|+|+++.-+. -|- .....+.+.|..++.
T Consensus        79 ~D~ii~VvDa~~l~r~-l~l-~~ql~e~g~P~vvvl  112 (156)
T PF02421_consen   79 PDLIIVVVDATNLERN-LYL-TLQLLELGIPVVVVL  112 (156)
T ss_dssp             SSEEEEEEEGGGHHHH-HHH-HHHHHHTTSSEEEEE
T ss_pred             CCEEEEECCCCCHHHH-HHH-HHHHHHcCCCEEEEE
Confidence            2335788999875433 232 233467788866654

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=95.74  E-value=0.047  Score=53.51  Aligned_cols=35  Identities=17%  Similarity=0.396  Sum_probs=26.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +|+++|++||||||....+...+...  +..++.+.|
T Consensus       244 lilitGptGSGKTTtL~a~L~~l~~~--~~~iiTiED  278 (486)
T TIGR02533       244 IILVTGPTGSGKTTTLYAALSRLNTP--ERNILTVED  278 (486)
T ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCC--CCcEEEEcC
Confidence            79999999999999999877776543  334555554

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	1e-60
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	1e-10
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	2e-09
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	1e-06
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	3e-05
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	1e-04
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	2e-04
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	3e-04

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score =  192 bits (490), Expect = 1e-60
 Identities = 57/300 (19%), Positives = 115/300 (38%), Gaps = 49/300 (16%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           + LI++ G P  GKS      ++ L +  +K  + +I   S  +  +        E+ ++
Sbjct: 4   IMLIILTGLPGVGKS----TFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIK 59

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
                 +D    K+  +IVD  N     R +L  +A+     Y ++Y     D   + N 
Sbjct: 60  KSTYRLIDS-ALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNI 118

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180
           ER EK      +++ + +  +F++P ++ +WD P   +   KD   N      +    L 
Sbjct: 119 ERGEK----IPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFN------EIAKKLI 168

Query: 181 KKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240
           +K        K +      +  +    N   ++D+ T+++++  ++++            
Sbjct: 169 EK-------SKEIPKFYVLEENKNKNNNISDKIDKETRKIVSEYIKSKK----------- 210

Query: 241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRELE 300
                          + E+  LR+ F+K   +          DAD   + F D LN  LE
Sbjct: 211 ----------LDKDKIKEVVELRKEFLKKIKKM------EEVDADRVLKEFKDLLNSYLE 254

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 27/196 (13%), Positives = 58/196 (29%), Gaps = 21/196 (10%)

Query: 2   ALIVICGQPSSGKSLAATCLAEAL------KESEAKETVRIIDEASFHLDRNQSYASMPA 55
           ALI++ G P++GK+  +  LA  L      K++  +     +  +     R     ++  
Sbjct: 6   ALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMM 65

Query: 56  EKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHC 115
                  L       +     +I++S   +      +  L   A      + C    D  
Sbjct: 66  -------LYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVL 118

Query: 116 RKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRN--RWDSPLFELCPYKDAIENSSAA 171
            +    R  +G     + D      +                PL  +    D        
Sbjct: 119 VERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTV----DTTFPEQID 174

Query: 172 ILDAVAYLTKKVDSKS 187
           +   V ++ + + S +
Sbjct: 175 MNAIVQWVRQHLQSGT 190

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 16/151 (10%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRI----IDEASFHLDRNQSYASMPA-EK 57
           +I+  G P SGKS   T  A      +      I      ++    +    Y      E 
Sbjct: 4   IILTIGCPGSGKS---T-WAREFIA-KNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEG 58

Query: 58  NLRGVLRSEVDRSVSK---DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDH 114
            + G+        +        +I+   N     R      A+  G +      D+    
Sbjct: 59  IVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTE 118

Query: 115 CRKWNKERHEKGEAAYDDKIFEDLVRRFEKP 145
             K N +R  K        +   + +   + 
Sbjct: 119 LVKRNSKRGTKA---VPIDVLRSMYKSMREY 146

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 26/190 (13%), Positives = 53/190 (27%), Gaps = 16/190 (8%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRI----IDEASFHLDRNQSYASMPA-EK 57
           +I+  G P SGKS      A      +      I      ++    +    Y      E 
Sbjct: 4   IILTIGCPGSGKS----TWAREFIA-KNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEG 58

Query: 58  NLRGVLRSEVDRSVSK---DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDH 114
            + G+        +        +I+   N     R      A+  G +      D+    
Sbjct: 59  IVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTE 118

Query: 115 CRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILD 174
             K N +R  K        +   + +   +      ++    +       ++ + A +  
Sbjct: 119 LVKRNSKRGTKA---VPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNG 175

Query: 175 AVAYLTKKVD 184
              Y  +K D
Sbjct: 176 RGPYDLEKCD 185

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 47/340 (13%), Positives = 103/340 (30%), Gaps = 83/340 (24%)

Query: 4   IVICGQPSSGKS-LAA-TCLAEALKE--------------SEAKETVRIIDEASFHLDRN 47
           ++I G   SGK+ +A   CL+  ++               +  +  + ++ +  + +D N
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 48  QS-----YASMPAEKN-LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYR-YELWC----LA 96
            +      +++    + ++  LR  +     ++ ++++ ++ + K +  + L C      
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 97  RAAGIRYCV---LYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEK--P---- 145
           R   +   +       +  DH         E       Y D   +DL R      P    
Sbjct: 273 RFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 146 -------DRRNRWDSPLFELCPYKD-AIENSSAAILDAVAYLTKKVDSKSR--------- 188
                  D    WD        +K    +  +  I  ++  L    + +           
Sbjct: 332 IIAESIRDGLATWD-------NWKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPP 383

Query: 189 DVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKAL--GGPMNGISLGQGLP 246
              I    +           SL   D    +V+  V +    +L    P         +P
Sbjct: 384 SAHIPTILL-----------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---SIP 429

Query: 247 NISISRSVGLPELRRLRRTFI---KLTGQTSLSGPPPPSD 283
           +I +   V L     L R+ +    +          PP  
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 41/260 (15%), Positives = 80/260 (30%), Gaps = 74/260 (28%)

Query: 56  EKNLRGVLRS-EVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDH 114
           +   + +L   E+D         I+ S +++ G     W L               +E+ 
Sbjct: 39  QDMPKSILSKEEIDH--------IIMSKDAVSGTLRLFWTL------------LSKQEEM 78

Query: 115 CRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILD 174
            +K+ +E        Y    F  L+   +   R+    + ++     +D + N +     
Sbjct: 79  VQKFVEEVLRIN---YK---F--LMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQV--- 125

Query: 175 AVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVIN----------AV 224
                 K       +V  LQP +  +        +L EL  A   +I+          A+
Sbjct: 126 ----FAK------YNVSRLQPYLKLR-------QALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 225 VEAQSKALGGPMNG----ISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPP 280
               S  +   M+     ++L     N +   +V L  L++L           S      
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLK----NCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 281 PSDADSAKRMFVDYLNRELE 300
                S +      L R L+
Sbjct: 224 KLRIHSIQ----AELRRLLK 239

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Length = 416

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 23/150 (15%), Positives = 41/150 (27%), Gaps = 24/150 (16%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
             ++V  G P +GKS        +             D        +        +  LR
Sbjct: 258 PEVVVAVGFPGAGKSTFIQEHLVSAGY-----VHVNRDTL-----GSWQRCVSSCQAALR 307

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
                   + V      ++D+ N     R      A+ AG+           +  R  N+
Sbjct: 308 Q------GKRV------VIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNR 355

Query: 121 ERHEKGEAAYD--DKIFEDLVRRFEKPDRR 148
            R     +     D +     ++FE P   
Sbjct: 356 FREMTDPSHAPVSDMVMFSYRKQFEPPTLA 385

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 31/155 (20%), Positives = 47/155 (30%), Gaps = 15/155 (9%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKES----------EAKETVRIIDEASFHLDRNQSYAS 52
           +I++ G  S+GKS    CL   L E           EA        E     D +   + 
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 53  MPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWC-LARAAGIRYCVLYCDLE 111
            P  + L G     V         II+D +        E W        + +  + CD  
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGA 124

Query: 112 EDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPD 146
               R+  +     G AA        +V    + D
Sbjct: 125 VAEGRETARGDRVAGMAAKQA----YVVHEGVEYD 155

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 16/153 (10%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRI-IDEASFHLDRNQSYASMP-AEKNLR 60
           ++++ G P SGKS  A  LA           V    D+   ++   +    +P + +  R
Sbjct: 11  ILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNR 66

Query: 61  GVLR---SEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRK 117
            +++       R   +   +I+D +  ++      +  A A  + Y VL     E   R 
Sbjct: 67  MIMQIAADVAGRYAKEGYFVILDGV--VRPDWLPAF-TALARPLHYIVLRTTAAEAIER- 122

Query: 118 WNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNR 150
              +R     +  D  +  DL  +F        
Sbjct: 123 -CLDRGGDSLS--DPLVVADLHSQFADLGAFEH 152

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 25/127 (19%), Positives = 38/127 (29%), Gaps = 17/127 (13%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSY--ASMPAEKNLR 60
           + V+ G   SGKS  A+ +A  L           +D    H  RN     +  P   + R
Sbjct: 10  IYVLMGVSGSGKSAVASEVAHQLH-------AAFLDGDFLHPRRNIEKMASGEPLNDDDR 62

Query: 61  ----GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCR 116
                 L          + + ++      K YR     L R        +Y   + D   
Sbjct: 63  KPWLQALNDAAFAMQRTNKVSLIVCSALKKHYR----DLLREGNPNLSFIYLKGDFDVIE 118

Query: 117 KWNKERH 123
              K R 
Sbjct: 119 SRLKARK 125

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 18/174 (10%)

Query: 1   MALIVICGQPSSGKSLAATCLAE--ALKESEAKETVRIIDEASFHLDRNQSYASMPAEKN 58
           + +I+I G P SGKS  A  L E  A     +    +     +   +R   +A    E  
Sbjct: 1   IKVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIY 60

Query: 59  LRGVLRSEVDRSV--SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCR 116
             GV+       +  S  ++++ D + S+     E+    R  G    ++          
Sbjct: 61  GDGVVARLCVEELGTSNHDLVVFDGVRSL----AEVEEFKRLLGDSVYIVAVHSPPKIRY 116

Query: 117 KWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDA-IENSS 169
           K   ER        D K   +L+RR    DR       + E+    D  I N S
Sbjct: 117 KRMIERLRSD----DSKEISELIRR----DRE-ELKLGIGEVIAMADYIITNDS 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	100.0
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.75
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.7
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.66
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.66
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.62
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.61
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.6
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.56
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.52
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.49
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.49
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.48
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.48
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.46
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.46
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.42
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.42
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.42
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.42
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.4
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.39
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.39
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.38
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.36
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.35
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.35
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.34
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.34
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.33
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.33
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.33
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.32
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.3
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.3
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.28
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	99.27
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.27
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.27
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.27
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.26
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.25
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.24
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.23
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.23
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.23
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.22
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.22
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.21
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.21
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.2
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.19
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.18
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.18
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.18
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.17
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.14
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.14
1via_A	175	Shikimate kinase; structural genomics, transferase	99.11
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.1
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.08
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.07
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.06
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.06
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.06
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.03
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.02
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.01
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.0
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.0
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.98
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.96
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.96
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.95
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.92
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.91
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.9
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.87
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.87
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.85
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.84
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.8
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.79
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.78
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.78
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.78
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.77
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.75
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.74
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.73
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.72
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.7
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.7
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.66
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.65
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.64
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.64
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.63
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.61
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.61
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.55
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.54
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.5
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.48
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.47
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.47
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.47
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.46
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.43
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.39
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.39
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.36
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.35
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.29
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.24
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.22
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.18
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.16
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.08
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.08
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.08
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.05
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.05
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.01
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.98
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.97
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.92
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.91
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.88
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	97.88
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.86
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.81
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.72
3bos_A	242	Putative DNA replication factor; P-loop containing	97.66
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.65
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.62
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.62
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.59
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.57
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.54
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.53
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.46
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.45
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.44
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.41
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.38
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.38
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.31
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.29
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.28
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.27
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.27
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.25
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.23
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.22
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.21
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.21
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.21
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.21
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.16
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.16
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.14
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.1
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.08
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.08
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.07
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.07
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.06
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.04
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.03
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.03
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.01
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.99
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.94
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.93
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.93
2xxa_A	433	Signal recognition particle protein; protein trans	96.91
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.91
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.9
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.89
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.87
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.86
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.86
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.84
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.84
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.83
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.83
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.82
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.81
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.81
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.78
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.78
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.77
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.75
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.74
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.74
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.72
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.71
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.7
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.69
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.69
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.68
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.68
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.68
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.67
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.67
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.67
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.67
3pvs_A	447	Replication-associated recombination protein A; ma	96.65
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.64
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.63
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.63
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.62
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.61
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.58
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.58
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.56
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.54
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.52
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.49
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.49
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.48
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.47
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.46
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.46
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.45
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.45
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	96.45
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.45
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.44
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.42
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.4
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.35
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.35
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.34
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	96.33
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.33
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.33
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.33
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.32
2qgz_A	308	Helicase loader, putative primosome component; str	96.32
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.32
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	96.3
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.29
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.27
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.24
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.23
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.23
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.22
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.22
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.22
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.2
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.19
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.18
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.18
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.18
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.17
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.17
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.15
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.14
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.12
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.11
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.07
3co5_A	143	Putative two-component system transcriptional RES	96.03
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.03
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.0
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.0
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.99
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.99
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	95.99
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.97
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.96
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.95
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.95
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.93
2og2_A	359	Putative signal recognition particle receptor; nuc	95.92
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.92
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.9
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.88
3end_A	307	Light-independent protochlorophyllide reductase ir	95.88
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.88
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.86
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.86
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.81
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.78
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.77
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	95.77
3io5_A	333	Recombination and repair protein; storage dimer, i	95.75
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.74
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.74
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.73
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	95.73
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.73
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.73
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.7
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.7
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.69
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.64
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.62
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.62
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.6
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.59
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.59
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.58
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.58
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.56
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.55
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.54
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.54
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.53
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.53
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.52
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.52
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.49
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.46
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.45
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.42
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.41
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.41
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.4
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.4
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.39
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	95.38
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.37
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	95.36
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.34
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.34
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.33
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.33
2fna_A	357	Conserved hypothetical protein; structural genomic	95.32
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.31
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	95.3
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.28
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.28
1g6h_A	257	High-affinity branched-chain amino acid transport	95.27
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.26
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.25
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.25
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.25
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.24
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.23
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	95.22
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.22
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.22
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.22
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.22
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.22
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.21
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.21
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.21
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.21
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.19
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.19
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.19
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.18
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.15
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.15
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.14
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.13
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	95.12
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.11
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.09
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.08
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.06
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.06
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	95.05
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.05
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.04
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.02
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.01
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.0
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.99
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	94.99
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.98
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.98
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.98
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.98
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.97
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.96
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.94
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.92
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.89
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.89
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.89
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.89
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.88
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.88
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.86
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.84
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.83
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.83
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.83
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.83
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.82
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.81
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.81
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.8
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	94.8
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.79
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	94.74
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.74
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.73
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	94.7
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	94.68
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.67
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	94.66
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.65
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.65
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.65
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.63
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	94.63
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.63
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.61
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	94.6
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.6
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.59
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.59
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.55
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.55
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.53
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.53
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.53
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.53
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.53
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.52
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.52
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	94.51
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	94.51
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.51
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.51
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.5
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.5
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.49
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.48
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.47
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.46
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.46
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.46
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.45
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.44
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.43
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.42
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	94.41
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.4
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.38
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.37
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.37
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.35
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.33
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.33
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.32
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.31
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.31
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.29
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.28
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.27
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.26
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.26
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.24
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.24
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	94.23
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.22
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.19
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	94.18
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.18
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	94.17
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.17
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	94.16
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.16
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.15
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.15
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.14
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	94.13
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	94.13
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	94.13
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.13
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	94.12
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.08
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.08
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.07
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	94.06
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.04
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.03
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.02
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.01
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.99
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	93.99
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	93.98
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	93.98
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	93.95
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	93.95
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	93.94
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	93.94

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=100.00  E-value=5.9e-44  Score=319.32  Aligned_cols=250  Identities=22%  Similarity=0.362  Sum_probs=189.4

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      |++|+|+|+|||||||+|+.|++.+...  +..+++++.+.+...... |.. ..+..++......+...+.. ..||+|
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~--g~~~i~~~~D~~~~~l~~-~~~-~~e~~~~~~~~~~i~~~l~~-~~vIiD   78 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKN--NIDVIVLGSDLIRESFPV-WKE-KYEEFIKKSTYRLIDSALKN-YWVIVD   78 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECTHHHHTTSSS-CCG-GGHHHHHHHHHHHHHHHHTT-SEEEEC
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhC--CCEEEEECchHHHHHHhh-hhH-HHHHHHHHHHHHHHHHHhhC-CEEEEe
Confidence            6899999999999999999999997643  344554453322110111 432 24455555555566677777 899999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCP  160 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~  160 (303)
                      ++++++++|+.+.+.++..+.+.++|||+||+++|.+|+.+|+.    .++.+.++.+..+|++|...++|+.|.++|++
T Consensus        79 ~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~----~~~~~~l~~~~~~~e~~~~~~~~~~~~~~Id~  154 (260)
T 3a4m_A           79 DTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE----KIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDT  154 (260)
T ss_dssp             SCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC----SSCHHHHHHHHHHCCCTTSSCGGGCCSEEEET
T ss_pred             CCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC----CCCHHHHHHHHHHhcCccccCCCCCCEEEEeC
Confidence            99999999999999999999999999999999999999999863    46789999999999999988999999999997


Q ss_pred             CCcccccchHHHHHHHHHHHhccCCCCcccccCCCCccc-ccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 047717          161 YKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIAT-QNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGI  239 (303)
Q Consensus       161 ~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t-~~~~~~~~~~l~~lD~~t~~iv~~i~~~~~~~~~~~~~~~  239 (303)
                      +.. .     ..+++++.|.+.        -..+||.+| +.++.+++||||+||+.||+||+++|++++.+        
T Consensus       155 ~~~-~-----~~~ei~~~I~~~--------l~~~~~~~~~~~~~~~~~~~l~~lD~~~~~iv~~~~~~~~~~--------  212 (260)
T 3a4m_A          155 TKD-I-----DFNEIAKKLIEK--------SKEIPKFYVLEENKNKNNNISDKIDKETRKIVSEYIKSKKLD--------  212 (260)
T ss_dssp             TSC-C-----CHHHHHHHHHHH--------HTSCCCC-----------CHHHHHHHHHHHHHHHHHHHHTCC--------
T ss_pred             CCC-C-----CHHHHHHHHHhc--------ccCCCCcccccCCCCCCccHHHHHHHHHHHHHHHHHHhhhcc--------
Confidence            642 1     146777777664        234788888 88899999999999999999999999988721        


Q ss_pred             ccCCCCCceeeccCCCHHHHHhhHHHHHhhhcCCCCCCCCCCCChhHHHHHHHHHHHhhhc
Q 047717          240 SLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRELE  300 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~l~r~rrqf~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~  300 (303)
                                   +++++||+|+|||||+++|+.      ++.+.++|+++||+|||++|+
T Consensus       213 -------------~~~~~~L~~~rr~fl~~~~~~------~~~~~~~~~~~f~~~l~~~~~  254 (260)
T 3a4m_A          213 -------------KDKIKEVVELRKEFLKKIKKM------EEVDADRVLKEFKDLLNSYLE  254 (260)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHC--
T ss_pred             -------------cccHHHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHHhh
Confidence                         257999999999999999875      456899999999999999986

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.75  E-value=3.6e-18  Score=142.35  Aligned_cols=137  Identities=17%  Similarity=0.108  Sum_probs=101.4

Q ss_pred             CE-EEEEEccCCCCHHHHHHHHHH-HHccccCCccEEEecCCc---cCCCcc--ccCCCchhhHHHHHHHHHHHHHhc--
Q 047717            1 MA-LIVICGQPSSGKSLAATCLAE-ALKESEAKETVRIIDEAS---FHLDRN--QSYASMPAEKNLRGVLRSEVDRSV--   71 (303)
Q Consensus         1 M~-LI~l~G~PGSGKSTlA~~La~-~l~~~~~~~~v~~~~~~~---~~~~~~--~~y~~~~~e~~~r~~l~~~v~~~L--   71 (303)
                      || +|+|+|+|||||||+|+.|++ .++..     ++..+...   .+....  ..|. ...+..++..+...+...+  
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~-----~i~~d~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~   74 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPGFY-----NINRDDYRQSIMAHEERDEYKYT-KKKEGIVTGMQFDTAKSILYG   74 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEE-----EECHHHHHHHHTTSCCGGGCCCC-HHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHhhcCCcE-----EecHHHHHHHhhCCCccchhhhc-hhhhhHHHHHHHHHHHHHHhh
Confidence            77 899999999999999999998 34332     22212110   010000  1232 1233444445556677777  


Q ss_pred             -CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCC
Q 047717           72 -SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPD  146 (303)
Q Consensus        72 -~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~  146 (303)
                       ..|..||+|+.+....+|..+..+++..+.++.+||++||.++|.+|+.+|..   +..+++.+..+..+|++|.
T Consensus        75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~~  147 (181)
T 1ly1_A           75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREYL  147 (181)
T ss_dssp             CSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG---GCCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc---CCCCHHHHHHHHHHhhccC
Confidence             78999999999999999999988888888888999999999999999999875   3568899999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.70  E-value=7.1e-17  Score=153.08  Aligned_cols=135  Identities=16%  Similarity=0.177  Sum_probs=108.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      .+|+|+|+|||||||+|+.|++.++.       .+++.+.+.              .++ .+...+...+..+..||+|+
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~~~~-------~~i~~D~~~--------------~~~-~~~~~~~~~l~~g~~vIiD~  316 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVSAGY-------VHVNRDTLG--------------SWQ-RCVSSCQAALRQGKRVVIDN  316 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGGGTC-------EECCGGGSC--------------SHH-HHHHHHHHHHHTTCCEEEES
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhcCc-------EEEccchHH--------------HHH-HHHHHHHHHHhcCCcEEEeC
Confidence            48999999999999999999987754       333432221              112 23345666777889999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCCceeeeC
Q 047717           82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDSPLFELC  159 (303)
Q Consensus        82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~  159 (303)
                      +|....+|..+.++++..+.++.+|||++|.++|.+|+.+|...+.  ..++++++..+..+||+|...++|+.- +.++
T Consensus       317 ~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E~fd~v-~~v~  395 (416)
T 3zvl_A          317 TNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEI-LEIP  395 (416)
T ss_dssp             CCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGGTCSEE-EEEC
T ss_pred             CCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCcccCCcEE-EEEe
Confidence            9999999999999999999999999999999999999999976332  246889999999999999998999863 3344

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.66  E-value=3.4e-16  Score=141.51  Aligned_cols=138  Identities=17%  Similarity=0.099  Sum_probs=101.2

Q ss_pred             CE-EEEEEccCCCCHHHHHHHHHHHH-ccccCCccEEEecCC---ccCCCcc--ccCCCchhhHHHHHHHHHHHHHhc--
Q 047717            1 MA-LIVICGQPSSGKSLAATCLAEAL-KESEAKETVRIIDEA---SFHLDRN--QSYASMPAEKNLRGVLRSEVDRSV--   71 (303)
Q Consensus         1 M~-LI~l~G~PGSGKSTlA~~La~~l-~~~~~~~~v~~~~~~---~~~~~~~--~~y~~~~~e~~~r~~l~~~v~~~L--   71 (303)
                      || +|+|+|+|||||||+|+.|++.+ +..     ++..|+.   .......  ..|. ...+..+...+...+...+  
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~~~~~~~-----~i~~D~~r~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~   74 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPGFY-----NINRDDYRQSIMAHEERDEYKYT-KKKEGIVTGMQFDTAKSILYG   74 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEE-----EECHHHHHHHHTTSCCCC---CC-HHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhCCCcE-----EecccHHHHHhccCCcccccccc-hhhhhHHHHHHHHHHHHHHhh
Confidence            66 89999999999999999999864 322     2222210   0010000  1232 1223334444555667778  


Q ss_pred             -CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q 047717           72 -SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR  147 (303)
Q Consensus        72 -~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~  147 (303)
                       ..+..||+|+.+....+|..+..+++..+.++.+||+++|.+++.+|+.+|..   +..+++.++.+..+|++|..
T Consensus        75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~---~~~~~e~i~~~~~~~~~~~~  148 (301)
T 1ltq_A           75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREYLG  148 (301)
T ss_dssp             CTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG---GCCCHHHHHHHHHHHHHHHT
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC---CCCCHHHHHHHHHHHhcccC
Confidence             78899999999999999999988888888888999999999999999999875   35688999999999987754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.66  E-value=2.6e-16  Score=134.18  Aligned_cols=155  Identities=15%  Similarity=0.152  Sum_probs=101.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-------CccccCCCchhhHHHHHHHHHHHHHhcCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-------DRNQSYASMPAEKNLRGVLRSEVDRSVSK   73 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-------~~~~~y~~~~~e~~~r~~l~~~v~~~L~~   73 (303)
                      |++|+|+|+|||||||+|+.|++.++..     ++..|  .+..       .....|.+.....     ....+...+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~-----~i~~d--~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~l~~~~~~   85 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYP-----FIEGD--ALHPPENIRKMSEGIPLTDDDRWP-----WLAAIGERLAS   85 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCC-----EEEGG--GGCCHHHHHHHHHTCCCCHHHHHH-----HHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCE-----EEeCC--cCcchhhHHHHhcCCCCCchhhHH-----HHHHHHHHHhc
Confidence            4589999999999999999999998643     22222  1110       0011122111111     12234445577


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 047717           74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDS  153 (303)
Q Consensus        74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~  153 (303)
                      +..||+|+.+....+|..+...   .+.++.+|||++|.+++.+|+.+|..   +..+.+.++.+...+++|..    ..
T Consensus        86 ~~~vivd~~~~~~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~Rl~~R~~---~~~~~~~~~~~~~~~~~~~~----~~  155 (202)
T 3t61_A           86 REPVVVSCSALKRSYRDKLRES---APGGLAFVFLHGSESVLAERMHHRTG---HFMPSSLLQTQLETLEDPRG----EV  155 (202)
T ss_dssp             SSCCEEECCCCSHHHHHHHHHT---STTCCEEEEEECCHHHHHHHHHHHHS---SCCCHHHHHHHHHHCCCCTT----ST
T ss_pred             CCCEEEECCCCCHHHHHHHHHh---cCCCeEEEEEeCCHHHHHHHHHHhhc---cCCCHHHHHHHHHhcCCCCC----CC
Confidence            8889999998877777666543   24567899999999999999999975   23468889999999887542    23


Q ss_pred             ceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          154 PLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       154 pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      ..++|+++ ..+   ++..++|++.|.+
T Consensus       156 ~~~~Id~~-~~~---~e~~~~I~~~l~~  179 (202)
T 3t61_A          156 RTVAVDVA-QPL---AEIVREALAGLAR  179 (202)
T ss_dssp             TEEEEESS-SCH---HHHHHHHHHHHHH
T ss_pred             CeEEEeCC-CCH---HHHHHHHHHHHHH
Confidence            56777765 222   3445555555543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.62  E-value=2.2e-15  Score=126.76  Aligned_cols=117  Identities=17%  Similarity=0.252  Sum_probs=80.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|+|+|+|||||||+++.|++.+...  +..+.+++.+.+  .......|........++ .+...+...+..|.+||+
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~g~~vi~   90 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADLLQKE--GYRVEVLDGDWARTTVSEGAGFTREERLRHLK-RIAWIARLLARNGVIVIC   90 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHH-HHHHHHHHHHTTTCEEEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEeeHHHHHHHHhhccCCChhhHHHHHH-HHHHHHHHHHhCCCEEEE
Confidence            589999999999999999999999764  334544442211  111111233211122222 222222334567889999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      |+.+.+..+|.+++++++..+.++++|||++|++++.+|+..
T Consensus        91 d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A           91 SFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred             eCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence            998888889999998888778889999999999999999754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.61  E-value=3.3e-15  Score=124.82  Aligned_cols=132  Identities=13%  Similarity=0.038  Sum_probs=84.4

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--------cCCCccccCCCchhhHHHHHHHHHHHHHhcC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--------FHLDRNQSYASMPAEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--------~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~   72 (303)
                      |++|+|+|+|||||||+|+.|++.++..     ++ .+.+.        +. .....|...  +. .+..+...+...+.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i-~d~~~~g~~i~~~~~-~g~~~~~~~--~~-~~~~~~~~i~~~l~   74 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLPGS-----FV-FEPEEMGQALRKLTP-GFSGDPQEH--PM-WIPLMLDALQYASR   74 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHSTTC-----EE-CCTHHHHHHHHHTST-TCCSCGGGS--TT-HHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCC-----EE-EchhhhHHHHHHhCc-cccchhhhh--HH-HHHHHHHHHHHHHH
Confidence            4689999999999999999999998753     22 12110        11 001111111  11 11122233344444


Q ss_pred             C-CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCC
Q 047717           73 K-DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKP  145 (303)
Q Consensus        73 ~-~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P  145 (303)
                      . +..||+|+++...+++.++...++..+..+..|||+||++++.+|+.+|..+   ++..+.++.+...++++
T Consensus        75 ~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r---~~~~~~~~~~~~~~~~~  145 (183)
T 2vli_A           75 EAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQP---QVNVGTVEDRLNELRGE  145 (183)
T ss_dssp             HCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-------CCHHHHHHHHHHHTSG
T ss_pred             hCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcccc---chhHHHHHHHHHhhccc
Confidence            3 7889999998888788888887777777777899999999999999988642   35678888888888865

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.60  E-value=1.8e-14  Score=121.27  Aligned_cols=170  Identities=16%  Similarity=0.144  Sum_probs=94.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCch-h---hHHHHHHHHHHHHHhcCCCCEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMP-A---EKNLRGVLRSEVDRSVSKDNII   77 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~-~---e~~~r~~l~~~v~~~L~~~~~V   77 (303)
                      .+|+|+|+|||||||+|+.|++.++..     ++..|...-.........+.. .   +......+...+...++.|..|
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v   80 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL   80 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence            489999999999999999999998643     333222110000000011110 0   0011123334455667788899


Q ss_pred             EEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC---CCHHHHH--HHHHHhcCCCCCCCCC
Q 047717           78 IVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA---YDDKIFE--DLVRRFEKPDRRNRWD  152 (303)
Q Consensus        78 IvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~---~~~e~~~--~l~~r~E~P~~~~rwd  152 (303)
                      |+|+.+.....+.++..+++..+.++++|||++|++++.+|+.+|...+...   ...+.+.  ++...|+. -..-...
T Consensus        81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (193)
T 2rhm_A           81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGD-IPPLPLG  159 (193)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCC-CCCCCCC
T ss_pred             EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhc-CCCccCC
Confidence            9999873222233454455556778899999999999999999987522111   1122222  23333332 1111122


Q ss_pred             CceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          153 SPLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       153 ~pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      .+.++|+++....    ...++|++.|.+
T Consensus       160 ~~~~~Idt~~~~~----~~~~~i~~~i~~  184 (193)
T 2rhm_A          160 GPLLTVDTTFPEQ----IDMNAIVQWVRQ  184 (193)
T ss_dssp             SCEEEEECSSGGG----CCHHHHHHHHHH
T ss_pred             CCEEEEeCCCCcc----cCHHHHHHHHHH
Confidence            5788898764322    235666665553

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.56  E-value=2.7e-13  Score=112.59  Aligned_cols=143  Identities=16%  Similarity=0.199  Sum_probs=88.3

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC-------ccccCCCchhhHHHHHHHHHHHHHhcCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD-------RNQSYASMPAEKNLRGVLRSEVDRSVSK   73 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~-------~~~~y~~~~~e~~~r~~l~~~v~~~L~~   73 (303)
                      |.+|+|+|+|||||||+++.|+..++..       +++.+.+...       ....+.+......++ .+...+...+..
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~-------~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~   79 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQLHAA-------FLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQ-ALNDAAFAMQRT   79 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTCE-------EEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhhCcE-------EEeCccccchHHHHHhhcCcCCCccccccHHH-HHHHHHHHHHhc
Confidence            3589999999999999999999987542       2222222100       011122111112222 233334444555


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 047717           74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDS  153 (303)
Q Consensus        74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~  153 (303)
                      +..||+|..++...+|..+    +..+..+.+|||+||.+++.+|+.+|..   ...+.+.+......|++|...   ..
T Consensus        80 ~~~~vi~~~~~~~~~~~~l----~~~~~~~~vv~l~~~~e~~~~R~~~R~~---~~~~~~~~~~~~~~~~~~~~~---~~  149 (175)
T 1knq_A           80 NKVSLIVCSALKKHYRDLL----REGNPNLSFIYLKGDFDVIESRLKARKG---HFFKTQMLVTQFETLQEPGAD---ET  149 (175)
T ss_dssp             CSEEEEECCCCSHHHHHHH----HTTCTTEEEEEEECCHHHHHHHHHTSTT---CCCCHHHHHHHHHHCCCCCTT---CT
T ss_pred             CCcEEEEeCchHHHHHHHH----HhcCCCEEEEEEECCHHHHHHHHHhccC---CCCchHHHHHHHHhhhCcccC---CC
Confidence            7788999877666555433    4445567899999999999999999864   223467777777777765211   12


Q ss_pred             ceeeeCCC
Q 047717          154 PLFELCPY  161 (303)
Q Consensus       154 pl~~i~~~  161 (303)
                      ..++|+++
T Consensus       150 ~~~~Id~~  157 (175)
T 1knq_A          150 DVLVVDID  157 (175)
T ss_dssp             TEEEEECS
T ss_pred             CeEEEeCC
Confidence            46888764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.52  E-value=1e-13  Score=114.30  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=83.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      |++|+|+|+|||||||+|+.|++.++..     +  ++.+.+....    .      ... .+.. ....+..+..||+|
T Consensus         1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~-----~--i~~d~~~~~~----~------~~~-~~~~-~~~~l~~~~~vi~d   61 (173)
T 3kb2_A            1 MTLIILEGPDCCFKSTVAAKLSKELKYP-----I--IKGSSFELAK----S------GNE-KLFE-HFNKLADEDNVIID   61 (173)
T ss_dssp             -CEEEEECSSSSSHHHHHHHHHHHHCCC-----E--EECCCHHHHT----T------CHH-HHHH-HHHHHTTCCSEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCe-----e--ecCcccccch----h------HHH-HHHH-HHHHHHhCCCeEEe
Confidence            8899999999999999999999998743     2  2322211100    0      001 1111 22345678888988


Q ss_pred             CCC---------------CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCC
Q 047717           81 SLN---------------SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKP  145 (303)
Q Consensus        81 ~~n---------------~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P  145 (303)
                      -..               ....++..   +......+..+||+++|++++.+|+.+|++   +....+.++.+...|+++
T Consensus        62 r~~~~~~v~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r---~~~~~~~~~~~~~~~~~~  135 (173)
T 3kb2_A           62 RFVYSNLVYAKKFKDYSILTERQLRF---IEDKIKAKAKVVYLHADPSVIKKRLRVRGD---EYIEGKDIDSILELYREV  135 (173)
T ss_dssp             SCHHHHHHHTTTBTTCCCCCHHHHHH---HHHHHTTTEEEEEEECCHHHHHHHHHHHSC---SCCCHHHHHHHHHHHHHH
T ss_pred             eeecchHHHHHHHHHhhHhhHHHHHH---HhccCCCCCEEEEEeCCHHHHHHHHHhcCC---cchhhhHHHHHHHHHHHH
Confidence            421               11222222   222234577899999999999999999854   234567778888888875


Q ss_pred             CCCCCCCCceeeeCCC
Q 047717          146 DRRNRWDSPLFELCPY  161 (303)
Q Consensus       146 ~~~~rwd~pl~~i~~~  161 (303)
                      .....  ...++|+++
T Consensus       136 ~~~~~--~~~~~id~~  149 (173)
T 3kb2_A          136 MSNAG--LHTYSWDTG  149 (173)
T ss_dssp             HHTCS--SCEEEEETT
T ss_pred             HhhcC--CCEEEEECC
Confidence            54333  367788764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.49  E-value=4e-13  Score=111.64  Aligned_cols=116  Identities=16%  Similarity=0.202  Sum_probs=71.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE--ecCC--ccCC----C-ccccCCC---chhhHHHH---HHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRI--IDEA--SFHL----D-RNQSYAS---MPAEKNLR---GVLRSE   66 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~--~~~~--~~~~----~-~~~~y~~---~~~e~~~r---~~l~~~   66 (303)
                      ++|+|+|+|||||||+|+.|++.++..     .+.  .|+.  ....    . ....|.+   ...+...+   ..+...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPEP-----WLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEG   78 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSC-----EEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCC-----eEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHH
Confidence            489999999999999999999998642     222  2211  0000    0 0001111   01112222   123334


Q ss_pred             HHHhcCCCCEEEEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           67 VDRSVSKDNIIIVDSLNSI-KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        67 v~~~L~~~~~VIvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +...+..|..||+|+.+.. ...+.++....+  +.++.+||+.||.+++.+|+.+|+.
T Consensus        79 ~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~v~l~~~~e~l~~R~~~r~~  135 (178)
T 1qhx_A           79 VVAMARAGARIIIDDVFLGGAAAQERWRSFVG--DLDVLWVGVRCDGAVAEGRETARGD  135 (178)
T ss_dssp             HHHHHHTTCEEEEEECCTTTHHHHHHHHHHHT--TCCEEEEEEECCHHHHHHHHHHTSS
T ss_pred             HHHHHhcCCeEEEEeccccChHHHHHHHHHhc--CCcEEEEEEECCHHHHHHHHHhhCC
Confidence            5556677889999997653 344555554442  4567889999999999999998864

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.49  E-value=3e-13  Score=133.32  Aligned_cols=164  Identities=16%  Similarity=0.235  Sum_probs=103.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      ++|+|+|+|||||||+|+.|++.|...  +..++.++.+.+  .+.....|.+...+..++. +...+...+..|.+||+
T Consensus        53 ~lIvLtGlsGSGKSTlAr~La~~L~~~--G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~-i~eva~~~l~~G~iVI~  129 (630)
T 1x6v_B           53 CTVWLTGLSGAGKTTVSMALEEYLVCH--GIPCYTLDGDNIRQGLNKNLGFSPEDREENVRR-IAEVAKLFADAGLVCIT  129 (630)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHH-HHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEechHHhhhccCccccCChhhhHHHHHH-HHHHHHHHHhCCCEEEE
Confidence            589999999999999999999998433  234555553322  1212224443334445552 33344445678899999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh----hhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER----HEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL  155 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R----~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl  155 (303)
                      |....++.+|++++.+++..+.++++|||+||.++|.+|+.++    .+.+    ....+..+...|+.      +..|.
T Consensus       130 d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~----~~~~~~~~~~~Ye~------p~~~d  199 (630)
T 1x6v_B          130 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAG----EIKGFTGIDSEYEK------PEAPE  199 (630)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC--------CBTTTBCCCC------CSSCS
T ss_pred             eCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhh----hHHHHHHhhhhhcc------cCCCc
Confidence            9766667788899888887788899999999999999998632    1111    01111112223333      34567


Q ss_pred             eeeCCCCcccccchHHHHHHHHHHHh
Q 047717          156 FELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       156 ~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      ++|+++..++   ++..++|++.|..
T Consensus       200 lvIDts~~s~---eevv~~Il~~L~~  222 (630)
T 1x6v_B          200 LVLKTDSCDV---NDCVQQVVELLQE  222 (630)
T ss_dssp             EEEETTSSCH---HHHHHHHHHHHHH
T ss_pred             EEEECCCCCH---HHHHHHHHHHHHh
Confidence            8888753332   3455666666654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.48  E-value=3.1e-13  Score=119.65  Aligned_cols=136  Identities=21%  Similarity=0.244  Sum_probs=89.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCC----C--------ccccCCC------chhhHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHL----D--------RNQSYAS------MPAEKN   58 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~----~--------~~~~y~~------~~~e~~   58 (303)
                      |++|+|+|+|||||||+|+.|++.++..     ++..|+..    ..+    .        ....+..      ......
T Consensus         1 M~li~I~G~~GSGKSTla~~La~~~~~~-----~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   75 (253)
T 2ze6_A            1 MLLHLIYGPTCSGKTDMAIQIAQETGWP-----VVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAES   75 (253)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCC-----EEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHH
T ss_pred             CeEEEEECCCCcCHHHHHHHHHhcCCCe-----EEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHH
Confidence            8999999999999999999999998753     33333210    000    0        0000110      112244


Q ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHH----cCCcEEEEEEecCH-HHHHHHHHHhhhc--CCCCCC
Q 047717           59 LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARA----AGIRYCVLYCDLEE-DHCRKWNKERHEK--GEAAYD  131 (303)
Q Consensus        59 ~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~----~~~~~~vI~l~~~~-e~~~~R~~~R~~~--~~~~~~  131 (303)
                      ++......+ ..+..+..||+++...  .   .+..+++.    .+.++++||+++|. +++.+|+.+|...  ..++++
T Consensus        76 f~~~~~~~i-~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~  149 (253)
T 2ze6_A           76 AHRRLIFEV-DWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDR  149 (253)
T ss_dssp             HHHHHHHHH-HTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSS
T ss_pred             HHHHHHHHH-HHHhCCCCeEEeccHH--H---HHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHHHHHhcCccc
Confidence            444555566 6777888888876432  1   12234444    55778999999997 9999999999864  224566


Q ss_pred             HHHHHHHHHHhcCCCC
Q 047717          132 DKIFEDLVRRFEKPDR  147 (303)
Q Consensus       132 ~e~~~~l~~r~E~P~~  147 (303)
                      ++.++.+...|+.|..
T Consensus       150 ~~~l~e~~~~~~~p~~  165 (253)
T 2ze6_A          150 PSLLEELAELWNYPAA  165 (253)
T ss_dssp             CCHHHHHHHHHTSTTH
T ss_pred             chHHHHHHHhcCCcch
Confidence            6889999999998763

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.48  E-value=8.8e-14  Score=118.46  Aligned_cols=141  Identities=18%  Similarity=0.146  Sum_probs=89.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-------CccccCCCchhhHHHHHHHHHHHHHhcCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-------DRNQSYASMPAEKNLRGVLRSEVDRSVSKD   74 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-------~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~   74 (303)
                      .+|+|+|+|||||||+++.|+..++..       .++.+.+..       .....+.+......++ .+...+...+..+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~-------~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g  101 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADETGLE-------FAEADAFHSPENIATMQRGIPLTDEDRWPWLR-SLAEWMDARADAG  101 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCE-------EEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCe-------EEcccccccHHHHHHHhcCCCCCCcccccHHH-HHHHHHHHHHhcC
Confidence            389999999999999999999988542       223222210       0011122211112222 3333344455667


Q ss_pred             CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717           75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP  154 (303)
Q Consensus        75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p  154 (303)
                      ..+|+|.....+.+|..+    +....++.+|||+||.+++.+|+.+|...   ..+.+.+..+...++++..    +.+
T Consensus       102 ~~viid~~~~~~~~~~~l----~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~---~~~~~~l~~~~~~~~~~~~----~~~  170 (200)
T 4eun_A          102 VSTIITCSALKRTYRDVL----REGPPSVDFLHLDGPAEVIKGRMSKREGH---FMPASLLQSQLATLEALEP----DES  170 (200)
T ss_dssp             CCEEEEECCCCHHHHHHH----TTSSSCCEEEEEECCHHHHHHHHTTCSCC---SSCGGGHHHHHHHCCCCCT----TSC
T ss_pred             CCEEEEchhhhHHHHHHH----HHhCCceEEEEEeCCHHHHHHHHHhcccC---CCCHHHHHHHHHHhCCCCC----CCC
Confidence            788999887776666544    33334668999999999999999988652   3356778888888876442    225


Q ss_pred             eeeeCCC
Q 047717          155 LFELCPY  161 (303)
Q Consensus       155 l~~i~~~  161 (303)
                      .++|+++
T Consensus       171 ~~~Id~~  177 (200)
T 4eun_A          171 GIVLDLR  177 (200)
T ss_dssp             EEEEETT
T ss_pred             eEEEECC
Confidence            7888864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.46  E-value=1.7e-13  Score=117.74  Aligned_cols=115  Identities=17%  Similarity=0.279  Sum_probs=77.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc-cccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK-ESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~-~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      .+|+|+|+|||||||+++.|++.++ ..  +..+++++.+.+.  ......|.....+..++ .+...+...+..|..||
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~--g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~-~~~~~~~~~l~~g~~VI  102 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQLVRDR--RVHAYRLDGDNIRFGLNKDLGFSEADRNENIR-RIAEVAKLFADSNSIAI  102 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEECHHHHTTTTTTTCCSSHHHHHHHHH-HHHHHHHHHHHTTCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhcccc--CCcEEEECChHHhhhhccccCCCHHHHHHHHH-HHHHHHHHHHHCCCEEE
Confidence            5899999999999999999999987 32  2335555532221  11111232222233333 22333455677889999


Q ss_pred             EcCCCCchHHHHHHHHHHH------HcCCcEEEEEEecCHHHHHHHH
Q 047717           79 VDSLNSIKGYRYELWCLAR------AAGIRYCVLYCDLEEDHCRKWN  119 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak------~~~~~~~vI~l~~~~e~~~~R~  119 (303)
                      +|..+.+..+|..+..++.      ..+.+..+|||+||++++.+|+
T Consensus       103 ~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A          103 TSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             EECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             EecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            9966555677877877766      3457799999999999999995

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.46  E-value=3.1e-13  Score=131.43  Aligned_cols=123  Identities=15%  Similarity=0.167  Sum_probs=82.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCC-CccccCCCchhhH-HHHH-HH---HHHHHHhc-
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHL-DRNQSYASMPAEK-NLRG-VL---RSEVDRSV-   71 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~-~~~~~y~~~~~e~-~~r~-~l---~~~v~~~L-   71 (303)
                      .+|+|+|+|||||||+|+.|+++++..+++..++..|+..   .+. .....|.....+. ..+. ..   ...+...| 
T Consensus        36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L~  115 (520)
T 2axn_A           36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYLA  115 (520)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999998764443334434321   111 1123454332221 1111 11   12233445 


Q ss_pred             -CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCH-HHHHHHHHHhhh
Q 047717           72 -SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE-DHCRKWNKERHE  124 (303)
Q Consensus        72 -~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~-e~~~~R~~~R~~  124 (303)
                       ..|.+||+|++|..+.+|..+.++++..+..+++|++.|+. +.+.+|+..|..
T Consensus       116 ~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~  170 (520)
T 2axn_A          116 KEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKI  170 (520)
T ss_dssp             HSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTT
T ss_pred             hcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhh
Confidence             67899999999999999999999999889888899999984 555566655653

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.42  E-value=7.4e-13  Score=117.01  Aligned_cols=118  Identities=16%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCc----cccCCCch---hhHHHHHHHHHHHHHhcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDR----NQSYASMP---AEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~----~~~y~~~~---~e~~~r~~l~~~v~~~L~   72 (303)
                      .+|+|+|+|||||||+|+.|++.++.     .+++++.+.+.  ...    ...+....   .+..........+...+.
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  107 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSS  107 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHh
Confidence            48999999999999999999998863     23444433221  000    00111111   111122233344555666


Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .|..||+|+++....++.++...++..+..+.++|+.+|.++|.+|+.+|..
T Consensus       108 ~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~  159 (253)
T 2p5t_B          108 LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYE  159 (253)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence            7778999999887778888888888899999999999999999999988854

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.42  E-value=1.5e-12  Score=117.28  Aligned_cols=135  Identities=13%  Similarity=0.170  Sum_probs=87.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccc------cCCCc---hhhHHHHHHHHHHHHHhcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQ------SYASM---PAEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~------~y~~~---~~e~~~r~~l~~~v~~~L~   72 (303)
                      .+|+|+|+|||||||+|+.|++.++.     ...+++.+.+......      .|...   .....+.......+...+.
T Consensus        34 ~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~  108 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD  108 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence            48999999999999999999998742     1234443222100000      01111   0112222223345666777


Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHH----HHHHHHhhhcCC---CCCCHHHHHHHHHH
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHC----RKWNKERHEKGE---AAYDDKIFEDLVRR  141 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~----~~R~~~R~~~~~---~~~~~e~~~~l~~r  141 (303)
                      .|..||+|+++....++.++...++..|.++.++++.+|++++    .+|+.+|...++   ...+.+..+.+..+
T Consensus       109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~r  184 (287)
T 1gvn_B          109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKN  184 (287)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            8889999999888777888888888888888889999999999    888887754332   23444555444444

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.42  E-value=3.2e-13  Score=111.07  Aligned_cols=113  Identities=20%  Similarity=0.171  Sum_probs=67.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC-ch--hhHHHH-----HHHHHHHHHhc--
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS-MP--AEKNLR-----GVLRSEVDRSV--   71 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~-~~--~e~~~r-----~~l~~~v~~~L--   71 (303)
                      ++|+|+|+|||||||+|+.| +.++.     .++..++.-........... ..  ....++     ..+...+...+  
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   75 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGA-----KVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT   75 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTC-----EEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCC-----cEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence            58999999999999999999 77654     34443321000000000000 00  001111     11223344455  


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ..+..||+||. .....+..+..   ..+.++++||+++|.+++.+|+..|+.
T Consensus        76 ~~~~~vi~dg~-~~~~~~~~l~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~  124 (179)
T 3lw7_A           76 SNHDLVVFDGV-RSLAEVEEFKR---LLGDSVYIVAVHSPPKIRYKRMIERLR  124 (179)
T ss_dssp             CCCSCEEEECC-CCHHHHHHHHH---HHCSCEEEEEEECCHHHHHHHHHTCC-
T ss_pred             cCCCeEEEeCC-CCHHHHHHHHH---HhCCCcEEEEEECCHHHHHHHHHhccC
Confidence            67789999996 55555544443   334678999999999999999999865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.42  E-value=1.1e-12  Score=110.06  Aligned_cols=117  Identities=13%  Similarity=0.122  Sum_probs=70.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---c-----CC--------CccccCCCchhhHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---F-----HL--------DRNQSYASMPAEKNLRGVLRS   65 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~-----~~--------~~~~~y~~~~~e~~~r~~l~~   65 (303)
                      .+|+|+|+|||||||+|+.|++.++..     ++..++..   .     ..        ..+..+........+...+..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~   78 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYGYT-----HLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQ   78 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHh
Confidence            489999999999999999999998753     22222110   0     00        000011110111112222222


Q ss_pred             HHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           66 EVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        66 ~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+ ..+..+..||+|+.+.....+..+...+.....+.++||+++|++++.+|+.+|..
T Consensus        79 ~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  136 (196)
T 1tev_A           79 TM-AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  136 (196)
T ss_dssp             HH-HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             hh-ccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence            22 23456789999998877665554544333222355799999999999999998864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.40  E-value=2.1e-12  Score=108.24  Aligned_cols=117  Identities=16%  Similarity=0.233  Sum_probs=66.4

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC---CCccccCCC------chhh--HHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH---LDRNQSYAS------MPAE--KNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~---~~~~~~y~~------~~~e--~~~r~~l~~~v~~   69 (303)
                      |++|+|+|+|||||||+|+.|+++++..  +..+.+++.....   ..+...+..      ...+  ......+...+..
T Consensus         1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   78 (194)
T 1nks_A            1 MKIGIVTGIPGVGKSTVLAKVKEILDNQ--GINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAE   78 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTT--TCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhc--CceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999854  2334444311100   001111111      1011  1111122233455


Q ss_pred             hc--CCCCEEEEcCCCCch---HH----HHHHHHHHHHcCCcEEEEEEecCHHHHHHH-HHH--hh
Q 047717           70 SV--SKDNIIIVDSLNSIK---GY----RYELWCLARAAGIRYCVLYCDLEEDHCRKW-NKE--RH  123 (303)
Q Consensus        70 ~L--~~~~~VIvD~~n~~k---~~----R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R-~~~--R~  123 (303)
                      .+  ..+..||+|+.....   ++    ..++.   +.. .+.++||+++|++++.+| +..  |+
T Consensus        79 ~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~---~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~  140 (194)
T 1nks_A           79 EARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVI---TEI-NPSVIFLLEADPKIILSRQKRDTTRN  140 (194)
T ss_dssp             HHHHTCSSEEEEEECSEEEETTEEEESSCHHHH---HHH-CCSEEEEEECCHHHHHHHHHHCTTTC
T ss_pred             HhhccCCCEEEECCchhhccccccccCCCHHHH---Hhc-CCCEEEEEeCCHHHHHHHHHhhcccC
Confidence            66  788999999852111   11    01211   222 256799999999998865 666  64

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.39  E-value=2.4e-11  Score=105.90  Aligned_cols=154  Identities=12%  Similarity=0.074  Sum_probs=90.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccCCCch-hhHHHHHHHHH---------HHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSYASMP-AEKNLRGVLRS---------EVD   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y~~~~-~e~~~r~~l~~---------~v~   68 (303)
                      .+|+|.|+|||||||+++.|++.++. +  ..++...+..-....   ...+.+.. ........++.         .+.
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~--~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~  103 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHRLVK-D--YDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI  103 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTT-T--SCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhc-C--CCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999975 3  345444322111000   01111110 00111111111         123


Q ss_pred             HhcCCCCEEEEc----------CC--CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC---HH
Q 047717           69 RSVSKDNIIIVD----------SL--NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD---DK  133 (303)
Q Consensus        69 ~~L~~~~~VIvD----------~~--n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~---~e  133 (303)
                      .++..|.+||+|          +.  +....+.+.+...+.....+..+||+++|++++.+|+.+|+.. .++++   .+
T Consensus       104 ~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~-~dr~e~~~~~  182 (229)
T 4eaq_A          104 PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD-QNRLDQEDLK  182 (229)
T ss_dssp             HHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC------CCCHHHHH
T ss_pred             HHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCC-ccchhhhhHH
Confidence            455688999999          53  2334445556555555567889999999999999999998642 23443   35


Q ss_pred             HHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          134 IFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       134 ~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      .++++...|++....  ...+.++|+.+
T Consensus       183 ~~~rv~~~y~~l~~~--~~~~~~vIDa~  208 (229)
T 4eaq_A          183 FHEKVIEGYQEIIHN--ESQRFKSVNAD  208 (229)
T ss_dssp             HHHHHHHHHHHHTTT--CTTTEEEEETT
T ss_pred             HHHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence            667777777764322  22456778764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.39  E-value=8.6e-12  Score=104.63  Aligned_cols=150  Identities=17%  Similarity=0.153  Sum_probs=85.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccCCC---chh-hH-----HHHHHHHHHHHHh
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSYAS---MPA-EK-----NLRGVLRSEVDRS   70 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y~~---~~~-e~-----~~r~~l~~~v~~~   70 (303)
                      +|+|+|+|||||||+|+.|++.+...  +..++..++..-....   ...|.+   ... ..     .....+...+...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~--g~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~   79 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQK--GYFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPD   79 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999998543  2345544432110000   001100   000 00     0011333344556


Q ss_pred             cCCCCEEEEcCCC------------CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 047717           71 VSKDNIIIVDSLN------------SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDL  138 (303)
Q Consensus        71 L~~~~~VIvD~~n------------~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l  138 (303)
                      +..+..||+|...            ....+..++..+.+....+.++|||+||++++.+|+.+|+.  .+  ..+.+.++
T Consensus        80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~--~~--~~~~~~~~  155 (195)
T 2pbr_A           80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNR--FE--NKEFLEKV  155 (195)
T ss_dssp             HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTC--CC--CHHHHHHH
T ss_pred             HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCc--cc--hHHHHHHH
Confidence            6788999999421            11112222222222222567899999999999999986543  11  56777777


Q ss_pred             HHHhcCCCCCCCCCCceeeeCCC
Q 047717          139 VRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       139 ~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      ...|+.+....   .+.++|+++
T Consensus       156 ~~~~~~~~~~~---~~~~~Id~~  175 (195)
T 2pbr_A          156 RKGFLELAKEE---ENVVVIDAS  175 (195)
T ss_dssp             HHHHHHHHHHS---TTEEEEETT
T ss_pred             HHHHHHHHhhC---CCEEEEECC
Confidence            77777643211   366888763

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.38  E-value=7.8e-12  Score=106.17  Aligned_cols=150  Identities=15%  Similarity=0.136  Sum_probs=83.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCcc--------ccCC--CchhhHHHHHHHHHHHHHhc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRN--------QSYA--SMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~--------~~y~--~~~~e~~~r~~l~~~v~~~L   71 (303)
                      +|+|+|+|||||||+|+.|++.++..     ++..++.... ....        ..+.  ...........+...+.. .
T Consensus        22 ~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~-~   95 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNN-P   95 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS-G
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhc-c
Confidence            79999999999999999999998653     3333321000 0000        0000  000000111122222211 2


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCC-CC-C
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKP-DR-R  148 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P-~~-~  148 (303)
                      ..+..||+|+.+....++..+..+++..+. +..+|||++|++++.+|+.+|++.   ....+.+......|..- .+ .
T Consensus        96 ~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~---~~~~e~~~~r~~~~~~~~~~~~  172 (201)
T 2cdn_A           96 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRA---DDTDDVILNRMKVYRDETAPLL  172 (201)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCT---TCSHHHHHHHHHHHHHHTTTHH
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCC---CCCHHHHHHHHHHHHHhhHHHH
Confidence            345679999977666677666666665543 457999999999999999998641   12455554444434321 00 0


Q ss_pred             CCCCCceeeeCCC
Q 047717          149 NRWDSPLFELCPY  161 (303)
Q Consensus       149 ~rwd~pl~~i~~~  161 (303)
                      ..+....++|+.+
T Consensus       173 ~~~~~~~~~Id~~  185 (201)
T 2cdn_A          173 EYYRDQLKTVDAV  185 (201)
T ss_dssp             HHTTTTEEEEECC
T ss_pred             HHhcCcEEEEeCC
Confidence            1123356777753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.36  E-value=4.7e-12  Score=107.75  Aligned_cols=117  Identities=17%  Similarity=0.064  Sum_probs=68.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-----CccccC--CCc-hhhHHH----H-HHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-----DRNQSY--ASM-PAEKNL----R-GVLRSEVD   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-----~~~~~y--~~~-~~e~~~----r-~~l~~~v~   68 (303)
                      ++|+|+|+|||||||+|+.|++.++..  + +++..++. .+-     .....+  ... ..+..+    + ..+...+.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~--g-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~   80 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIELK--R-DVYLTEWN-SSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYIL   80 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTT--S-CEEEEETT-CCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhhc--C-CEEEecCC-cHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999864  2 44443322 110     000011  011 111111    0 01222334


Q ss_pred             HhcCCCCEEEEcCCCCchHHHHH---------HHHHHHHcCCcEEEEEEecCHHHHHHHHH-Hhh
Q 047717           69 RSVSKDNIIIVDSLNSIKGYRYE---------LWCLARAAGIRYCVLYCDLEEDHCRKWNK-ERH  123 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~~k~~R~~---------l~~~ak~~~~~~~vI~l~~~~e~~~~R~~-~R~  123 (303)
                      ..+..+..||+|+..+. ...|+         +..+.+....+.++||+++|++++.+|+. +|+
T Consensus        81 ~~l~~g~~vi~D~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~  144 (213)
T 2plr_A           81 PMLKSGFIVISDRYIYT-AYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR  144 (213)
T ss_dssp             HHHHTTCEEEEESCHHH-HHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             HHHhCCCEEEEeCcHhH-HHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence            55678899999985432 11222         22232333446789999999999999998 775

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.35  E-value=8.5e-12  Score=106.06  Aligned_cols=113  Identities=19%  Similarity=0.262  Sum_probs=73.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|+|+|++||||||+++.|+..+...  +.-+++++.+.+.  ......|........++ .+..........+..||+
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~l~~~--G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~  102 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQMLYQK--GKLCYILDGDNVRHGLNRDLSFKAEDRAENIR-RVGEVAKLFADAGIICIA  102 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHH-HHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhc--CceEEEecCchhhhHhhcccCcChHHHHHHHH-HHHHHHHHHHhCCceEEE
Confidence            489999999999999999999998643  2222344432221  11112233222222222 222233344467889999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN  119 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~  119 (303)
                      +..+..+.+|..+..+++  +..+.+|||++|.+++.+|.
T Consensus       103 ~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A          103 SLISPYRTDRDACRSLLP--EGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             ECCCCCHHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHC
T ss_pred             ecCCchHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhc
Confidence            988888888877765432  34678899999999999997

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.35  E-value=2.8e-12  Score=125.94  Aligned_cols=116  Identities=16%  Similarity=0.216  Sum_probs=79.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|+|+|+|||||||+|+.|++.|+..+ +..++.++.+.+  .......|........++ .+...+...+..|.+||+
T Consensus       397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G-~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~-ri~~v~~~~~~~g~~VI~  474 (573)
T 1m8p_A          397 FTIFLTGYMNSGKDAIARALQVTLNQQG-GRSVSLLLGDTVRHELSSELGFTREDRHTNIQ-RIAFVATELTRAGAAVIA  474 (573)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHC-SSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHH-HHHHHHHHHHHTTCEEEE
T ss_pred             eEEEeecCCCCCHHHHHHHHHHHhcccC-CceEEEECcHHHHHHhccccCCChhHHHHHHH-HHHHHHHHHHhCCCEEEE
Confidence            5899999999999999999999998531 033455543221  111122333222222333 233344455678899999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK  120 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~  120 (303)
                      |..+.++..|..++.+.+..+ ++++|||+||.++|.+|..
T Consensus       475 ~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~~  514 (573)
T 1m8p_A          475 APIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDK  514 (573)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHCS
T ss_pred             EcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHhc
Confidence            988878888988888776544 6789999999999999963

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.34  E-value=7.2e-13  Score=111.61  Aligned_cols=116  Identities=16%  Similarity=0.154  Sum_probs=71.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-----CCCc----cccCC--CchhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-----HLDR----NQSYA--SMPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-----~~~~----~~~y~--~~~~e~~~r~~l~~~v~~   69 (303)
                      |++|+|+|+|||||||+|+.|++.++..     ++..++...     +...    ...+.  ...........+...+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~   83 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYGYT-----HLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVA   83 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence            3589999999999999999999998753     222221000     0000    00000  000012223345555666


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+..+..||+|+......++..+..   ....+.++||+++|++++.+|+.+|+.
T Consensus        84 ~~~~~~~vi~d~~~~~~~~~~~~~~---~~~~~~~vi~l~~~~e~~~~R~~~R~~  135 (196)
T 2c95_A           84 KVNTSKGFLIDGYPREVQQGEEFER---RIGQPTLLLYVDAGPETMTQRLLKRGE  135 (196)
T ss_dssp             HTTTCSCEEEESCCCSHHHHHHHHH---HTCCCSEEEEEECCHHHHHHHHHHHHT
T ss_pred             ccccCCcEEEeCCCCCHHHHHHHHH---hcCCCCEEEEEECCHHHHHHHHHccCC
Confidence            6778899999996554444433332   234466899999999999999998863

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.33  E-value=2.9e-11  Score=104.28  Aligned_cols=154  Identities=16%  Similarity=0.143  Sum_probs=92.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC---ccccCCC-------chhhHHH----H-HHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD---RNQSYAS-------MPAEKNL----R-GVLRSE   66 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~---~~~~y~~-------~~~e~~~----r-~~l~~~   66 (303)
                      .+|+|.|++||||||+++.|++++...  +..++...+.+-...   -...+.+       ...+..+    | ..+...
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~   84 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRER--GIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGV   84 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999875  345555443321100   0001110       1111110    1 123334


Q ss_pred             HHHhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC---C
Q 047717           67 VDRSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY---D  131 (303)
Q Consensus        67 v~~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~---~  131 (303)
                      +..+|..|.+||+|-..+            -..+-+++...+.....|..+|||++|++++.+|+.+|+.  .+.+   +
T Consensus        85 i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~--~dr~E~~~  162 (213)
T 4edh_A           85 IRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR--LDRFEQED  162 (213)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS--CCTTTTSC
T ss_pred             HHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC--cCcccccH
Confidence            556778999999996221            1122333343344446789999999999999999998853  1233   3


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          132 DKIFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       132 ~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      .+.++++...|+.-..  ....+.++|+.+
T Consensus       163 ~~~~~rv~~~y~~l~~--~~~~~~~vIDa~  190 (213)
T 4edh_A          163 RRFFEAVRQTYLQRAA--QAPERYQVLDAG  190 (213)
T ss_dssp             HHHHHHHHHHHHHHHH--HCTTTEEEEETT
T ss_pred             HHHHHHHHHHHHHHHH--HCCCcEEEEeCC
Confidence            5777777777764211  112357888865

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.33  E-value=9e-13  Score=111.28  Aligned_cols=115  Identities=17%  Similarity=0.105  Sum_probs=73.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---c------CCCccccCC--CchhhHHHHHHHHHHHHHh
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---F------HLDRNQSYA--SMPAEKNLRGVLRSEVDRS   70 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~------~~~~~~~y~--~~~~e~~~r~~l~~~v~~~   70 (303)
                      ++|+|+|+|||||||+|+.|+++++..     ++..++.-   .      +..-...+.  ...........+...+...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~   87 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYGFT-----HLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVAS   87 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence            489999999999999999999998753     22222110   0      000000000  0001122333455555566


Q ss_pred             cCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           71 VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        71 L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +..+..||+|+.......+..+.   +..+.+.++||+++|++++.+|+.+|..
T Consensus        88 ~~~~~~vi~dg~~~~~~~~~~l~---~~~~~~~~~i~l~~~~~~~~~R~~~R~~  138 (199)
T 2bwj_A           88 LGDTRGFLIDGYPREVKQGEEFG---RRIGDPQLVICMDCSADTMTNRLLQMSR  138 (199)
T ss_dssp             TTSCSCEEEETCCSSHHHHHHHH---HHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred             cccCccEEEeCCCCCHHHHHHHH---HhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence            66788999999877666554443   3334566799999999999999998864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.33  E-value=2.7e-12  Score=107.58  Aligned_cols=117  Identities=13%  Similarity=0.078  Sum_probs=69.8

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---c--C--CCc--cccCCC--chhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---F--H--LDR--NQSYAS--MPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~--~--~~~--~~~y~~--~~~e~~~r~~l~~~v~~   69 (303)
                      |++|+|+|+|||||||+|+.|++.++..     ++..|+..   .  +  ...  ...+..  ..........+...+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~   80 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWV-----HLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA   80 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCe-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence            3589999999999999999999998753     22222110   0  0  000  000000  00011122233333322


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .  .+..||+|+.+.....+..+...++....+.++||+++|.+++.+|+.+|..
T Consensus        81 ~--~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~  133 (194)
T 1qf9_A           81 N--QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE  133 (194)
T ss_dssp             S--TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             c--CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence            2  5678999997766655555544433222456799999999999999999864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.32  E-value=6.1e-12  Score=106.41  Aligned_cols=152  Identities=18%  Similarity=0.170  Sum_probs=75.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--cCCCccccCCCchhhHHHHH--HHH---HHHHHhcCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--FHLDRNQSYASMPAEKNLRG--VLR---SEVDRSVSKD   74 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--~~~~~~~~y~~~~~e~~~r~--~l~---~~v~~~L~~~   74 (303)
                      ++|+|+|+|||||||+++.|+++++..       .+.+..  ..+ -...|.+.........  .+.   ..+...+..+
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~-------~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   72 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYE-------IFKEPVEENPY-FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLE   72 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCE-------EECCCGGGCTT-HHHHTTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCc-------EEcccccccHH-HHHHHhCccccchhHHHHHHHHHHHHHHHhhccC
Confidence            379999999999999999999999752       122211  111 1122333211110000  111   1223344555


Q ss_pred             CEEEEcCCCCch---------------HHHHHHHHHHH----H-------cCCcEEEEEEecCHHHHHHHHHHhhhcCCC
Q 047717           75 NIIIVDSLNSIK---------------GYRYELWCLAR----A-------AGIRYCVLYCDLEEDHCRKWNKERHEKGEA  128 (303)
Q Consensus        75 ~~VIvD~~n~~k---------------~~R~~l~~~ak----~-------~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~  128 (303)
                      . ||+|...+..               ..+..+..+..    .       ...+..+||+++|++++.+|+.+|++....
T Consensus        73 ~-vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~  151 (205)
T 2jaq_A           73 N-IIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEEL  151 (205)
T ss_dssp             C-EEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHHH
T ss_pred             C-EEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhhh
Confidence            4 9999865421               01111111111    1       134668999999999999999888542110


Q ss_pred             CCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCC
Q 047717          129 AYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYK  162 (303)
Q Consensus       129 ~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~  162 (303)
                      ..+.+....+...|+.-....++..+.++|+++.
T Consensus       152 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~  185 (205)
T 2jaq_A          152 LIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL  185 (205)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred             cCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence            0122444444444442111112345788888653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.30  E-value=4.9e-12  Score=107.90  Aligned_cols=149  Identities=13%  Similarity=0.109  Sum_probs=84.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC----------CccccCCCchhhHHHHH----HHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL----------DRNQSYASMPAEKNLRG----VLRSEV   67 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~----------~~~~~y~~~~~e~~~r~----~l~~~v   67 (303)
                      .+|+|+|+|||||||+|+.|+++++..++..  ..+.+...+.          .....+........+..    .+ ..+
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~--~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i   87 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV--KHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM-NEI   87 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--EEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH-HHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE--EEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence            3899999999999999999999998764443  2222221100          00001110000000000    11 134


Q ss_pred             HHhcCCCCEEEEcCCCCc----hHHH----HHHH-HHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC-CHHHHHH
Q 047717           68 DRSVSKDNIIIVDSLNSI----KGYR----YELW-CLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY-DDKIFED  137 (303)
Q Consensus        68 ~~~L~~~~~VIvD~~n~~----k~~R----~~l~-~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~-~~e~~~~  137 (303)
                      ...+..+..||+|+..+.    .+.+    .++. .+......+.++|||++|++++.+|+.+|..    ++ ..+...+
T Consensus        88 ~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~----r~~~~~~~~~  163 (212)
T 2wwf_A           88 KSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEE----IYEKVETQKK  163 (212)
T ss_dssp             HHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSS----TTCSHHHHHH
T ss_pred             HHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcc----cccHHHHHHH
Confidence            455667889999985421    1111    1111 1111123567899999999999999876522    22 3566777


Q ss_pred             HHHHhcCCCCCCCCCCceeeeCCC
Q 047717          138 LVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       138 l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      +...|+++..    ..+.++|+++
T Consensus       164 ~~~~~~~~~~----~~~~~~Id~~  183 (212)
T 2wwf_A          164 IYETYKHFAH----EDYWINIDAT  183 (212)
T ss_dssp             HHHHGGGGTT----CTTEEEEECS
T ss_pred             HHHHHHHHhc----cCCEEEEECC
Confidence            7778876543    3457888764

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.30  E-value=4.7e-11  Score=102.35  Aligned_cols=169  Identities=14%  Similarity=0.109  Sum_probs=91.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccCC-----CchhhHHH----H-HHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSYA-----SMPAEKNL----R-GVLRSEVD   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y~-----~~~~e~~~----r-~~l~~~v~   68 (303)
                      ..|+|.|+.||||||+++.|+++|..   +.+++...+.+-....   ...+.     +...+..+    | ..+...+.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~---~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~   79 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVK---DYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI   79 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTT---TSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHC---CCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999964   4566665443211000   00010     11111110    1 12333455


Q ss_pred             HhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCH---H
Q 047717           69 RSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDD---K  133 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~---e  133 (303)
                      .+|.+|.+||+|-..+            ...+-.++...+...-.|..+||+++|++++.+|+.+|+.. .+++..   +
T Consensus        80 p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~-~dr~e~~~~~  158 (205)
T 4hlc_A           80 PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD-QNRLDQEDLK  158 (205)
T ss_dssp             HHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC--------CCHHHHH
T ss_pred             HHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCc-ccchhccCHH
Confidence            6788999999996321            11122233333333346889999999999999999988753 244543   4


Q ss_pred             HHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHH
Q 047717          134 IFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT  180 (303)
Q Consensus       134 ~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~  180 (303)
                      .++++.+.|..--.  .......+|+.+. ++   ++..++|++.|.
T Consensus       159 f~~~v~~~Y~~l~~--~~~~~~~~IDa~~-~~---e~V~~~i~~~i~  199 (205)
T 4hlc_A          159 FHEKVIEGYQEIIH--NESQRFKSVNADQ-PL---ENVVEDTYQTII  199 (205)
T ss_dssp             HHHHHHHHHHHHHH--SCCTTEEEEETTS-CH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hCCCCEEEEECCC-CH---HHHHHHHHHHHH
Confidence            55666666643110  0112356777542 22   334455555444

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.28  E-value=7.9e-12  Score=106.72  Aligned_cols=150  Identities=18%  Similarity=0.112  Sum_probs=78.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc----C--C----CccccCCCchhhHHH----HHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF----H--L----DRNQSYASMPAEKNL----RGVLRSEVD   68 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~----~--~----~~~~~y~~~~~e~~~----r~~l~~~v~   68 (303)
                      +|+|+|+|||||||+|+.|++.++..++  ++..+.+...    +  +    .....+.. ..+..+    +......+.
T Consensus        11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~~--~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~i~   87 (215)
T 1nn5_A           11 LIVLEGVDRAGKSTQSRKLVEALCAAGH--RAELLRFPERSTEIGKLLSSYLQKKSDVED-HSVHLLFSANRWEQVPLIK   87 (215)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCTTSHHHHHHHHHHTTSSCCCH-HHHHHHHHHHHHTTHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCC--cEEEeeCCCCCCcHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999987543  3333332210    0  0    00011111 011100    000002344


Q ss_pred             HhcCCCCEEEEcCCCCc-----h---HH-HHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC-CHHHHHHH
Q 047717           69 RSVSKDNIIIVDSLNSI-----K---GY-RYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY-DDKIFEDL  138 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~~-----k---~~-R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~-~~e~~~~l  138 (303)
                      ..+..+..||+|...+.     .   +. +..+..+......+.++||+++|++++.+|+..|..    .+ ..+..+.+
T Consensus        88 ~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~----~~~~~~~~~~~  163 (215)
T 1nn5_A           88 EKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE----RYENGAFQERA  163 (215)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C----TTCSHHHHHHH
T ss_pred             HHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCcc----ccchHHHHHHH
Confidence            55677889999953210     0   00 111211212223467899999999999999964422    23 24566666


Q ss_pred             HHHhcCCCCCCCCCCceeeeCCC
Q 047717          139 VRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       139 ~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      ...|+.....  ...+.++|+.+
T Consensus       164 ~~~~~~~~~~--~~~~~~~Id~~  184 (215)
T 1nn5_A          164 LRCFHQLMKD--TTLNWKMVDAS  184 (215)
T ss_dssp             HHHHHHHTTC--TTSCEEEEETT
T ss_pred             HHHHHHHHHh--CCCCEEEEECC
Confidence            6666643221  12456777753

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=99.27  E-value=3.7e-11  Score=115.43  Aligned_cols=119  Identities=14%  Similarity=0.153  Sum_probs=78.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC---C-CccccCCCchhh-HHHHH-HHH---HHHHHhc--
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH---L-DRNQSYASMPAE-KNLRG-VLR---SEVDRSV--   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~---~-~~~~~y~~~~~e-~~~r~-~l~---~~v~~~L--   71 (303)
                      +|+|+|+|||||||+++.|++.++..+.+.+.+..++....   . .....|+....+ ...+. +..   ..+...+  
T Consensus        41 ~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~  120 (469)
T 1bif_A           41 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSE  120 (469)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999999876544444443322111   0 112345443221 11121 111   1224455  


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE  121 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~  121 (303)
                      ..|.++|+|++|..+.+|+.+.+.++..+..++.+++.|+...+..++..
T Consensus       121 ~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~  170 (469)
T 1bif_A          121 EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIV  170 (469)
T ss_dssp             TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHH
Confidence            56789999999999999999999999888777777777776555555544

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.27  E-value=1.9e-10  Score=99.06  Aligned_cols=154  Identities=18%  Similarity=0.149  Sum_probs=92.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CC---ccc--cCC-------CchhhHH----HH-HHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LD---RNQ--SYA-------SMPAEKN----LR-GVL   63 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~---~~~--~y~-------~~~~e~~----~r-~~l   63 (303)
                      .+|+|.|++||||||+++.|++.|...+. ..++...+.+-. +.   +.-  .+.       +...+..    .| ..+
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~-~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~   82 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLGI-RDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV   82 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCC-CcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence            48999999999999999999999987643 144444432211 00   000  000       1111211    11 123


Q ss_pred             HHHHHHhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC-
Q 047717           64 RSEVDRSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY-  130 (303)
Q Consensus        64 ~~~v~~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~-  130 (303)
                      ...+..+|..|.+||+|-..+            -..+-.++...+...-.|..+||+++|++++.+|..+|+..  +.+ 
T Consensus        83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~--dr~E  160 (213)
T 4tmk_A           83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL--DRIE  160 (213)
T ss_dssp             HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC--CTTT
T ss_pred             HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc--cchh
Confidence            334666788999999996221            11223333333434456899999999999999999999641  334 


Q ss_pred             --CHHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          131 --DDKIFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       131 --~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                        ..+.+.++...|+.-...   ..+.++|+.+
T Consensus       161 ~~~~~f~~rv~~~y~~la~~---~~~~~vIDa~  190 (213)
T 4tmk_A          161 QESFDFFNRTRARYLELAAQ---DKSIHTIDAT  190 (213)
T ss_dssp             TSCHHHHHHHHHHHHHHHHT---CTTEEEEETT
T ss_pred             hhHHHHHHHHHHHHHHHHHH---CCcEEEECCC
Confidence              357777777777642111   1357788764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.27  E-value=1.8e-11  Score=105.03  Aligned_cols=113  Identities=17%  Similarity=0.208  Sum_probs=74.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHH-----------HHHHHHHHHh
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR-----------GVLRSEVDRS   70 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r-----------~~l~~~v~~~   70 (303)
                      ++|+|.|+|||||+|+|+.|+++++..+     +..++. +   +...-..+...+.+.           +.+...+...
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~-----istGdl-l---R~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~   71 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVH-----ISTGDI-L---REAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEV   71 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEE-----EEHHHH-H---HHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeE-----EcHHHH-H---HHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHh
Confidence            3578899999999999999999997642     222211 0   000000000001111           1233355666


Q ss_pred             cCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhh
Q 047717           71 VSKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        71 L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      +.+...+|+||......+...|.......+. ..++|++++|.+++.+|+..|.
T Consensus        72 l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~  125 (206)
T 3sr0_A           72 FPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR  125 (206)
T ss_dssp             CCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             hccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence            7777789999988888877777665555554 5689999999999999999884

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.27  E-value=6.4e-11  Score=100.85  Aligned_cols=152  Identities=20%  Similarity=0.170  Sum_probs=87.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----cc---ccCCCchhh----HHHHHHHHHHHHHh
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----RN---QSYASMPAE----KNLRGVLRSEVDRS   70 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~~---~~y~~~~~e----~~~r~~l~~~v~~~   70 (303)
                      ++|+|.|+.||||||+++.|+++|...  +.+++...+.+....    +.   ....+...+    ...|..+...+..+
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~--g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~   78 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKR--GKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY   78 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            379999999999999999999999876  456666554321110    00   001111111    11122333456677


Q ss_pred             cCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 047717           71 VSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDL  138 (303)
Q Consensus        71 L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l  138 (303)
                      |..|.+||+|-..+            ...+-+++...+...-.|..++|+++|++++.+|..+|.+-    -..+.+.++
T Consensus        79 L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~----e~~ef~~rv  154 (197)
T 3hjn_A           79 LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRF----EKREFLERV  154 (197)
T ss_dssp             HTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTT----CCHHHHHHH
T ss_pred             HHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCcc----ccHHHHHHH
Confidence            89999999996321            11222333334443346889999999999999997665431    134666666


Q ss_pred             HHHhcCCCCCCCCCCceeeeCCC
Q 047717          139 VRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       139 ~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      .+.|..-...+.|  ...+|+++
T Consensus       155 ~~~y~~la~~~~~--~~~~IDa~  175 (197)
T 3hjn_A          155 REGYLVLAREHPE--RIVVLDGK  175 (197)
T ss_dssp             HHHHHHHHHHCTT--TEEEEETT
T ss_pred             HHHHHHHHHhCCC--CEEEEcCC
Confidence            6666542111111  35667654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.26  E-value=3e-12  Score=108.78  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII   77 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V   77 (303)
                      |..|+|+|+|||||||+++.|++.++..     ++..|+..   .+..-...|. ...+...+......+...+..+..|
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~g~~i~~~~~-~~~~~~~~~~e~~~l~~l~~~~~~v   98 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERFHKTVGELFT-ERGEAGFRELERNMLHEVAEFENVV   98 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCHHHHHH-HHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHhCCcHHHHHH-hcChHHHHHHHHHHHHHHhhcCCcE
Confidence            5689999999999999999999998653     33323210   1110001111 1122333322222333444444444


Q ss_pred             EEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH-Hh
Q 047717           78 IVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK-ER  122 (303)
Q Consensus        78 IvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~-~R  122 (303)
                      |..| .....++..+ ...+.   ...+||+++|.+++.+|+. .|
T Consensus        99 i~~g-gg~~~~~~~~-~~l~~---~~~vi~L~~~~e~l~~Rl~~~~  139 (199)
T 3vaa_A           99 ISTG-GGAPCFYDNM-EFMNR---TGKTVFLNVHPDVLFRRLRIAK  139 (199)
T ss_dssp             EECC-TTGGGSTTHH-HHHHH---HSEEEEEECCHHHHHHHHHHTG
T ss_pred             EECC-CcEEccHHHH-HHHHc---CCEEEEEECCHHHHHHHHhcCC
Confidence            4433 2222222222 22222   3469999999999999998 44

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.25  E-value=6.3e-11  Score=98.93  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=67.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII   77 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V   77 (303)
                      .+|+|+|+|||||||+|+.|++.++..+++.+.++.....    .+..-...+...  +...+......+...+..+  |
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~l~~~--~   80 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERG--DLVPDDLILELIREELAER--V   80 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHHHCCSE--E
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcC--CcCCHHHHHHHHHHHhcCC--E
Confidence            3799999999999999999999887532111100000000    000000000000  0000111222344445544  9


Q ss_pred             EEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhh
Q 047717           78 IVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        78 IvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      |+|+.......+..+..++...+. +..+||+++|++++.+|+.+|.
T Consensus        81 i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~  127 (186)
T 3cm0_A           81 IFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA  127 (186)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            999977665555555555555443 5689999999999999999885

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.24  E-value=8.9e-11  Score=97.73  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=72.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VI   78 (303)
                      .+|+|+|++||||||+++.|++.+...  +..++.++.+.+.  ......|.....+..++.. ... ...+ ..+.+++
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~~~--g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~   81 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLVCH--GIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRI-AEV-AKLFADAGLVCI   81 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHH-HHH-HHHHHHTTCEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhhC--CCcEEEECChHHHHHHhhccccccccHHHHHHHH-HHH-HHHHHHCCCEEE
Confidence            479999999999999999999988432  3345555432211  1111123222223333322 111 1223 4566666


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R  122 (303)
                      .+....+...+.++..+.+..+.++.+|||+||++++.+|+.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           82 TSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             EECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred             EecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence            66654444556666666666677889999999999999997643

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.23  E-value=1.3e-11  Score=120.46  Aligned_cols=114  Identities=18%  Similarity=0.302  Sum_probs=76.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|+|+|+|||||||+|+.|++.++..  +..+.+++.+.+  .+.....|.+......++ .+...+...++.|..||+
T Consensus       373 ~~I~l~G~~GsGKSTia~~La~~L~~~--G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~-~i~~~~~~~l~~G~~VI~  449 (546)
T 2gks_A          373 FCVWLTGLPCAGKSTIAEILATMLQAR--GRKVTLLDGDVVRTHLSRGLGFSKEDRITNIL-RVGFVASEIVKHNGVVIC  449 (546)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECHHHHHHHTCTTCCSSHHHHHHHHH-HHHHHHHHHHHTTCEEEE
T ss_pred             eEEEccCCCCCCHHHHHHHHHHHhhhc--CCeEEEECchHhhhhhcccccccHHHHHHHHH-HHHHHHHHHHhCCCEEEE
Confidence            479999999999999999999998764  344555553321  111112333222222222 233345556678899999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK  120 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~  120 (303)
                      |+++.++.+|.++..+++.  ..+++|||++|.++|.+|+.
T Consensus       450 d~~~~~~~~r~~~~~~l~~--~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          450 ALVSPYRSARNQVRNMMEE--GKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             ECCCCCHHHHHHHHTTSCT--TCEEEEEEECCGGGHHHHCC
T ss_pred             EcCCCCHHHHHHHHHHhhc--CCEEEEEEeCCHHHHHHHhh
Confidence            9988888877776654433  24689999999999999986

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.23  E-value=4.9e-11  Score=104.72  Aligned_cols=110  Identities=15%  Similarity=0.088  Sum_probs=68.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CC-------------ccccCCCchhhHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LD-------------RNQSYASMPAEKNLRGVLRSEV   67 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~-------------~~~~y~~~~~e~~~r~~l~~~v   67 (303)
                      ++|+|+|+|||||||+|+.|++.++..     ++..++..-. +.             ..+.+..   ...+.    ..+
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~-----~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~---~~~~~----~~~   97 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKKSHCYC-----HLSTGDLLREAAEKKTELGLKIKNIINEGKLVD---DQMVL----SLV   97 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCC---HHHHH----HHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCe-----EEecHHHHHHHHhccchHHHHHHHHHhcCCCCc---HHHHH----HHH
Confidence            589999999999999999999998653     2332221000 00             0001111   11111    223


Q ss_pred             HHhcC---CCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhh
Q 047717           68 DRSVS---KDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        68 ~~~L~---~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      ...+.   .+..+|+|+..........+.......+ .+..+|++++|++++.+|+.+|.
T Consensus        98 ~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~  157 (243)
T 3tlx_A           98 DEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL  157 (243)
T ss_dssp             HHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             HHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence            33333   3678999996666555555555444433 45689999999999999999986

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.23  E-value=2.8e-11  Score=104.23  Aligned_cols=118  Identities=13%  Similarity=0.159  Sum_probs=69.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---------cCCCccccCC--CchhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---------FHLDRNQSYA--SMPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---------~~~~~~~~y~--~~~~e~~~r~~l~~~v~~   69 (303)
                      |+.|+|+|+|||||||+|+.|++.++..     ++..++.-         ++..-...+.  ...........+...+..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~   79 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGLA-----HLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDL   79 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCce-----EEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhc
Confidence            6789999999999999999999998753     33332210         0000000000  000011111122222222


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                       +..+..||+||..........+..+.+..+ .+..+||+++|++++.+|+..|..
T Consensus        80 -~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~  134 (217)
T 3be4_A           80 -GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCT  134 (217)
T ss_dssp             -TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred             -cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCC
Confidence             345778999986555444444444333443 466899999999999999998853

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.22  E-value=4e-12  Score=112.80  Aligned_cols=61  Identities=15%  Similarity=0.117  Sum_probs=41.8

Q ss_pred             CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC----CCC----CCCceeeeCCC
Q 047717          101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR----RNR----WDSPLFELCPY  161 (303)
Q Consensus       101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~----~~r----wd~pl~~i~~~  161 (303)
                      .+.++||+++|++++.+|+.+|++..+...+.+.++.+..+|+....    ...    ...|.++|+++
T Consensus       174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~  242 (263)
T 1p5z_B          174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVN  242 (263)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECC
T ss_pred             CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECC
Confidence            57789999999999999999886532223467778887777764210    011    13578888875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.22  E-value=2.6e-10  Score=99.78  Aligned_cols=154  Identities=18%  Similarity=0.133  Sum_probs=85.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccC--------CCchhhHH----HH-HHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSY--------ASMPAEKN----LR-GVLRS   65 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y--------~~~~~e~~----~r-~~l~~   65 (303)
                      .+|+|.|++||||||+++.|++.+...+... ++...+.+-....   ....        -+...+..    -| ..+..
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~-~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~  106 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDH-ITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVEN  106 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHHTTCCC-EEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCCe-eeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999998764321 4443332110000   0000        01111210    01 12333


Q ss_pred             HHHHhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC---
Q 047717           66 EVDRSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY---  130 (303)
Q Consensus        66 ~v~~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~---  130 (303)
                      .+..+|..|.+||+|-..+            -..+-+++...+...-.|..+||+++|++++.+|+.+|+.  .+.+   
T Consensus       107 ~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~--~dr~E~~  184 (236)
T 3lv8_A          107 VIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE--LDRIEKM  184 (236)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C--CCTTTTS
T ss_pred             HHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC--cchhhhh
Confidence            4566788999999995211            1112233333333334688999999999999999999863  1233   


Q ss_pred             CHHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          131 DDKIFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       131 ~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      ..+.+.++...|+.-...  ... .++|+.+
T Consensus       185 ~~~~~~rv~~~y~~la~~--~~~-~~vIDa~  212 (236)
T 3lv8_A          185 DISFFERARERYLELANS--DDS-VVMIDAA  212 (236)
T ss_dssp             CHHHHHHHHHHHHHHHHH--CTT-EEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHH--CCC-EEEEeCC
Confidence            357778887777642110  111 6777754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.21  E-value=7.3e-12  Score=107.93  Aligned_cols=119  Identities=13%  Similarity=0.153  Sum_probs=68.8

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---------cCCCccccCCC--chhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---------FHLDRNQSYAS--MPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---------~~~~~~~~y~~--~~~e~~~r~~l~~~v~~   69 (303)
                      |++|+|+|+|||||||+|+.|++.++..     ++..++.-         .+..-...+..  ..........+...+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~   78 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFHAA-----HLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN   78 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCce-----EEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHh
Confidence            5689999999999999999999998753     33322110         00000000000  00011111123333321


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ....+..||+|+.......+..+..++...+ .+..+||+++|.+++.+|+..|..
T Consensus        79 ~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~  134 (220)
T 1aky_A           79 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLI  134 (220)
T ss_dssp             CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred             ccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCc
Confidence            2234567999985444444555544444444 345799999999999999998853

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.21  E-value=8.1e-12  Score=104.41  Aligned_cols=106  Identities=22%  Similarity=0.198  Sum_probs=59.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII   77 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V   77 (303)
                      |+.|+|+|+|||||||+|+.|++.++..     ++..|+.   ..+..-...+. ...+..++..-...+.........|
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~v   78 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRTGADIAWIFE-MEGEAGFRRREREMIEALCKLDNII   78 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHTSCHHHHHH-HHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCChhhHHH-HhCHHHHHHHHHHHHHHHHhcCCcE
Confidence            3589999999999999999999998754     3322221   01110001111 1122333322222333333445556


Q ss_pred             EEcCCC--CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717           78 IVDSLN--SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN  119 (303)
Q Consensus        78 IvD~~n--~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~  119 (303)
                      |..+..  .....|..    .+..+   .+||+++|.+++.+|+
T Consensus        79 i~~gg~~~~~~~~~~~----l~~~~---~vi~L~~~~e~l~~Rl  115 (185)
T 3trf_A           79 LATGGGVVLDEKNRQQ----ISETG---VVIYLTASIDTQLKRI  115 (185)
T ss_dssp             EECCTTGGGSHHHHHH----HHHHE---EEEEEECCHHHHHHHH
T ss_pred             EecCCceecCHHHHHH----HHhCC---cEEEEECCHHHHHHHH
Confidence            655533  22333322    23322   6999999999999999

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.20  E-value=1.1e-10  Score=100.13  Aligned_cols=114  Identities=11%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCcc--------ccCCCc--hhhHHHHHHHHHHHHHhc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRN--------QSYASM--PAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~--------~~y~~~--~~e~~~r~~l~~~v~~~L   71 (303)
                      .|+|+|+|||||||+|+.|++.++..     ++..++.... ....        ..+...  .........+...+.. .
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~-~   75 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGK-D   75 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTS-G
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-c
Confidence            48899999999999999999988653     3333221000 0000        000000  0011112122222221 2


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHh
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R  122 (303)
                      ..+..+|+|+.......+..+...+...+. +..+||+++|.+++.+|+.+|
T Consensus        76 ~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3dl0_A           76 DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR  127 (216)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence            336789999977777666666665555554 347999999999999999998

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.19  E-value=1.2e-10  Score=99.65  Aligned_cols=111  Identities=16%  Similarity=0.159  Sum_probs=68.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CC-------------ccccCCCchhhHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LD-------------RNQSYASMPAEKNLRGVLRSEVD   68 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~-------------~~~~y~~~~~e~~~r~~l~~~v~   68 (303)
                      .|+|+|+|||||||+|+.|++.++..     ++..++.... ..             ....+..   .......+...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~l~   73 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP---DEVTIGIVHERLS   73 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Confidence            58899999999999999999998653     3333221000 00             0000110   1111212222221


Q ss_pred             HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHh
Q 047717           69 RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R  122 (303)
                      . ...+..+|+|+.......+..+...+...+. +..+||+++|.+++.+|+.+|
T Consensus        74 ~-~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           74 K-DDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             S-GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             c-ccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            1 1236789999976666666666665555554 347999999999999999998

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.18  E-value=9.8e-11  Score=101.33  Aligned_cols=113  Identities=12%  Similarity=0.053  Sum_probs=68.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-cCCCcc--------ccCCCc--hhhHHHHHHHHHHHHHhc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-FHLDRN--------QSYASM--PAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-~~~~~~--------~~y~~~--~~e~~~r~~l~~~v~~~L   71 (303)
                      +|+|+|+|||||||+|+.|++.++..     ++..++.- ..+...        ..+...  ....    .+...+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~-----~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~----~~~~~i~~~l   72 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLA-----HIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDD----ITIPMVLETL   72 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHH----HHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe-----EEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHH----HHHHHHHHHH
Confidence            79999999999999999999998642     33332210 000000        000000  0011    1222333334


Q ss_pred             CC--CCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717           72 SK--DNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        72 ~~--~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ..  +..||+|+......+...+...++..+ .+..+||+++|++++.+|+..|..
T Consensus        73 ~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~  128 (223)
T 2xb4_A           73 ESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRI  128 (223)
T ss_dssp             HHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCE
T ss_pred             hcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccC
Confidence            33  789999986554455555555444444 466899999999999999998863

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.18  E-value=3.9e-11  Score=104.40  Aligned_cols=156  Identities=10%  Similarity=0.082  Sum_probs=87.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccC--CccEEEecCCccCCCc---cccCC----CchhhHH----HH-HHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEA--KETVRIIDEASFHLDR---NQSYA----SMPAEKN----LR-GVLRSEV   67 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~--~~~v~~~~~~~~~~~~---~~~y~----~~~~e~~----~r-~~l~~~v   67 (303)
                      .+|+|.|++||||||+++.|++.+...++  +..++...+.+-....   ...+.    +...+..    -| +.+...+
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~~i  105 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLALVI  105 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999976410  2344444432210000   00110    1111110    01 1233345


Q ss_pred             HHhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC---H
Q 047717           68 DRSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD---D  132 (303)
Q Consensus        68 ~~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~---~  132 (303)
                      ..+|..|.+||+|-..+            ...+-+++...+...-.|..+|||++|++++.+|+.+|+.  .+.++   .
T Consensus       106 ~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~--~dr~E~~~~  183 (227)
T 3v9p_A          106 EPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM--PDKFESESD  183 (227)
T ss_dssp             HHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC--C---CCHHH
T ss_pred             HHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC--ccchhhhhH
Confidence            56778999999995321            1122333333333345689999999999999999998853  23444   3


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          133 KIFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       133 e~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      +.++++...|+.-..  ....+.++|+.+
T Consensus       184 ef~~rv~~~Y~~la~--~~~~~~~vIDa~  210 (227)
T 3v9p_A          184 AFFARTRAEYLRRAQ--EAPHRFVIVDSS  210 (227)
T ss_dssp             HHHHHHHHHHHHHHH--HCTTTEEEEETT
T ss_pred             HHHHHHHHHHHHHHH--HhcCCEEEEeCC
Confidence            677777777764211  112357888865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.18  E-value=3.5e-11  Score=102.10  Aligned_cols=113  Identities=15%  Similarity=0.189  Sum_probs=69.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC--------ccCCC-------ccccCCCchhhHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA--------SFHLD-------RNQSYASMPAEKNLRGVLRS   65 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~--------~~~~~-------~~~~y~~~~~e~~~r~~l~~   65 (303)
                      |.+|+|+|+|||||||+|+.|++.++..     ++..|+.        +....       ..+.+..   .......+..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~-----~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~---~~~~~~~l~~   86 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDYSFV-----HLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP---QEITLALLRN   86 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSCE-----EEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCC---HHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCce-----EEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCC---HHHHHHHHHH
Confidence            6799999999999999999999988643     2222210        00000       0000110   1112224444


Q ss_pred             HHHHhcCCC-CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           66 EVDRSVSKD-NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        66 ~v~~~L~~~-~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+...+..| ..+|+||..........+.   .....+.++|||++|.+++.+|+.+|..
T Consensus        87 ~i~~~l~~g~~~~i~dg~~~~~~~~~~~~---~~~~~~~~~i~l~~~~e~~~~Rl~~R~~  143 (203)
T 1ukz_A           87 AISDNVKANKHKFLIDGFPRKMDQAISFE---RDIVESKFILFFDCPEDIMLERLLERGK  143 (203)
T ss_dssp             HHHHHHHTTCCEEEEETCCCSHHHHHHHH---HHTCCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCCeEEEeCCCCCHHHHHHHH---HhcCCCCEEEEEECCHHHHHHHHHhccc
Confidence            555556665 6899999765444433322   2223356799999999999999998863

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.17  E-value=4e-11  Score=103.60  Aligned_cols=120  Identities=17%  Similarity=0.205  Sum_probs=69.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc---ccCCC---chhhHHHHHHHHHHHHHhcCCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN---QSYAS---MPAEKNLRGVLRSEVDRSVSKDN   75 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~---~~y~~---~~~e~~~r~~l~~~v~~~L~~~~   75 (303)
                      ++|+|.|+|||||+|+|+.|+++++..+++..-++.....-+....   ..|-+   -.....+...+...+.+......
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~~~~  109 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKNC  109 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTTTCS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcccccc
Confidence            5899999999999999999999997643221100000000000000   00000   00012222244444444455667


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+|+||......+..   .+.+......++|++++|.+++.+|+..|..
T Consensus       110 g~ilDGfPRt~~Qa~---~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~  155 (217)
T 3umf_A          110 HFLIDGYPRELDQGI---KFEKEVCPCLCVINFDVSEEVMRKRLLKRAE  155 (217)
T ss_dssp             EEEEETBCSSHHHHH---HHHHHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred             CcccccCCCcHHHHH---HHHHhCCccCEEEeccCCHHHHHHHHhcccc
Confidence            899999766555433   3334455677899999999999999998864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.14  E-value=1.7e-11  Score=105.82  Aligned_cols=119  Identities=10%  Similarity=0.091  Sum_probs=61.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCC--chhhHHHHHHHHHHHHH-hcCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYAS--MPAEKNLRGVLRSEVDR-SVSK   73 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~--~~~e~~~r~~l~~~v~~-~L~~   73 (303)
                      |++|+|+|+|||||||+|+.|++.++..+++.+.++....    ..+..-...+..  ..........+...+.. .+..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQE   84 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccccC
Confidence            5689999999999999999999999754322211110000    000000000000  00011111122222211 1122


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                       ..+|+||........   ..+......+.++||+++|.+++.+|+..|.
T Consensus        85 -~~~vidg~~~~~~~~---~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~  130 (222)
T 1zak_A           85 -NGWLLDGYPRSYSQA---MALETLEIRPDTFILLDVPDELLVERVVGRR  130 (222)
T ss_dssp             -TCEEEESCCCSHHHH---HHHHTTTCCCSEEEEEECCHHHHHHHHTTEE
T ss_pred             -CcEEEECCCCCHHHH---HHHHHcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence             345569844333222   2222222235689999999999999998774

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.14  E-value=2.7e-11  Score=101.21  Aligned_cols=156  Identities=16%  Similarity=0.166  Sum_probs=80.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      ++|+|+|+|||||||+|+.|++.++..     ++..|+.   ..+......|.. ..+..++......+...+.....||
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~vi   76 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRTGRSIADIFAT-DGEQEFRRIEEDVVRAALADHDGVL   76 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHSSCHHHHHHH-HCHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHcCCCHHHHHHH-hChHHHHHHHHHHHHHHHhcCCeEE
Confidence            589999999999999999999998754     3332321   011100011110 1112222222223333333445566


Q ss_pred             EcCCCCc--hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717           79 VDSLNSI--KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDSP  154 (303)
Q Consensus        79 vD~~n~~--k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~p  154 (303)
                      .++...+  ...|+.+    + .+   .+|||+||.+++.+|+.+|.....  .....+.+..+....++...    ..+
T Consensus        77 ~~g~~~v~~~~~~~~l----~-~~---~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~----~~~  144 (184)
T 2iyv_A           77 SLGGGAVTSPGVRAAL----A-GH---TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYR----RVA  144 (184)
T ss_dssp             ECCTTGGGSHHHHHHH----T-TS---CEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHH----HHC
T ss_pred             ecCCcEEcCHHHHHHH----c-CC---eEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHh----ccC
Confidence            6554322  2233322    1 23   589999999999999988753211  01123456655432221000    123


Q ss_pred             eeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717          155 LFELCPYKDAIENSSAAILDAVAYLTKK  182 (303)
Q Consensus       155 l~~i~~~~~~~~~~~~~~~ei~~~l~~~  182 (303)
                      .++|+++...       .+++++.|.+.
T Consensus       145 ~~~Idt~~~s-------~ee~~~~I~~~  165 (184)
T 2iyv_A          145 TMRVDTNRRN-------PGAVVRHILSR  165 (184)
T ss_dssp             SEEEECSSSC-------HHHHHHHHHTT
T ss_pred             CEEEECCCCC-------HHHHHHHHHHH
Confidence            5777765222       46666666653

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.11  E-value=1.3e-11  Score=102.52  Aligned_cols=108  Identities=19%  Similarity=0.089  Sum_probs=57.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII   77 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V   77 (303)
                      |+.|+|+|+|||||||+|+.|++.++..+     +-.|+.   ..+......+. ...+...+......+.........|
T Consensus         4 m~~i~i~G~~GsGKsTla~~La~~l~~~~-----~d~d~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~~l~~~~~~v   77 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKDLDLVF-----LDSDFLIEQKFNQKVSEIFE-QKRENFFREQEQKMADFFSSCEKAC   77 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHHHTCEE-----EEHHHHHHHHHTSCHHHHHH-HHCHHHHHHHHHHHHHHHTTCCSEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCCE-----EcccHHHHHHcCCCHHHHHH-HcCHHHHHHHHHHHHHHHHccCCEE
Confidence            55799999999999999999999987532     222211   01110000110 0012222222222233333344444


Q ss_pred             EEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           78 IVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        78 IvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      |..+....-. +.     .+..   ..+||+++|.+++.+|+.+|.
T Consensus        78 i~~g~~~~~~-~~-----l~~~---~~~i~l~~~~e~~~~R~~~r~  114 (175)
T 1via_A           78 IATGGGFVNV-SN-----LEKA---GFCIYLKADFEYLKKRLDKDE  114 (175)
T ss_dssp             EECCTTGGGS-TT-----GGGG---CEEEEEECCHHHHTTCCCGGG
T ss_pred             EECCCCEehh-hH-----HhcC---CEEEEEeCCHHHHHHHHhccc
Confidence            4434332211 21     1222   359999999999999998873

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.10  E-value=8e-10  Score=95.79  Aligned_cols=168  Identities=15%  Similarity=0.082  Sum_probs=82.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc-ccCCccEEE-ecCCccC-CCc--cccCC-----CchhhH----HHH-HHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE-SEAKETVRI-IDEASFH-LDR--NQSYA-----SMPAEK----NLR-GVLRSE   66 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~-~~~~~~v~~-~~~~~~~-~~~--~~~y~-----~~~~e~----~~r-~~l~~~   66 (303)
                      .+|+|.|++||||||+++.|++.+.. .+  ..++. ..+.+-. +..  ...|.     +...+-    .-| ..+...
T Consensus        22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g--~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~~~~   99 (223)
T 3ld9_A           22 MFITFEGIDGSGKTTQSHLLAEYLSEIYG--VNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFVKI   99 (223)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHHC--GGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhccC--ceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999987 53  34444 3222100 000  00111     111111    001 122233


Q ss_pred             HHHhcCCCCEEEEcCCCC----chH--------HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHH
Q 047717           67 VDRSVSKDNIIIVDSLNS----IKG--------YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKI  134 (303)
Q Consensus        67 v~~~L~~~~~VIvD~~n~----~k~--------~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~  134 (303)
                      +..+|..|.+||+|-..+    +.+        +-.++...+.. -.|..+||+++|++++.+|. +|.+  .+..+.+.
T Consensus       100 I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr--~E~~~~e~  175 (223)
T 3ld9_A          100 IKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNG--YEFADMEF  175 (223)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------------CHHH
T ss_pred             HHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCc--cccchHHH
Confidence            555778899999997321    111        11122222222 36889999999999999998 4433  12224577


Q ss_pred             HHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHH
Q 047717          135 FEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYL  179 (303)
Q Consensus       135 ~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l  179 (303)
                      +.++...|+.-...  ...+.++|+.+ .+++.. ..+.++++.+
T Consensus       176 ~~rv~~~y~~la~~--~~~~~~vIDa~-~sieeV-~~I~~~l~~~  216 (223)
T 3ld9_A          176 YYRVRDGFYDIAKK--NPHRCHVITDK-SETYDI-DDINFVHLEV  216 (223)
T ss_dssp             HHHHHHHHHHHHHH--CTTTEEEEESS-CSSSCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--CCCCEEEEcCC-CCHHHH-HHHHHHHHHH
Confidence            77777777542111  12367888865 334333 3344444433

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.08  E-value=5.4e-11  Score=98.10  Aligned_cols=108  Identities=18%  Similarity=0.083  Sum_probs=59.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII   77 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V   77 (303)
                      |++|+|+|+|||||||+|+.|++.++..     ++..|+..   .+......+. ...+..++ .+...+...+..+..|
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~d~~~~~~~g~~~~~~~~-~~~~~~~~-~~~~~~~~~l~~~~~v   74 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQHTSGMTVADVVA-AEGWPGFR-RRESEALQAVATPNRV   74 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHCSCHHHHHH-HHHHHHHH-HHHHHHHHHHCCSSEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCc-----EEcccHHHHHHhCCCHHHHHH-HcCHHHHH-HHHHHHHHHhhcCCeE
Confidence            5799999999999999999999998753     22222110   0110000110 01112222 1211222234455566


Q ss_pred             EEcCCC--CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH--Hh
Q 047717           78 IVDSLN--SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK--ER  122 (303)
Q Consensus        78 IvD~~n--~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~--~R  122 (303)
                      |.++..  .....+..+    +.   ...+|||++|.+++.+|+.  .|
T Consensus        75 i~~g~~~~~~~~~~~~l----~~---~~~~i~l~~~~e~~~~R~~~~~r  116 (173)
T 1e6c_A           75 VATGGGMVLLEQNRQFM----RA---HGTVVYLFAPAEELALRLQASLQ  116 (173)
T ss_dssp             EECCTTGGGSHHHHHHH----HH---HSEEEEEECCHHHHHHHHHHHHC
T ss_pred             EECCCcEEeCHHHHHHH----Hc---CCeEEEEECCHHHHHHHHhhccC
Confidence            655532  223333322    22   2369999999999999998  77

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.07  E-value=6e-10  Score=92.98  Aligned_cols=121  Identities=15%  Similarity=0.245  Sum_probs=62.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC--------ccCCCccccCCCch-hhHHHHHHHHHHHHHhcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA--------SFHLDRNQSYASMP-AEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~--------~~~~~~~~~y~~~~-~e~~~r~~l~~~v~~~L~   72 (303)
                      .+|+|+|+|||||||+|+.|++.++..+....++..++.        +........+.... ....+...+...+.... 
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-   82 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA-   82 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhc-
Confidence            389999999999999999999999843222333433321        11001111111111 11112212222233333 


Q ss_pred             CCCEEEEcCCCCch---HHHHHH-HHHHHHcCCcEEEEEEecCHHHHHH-HHHH--hhh
Q 047717           73 KDNIIIVDSLNSIK---GYRYEL-WCLARAAGIRYCVLYCDLEEDHCRK-WNKE--RHE  124 (303)
Q Consensus        73 ~~~~VIvD~~n~~k---~~R~~l-~~~ak~~~~~~~vI~l~~~~e~~~~-R~~~--R~~  124 (303)
                      .+..||+|+.....   ++...+ ..+.+.... ..+||+++|++++.+ |+..  |++
T Consensus        83 ~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~rRl~~~~R~r  140 (192)
T 1kht_A           83 KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNP-DLIIVVETTGDEILMRRMSDETRVR  140 (192)
T ss_dssp             TTSCEEEECCSEEEETTEEEESSCHHHHHHHCC-SEEEEEECCHHHHHHHHHTSSSCSS
T ss_pred             cCCeEEEccceeccccccccccCcHHHHhccCC-CEEEEEeCCHHHHHHHHhhhcccCC
Confidence            45578889854311   110000 011222233 349999999999996 8877  654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.06  E-value=2.4e-11  Score=101.22  Aligned_cols=102  Identities=17%  Similarity=0.153  Sum_probs=56.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--cCCC--ccccCCCc-hhhHHHHHHHHHHHHHhcCCCCE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--FHLD--RNQSYASM-PAEKNLRGVLRSEVDRSVSKDNI   76 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--~~~~--~~~~y~~~-~~e~~~r~~l~~~v~~~L~~~~~   76 (303)
                      ++|+|+|+|||||||+++.|++.++..     ++..++..  ....  ....+... ..+..+..    .+...+..|..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~~~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~   82 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLAREEQLYDGYDEEYDCPILDEDRVVD----ELDNQMREGGV   82 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTCEEEEETTTTEEEECHHHHHH----HHHHHHHHCCE
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhCCe-----EEEHHHHHhhcchhhhhhhhhcCccCChHHHHH----HHHHHHhcCCE
Confidence            479999999999999999999998754     23222210  0000  00111111 11222222    22334444544


Q ss_pred             EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      | +|..+.. .+.        . +....+||++||.+++.+|+.+|+
T Consensus        83 v-v~~~~~~-~~~--------~-~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           83 I-VDYHGCD-FFP--------E-RWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             E-EECSCCT-TSC--------G-GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             E-EEechhh-hcc--------h-hcCCEEEEEECCHHHHHHHHHHcC
Confidence            4 4543311 100        0 114579999999999999999885

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.06  E-value=9.7e-11  Score=101.93  Aligned_cols=118  Identities=12%  Similarity=0.070  Sum_probs=67.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCcc--------ccCCC--chhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRN--------QSYAS--MPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~--------~~y~~--~~~e~~~r~~l~~~v~~   69 (303)
                      |+.|+|+|+|||||||+|+.|+++++..     ++..++.-.. ....        ..+..  ..........+...+..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~   90 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFCVC-----HLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLET   90 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCc-----eecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhc
Confidence            5689999999999999999999998743     3333221000 0000        00000  00011111122222211


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHc-CCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAA-GIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~-~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      . ..+..||+|+..........+..++... ..+..+||+++|.+++.+|+..|..
T Consensus        91 ~-~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~  145 (233)
T 1ak2_A           91 P-PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLI  145 (233)
T ss_dssp             G-GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEE
T ss_pred             c-cccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence            1 1245689998554444455555444433 3467899999999999999998853

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.06  E-value=3.2e-10  Score=99.10  Aligned_cols=80  Identities=14%  Similarity=0.085  Sum_probs=52.3

Q ss_pred             CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCC--------CCCCCceeeeCCCCcccccchHHH
Q 047717          101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRR--------NRWDSPLFELCPYKDAIENSSAAI  172 (303)
Q Consensus       101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~--------~rwd~pl~~i~~~~~~~~~~~~~~  172 (303)
                      .+..+||+++|++++.+|+.+|++..+...+.+.+..+...|+.-...        .....+.++|+++. +++.....+
T Consensus       149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~-~~~~v~~~i  227 (241)
T 2ocp_A          149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVND-DFSEEVTKQ  227 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCS-CTTTCHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCC-ChhhCHHHH
Confidence            578899999999999999998875322222467777777777641100        01345788898764 444445566


Q ss_pred             HHHHHHHHh
Q 047717          173 LDAVAYLTK  181 (303)
Q Consensus       173 ~ei~~~l~~  181 (303)
                      +++++.|.+
T Consensus       228 ~~i~~~i~~  236 (241)
T 2ocp_A          228 EDLMREVNT  236 (241)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.03  E-value=1.5e-09  Score=91.81  Aligned_cols=148  Identities=15%  Similarity=0.116  Sum_probs=77.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC----CccccCC-----CchhhHHH----HHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL----DRNQSYA-----SMPAEKNL----RGVLRSEVD   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~----~~~~~y~-----~~~~e~~~----r~~l~~~v~   68 (303)
                      .+|+|+|+|||||||+++.|++.++    +..++.+++.....    .-...|.     +...+..+    |......+.
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l~----g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~   80 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESIP----ANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQ   80 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTSC----GGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHC----CCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999872    12344444322000    0000111     11111100    000012334


Q ss_pred             HhcCCCCEEEEcCCCCch-------HH-HHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC-HHHHHHHH
Q 047717           69 RSVSKDNIIIVDSLNSIK-------GY-RYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD-DKIFEDLV  139 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~~k-------~~-R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~-~e~~~~l~  139 (303)
                      ..+..+..||+|...+..       +. +..+..+......+.++||+++|++++.+   +|+.   +.+. .+...++.
T Consensus        81 ~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~---d~~e~~~~~~rl~  154 (204)
T 2v54_A           81 EQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGE---EIYEDVTFQQKVL  154 (204)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSS---STTCCSHHHHHHH
T ss_pred             HHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCc---ccccHHHHHHHHH
Confidence            456678899999743211       01 11122222222346789999999999887   4532   2222 35666666


Q ss_pred             HHhcCCCCCCCCCCceeeeCCC
Q 047717          140 RRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       140 ~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      ..|+.....  .....++++++
T Consensus       155 ~~y~~~~~~--~~~~~~~Id~~  174 (204)
T 2v54_A          155 QEYKKMIEE--GDIHWQIISSE  174 (204)
T ss_dssp             HHHHHHHTT--CSSCEEEECTT
T ss_pred             HHHHHHHHh--CCCcEEEEECC
Confidence            666543221  12356778753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.02  E-value=2.6e-09  Score=104.24  Aligned_cols=168  Identities=16%  Similarity=0.220  Sum_probs=80.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|+|+|++||||||+++.|+..+.... +..+.+++.+.+.  ......|.....+...+ .+...++.....+.++|.
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L~~~~-G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r-~i~~v~q~l~~~~~ivi~  447 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARLMEMG-GRCVTLLDGDIVRRHLSSELGFSKAHRDVNVR-RIGFVASEITKNRGIAIC  447 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHTTC-SSCEEEESSHHHHHHTTSSCCCSHHHHHHHHH-HHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECCCCChHHHHHHHHHHhhcccC-CceEEEECCcHHHHhhccccCCCHHHHHHHHH-HHHHHHHHHHhcCCEEEE
Confidence            3799999999999999999999987431 1234445543221  11111233211122222 222222233346678888


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeC
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELC  159 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~  159 (303)
                      .+.......|.....+.+..+ .+.+||+++|.++|.+|.. |+--  .......+..+...   -.+-+.|..+-++|+
T Consensus       448 ~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~-r~l~--~~~~~~~i~~l~~~---r~~~e~P~~adl~Id  520 (552)
T 3cr8_A          448 APIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR-KGLY--AKARAGLIPEFTGV---SDPYEVPETPELAID  520 (552)
T ss_dssp             CCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------------------------------CCCCCCSSCSEEEC
T ss_pred             ecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc-cccc--ccccHhHHHHHHhc---cccccCCCCCCEEEE
Confidence            775444566777777777766 6889999999999999964 2210  00011223333321   111222344668888


Q ss_pred             CCCcccccchHHHHHHHHHHHh
Q 047717          160 PYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       160 ~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      ++...+   ++.+++|++.|.+
T Consensus       521 t~~~s~---~e~v~~Il~~L~~  539 (552)
T 3cr8_A          521 TTGLAI---DEAVQQILLKLEH  539 (552)
T ss_dssp             CSSCCH---HHHHHHHHHHHHH
T ss_pred             CCCCCH---HHHHHHHHHHHHh
Confidence            753332   3445666665543

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.01  E-value=1.1e-10  Score=101.00  Aligned_cols=112  Identities=12%  Similarity=0.070  Sum_probs=62.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---c------CCCccccCCC--chhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---F------HLDRNQSYAS--MPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~------~~~~~~~y~~--~~~e~~~r~~l~~~v~~   69 (303)
                      |++|+|+|+|||||||+|+.|++.++..     ++..++.-   .      +..-...+..  ..........+...+..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~   81 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFELK-----HLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKN   81 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSSSE-----EEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCe-----EEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhc
Confidence            4689999999999999999999998653     23222110   0      0000000000  00011111122222221


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      .  .+..||+|+..........+    .....+..+||+++|.+++.+|+..|.
T Consensus        82 ~--~~~~~vid~~~~~~~~~~~l----~~~~~~~~vi~L~~~~~~~~~R~~~R~  129 (227)
T 1zd8_A           82 L--TQYSWLLDGFPRTLPQAEAL----DRAYQIDTVINLNVPFEVIKQRLTARW  129 (227)
T ss_dssp             C--TTSCEEEESCCCSHHHHHHH----HTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred             c--cCCCEEEeCCCCCHHHHHHH----HHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence            1  35678899965443322212    122335579999999999999998874

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.00  E-value=5.4e-09  Score=87.52  Aligned_cols=161  Identities=14%  Similarity=0.095  Sum_probs=84.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCc----hhhHHHHHHHHHHHHHhcCCCCEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASM----PAEKNLRGVLRSEVDRSVSKDNII   77 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~----~~e~~~r~~l~~~v~~~L~~~~~V   77 (303)
                      .+|+|+|++||||||+++.|+..++.     .+ .++.+.+.......|...    .....+...+...+...+..+..+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-----~~-~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   76 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDN-----SA-YIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDV   76 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSS-----EE-EEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCC-----eE-EEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence            37899999999999999999875431     12 222211110000111111    111122223333333444566788


Q ss_pred             EEcCCCCchHHHHHHHHHHH--HcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717           78 IVDSLNSIKGYRYELWCLAR--AAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL  155 (303)
Q Consensus        78 IvD~~n~~k~~R~~l~~~ak--~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl  155 (303)
                      |+|+.. ....+..+..+++  ..+....++++.+|.+++.+|...|..+  +..+++.+.. ...++.+..     ...
T Consensus        77 ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d--~~ld~~~~~~-~~~~~~~~~-----~~~  147 (189)
T 2bdt_A           77 VLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD--EQMGERCLEL-VEEFESKGI-----DER  147 (189)
T ss_dssp             EEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC------CGGGGHH-HHHHHHTTC-----CTT
T ss_pred             EEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc--ccCCHHHHHH-HHHHhhcCC-----Ccc
Confidence            999853 3444444444433  3344667889999999999999988642  2334434444 333333211     123


Q ss_pred             eeeCCCCcccccchHHHHHHHHHHHh
Q 047717          156 FELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       156 ~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      .+++++..++.    .++++++.|.+
T Consensus       148 ~ii~tsh~~~~----~~e~~~~~i~~  169 (189)
T 2bdt_A          148 YFYNTSHLQPT----NLNDIVKNLKT  169 (189)
T ss_dssp             SEEECSSSCGG----GHHHHHHHHHH
T ss_pred             EEEeCCCCChh----hHHHHHHHHhh
Confidence            45554433111    25777777773

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.00  E-value=2.7e-09  Score=91.35  Aligned_cols=112  Identities=13%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---------cCCCccccCC--CchhhHHHHHHHHHHHHHhc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---------FHLDRNQSYA--SMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---------~~~~~~~~y~--~~~~e~~~r~~l~~~v~~~L   71 (303)
                      .|+|+|+|||||||+|+.|++.++..     ++..++..         .+..-...+.  ...........+...+... 
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~-   75 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIP-----QISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQE-   75 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSG-
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc-
Confidence            48999999999999999999998643     34332210         0000000000  0000112222222222111 


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      ..+..||+|+......   +...+......+..+||+++|.+++.+|+..|.
T Consensus        76 ~~~~~~i~dg~~~~~~---~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~  124 (214)
T 1e4v_A           76 DCRNGFLLDGFPRTIP---QADAMKEAGINVDYVLEFDVPDELIVDRIVGRR  124 (214)
T ss_dssp             GGGGCEEEESCCCSHH---HHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred             ccCCCEEEeCCCCCHH---HHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence            1235789999543322   222222222245689999999999999998875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.98  E-value=8.1e-11  Score=96.62  Aligned_cols=107  Identities=22%  Similarity=0.232  Sum_probs=60.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCCCccccCCCchhhHHHHHHHHHHHHHhcC-CCCEEE
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHLDRNQSYASMPAEKNLRGVLRSEVDRSVS-KDNIII   78 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~-~~~~VI   78 (303)
                      .|+|+|+|||||||+|+.|++.++..     ++..|+..   .+..-...+.. ..+..++ .+...+...+. .+.+||
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~g~~~~~~~~~-~~~~~~~-~~~~~~l~~l~~~~~~Vi   74 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKREGLSIPQIFEK-KGEAYFR-KLEFEVLKDLSEKENVVI   74 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCHHHHHHH-SCHHHHH-HHHHHHHHHHTTSSSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHcCCCHHHHHHH-hChHHHH-HHHHHHHHHHhccCCeEE
Confidence            69999999999999999999998753     33322210   01000001100 0112222 12122223343 566777


Q ss_pred             EcCC--CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           79 VDSL--NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        79 vD~~--n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      .|+.  .....+++.+    +.   ...+||+++|.+++.+|+.+|.
T Consensus        75 ~~g~~~~~~~~~~~~l----~~---~~~~i~l~~~~e~~~~R~~~r~  114 (168)
T 2pt5_A           75 STGGGLGANEEALNFM----KS---RGTTVFIDIPFEVFLERCKDSK  114 (168)
T ss_dssp             ECCHHHHTCHHHHHHH----HT---TSEEEEEECCHHHHHHHCBCTT
T ss_pred             ECCCCEeCCHHHHHHH----Hc---CCEEEEEECCHHHHHHHHhCCC
Confidence            7542  2233333332    22   3479999999999999998864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.96  E-value=4.1e-09  Score=92.68  Aligned_cols=115  Identities=18%  Similarity=0.243  Sum_probs=66.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccC---CccEEEecCCccCC--Cc---------cccCCCchh--hHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEA---KETVRIIDEASFHL--DR---------NQSYASMPA--EKNLRGVLR   64 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~---~~~v~~~~~~~~~~--~~---------~~~y~~~~~--e~~~r~~l~   64 (303)
                      |.+|.|+|+|||||||+|+.|++.++..++   +..+.+++.+.+..  ..         ...|.+...  ...+...+.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~L~  101 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLK  101 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHHHH
Confidence            468999999999999999999999886421   22344444333221  00         012222111  112222333


Q ss_pred             HHHHH--------------------hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           65 SEVDR--------------------SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        65 ~~v~~--------------------~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      .....                    ......+||+||.....  ...+.   +..+   .+||+++|.+++.+|...|.
T Consensus       102 ~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~--~~~~~---~~~d---~vi~l~~~~e~~~~R~~~R~  172 (252)
T 1uj2_A          102 EITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFY--SQEVR---DLFQ---MKLFVDTDADTRLSRRVLRD  172 (252)
T ss_dssp             HHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTS--SHHHH---HHCS---EEEEEECCHHHHHHHHHHHH
T ss_pred             HHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeecccc--CHHHH---HhcC---eeEEEeCCHHHHHHHHHHHH
Confidence            22210                    01245789999966431  11222   2222   59999999999999998885

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.96  E-value=2.3e-09  Score=91.19  Aligned_cols=110  Identities=18%  Similarity=0.267  Sum_probs=60.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHH-ccccCCccEEEecCCc-----cCCCccccCCC-c----hhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEAL-KESEAKETVRIIDEAS-----FHLDRNQSYAS-M----PAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l-~~~~~~~~v~~~~~~~-----~~~~~~~~y~~-~----~~e~~~r~~l~~~v~~   69 (303)
                      |.+|+|+|.|||||||+++.|++.+ +..     ++..|+.-     ..... ..+.. .    .....+...+......
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~-----~i~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~l~~   94 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHLPNCS-----VISQDDFFKPESEIETDK-NGFLQYDVLEALNMEKMMSAISCWMES   94 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSTTEE-----EEEGGGGBCCGGGSCBCT-TSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcE-----EEeCCccccCHhHhhccc-cCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence            4589999999999999999999876 322     22222110     10000 11111 0    0111222122221211


Q ss_pred             h-----------cCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           70 S-----------VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        70 ~-----------L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .           .....+||+||..... ++ .+      ......+||+++|.+++.+|..+|+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~-~~-~~------~~~~d~~i~l~~~~~~~~~R~~~R~~  152 (207)
T 2qt1_A           95 ARHSVVSTDQESAEEIPILIIEGFLLFN-YK-PL------DTIWNRSYFLTIPYEECKRRRSTRVY  152 (207)
T ss_dssp             HTTSSCCC-----CCCCEEEEECTTCTT-CG-GG------TTTCSEEEEEECCHHHHHHHHHHSCC
T ss_pred             CCCCCcCCCeeecCCCCEEEEeehHHcC-cH-HH------HHhcCeeEEEECCHHHHHHHHHHcCC
Confidence            1           1235789999965332 11 01      12345799999999999999988853

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.95  E-value=1.8e-10  Score=94.72  Aligned_cols=107  Identities=21%  Similarity=0.138  Sum_probs=57.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCE-
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNI-   76 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~-   76 (303)
                      |..|+|+|.|||||||+|+.|++.++..     ++..|+..   .+......+.. ..+..++......+...+..+.. 
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~   80 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMIISERVGLSVREIFEE-LGEDNFRMFEKNLIDELKTLKTPH   80 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCHHHHHHH-TCHHHHHHHHHHHHHHHHTCSSCC
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHhCCCHHHHHHH-hCHHHHHHHHHHHHHHHHhcCCCE
Confidence            6789999999999999999999999754     33332210   11100011100 01122221112223333344555 


Q ss_pred             EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717           77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R  122 (303)
                      ||..+..+.-. +.        ......+|||++|++++.+|+.+|
T Consensus        81 Vi~~g~g~~~~-~~--------l~~~~~vi~l~~~~e~~~~Rl~~r  117 (168)
T 1zuh_A           81 VISTGGGIVMH-EN--------LKGLGTTFYLKMDFETLIKRLNQK  117 (168)
T ss_dssp             EEECCGGGGGC-GG--------GTTSEEEEEEECCHHHHHHHHCC-
T ss_pred             EEECCCCEech-hH--------HhcCCEEEEEECCHHHHHHHHhcc
Confidence            55543221111 11        123467999999999999999877

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.94  E-value=8.4e-10  Score=96.27  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=24.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +|+|.|+|||||||+|+.|++.++..
T Consensus        11 ~i~i~G~~GsGKsTla~~la~~lg~~   36 (233)
T 3r20_A           11 VVAVDGPAGTGKSSVSRGLARALGAR   36 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            89999999999999999999998754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.92  E-value=3.8e-08  Score=81.37  Aligned_cols=131  Identities=21%  Similarity=0.252  Sum_probs=86.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      .++.|+|++||||||+++.+.   .    +..++..+... +......+........+. .+.......+..+..+++|.
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~---~----~~~~~~~d~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~   80 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHF---K----PTEVISSDFCR-GLMSDDENDQTVTGAAFD-VLHYIVSKRLQLGKLTVVDA   80 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHS---C----GGGEEEHHHHH-HHHCSSTTCGGGHHHHHH-HHHHHHHHHHHTTCCEEEES
T ss_pred             EEEEEECCCCCCHHHHHHHHc---c----CCeEEccHHHH-HHhcCcccchhhHHHHHH-HHHHHHHHHHhCCCeEEEEC
Confidence            379999999999999999742   1    11222211100 000000111111111111 23333444556678899999


Q ss_pred             CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717           82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus        82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      ++...+.+.+...+|++......++++|-|...+-.++.+|..   ..++++++..+...+..
T Consensus        81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~---~~~~~~vi~~~~~~l~~  140 (171)
T 4gp7_A           81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD---RQVEEYVIRKHTQQMKK  140 (171)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS---CCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC---CCCCHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999998865   36788888776665443

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.91  E-value=4.6e-10  Score=95.63  Aligned_cols=167  Identities=13%  Similarity=0.148  Sum_probs=89.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc-c---------ccCC---CchhhHHHHHH----HHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR-N---------QSYA---SMPAEKNLRGV----LRS   65 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~-~---------~~y~---~~~~e~~~r~~----l~~   65 (303)
                      +|+|+|++||||||+++.|++.++..+  ..+..+.+..++... .         ..+.   +...+..+...    ...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g--~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAG--RSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVH   79 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEE--EEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHH
Confidence            799999999999999999999997542  233333222111000 0         0000   11111111100    012


Q ss_pred             HHHHhcCCCCEEEEcCCCCchHHHHH-----------HHHHHHH-----cC--CcEEEEEEecCHHHHHHHHHHhhhc--
Q 047717           66 EVDRSVSKDNIIIVDSLNSIKGYRYE-----------LWCLARA-----AG--IRYCVLYCDLEEDHCRKWNKERHEK--  125 (303)
Q Consensus        66 ~v~~~L~~~~~VIvD~~n~~k~~R~~-----------l~~~ak~-----~~--~~~~vI~l~~~~e~~~~R~~~R~~~--  125 (303)
                      .+...+..+.+||+|+..+.. +-|+           +...+..     .+  .+..+||+++|++++.+|+.+|...  
T Consensus        80 ~i~~~l~~g~~vi~D~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~  158 (214)
T 1gtv_A           80 TIQGLCRGYDVVILDRYVASN-AAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDP  158 (214)
T ss_dssp             HHHHEEEEEEEEEEEEEEHHH-HHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBB
T ss_pred             HHHHHhhCCCEEEECCCcccc-hhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccccccc
Confidence            345567788999999964321 1111           1112222     12  5778999999999999999998652  


Q ss_pred             --CCCCC--CHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          126 --GEAAY--DDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       126 --~~~~~--~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                        ..+.+  ..+.+..+...|+...... +..+.++|+.+ .       .++++.+.|..
T Consensus       159 ~~~~d~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~vId~~-~-------~~~~v~~~i~~  209 (214)
T 1gtv_A          159 GRARDNYERDAELQQRTGAVYAELAAQG-WGGRWLVVGAD-V-------DPGRLAATLAP  209 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHHHHHEE-EEEEEEEEEEE-E-------BHHHHHHHHC-
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHhC-CCCCEEEEeCC-C-------CHHHHHHHhcC
Confidence              00112  2466666666665421100 01245666642 1       24677666653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.90  E-value=1.9e-09  Score=95.03  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=24.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+|.|+|++||||||+++.|++.|+..
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~   54 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNWR   54 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            589999999999999999999988754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.87  E-value=3.4e-09  Score=94.98  Aligned_cols=41  Identities=12%  Similarity=0.105  Sum_probs=29.4

Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      ..+||+|+......   .+.   .   ....+|||+||.+++.+|..+|.
T Consensus       181 ~~~vIveg~~l~~~---~~~---~---~~d~vI~l~a~~ev~~~Rl~~R~  221 (281)
T 2f6r_A          181 KTLCVIDAAMLLEA---GWQ---S---MVHEVWTVVIPETEAVRRIVERD  221 (281)
T ss_dssp             CCEEEEECTTTTTT---TGG---G---GCSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCEEEEEechhhcc---chH---H---hCCEEEEEcCCHHHHHHHHHHcC
Confidence            46899999764422   110   1   13469999999999999999885

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.87  E-value=2.4e-08  Score=84.84  Aligned_cols=116  Identities=18%  Similarity=0.273  Sum_probs=62.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc-ccCCc---------------cEEEecCCccCCC-ccccCCCch-hhHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE-SEAKE---------------TVRIIDEASFHLD-RNQSYASMP-AEKNLRGVL   63 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~-~~~~~---------------~v~~~~~~~~~~~-~~~~y~~~~-~e~~~r~~l   63 (303)
                      .+|+|+|+|||||||+++.|++.++. .....               +...++.+.+... ....|.... ......+..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTL   92 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeecCC
Confidence            47999999999999999999998742 11110               1111111100000 000000000 000000001


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCC--cEEEEEEe-cCHHHHHHHHHHhhh
Q 047717           64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGI--RYCVLYCD-LEEDHCRKWNKERHE  124 (303)
Q Consensus        64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~--~~~vI~l~-~~~e~~~~R~~~R~~  124 (303)
                      ...+...++.|..||+|..  ..+.+    .+ +....  ...+||++ +|.+++.+|+.+|+.
T Consensus        93 ~~~i~~~l~~g~~vi~d~~--~~~~~----~l-~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~  149 (204)
T 2qor_A           93 KSEYDLAVGEGKICLFEMN--INGVK----QL-KESKHIQDGIYIFVKPPSIDILLGRLKNRNT  149 (204)
T ss_dssp             HHHHHHHHHTTCEEEEECC--HHHHH----HH-HHCSSCSCCEEEEEECSCHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHcCCeEEEEEC--HHHHH----HH-HHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC
Confidence            1234556678999999973  23332    12 22222  45789998 999999999998864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.85  E-value=7.9e-10  Score=91.08  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=53.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-----CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-----HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNI   76 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-----~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~   76 (303)
                      .+|+|+|+|||||||+++.|+..++..       +++.+.+     +..-...|. ...+..++..-...+........+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~~~-------~id~d~~~~~~~~~~i~~i~~-~~g~~~~~~~~~~~l~~l~~~~~~   76 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLNME-------FYDSDQEIEKRTGADVGWVFD-LEGEEGFRDREEKVINELTEKQGI   76 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCE-------EEEHHHHHHHHHTSCHHHHHH-HHHHHHHHHHHHHHHHHHHTSSSE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC-------EEeccHHHHHHhCcCHHHHHH-HHhHHHHHHHHHHHHHHHHhCCCe
Confidence            479999999999999999999988642       2221111     000000010 001111221111222233334445


Q ss_pred             EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ++..+....  .......+.+..+   .++|+++|++++.+|..+|..
T Consensus        77 v~~~~~~~~--~~~~~~~~l~~~~---~~i~l~~~~~~l~~R~~~r~~  119 (173)
T 1kag_A           77 VLATGGGSV--KSRETRNRLSARG---VVVYLETTIEKQLARTQRDKK  119 (173)
T ss_dssp             EEECCTTGG--GSHHHHHHHHHHS---EEEECCCCHHHHHSCC-----
T ss_pred             EEECCCeEE--ecHHHHHHHHhCC---EEEEEeCCHHHHHHHHhCCCC
Confidence            554321111  1112222334444   389999999999999988753

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.84  E-value=4.4e-09  Score=90.69  Aligned_cols=148  Identities=17%  Similarity=0.144  Sum_probs=80.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----ccccCC------CchhhHH----HHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----RNQSYA------SMPAEKN----LRGVLRSEV   67 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~~~~y~------~~~~e~~----~r~~l~~~v   67 (303)
                      .+|+|.|++||||||+++.|++.+..     .+..+.+...+..    -...+.      +...+..    -|..+...+
T Consensus         6 ~~i~~eG~~g~GKst~~~~l~~~l~~-----~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I   80 (216)
T 3tmk_A            6 KLILIEGLDRTGKTTQCNILYKKLQP-----NCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKI   80 (216)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHCS-----SEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc-----cceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999975     1333332211100    000111      1111110    111122345


Q ss_pred             HHhcCCCCEEEEcCCCCchHHHHH------------HHHHHHHcCCcEEEEEE-ecCHHHHHHHHHHhhhcCCCCCC-HH
Q 047717           68 DRSVSKDNIIIVDSLNSIKGYRYE------------LWCLARAAGIRYCVLYC-DLEEDHCRKWNKERHEKGEAAYD-DK  133 (303)
Q Consensus        68 ~~~L~~~~~VIvD~~n~~k~~R~~------------l~~~ak~~~~~~~vI~l-~~~~e~~~~R~~~R~~~~~~~~~-~e  133 (303)
                      ..+|..|.+||+|-..+ ...-|+            +..++...-.|..+||+ ++|++++.+|...|..    ++. .+
T Consensus        81 ~paL~~g~~VI~DRy~~-S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~d----r~E~~~  155 (216)
T 3tmk_A           81 KKDLLEGKNIVMDRYVY-SGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE----RYETVK  155 (216)
T ss_dssp             HHHHHTTCEEEEESCHH-HHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCC----TTCCHH
T ss_pred             HHHHHcCCEEEEeccHh-HHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcc----cccHHH
Confidence            56678999999997321 112111            11122222358899999 9999999998764432    332 45


Q ss_pred             HHHHHHHHhcCCCCC--CCCCCceeeeC
Q 047717          134 IFEDLVRRFEKPDRR--NRWDSPLFELC  159 (303)
Q Consensus       134 ~~~~l~~r~E~P~~~--~rwd~pl~~i~  159 (303)
                      .++++...|+.--..  .....+..+|+
T Consensus       156 f~~rvr~~Y~~la~~~~~~~~~~~~vID  183 (216)
T 3tmk_A          156 FQEKVKQTFMKLLDKEIRKGDESITIVD  183 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence            666666555541100  00123578888

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.80  E-value=7e-09  Score=86.75  Aligned_cols=103  Identities=16%  Similarity=0.108  Sum_probs=56.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH-HccccCCccEEEecCCc--cCCCc--cccCCCc-h---hhHHHHHHHHHHHHHhcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA-LKESEAKETVRIIDEAS--FHLDR--NQSYASM-P---AEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~-l~~~~~~~~v~~~~~~~--~~~~~--~~~y~~~-~---~e~~~r~~l~~~v~~~L~   72 (303)
                      ++|+|+|+|||||||+++.|++. ++..     ++..|+..  .....  ...+... .   .+......    +...+.
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~-----~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----l~~~~~   81 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAELDGFQ-----HLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDF----MEPIMV   81 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTEE-----EEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHH----HHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCE-----EeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHH----HHHHHh
Confidence            57999999999999999999998 5543     22222110  00000  0011110 0   12221212    233342


Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      .+..+|+|..+. ..++        .. ....+||++||.+++.+|+.+|+
T Consensus        82 ~~g~~vi~~~~~-~~~~--------~~-~~~~vi~l~~~~e~~~~Rl~~R~  122 (184)
T 1y63_A           82 SRGNHVVDYHSS-ELFP--------ER-WFHMVVVLHTSTEVLFERLTKRQ  122 (184)
T ss_dssp             SSSEEEEECSCC-TTSC--------GG-GCSEEEEEECCHHHHHHHHHHTT
T ss_pred             ccCCEEEeCchH-hhhh--------hc-cCCEEEEEECCHHHHHHHHHhCC
Confidence            234566776432 1111        11 12369999999999999999885

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.79  E-value=3e-09  Score=93.81  Aligned_cols=112  Identities=11%  Similarity=0.084  Sum_probs=59.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCccccCCCchhhHHHHHHHHHHHHHhcCC-CCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRNQSYASMPAEKNLRGVLRSEVDRSVSK-DNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~-~~~VIv   79 (303)
                      ..|+|+|+|||||||+++.|++.++..+++.+.....  .. +..-...|. ...+..+|..-...+...+.. ...||.
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~--~~~g~~i~~i~~-~~ge~~fr~~e~~~l~~l~~~~~~~Via  125 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQ--AMKGTSVAEIFE-HFGESVFREKETEALKKLSLMYHQVVVS  125 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHH--HSTTSCHHHHHH-HHCHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHH--HhcCccHHHHHH-HhCcHHHHHHHHHHHHHHHhhcCCcEEe
Confidence            4699999999999999999999987532111100000  00 110001111 112334442222233344444 567777


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717           80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R  122 (303)
                      +|.....  +.+-+...+ .   ..+||+++|.+++.+|+.+|
T Consensus       126 ~GgG~v~--~~~~~~~l~-~---~~vV~L~a~~e~l~~Rl~~~  162 (250)
T 3nwj_A          126 TGGGAVI--RPINWKYMH-K---GISIWLDVPLEALAHRIAAV  162 (250)
T ss_dssp             CCGGGGG--SHHHHHHHT-T---SEEEEEECCHHHHHHHHHC-
T ss_pred             cCCCeec--CHHHHHHHh-C---CcEEEEECCHHHHHHHHhhc
Confidence            7632111  111222222 1   46999999999999999753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.78  E-value=1.2e-08  Score=88.62  Aligned_cols=118  Identities=12%  Similarity=0.124  Sum_probs=64.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC---C-ccCCCccccCCCc--hhhHHHHHHHHHHHHHhcCCCCE
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE---A-SFHLDRNQSYASM--PAEKNLRGVLRSEVDRSVSKDNI   76 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~---~-~~~~~~~~~y~~~--~~e~~~r~~l~~~v~~~L~~~~~   76 (303)
                      -+.|.|+|||||||+|+.|++.++..+++..-++...   . .++..-...+...  .........+...+.+. .....
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~-~~~~g   88 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEA-DCANG   88 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSG-GGTTC
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCc-ccCCC
Confidence            3678999999999999999999976432221111000   0 0000000000000  00112222333333221 12357


Q ss_pred             EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +|+||.......   ...+.+....+..+|++++|.+++.+|+..|..
T Consensus        89 ~ILDGfPRt~~Q---a~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~  133 (230)
T 3gmt_A           89 YLFDGFPRTIAQ---ADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT  133 (230)
T ss_dssp             EEEESCCCSHHH---HHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred             eEecCCCCcHHH---HHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence            899996655433   222323233467899999999999999999964

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.78  E-value=1.6e-08  Score=86.16  Aligned_cols=30  Identities=30%  Similarity=0.219  Sum_probs=26.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAK   31 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~   31 (303)
                      ++|+|.|++||||||+++.|++.|+..+++
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            589999999999999999999999876433

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.78  E-value=1.3e-08  Score=86.02  Aligned_cols=28  Identities=39%  Similarity=0.459  Sum_probs=25.1

Q ss_pred             CE-EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MA-LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~-LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+ +|+|+|.|||||||+|+.|++.++..
T Consensus         1 m~~~i~i~G~~GsGKst~~~~la~~lg~~   29 (208)
T 3ake_A            1 MRGIVTIDGPSASGKSSVARRVAAALGVP   29 (208)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence            53 89999999999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.77  E-value=1.1e-08  Score=87.89  Aligned_cols=27  Identities=33%  Similarity=0.448  Sum_probs=24.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+|+|+|+|||||||+++.|++.++..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~   32 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQWH   32 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            479999999999999999999988643

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.75  E-value=3.1e-09  Score=90.04  Aligned_cols=26  Identities=35%  Similarity=0.387  Sum_probs=24.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |.+|+|+|++||||||+++.|++ ++.
T Consensus         1 m~~i~i~G~~GsGKSTl~~~L~~-~g~   26 (204)
T 2if2_A            1 MKRIGLTGNIGCGKSTVAQMFRE-LGA   26 (204)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred             CeEEEEECCCCcCHHHHHHHHHH-CCC
Confidence            78999999999999999999998 754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.74  E-value=7.1e-09  Score=87.98  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |.+|.|+|+|||||||+++.|++ ++.
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~   27 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGV   27 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCC
Confidence            35899999999999999999987 553

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.73  E-value=3e-08  Score=85.92  Aligned_cols=29  Identities=28%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEA   30 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~   30 (303)
                      ++|+|+|.+||||||+|+.|++.++...+
T Consensus        15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~   43 (223)
T 3hdt_A           15 LIITIEREYGSGGRIVGKKLAEELGIHFY   43 (223)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence            58999999999999999999999987543

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.72  E-value=3.1e-08  Score=90.66  Aligned_cols=139  Identities=15%  Similarity=0.092  Sum_probs=81.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc---CCCc----cccCCCc---------h--hhHH-HH-H
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF---HLDR----NQSYASM---------P--AEKN-LR-G   61 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~---~~~~----~~~y~~~---------~--~e~~-~r-~   61 (303)
                      ..|+|.|+-||||||+++.|+++++..   ..++...+..-   ....    ...|.+.         .  .+.. .. .
T Consensus         8 ~fI~~EG~dGaGKTT~~~~La~~L~~~---~~v~~trEPg~~w~~~~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~~lQ   84 (334)
T 1p6x_A            8 VRIYLDGVYGIGKSTTGRVMASAASGG---SPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHYQ   84 (334)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGCS---SCEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccC---CcEEEEeCCCCccccccchHHHHHHHHhhhhccccccCHHHHHHHHHHHH
Confidence            479999999999999999999999753   23555554431   0000    0112100         0  1100 00 0


Q ss_pred             HHH--------HHHH---------HhcCCCCEEEEcCCCC-----chHHH--------HHHHHHHHHc---CCcEEEEEE
Q 047717           62 VLR--------SEVD---------RSVSKDNIIIVDSLNS-----IKGYR--------YELWCLARAA---GIRYCVLYC  108 (303)
Q Consensus        62 ~l~--------~~v~---------~~L~~~~~VIvD~~n~-----~k~~R--------~~l~~~ak~~---~~~~~vI~l  108 (303)
                      .++        ..+.         .++..|.+||+|-..+     ....|        .++..+....   -.|..+||+
T Consensus        85 Llf~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~~l~~~~~~~~~PDLtIyL  164 (334)
T 1p6x_A           85 SRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVT  164 (334)
T ss_dssp             HHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCCCTTEEEEEE
T ss_pred             HHHHhHHHHHHHHHHHHHhhhccCccccCCCEEEEeCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHccCCCCCCEEEEE
Confidence            111        1121         2345678899996442     22222        1233332221   248999999


Q ss_pred             ecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717          109 DLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus       109 ~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      ++|++++.+|+.+|++.. +.++.+.++++.+.|+.
T Consensus       165 d~~pe~~l~RI~~RgR~~-Eri~~eyl~~vr~~Y~~  199 (334)
T 1p6x_A          165 TLNVEEHIRRLRTRARIG-EQIDITLIATLRNVYFM  199 (334)
T ss_dssp             ECCHHHHHHHHHHHSCTT-CCCCHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHhcCCCc-ccCCHHHHHHHHHHHHH
Confidence            999999999999887532 45777777777777664

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.70  E-value=2e-08  Score=86.14  Aligned_cols=113  Identities=18%  Similarity=0.071  Sum_probs=62.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE---ecCCccC------CCccccCCCc----------------hh
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRI---IDEASFH------LDRNQSYASM----------------PA   55 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~---~~~~~~~------~~~~~~y~~~----------------~~   55 (303)
                      |--|.|+|.+||||||+++.|++ ++...++.+.+.   .......      ......|...                ..
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~   87 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA   87 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence            66899999999999999999988 665422222110   0000000      0111233211                01


Q ss_pred             hHHHHHHHHHH----HHHhc--CCCCEEEEcCCCCch-HHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           56 EKNLRGVLRSE----VDRSV--SKDNIIIVDSLNSIK-GYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        56 e~~~r~~l~~~----v~~~L--~~~~~VIvD~~n~~k-~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      -+.+.+.+...    +.+.+  ..+..||+|....+. .--   .   +.   -..+|+++||+++..+|+.+|.
T Consensus        88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~---~---~~---~D~vi~V~ap~e~r~~Rl~~Rd  153 (210)
T 4i1u_A           88 RRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNW---K---AR---CDRVLVVDCPVDTQIARVMQRN  153 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHH---H---HH---CSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCc---c---cc---CCeEEEEECCHHHHHHHHHhcC
Confidence            11111112222    22222  245689999987665 211   1   11   2359999999999999999985

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.70  E-value=2.3e-08  Score=84.80  Aligned_cols=111  Identities=17%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC--ch---------hhHHHHHHHHHHHH--
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS--MP---------AEKNLRGVLRSEVD--   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~--~~---------~e~~~r~~l~~~v~--   68 (303)
                      .+|.|+|.+||||||+++.|+..+...  +..+.+.+.+.+.......+..  ..         +...++..++....  
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~  100 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQTLREQ--GISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKAS  100 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhc--CCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcC
Confidence            589999999999999999999988543  3345555433222211000100  00         01111111111100  


Q ss_pred             -------------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           69 -------------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        69 -------------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                                         ..+..+.+||+|+.......   +.   ..   -..+|||+||.+++.+|..+|.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~---~~---~d~~i~v~~~~~~~~~R~~~R~  165 (201)
T 1rz3_A          101 HQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---WR---PF---FDFVVYLDCPREIRFARENDQV  165 (201)
T ss_dssp             SEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---TG---GG---CSEEEEECCC------------
T ss_pred             CccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---HH---hh---cCEEEEEeCCHHHHHHHHhcCC
Confidence                               01235679999998654321   11   11   2369999999999999999885

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.66  E-value=4.4e-07  Score=76.39  Aligned_cols=114  Identities=12%  Similarity=0.117  Sum_probs=59.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHH------------------
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVL------------------   63 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l------------------   63 (303)
                      .+|+|+|++||||||+++.|+..+....+...... .....+......|..... ..+....                  
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKALAEIKISISHTT-RPKRPGDQEGVDYFFIDE-TRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEEC-SCCCTTCCBTTTBEECCH-HHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCCCeEEeceecc-CCCchhHhcCceEEeccH-HHHHHHHhcCcEEeeeeeecccccc
Confidence            38999999999999999999987632110000000 000000001111211100 1111111                  


Q ss_pred             -HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEec-CHHHHHHHHHHhhh
Q 047717           64 -RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDL-EEDHCRKWNKERHE  124 (303)
Q Consensus        64 -~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~-~~e~~~~R~~~R~~  124 (303)
                       ...+...+..+..+|+|..  ..+    +..+.+..... .+||+.+ +.+++.+|+.+|+.
T Consensus        86 ~~~~i~~~l~~g~~vi~d~~--~~~----~~~~~~~~~~~-~~v~~~~~~~e~l~~Rl~~R~~  141 (205)
T 3tr0_A           86 EKDWVLRQLKAGRDVLLEID--WQG----ARQIRELFPPA-LSIFILPPSIEALRERLIKRRQ  141 (205)
T ss_dssp             EHHHHHHHHHTTCEEEEECC--HHH----HHHHHHHCTTC-EEEEEECSCHHHHHHHHHTCTT
T ss_pred             hHHHHHHHHHcCCeEEEEEC--HHH----HHHHHHhCCCc-EEEEEECcCHHHHHHHHHHhCC
Confidence             1245566778889999972  222    22233333333 4555544 69999999999865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.65  E-value=6e-07  Score=74.76  Aligned_cols=159  Identities=14%  Similarity=0.175  Sum_probs=84.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CC--ccccCCCchhh--HHHHHHHHHHHHHhcCCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LD--RNQSYASMPAE--KNLRGVLRSEVDRSVSKDN   75 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~--~~~~y~~~~~e--~~~r~~l~~~v~~~L~~~~   75 (303)
                      .+|+|+|+|||||||+++.|+..++     ...+.++.+.+.  ..  ....|.....+  ..+.+.+..........+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~   84 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY   84 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCC
Confidence            3899999999999999999987632     233444433210  00  01123222111  1222222222222334566


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717           76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL  155 (303)
Q Consensus        76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl  155 (303)
                      .+++|+.... ..+..+    +..+.+...+++.++.+++.+|...|....  ..+++.+..+...++...   .+  ..
T Consensus        85 ~~~~~~~~~~-~~l~~~----~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~--lld~~~~~~~~~~~~~l~---~~--~~  152 (191)
T 1zp6_A           85 FVILDGVVRP-DWLPAF----TALARPLHYIVLRTTAAEAIERCLDRGGDS--LSDPLVVADLHSQFADLG---AF--EH  152 (191)
T ss_dssp             EEEECSCCCT-TTTHHH----HTTCSCEEEEEEECCHHHHHHHHHTTCTTS--CCCHHHHHHHHHHTTCCG---GG--GG
T ss_pred             eEEEeccCcH-HHHHHH----HhcCCCeEEEEecCCHHHHHHHHHhcCCCc--cCCHHHHHHHHHHHhccC---cc--cc
Confidence            7888985321 111111    122445678999999999999999885321  225677777777666421   12  23


Q ss_pred             eeeCCCCcccccchHHHHHHHHHHH
Q 047717          156 FELCPYKDAIENSSAAILDAVAYLT  180 (303)
Q Consensus       156 ~~i~~~~~~~~~~~~~~~ei~~~l~  180 (303)
                      +++++++..++   +.+++|++.|.
T Consensus       153 ~~i~t~~~~~~---~~~~~i~~~l~  174 (191)
T 1zp6_A          153 HVLPVSGKDTD---QALQSAINALQ  174 (191)
T ss_dssp             GEEECTTCCTT---TTTTTTHHHHH
T ss_pred             cEEECCCCCHH---HHHHHHHHHHH
Confidence            55655433322   23455555554

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.64  E-value=4.8e-08  Score=82.60  Aligned_cols=27  Identities=22%  Similarity=0.307  Sum_probs=24.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+|.|+|.+||||||+|+.|++.++..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~lg~~   39 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKYGAH   39 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence            479999999999999999999987653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.64  E-value=1.9e-07  Score=85.35  Aligned_cols=134  Identities=16%  Similarity=0.258  Sum_probs=77.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCC--------Cccc---------cC-CCchhhHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHL--------DRNQ---------SY-ASMPAEKNL   59 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~--------~~~~---------~y-~~~~~e~~~   59 (303)
                      ++|+|+|++||||||+|..|++.++..     ++..|...    +.+        ....         .+ ........+
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~e-----iIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F  115 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPLE-----VINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADF  115 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCEE-----EEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCCc-----EEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHH
Confidence            489999999999999999999998743     22222110    000        0000         01 112233455


Q ss_pred             HHHHHHHHHHhcCCCCEEEEcCCC--CchHHHHHH--------H------HHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           60 RGVLRSEVDRSVSKDNIIIVDSLN--SIKGYRYEL--------W------CLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        60 r~~l~~~v~~~L~~~~~VIvD~~n--~~k~~R~~l--------~------~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      +......+.....++.++|+-|..  |++...+.+        .      .+........++|+|.++.+++.+|+.+|.
T Consensus       116 ~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~  195 (339)
T 3a8t_A          116 RSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRV  195 (339)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhc
Confidence            545555666667788888887653  333221100        0      000013356789999999999999999986


Q ss_pred             hcCCCCCCHHHHHHHHHHhc
Q 047717          124 EKGEAAYDDKIFEDLVRRFE  143 (303)
Q Consensus       124 ~~~~~~~~~e~~~~l~~r~E  143 (303)
                      ..   .+....++++..-|+
T Consensus       196 ~~---Ml~~Gl~eEv~~L~~  212 (339)
T 3a8t_A          196 DD---MLELGMFDELAEFYS  212 (339)
T ss_dssp             HH---HHHHTHHHHHHHHCC
T ss_pred             cH---hhhccHHHHHHHHHH
Confidence            41   223344555555454

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.63  E-value=4.2e-08  Score=83.96  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=22.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+|+|+|.+||||||+++.|++ ++.
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~-lg~   29 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD-LGI   29 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCC
Confidence            4899999999999999999987 653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.61  E-value=1.6e-08  Score=87.70  Aligned_cols=62  Identities=11%  Similarity=0.021  Sum_probs=38.7

Q ss_pred             CCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCC--CCCCceeeeCCC
Q 047717          100 GIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRN--RWDSPLFELCPY  161 (303)
Q Consensus       100 ~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~--rwd~pl~~i~~~  161 (303)
                      ..+..+||+++|++++.+|+.+|++..+...+.+.+.++...|+.-....  ....+.++|+.+
T Consensus       145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~  208 (230)
T 2vp4_A          145 VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD  208 (230)
T ss_dssp             CCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence            35788999999999999999888643221123456666666665421000  123456888764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.61  E-value=1.8e-07  Score=78.85  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=21.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +|+|+|++||||||+++.|+..+
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            79999999999999999999876

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.55  E-value=1.9e-08  Score=84.65  Aligned_cols=24  Identities=38%  Similarity=0.326  Sum_probs=22.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      |.+|+|+|.|||||||+|+.|++.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            468999999999999999999987

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.54  E-value=4.3e-07  Score=82.65  Aligned_cols=27  Identities=33%  Similarity=0.456  Sum_probs=24.5

Q ss_pred             CE-EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MA-LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~-LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+ +|+|+|++||||||+|+.|++.++.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~   31 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPC   31 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            44 8999999999999999999999864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.50  E-value=3.1e-07  Score=78.23  Aligned_cols=114  Identities=11%  Similarity=0.071  Sum_probs=55.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc-ccCCccEEEecCCccCCCccccCCCchhhHHHHH-------------------
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE-SEAKETVRIIDEASFHLDRNQSYASMPAEKNLRG-------------------   61 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~-~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~-------------------   61 (303)
                      .+|+|+|++||||||+++.|+..+.. ....... .......+...+..|.... ...+..                   
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~-~tr~~~~~e~~g~~y~~~~-~~~f~~~~~~~~~le~~~~~~~~yg   86 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM-TTRLPREGEQDGVDYYFRS-REVFEQAIKDGKMLEYAEYVGNYYG   86 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE-ESSCCCTTCCBTTTBEECC-HHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec-ccccCcCcccCCceeEEec-HHHHHHHHhcCcEEEEEEEccccCC
Confidence            38999999999999999999988743 1100000 0000000000001111000 000110                   


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhhh
Q 047717           62 VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERHE  124 (303)
Q Consensus        62 ~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~~  124 (303)
                      .....+...+..|..||+|.  ...+.+    .+.+....+ .+||+.+| .+++.+|+.+|+.
T Consensus        87 ~~~~~i~~~l~~g~~vild~--~~~g~~----~~~~~~~~~-~~i~i~~ps~~~l~~Rl~~R~~  143 (208)
T 3tau_A           87 TPLEYVEEKLAAGVDIFLEI--EVQGAM----QVRKAMPEG-IFIFLTPPDLSELKNRIIGRGT  143 (208)
T ss_dssp             EEHHHHHHHHHTTCCEEEEC--CHHHHH----HHHHHCTTS-EEEEEECTTTTTSSCC------
T ss_pred             CcHHHHHHHHHcCCeEEEEe--eHHHHH----HHHHhCCCe-EEEEEeCCCHHHHHHHHHhcCC
Confidence            11123556677899999998  233322    223333333 45666554 8899999998864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.48  E-value=6.6e-07  Score=81.51  Aligned_cols=118  Identities=20%  Similarity=0.277  Sum_probs=64.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc----------cccCCCchhhHHHHHHHHHHHH-H--
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR----------NQSYASMPAEKNLRGVLRSEVD-R--   69 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~----------~~~y~~~~~e~~~r~~l~~~v~-~--   69 (303)
                      +|.|+|++||||||+++.|+..+....-+..+.+++.+++....          ...+........+...+..... +  
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~  173 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRN  173 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccc
Confidence            79999999999999999999988632112234444433332210          0011111111222222322111 0  


Q ss_pred             -------------------hcCCCCEEEEcCCCCchHHH-----HHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           70 -------------------SVSKDNIIIVDSLNSIKGYR-----YELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        70 -------------------~L~~~~~VIvD~~n~~k~~R-----~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                                         .+....+||+||.+.....+     ..+..+..   .-..+|||++|.+++++|..+|.
T Consensus       174 v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~---~~D~~I~Vda~~d~~~~R~i~Rd  248 (321)
T 3tqc_A          174 VRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSD---FFDFSLFVDAQAQVIQKWYIDRV  248 (321)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGG---GCSEEEEEECCHHHHHHHHHHHH
T ss_pred             cccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhh---hcCeEEEEECCHHHHHHHHHHhc
Confidence                               12345789999987543210     00000111   12359999999999999999986

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.47  E-value=4.5e-07  Score=76.22  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=60.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcccc-CCccEEEecCCccCCCccccCCCchhh---H---------------HHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESE-AKETVRIIDEASFHLDRNQSYASMPAE---K---------------NLRGVL   63 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~~~~~~~~~~~~~~~y~~~~~e---~---------------~~r~~l   63 (303)
                      +|+|+|++||||||+++.|.+.+.... +....... ...-+-..+..|..-..+   +               .+.+..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR-~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~   81 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTR-TPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECS-CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEecc-CCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence            589999999999999999988764311 01011000 000000001111100000   0               001122


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHH-cCCcEEEEEEe-cCHHHHHHHHHHhhh
Q 047717           64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARA-AGIRYCVLYCD-LEEDHCRKWNKERHE  124 (303)
Q Consensus        64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~-~~~~~~vI~l~-~~~e~~~~R~~~R~~  124 (303)
                      .+.+...+.+|..||+|..  ..|.+     ..+. .+....+||+. .+.+++.+|+.+|+.
T Consensus        82 ~~~v~~~l~~g~~vil~id--~~g~~-----~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~  137 (186)
T 1ex7_A           82 VASVKQVSKSGKTCILDID--MQGVK-----SVKAIPELNARFLFIAPPSVEDLKKRLEGRGT  137 (186)
T ss_dssp             HHHHHHHHHHTSEEEEECC--HHHHH-----HHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC
T ss_pred             cceeeehhhCCCEEEecCC--HHHHH-----HHHHhcccCceEEEEeCCCHHHHHHHHHhcCC
Confidence            3456677788999999973  33322     1233 23334556664 467889999999975

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.47  E-value=1.7e-06  Score=77.78  Aligned_cols=107  Identities=12%  Similarity=0.144  Sum_probs=72.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVD   80 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD   80 (303)
                      .+|+|-|.-||||||.++.|.+.|+..  +..|+.+...+-              ...+..+.......| ..|.+||+|
T Consensus        87 vlIvfEG~DgAGKgt~Ik~L~e~Ldpr--g~~V~~~~~Pt~--------------eE~~~~yl~R~~~~LP~~G~IvIfD  150 (304)
T 3czq_A           87 VMAVFEGRDAAGKGGAIHATTANMNPR--SARVVALTKPTE--------------TERGQWYFQRYVATFPTAGEFVLFD  150 (304)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTSCTT--TEEEEECCSCCH--------------HHHTSCTTHHHHTTCCCTTCEEEEE
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhccc--CCeEEEeCCcCh--------------HHHhchHHHHHHHhcccCCeEEEEE
Confidence            489999999999999999999999876  455666553321              000001111233456 789999999


Q ss_pred             CCCCchH-------------HHH---HHHH---HHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           81 SLNSIKG-------------YRY---ELWC---LARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        81 ~~n~~k~-------------~R~---~l~~---~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ...|..-             +..   ++..   .+...|++.+.+|+++|.++..+|+.+|..
T Consensus       151 RswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~  213 (304)
T 3czq_A          151 RSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRH  213 (304)
T ss_dssp             ECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhc
Confidence            8665321             111   1111   234468999999999999999999988864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.46  E-value=3.5e-07  Score=78.11  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=23.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +|+|+|+|||||||+++.|++.++..
T Consensus         5 ~i~i~G~~gsGkst~~~~l~~~~g~~   30 (219)
T 2h92_A            5 NIALDGPAAAGKSTIAKRVASELSMI   30 (219)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence            79999999999999999999988754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.43  E-value=6.5e-07  Score=77.65  Aligned_cols=27  Identities=37%  Similarity=0.377  Sum_probs=24.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+|+|+|.+||||||+++.|++.++..
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~~lg~~   43 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAKDFGFT   43 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence            479999999999999999999988743

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.39  E-value=1e-06  Score=80.53  Aligned_cols=138  Identities=12%  Similarity=0.106  Sum_probs=75.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc------C-CCccccCCCch---------hhHH---HHH-
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF------H-LDRNQSYASMP---------AEKN---LRG-   61 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~------~-~~~~~~y~~~~---------~e~~---~r~-   61 (303)
                      ..|+|.|+-||||||+++.|++++...  +  ++...+..-      + -.-...|.+..         .+..   ... 
T Consensus         5 ~fI~~EG~dGsGKTT~~~~La~~L~~~--g--v~~trEPg~~w~~~~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~~~q   80 (331)
T 1e2k_A            5 LRVYIDGPHGMGKTTTTQLLVALGSRD--D--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQ   80 (331)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC----C--C--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhhC--C--EEEEeCCCCcccccccHHHHHHHHhChhhhccccCCHHHHHHHHHHHH
Confidence            479999999999999999999998754  2  555554320      1 00011232110         0010   000 


Q ss_pred             HH--------HHHHHHh----------cCCCCEEEEcCCCC-----chHHH--------HHHHHHHHHc--C-CcEEEEE
Q 047717           62 VL--------RSEVDRS----------VSKDNIIIVDSLNS-----IKGYR--------YELWCLARAA--G-IRYCVLY  107 (303)
Q Consensus        62 ~l--------~~~v~~~----------L~~~~~VIvD~~n~-----~k~~R--------~~l~~~ak~~--~-~~~~vI~  107 (303)
                      .+        ...+...          +..|.+||+|-..+     +.+.+        .++..+....  + .+..+++
T Consensus        81 L~fa~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~~l~~~~~~~~ppdlt~l  160 (331)
T 1e2k_A           81 ITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL  160 (331)
T ss_dssp             HHHHHHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTCEEEE
T ss_pred             HHHHhhhHHHHHHHHHHHhHHhhccccccCCCEEEEecCchHhHHHHHHHHHhcCCCCHHHHHHHHHhcccCCCCeEEEE
Confidence            00        1112222          24688999996432     22222        1222222222  1 2467777


Q ss_pred             EecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717          108 CDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus       108 l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      ++.|++++.+|+.+|++.. +.++.+.++++.+.|+.
T Consensus       161 ldl~pe~~l~RI~~Rgr~~-Eri~~~yl~rvr~~Y~~  196 (331)
T 1e2k_A          161 GALPEDRHIDRLAKRQRPG-ERLDLAMLAAIRRVYGL  196 (331)
T ss_dssp             EECCHHHHHHHHHHSCCTT-CCCCHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHhcCCCc-ccCCHHHHHHHHHHHHH
Confidence            8889999999999886532 45777888877777764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.39  E-value=3e-07  Score=80.29  Aligned_cols=27  Identities=30%  Similarity=0.378  Sum_probs=24.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+|+|+|+|||||||+++.|++.++..
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~   54 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQ   54 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            489999999999999999999998753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.36  E-value=1.1e-06  Score=78.98  Aligned_cols=27  Identities=15%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      ++|.|+|++||||||+|+.|++.++..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~lg~~   32 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQIFRRE   32 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            489999999999999999999988743

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.35  E-value=1.9e-06  Score=79.79  Aligned_cols=138  Identities=13%  Similarity=0.119  Sum_probs=75.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc------cC-CCccccCCCc---------hhhHH----HHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS------FH-LDRNQSYASM---------PAEKN----LRG   61 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~------~~-~~~~~~y~~~---------~~e~~----~r~   61 (303)
                      .+|+|.|+-||||||+++.|+++|...  +  ++...+..      .+ -.-...|.+.         ..|..    .+.
T Consensus        50 ~fIt~EG~dGsGKTT~~~~Lae~L~~~--g--vv~trEPg~~w~~~~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~a~~Q  125 (376)
T 1of1_A           50 LRVYIDGPHGMGKTTTTQLLVALGSRD--D--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQ  125 (376)
T ss_dssp             EEEEECSSTTSSHHHHHHHHHC----C--C--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhC--C--EEEEeCCCCccccccchHHHHHHHhChhhhccccCCHHHHHHHHHHHH
Confidence            369999999999999999999998754  2  55555432      11 0001123211         00110    010


Q ss_pred             HH--------HHHHHHh----------cCCCCEEEEcCCCC-----chHHHH--------HHHHHHHHc--C-CcEEEEE
Q 047717           62 VL--------RSEVDRS----------VSKDNIIIVDSLNS-----IKGYRY--------ELWCLARAA--G-IRYCVLY  107 (303)
Q Consensus        62 ~l--------~~~v~~~----------L~~~~~VIvD~~n~-----~k~~R~--------~l~~~ak~~--~-~~~~vI~  107 (303)
                      .+        ...+.+.          +..|.+||+|-..+     +.+.+|        ++..+....  . .+..+++
T Consensus       126 L~fa~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~~~~i~~l~~~~~~~~ppdlt~L  205 (376)
T 1of1_A          126 ITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL  205 (376)
T ss_dssp             HHHHHHHHHHHHHHGGGEEEEC-----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTCEEEE
T ss_pred             HHHhccchHHHHHHHHHhhhhhcccccccCCCeEEEeeChhHHHHHHHHHHHhcCCCCHHHHHHHHHhcccCCCCeEEEE
Confidence            11        1112111          35688999996432     222221        222232222  1 2466777


Q ss_pred             EecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717          108 CDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus       108 l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      +++|++++.+|+.+|++.. +.++.+.++++.+.|+.
T Consensus       206 ldl~pe~~l~RI~~RgR~~-Eri~leyl~rVr~~Y~~  241 (376)
T 1of1_A          206 GALPEDRHIDRLAKRQRPG-ERLDLAMLAAIRRVYGL  241 (376)
T ss_dssp             EECCHHHHHHHHHHSCCTT-CCCCHHHHHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhcCCCc-ccCCHHHHHHHHHHHHH
Confidence            8999999999999886532 45777888888777764

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.29  E-value=2.5e-06  Score=78.17  Aligned_cols=139  Identities=16%  Similarity=0.108  Sum_probs=76.1

Q ss_pred             EEEEEEccCCCCHHHHH-HHHHHHHccccCCccEEEecCCcc---CCCc----cccCCCc-------hh-h--HHH-HHH
Q 047717            2 ALIVICGQPSSGKSLAA-TCLAEALKESEAKETVRIIDEASF---HLDR----NQSYASM-------PA-E--KNL-RGV   62 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA-~~La~~l~~~~~~~~v~~~~~~~~---~~~~----~~~y~~~-------~~-e--~~~-r~~   62 (303)
                      ..|+|.|.-||||||++ +.|+++++..+   .++...+..-   ....    ...|.+.       .. +  ..+ ...
T Consensus        13 ~~I~iEG~~GaGKTT~~~~~L~~~l~~~g---~vv~trEPgg~w~t~~g~e~lr~i~l~~~~~~~~~~s~~~a~~~~~e~   89 (341)
T 1osn_A           13 LRIYLDGAYGIGKTTAAEEFLHHFAITPN---RILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHF   89 (341)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGG---GEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHhhCC---cEEEEeCCCccccCcccHHHHHHHHhchhhhcccccchhhhhHHHHHH
Confidence            47999999999999999 99999987642   2555555421   0000    0112110       00 0  000 000


Q ss_pred             ----------HHHHHHH------------hcCCCCEEEEcCCCC-----chHHH--------HHHHHHHHHc---CCcEE
Q 047717           63 ----------LRSEVDR------------SVSKDNIIIVDSLNS-----IKGYR--------YELWCLARAA---GIRYC  104 (303)
Q Consensus        63 ----------l~~~v~~------------~L~~~~~VIvD~~n~-----~k~~R--------~~l~~~ak~~---~~~~~  104 (303)
                                +...+..            .+..|.+||+|-..+     ..+-|        .++..+....   -.+..
T Consensus        90 ql~fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~~~~~~~L~~~~~~~~~PDl  169 (341)
T 1osn_A           90 QSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTN  169 (341)
T ss_dssp             HHHTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHHHHHTTCCCCCSCCE
T ss_pred             HHHHHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEEeCCccHHHHHHHhhhhhcCCCCHHHHHHHHHhhhcCCCCCe
Confidence                      1122222            235678899996432     11111        1222222222   13678


Q ss_pred             EEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717          105 VLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus       105 vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      +||+++|++++.+|+.+|++.. ++++.+.++++.+.|+.
T Consensus       170 tI~Ld~~pe~~l~RI~~RgR~~-Erie~~yl~rvr~~Y~~  208 (341)
T 1osn_A          170 LVVCTVSLPSHLSRVSKRARPG-ETVNLPFVMVLRNVYIM  208 (341)
T ss_dssp             EEEEECCHHHHHHHCC-------CCCCHHHHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHhhCCCc-ccCCHHHHHHHHHHHHH
Confidence            9999999999999998886532 45777888777777664

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.24  E-value=1.9e-05  Score=67.89  Aligned_cols=114  Identities=10%  Similarity=0.060  Sum_probs=60.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc-ccCCccEEEecCC-ccCCCccccCCCchhhH--HHH----------------HH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE-SEAKETVRIIDEA-SFHLDRNQSYASMPAEK--NLR----------------GV   62 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~-~~~~~~v~~~~~~-~~~~~~~~~y~~~~~e~--~~r----------------~~   62 (303)
                      +++|+|++||||||+.+.|...+.. .. ...+.+.... .........|.....+.  ...                +.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~~p~~~-~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg~   96 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQPLYDT-QVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGT   96 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCTTTE-EECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCCce-EEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCCC
Confidence            8999999999999999999987652 00 0011111100 00000011111100000  000                00


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           63 LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        63 l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      -...+...+..|.++|+|   .-...+.+++....   ....++.+.-+.+.+.+|+..|+
T Consensus        97 ~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~Rl~~rG  151 (219)
T 1s96_A           97 SREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP---HARSIFILPPSKIELDRRLRGRG  151 (219)
T ss_dssp             EHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHHHHHTTS
T ss_pred             CHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHHHHHHcC
Confidence            012466678889999999   33444555554332   23445555567888999987775

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.22  E-value=3.5e-06  Score=71.43  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=61.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-------ccCCCc-----cccCCCchhhHHHHHHH---HH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-------SFHLDR-----NQSYASMPAEKNLRGVL---RS   65 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-------~~~~~~-----~~~y~~~~~e~~~r~~l---~~   65 (303)
                      |.+|+|+|.|||||+|+|+.|.+.++..  +..++.+++.       ..+...     ...|..... +.+..+.   ..
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R-~~m~~~g~~~R~   87 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFR-KDMIRWGEEKRQ   87 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHHHHHHHTTTCCCC-------CCSSHH-HHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHH-HHHHHHHHHHHh
Confidence            3699999999999999999999877532  2334444431       111110     112332211 1111011   00


Q ss_pred             H-----HHHhcC--CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH
Q 047717           66 E-----VDRSVS--KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK  120 (303)
Q Consensus        66 ~-----v~~~L~--~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~  120 (303)
                      .     +..++.  ...+||||+.-....    +.-+-+..+..+.+|.+.+++++..+|.-
T Consensus        88 ~d~~~~~~~~~~~~~~~~vII~dvR~~~E----v~~fr~~~g~~~~iirI~as~~~R~~Rg~  145 (202)
T 3ch4_B           88 ADPGFFCRKIVEGISQPIWLVSDTRRVSD----IQWFREAYGAVTQTVRVVALEQSRQQRGW  145 (202)
T ss_dssp             HCTTTTHHHHSBTCCCSEEEECCCCSHHH----HHHHHHHHGGGEEEEEEEECHHHHHHTTC
T ss_pred             cCchHHHHHHHHhcCCCcEEEeCCCCHHH----HHHHHHhCCCcEEEEEEECCHHHHHHHhh
Confidence            0     111111  235899999754332    22222334556889999999999999843

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.18  E-value=9.8e-06  Score=68.70  Aligned_cols=26  Identities=42%  Similarity=0.608  Sum_probs=23.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+|.|.|++||||||+++.|+..+..
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            37899999999999999999998864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.16  E-value=1.4e-05  Score=72.20  Aligned_cols=26  Identities=31%  Similarity=0.493  Sum_probs=24.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ++|+|+|++||||||+|..|++.++.
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~~   29 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLNG   29 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCcc
Confidence            58999999999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.08  E-value=4.9e-05  Score=69.52  Aligned_cols=25  Identities=36%  Similarity=0.494  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|+|+|++||||||+|+.|++.++.
T Consensus         9 lI~I~GptgSGKTtla~~La~~l~~   33 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKFNG   33 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred             eEEEECCCcCcHHHHHHHHHHHcCC
Confidence            8999999999999999999999863

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.08  E-value=5.2e-05  Score=68.41  Aligned_cols=26  Identities=31%  Similarity=0.350  Sum_probs=23.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ++|+|+|++||||||+|..|++.++.
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~~~   36 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKILPV   36 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred             cEEEEECCCccCHHHHHHHHHHhCCC
Confidence            48999999999999999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.08  E-value=6.9e-06  Score=74.23  Aligned_cols=25  Identities=36%  Similarity=0.446  Sum_probs=23.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      -+|.|+|++||||||+++.|+..+.
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4799999999999999999999876

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.05  E-value=2.9e-05  Score=71.37  Aligned_cols=26  Identities=35%  Similarity=0.595  Sum_probs=23.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +.|+|.|+|||||||+++.|+..++.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            56899999999999999999988764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.05  E-value=9e-06  Score=68.76  Aligned_cols=25  Identities=40%  Similarity=0.477  Sum_probs=23.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .+|.|+|++||||||+++.|+..++
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999999876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.01  E-value=3.8e-05  Score=66.77  Aligned_cols=27  Identities=33%  Similarity=0.409  Sum_probs=24.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+|.|+|++||||||+++.|+..++..
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            479999999999999999999988653

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.98  E-value=2e-05  Score=75.78  Aligned_cols=164  Identities=13%  Similarity=0.010  Sum_probs=89.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      .+|+|-|..||||+|..+.|.+.++..  +..|+.+...+..- ....|            +..-..+.-..|.+||+|.
T Consensus        44 vlIvfEG~D~AGKg~~Ik~l~~~l~pr--g~~V~a~~~Pt~~E-~~~~y------------l~R~~~~lP~~G~IvIfdR  108 (500)
T 3czp_A           44 VIILINGIEGAGKGETVKLLNEWMDPR--LIEVQSFLRPSDEE-LERPP------------QWRFWRRLPPKGRTGIFFG  108 (500)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHSCGG--GEEEEECSSCCHHH-HTSCT------------THHHHHHCCCTTCEEEEES
T ss_pred             EEEEEeCcCCCCHHHHHHHHHHhcCcc--CCeEEEeCCCChhh-ccCCh------------hhhHHHhCCCCCeEEEEeC
Confidence            489999999999999999999999876  34566554321100 01112            1112223335899999998


Q ss_pred             CCCchH----------------HHHHHHH---HHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCC-------CC-CHHH
Q 047717           82 LNSIKG----------------YRYELWC---LARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEA-------AY-DDKI  134 (303)
Q Consensus        82 ~n~~k~----------------~R~~l~~---~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~-------~~-~~e~  134 (303)
                      ..|..-                +-.++..   .....|++.+.+|+++|.++..+|+.+|..+...       .+ ..+.
T Consensus       109 SwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~  188 (500)
T 3czp_A          109 NWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWKQSEV  188 (500)
T ss_dssp             CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------------CSSCTTSHHH
T ss_pred             chhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHh
Confidence            754321                1112211   2456789999999999999999999998753211       11 1233


Q ss_pred             HHHHHHHhcCCCC-CCCCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          135 FEDLVRRFEKPDR-RNRWDSPLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       135 ~~~l~~r~E~P~~-~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      +++....|+.-.. .+.-.+|.++|+.++ .--.....++.|++.|..
T Consensus       189 ~~~Y~~a~e~~l~~T~t~~APW~vI~a~d-k~~arl~v~~~il~~l~~  235 (500)
T 3czp_A          189 YDRFVHYGERVLRRTSRDYAPWYVVEGAD-ERYRALTVGRILLEGLQA  235 (500)
T ss_dssp             HHHHHHHHHHHHHHHCBTTBCEEEEECSC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCCEEEEECCC-cchhHHHHHHHHHHHHHH
Confidence            4433332222111 112335888888753 211113344555555543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.97  E-value=1.1e-05  Score=66.96  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      +|+|+|++||||||+++.|...+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            799999999999999999998764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.92  E-value=3.4e-05  Score=66.32  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=15.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHH-HHH
Q 047717            2 ALIVICGQPSSGKSLAATCLA-EAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La-~~l   25 (303)
                      .+|.|+|++||||||+++.|+ ..+
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            379999999999999999999 765

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.91  E-value=3e-05  Score=74.75  Aligned_cols=26  Identities=12%  Similarity=0.121  Sum_probs=24.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ..|+|+|++||||||+|+.|++.|+.
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             eEEEecccCCCCHHHHHHHHHHHHHH
Confidence            57999999999999999999999985

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.88  E-value=3.3e-05  Score=69.98  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=23.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|.|.|++||||||+++.|+..+..
T Consensus        92 ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           92 IIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCchHHHHHHHHHhhccc
Confidence            7899999999999999999998864

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=97.88  E-value=0.00018  Score=63.92  Aligned_cols=138  Identities=12%  Similarity=0.129  Sum_probs=86.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      ||+|.|..||||++..+.|.+.++..  +..|+.+....-            .|+ .+..+-.-..+.=..|.++|+|..
T Consensus        77 lIvfEG~DaAGKgg~Ik~l~~~ldPR--g~~V~a~~~Pt~------------eE~-~~~ylwR~~~~lP~~G~I~IFdRS  141 (289)
T 3rhf_A           77 LLILQAMDTAGKGGIVSHVVGAMDPQ--GVQLTAFKAPTD------------EEK-SHDFLWRIEKQVPAAGMVGVFDRS  141 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSCGG--GEEEEECCSCCH------------HHH-TSCTTHHHHTTCCCTTCEEEEESC
T ss_pred             EEEEECCCCCChHHHHHHHHHhcCcC--ceEEEECCCCCh------------hhh-cCCHHHHHHHhCCCCCeEEEEeCc
Confidence            79999999999999999999999876  345555432110            011 000111122233368999999998


Q ss_pred             CCchHH---------------HH----HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCH---------
Q 047717           83 NSIKGY---------------RY----ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDD---------  132 (303)
Q Consensus        83 n~~k~~---------------R~----~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~---------  132 (303)
                      .|..-.               ++    .+.......|+..+.+|+++|.++..+|+.+|..+....  +++         
T Consensus       142 wY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~s~~D~~~r~~w  221 (289)
T 3rhf_A          142 QYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWKYSRGDLAERAYW  221 (289)
T ss_dssp             GGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGGCCHHHHHHHTTH
T ss_pred             hhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHHH
Confidence            764321               11    122223356888899999999999999999987643221  122         


Q ss_pred             ----HHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          133 ----KIFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       133 ----e~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                          +..++|..+-..+      .+|.++|..+
T Consensus       222 d~Y~~a~e~ml~~T~t~------~APW~VV~ad  248 (289)
T 3rhf_A          222 DDYMDAYSVAFEKTSTE------IAPWHVVPAN  248 (289)
T ss_dssp             HHHHHHHHHHHHHHCCS------SSCEEEEECS
T ss_pred             HHHHHHHHHHHHHhCCC------CCCeEEEeCC
Confidence                3344444443332      3588888875

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.86  E-value=4.2e-05  Score=73.52  Aligned_cols=109  Identities=17%  Similarity=0.131  Sum_probs=73.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      .+|+|-|.-||||+|..+.|.+.++..  +..|+.+...+..- ....|-            ..-..+.=..|.++|+|.
T Consensus       301 vlIvfEG~DaAGKg~~Ik~l~~~ldpr--g~~V~~~~~Pt~~E-~~~~yl------------~R~~~~lP~~G~i~IfDR  365 (500)
T 3czp_A          301 LVAVFEGNDAAGKGGAIRRVTDALDPR--QYHIVPIAAPTEEE-RAQPYL------------WRFWRHIPARRQFTIFDR  365 (500)
T ss_dssp             EEEEEEESTTSCHHHHHHHHHTTSCGG--GCEEEECCSCCHHH-HTSCTT------------HHHHTTCCCTTCEEEEES
T ss_pred             EEEEEeccCCCCHHHHHHHHHHhcCcc--CCeEEEeCCCChhh-hcchHH------------HHHHHhCCCCCeEEEEeC
Confidence            379999999999999999999999876  35566654321100 011121            112222335899999998


Q ss_pred             CCCchH-------------H--H-HHHHH---HHHHcCCcEEEEEEecCHHHHHHHHHHhhhc
Q 047717           82 LNSIKG-------------Y--R-YELWC---LARAAGIRYCVLYCDLEEDHCRKWNKERHEK  125 (303)
Q Consensus        82 ~n~~k~-------------~--R-~~l~~---~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~  125 (303)
                      ..|..-             +  + .++..   .....|++.+.+|+++|.++..+|+.+|..+
T Consensus       366 swY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~  428 (500)
T 3czp_A          366 SWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKT  428 (500)
T ss_dssp             CGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHS
T ss_pred             cchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcC
Confidence            776432             1  1 11111   1346689999999999999999999999764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.81  E-value=9.7e-05  Score=62.42  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      +|+|+|++||||||+++.|.+.+.
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCC
Confidence            799999999999999999998765

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.72  E-value=0.00011  Score=68.67  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=24.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ++|+|+|++||||||+|..|++.++.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~   28 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNG   28 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCC
Confidence            68999999999999999999999975

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.66  E-value=0.00016  Score=61.57  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=23.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      ..++|+|+||+||||+|+.+++.+...
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~~~~   79 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARANEL   79 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            358999999999999999999988754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.65  E-value=0.00035  Score=66.07  Aligned_cols=104  Identities=20%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC------------ccccCCC---chhhHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD------------RNQSYAS---MPAEKNLRGVLRSE   66 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~------------~~~~y~~---~~~e~~~r~~l~~~   66 (303)
                      .+|+++|+|||||||++..|+.++...  +..|.+++-+.+...            .-..|..   .....    .+...
T Consensus       101 ~vIlivG~~G~GKTTt~~kLA~~l~~~--G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~----i~~~a  174 (443)
T 3dm5_A          101 TILLMVGIQGSGKTTTVAKLARYFQKR--GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIK----LAKEG  174 (443)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHH----HHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHH----HHHHH
Confidence            489999999999999999999999765  566776664432110            0001211   11111    22223


Q ss_pred             HHHhcC-CCCEEEEcCCCCc---hHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717           67 VDRSVS-KDNIIIVDSLNSI---KGYRYELWCLARAAGIRYCVLYCDLE  111 (303)
Q Consensus        67 v~~~L~-~~~~VIvD~~n~~---k~~R~~l~~~ak~~~~~~~vI~l~~~  111 (303)
                      +..+.. .-++||+|.....   .....++..+.+.......++.+++.
T Consensus       175 l~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~  223 (443)
T 3dm5_A          175 VDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGT  223 (443)
T ss_dssp             HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred             HHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCC
Confidence            333322 3579999976532   23445555544444444445556654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00026  Score=66.10  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=23.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|+||+|||++|+++|..++..
T Consensus       185 vLL~GPPGTGKTllAkAiA~e~~~~  209 (405)
T 4b4t_J          185 VILYGPPGTGKTLLARAVAHHTDCK  209 (405)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred             eEEeCCCCCCHHHHHHHHHHhhCCC
Confidence            7899999999999999999998754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.62  E-value=4.6e-05  Score=62.83  Aligned_cols=29  Identities=21%  Similarity=0.184  Sum_probs=26.3

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      |++|.|+|++||||||++..|...|...+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g   32 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREG   32 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence            78999999999999999999999987653

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.59  E-value=0.00048  Score=57.38  Aligned_cols=96  Identities=14%  Similarity=0.179  Sum_probs=51.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHH-hc--CCCCEEEE
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDR-SV--SKDNIIIV   79 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~-~L--~~~~~VIv   79 (303)
                      .++|+|+||+||||+++.+++.+.........+.++...           ......++..+...... .+  ....++|+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~vlii  108 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-----------ERGIDVVRHKIKEFARTAPIGGAPFKIIFL  108 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC-----------TTCHHHHHHHHHHHHTSCCSTTCSCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc-----------ccChHHHHHHHHHHhcccCCCccCceEEEE
Confidence            489999999999999999999875432222333333110           00112222222222211 11  34568999


Q ss_pred             cCCCCch-HHHHHHHHHHHHcCCcEEEEEEe
Q 047717           80 DSLNSIK-GYRYELWCLARAAGIRYCVLYCD  109 (303)
Q Consensus        80 D~~n~~k-~~R~~l~~~ak~~~~~~~vI~l~  109 (303)
                      |...... .....+..+.........+|...
T Consensus       109 De~~~l~~~~~~~l~~~l~~~~~~~~~i~~~  139 (226)
T 2chg_A          109 DEADALTADAQAALRRTMEMYSKSCRFILSC  139 (226)
T ss_dssp             ETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred             eChhhcCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence            9876543 33444555544444444455443

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.57  E-value=0.00091  Score=59.51  Aligned_cols=97  Identities=15%  Similarity=0.217  Sum_probs=53.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccC--CccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEA--KETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~--~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      -|+|+|+||+|||++|+.+++.+.....  ...++.++...+.   . .|... .+...+..+.    ..  .+.++++|
T Consensus        69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~---~-~~~g~-~~~~~~~~~~----~~--~~~vl~iD  137 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV---G-QYIGH-TAPKTKEVLK----RA--MGGVLFID  137 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC---C-SSTTC-HHHHHHHHHH----HH--TTSEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh---h-hcccc-cHHHHHHHHH----hc--CCCEEEEE
Confidence            4899999999999999999999865422  2244554422221   1 12111 1222232222    22  46789999


Q ss_pred             CCCCc----------hHHHHHHHHHHHHcCCcEEEEEEec
Q 047717           81 SLNSI----------KGYRYELWCLARAAGIRYCVLYCDL  110 (303)
Q Consensus        81 ~~n~~----------k~~R~~l~~~ak~~~~~~~vI~l~~  110 (303)
                      .....          ......+............+|....
T Consensus       138 Eid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~  177 (309)
T 3syl_A          138 EAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY  177 (309)
T ss_dssp             TGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC
T ss_pred             ChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            76533          2333455555454444455554443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.54  E-value=0.00042  Score=65.44  Aligned_cols=107  Identities=22%  Similarity=0.195  Sum_probs=59.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC------------CccccCCCchhhHHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL------------DRNQSYASMPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~------------~~~~~y~~~~~e~~~r~~l~~~v~~   69 (303)
                      .+|+++|++||||||++..|+..+...  +..|.+++-+.+..            ..-..|........ .......+..
T Consensus        98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp-~~i~~~al~~  174 (433)
T 3kl4_A           98 FIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNP-IEIAKKGVDI  174 (433)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCH-HHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCH-HHHHHHHHHH
Confidence            479999999999999999999998765  45666655332110            00001111100001 1122223433


Q ss_pred             hc-CCCCEEEEcCCCC-----chHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717           70 SV-SKDNIIIVDSLNS-----IKGYRYELWCLARAAGIRYCVLYCDLE  111 (303)
Q Consensus        70 ~L-~~~~~VIvD~~n~-----~k~~R~~l~~~ak~~~~~~~vI~l~~~  111 (303)
                      +. ..-++||+|....     ......++..+.+.......++.+++.
T Consensus       175 a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~  222 (433)
T 3kl4_A          175 FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDAS  222 (433)
T ss_dssp             TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred             HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCc
Confidence            33 2458999997653     234566676665555544455556664

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.53  E-value=0.00043  Score=66.62  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=30.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      ..|+|+|.|||||||++..|+.++...  +..+.+++.+
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~--G~kVllVd~D  138 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLAYYYQRK--GWKTCLICAD  138 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEecc
Confidence            478999999999999999999988764  4566666643

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.46  E-value=0.00083  Score=53.85  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=26.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      .++|.|++||||||+++.++..+...  +..++.++
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~   71 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYID   71 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEc
Confidence            57899999999999999999987543  33455554

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.45  E-value=0.00012  Score=60.58  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=25.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |++|+|+|++||||||+++.|...+...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            6799999999999999999999887654

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.00056  Score=64.86  Aligned_cols=25  Identities=32%  Similarity=0.636  Sum_probs=23.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|+||+|||++|++||..++..
T Consensus       246 ILLyGPPGTGKTlLAkAiA~e~~~~  270 (467)
T 4b4t_H          246 ILLYGPPGTGKTLCARAVANRTDAT  270 (467)
T ss_dssp             EEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred             eEeeCCCCCcHHHHHHHHHhccCCC
Confidence            7999999999999999999998754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.00079  Score=63.46  Aligned_cols=25  Identities=24%  Similarity=0.612  Sum_probs=23.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|+||+|||++|+++|..++..
T Consensus       209 iLL~GPPGtGKT~lakAiA~~~~~~  233 (428)
T 4b4t_K          209 VLLYGPPGTGKTMLVKAVANSTKAA  233 (428)
T ss_dssp             EEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC
Confidence            8999999999999999999998754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.38  E-value=0.0014  Score=59.10  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=23.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -|+|.|+||+|||++|+.++..++..
T Consensus        53 ~vLl~GppGtGKT~la~aia~~~~~~   78 (322)
T 3eie_A           53 GILLYGPPGTGKSYLAKAVATEANST   78 (322)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHCCC
Confidence            48999999999999999999987643

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.00035  Score=66.07  Aligned_cols=25  Identities=28%  Similarity=0.635  Sum_probs=23.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|+||+|||++|++||..++..
T Consensus       218 vLL~GPPGtGKTllAkAiA~e~~~~  242 (437)
T 4b4t_L          218 VLLYGPPGTGKTLLAKAVAATIGAN  242 (437)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCC
Confidence            8999999999999999999998764

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.31  E-value=0.0018  Score=59.61  Aligned_cols=37  Identities=27%  Similarity=0.306  Sum_probs=28.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .++.|.|+|||||||++.+++..+...  +..+++++.+
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E   98 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAE   98 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecc
Confidence            378999999999999999999877543  3456666643

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.29  E-value=0.00082  Score=59.98  Aligned_cols=26  Identities=35%  Similarity=0.496  Sum_probs=23.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +-++|.|+||+||||+|+.+++.+..
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~l~~   72 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARELFG   72 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhcC
Confidence            45899999999999999999998754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.28  E-value=0.0016  Score=54.75  Aligned_cols=32  Identities=31%  Similarity=0.326  Sum_probs=25.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +++|.|+|||||||++..|+. .  .  +..+++++.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~-~--~--~~~v~~i~~   53 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL-L--S--GKKVAYVDT   53 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH-H--H--CSEEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHH-H--c--CCcEEEEEC
Confidence            789999999999999999987 1  1  345666653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.27  E-value=0.0024  Score=57.74  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=21.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      -|+|.|+||+|||++|+.++..+
T Consensus        47 ~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           47 GILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             EEEEESSSSSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCccHHHHHHHHHHHc
Confidence            48899999999999999999988

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.27  E-value=0.0035  Score=57.43  Aligned_cols=24  Identities=33%  Similarity=0.580  Sum_probs=22.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|.|+||+|||++|+.++..++.
T Consensus        87 iLL~GppGtGKT~la~ala~~~~~  110 (355)
T 2qp9_X           87 ILLYGPPGTGKSYLAKAVATEANS  110 (355)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCC
Confidence            789999999999999999998864

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.25  E-value=0.00017  Score=62.86  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=24.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |.+|.|+|.+||||||+|+.|++.++.
T Consensus         1 m~~i~ltG~~~sGK~tv~~~l~~~~g~   27 (241)
T 1dek_A            1 MKLIFLSGVKRSGKDTTADFIMSNYSA   27 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            889999999999999999999988664

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.23  E-value=0.0041  Score=55.65  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=29.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS   41 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~   41 (303)
                      +|+|+|++||||||++..|+..+... -+..|.+++.+.
T Consensus       107 vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~  144 (296)
T 2px0_A          107 YIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDT  144 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCc
Confidence            78999999999999999999988641 145677766543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.00058  Score=64.22  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=23.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|+||+|||++|+++|..++..
T Consensus       219 vLLyGPPGTGKTlLAkAiA~e~~~~  243 (437)
T 4b4t_I          219 VILYGAPGTGKTLLAKAVANQTSAT  243 (437)
T ss_dssp             EEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred             CceECCCCchHHHHHHHHHHHhCCC
Confidence            8999999999999999999998754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.21  E-value=0.0031  Score=56.48  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|+++|.+|+||||++..|+..+...  +..+.+++.+
T Consensus        99 ~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D  135 (297)
T 1j8m_F           99 YVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGAD  135 (297)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence            378899999999999999999988654  4567776644

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00045  Score=65.25  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=23.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      =|+|.|+||+|||++|+++|..++..
T Consensus       217 GvLLyGPPGTGKTllAkAiA~e~~~~  242 (434)
T 4b4t_M          217 GALMYGPPGTGKTLLARACAAQTNAT  242 (434)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             eeEEECcCCCCHHHHHHHHHHHhCCC
Confidence            38999999999999999999998754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.21  E-value=0.0028  Score=56.94  Aligned_cols=34  Identities=21%  Similarity=0.177  Sum_probs=26.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -++|.|+||+||||+|+.++..+...  +..++.++
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~   72 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSS   72 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEE
Confidence            47899999999999999999988543  23444443

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.21  E-value=0.0012  Score=52.28  Aligned_cols=24  Identities=38%  Similarity=0.498  Sum_probs=22.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      |+-|++.|.+|+||||+.+.|...
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            1 MHKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999998754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.16  E-value=0.0036  Score=56.99  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=22.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+++.+++.+..
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~~~~~   70 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLRRLEA   70 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999988743

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.16  E-value=0.00086  Score=59.74  Aligned_cols=110  Identities=16%  Similarity=0.215  Sum_probs=55.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHH--Hhc-C-CCCEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVD--RSV-S-KDNII   77 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~--~~L-~-~~~~V   77 (303)
                      |.++|.|+||+||||+|+.+++.+........++.++...           ......++..+.....  ..+ . +..+|
T Consensus        43 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~vi  111 (323)
T 1sxj_B           43 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD-----------DRGIDVVRNQIKHFAQKKLHLPPGKHKIV  111 (323)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS-----------CCSHHHHHTHHHHHHHBCCCCCTTCCEEE
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc-----------ccChHHHHHHHHHHHhccccCCCCCceEE
Confidence            3489999999999999999999875422122333333111           0011233322322221  122 2 25688


Q ss_pred             EEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717           78 IVDSLNSI-KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        78 IvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R  122 (303)
                      |+|..... ......+............+|.+..+.+.....+..|
T Consensus       112 iiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr  157 (323)
T 1sxj_B          112 ILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ  157 (323)
T ss_dssp             EEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred             EEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence            99976443 2233334444444444455555544444333334434

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.14  E-value=0.00078  Score=63.76  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=27.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -++|.|+||+||||+|+.++..+.....+..++.++
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~  167 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence            478999999999999999999885442234455444

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.10  E-value=0.00053  Score=69.53  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=23.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      =|+|.|+||+|||++|+.++..++..
T Consensus       240 GILL~GPPGTGKT~LAraiA~elg~~  265 (806)
T 3cf2_A          240 GILLYGPPGTGKTLIARAVANETGAF  265 (806)
T ss_dssp             EEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            38999999999999999999887653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.08  E-value=0.0033  Score=57.63  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=27.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      ++.|.|.|||||||+|.+++......  +..+.+++-
T Consensus        63 iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~   97 (349)
T 2zr9_A           63 VIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDA   97 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEC
Confidence            78999999999999999998766443  345666653

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.08  E-value=0.0014  Score=58.78  Aligned_cols=94  Identities=15%  Similarity=0.253  Sum_probs=51.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHH--hcCCCCEEEEc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDR--SVSKDNIIIVD   80 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~--~L~~~~~VIvD   80 (303)
                      ++++.|+||+||||+|+.+++.++.     +++.++...        +.    ...++..+......  ......++|+|
T Consensus        50 ~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~--------~~----~~~i~~~~~~~~~~~~~~~~~~vliiD  112 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSD--------CK----IDFVRGPLTNFASAASFDGRQKVIVID  112 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTT--------CC----HHHHHTHHHHHHHBCCCSSCEEEEEEE
T ss_pred             EEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccc--------cC----HHHHHHHHHHHHhhcccCCCCeEEEEE
Confidence            6788999999999999999998753     344444211        11    22333333322211  11245788899


Q ss_pred             CCCCch--HHHHHHHHHHHHcCCcEEEEEEecCHH
Q 047717           81 SLNSIK--GYRYELWCLARAAGIRYCVLYCDLEED  113 (303)
Q Consensus        81 ~~n~~k--~~R~~l~~~ak~~~~~~~vI~l~~~~e  113 (303)
                      ......  .....+............+|....+..
T Consensus       113 Ei~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~  147 (324)
T 3u61_B          113 EFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID  147 (324)
T ss_dssp             SCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred             CCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence            876653  344444444444333344554444433

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.07  E-value=0.0067  Score=56.10  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=22.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+|||++|+.++..++.
T Consensus       150 ~vLL~GppGtGKT~la~aia~~~~~  174 (389)
T 3vfd_A          150 GLLLFGPPGNGKTMLAKAVAAESNA  174 (389)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcC
Confidence            5899999999999999999998764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.07  E-value=0.00021  Score=58.90  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=28.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      |++|.|+|.+||||||+++.|...+...+.....+.++
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d   39 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH   39 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence            57999999999999999999999887542223344444

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.06  E-value=0.00031  Score=57.70  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .++|.|+|||||||+++.++..+.
T Consensus        40 ~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           40 GLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999998875

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.04  E-value=0.0014  Score=61.89  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=29.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +|+|+|.|||||||++..|+..+...  +..+.+++.+
T Consensus       101 vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~~D  136 (432)
T 2v3c_C          101 VILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIAAD  136 (432)
T ss_dssp             CEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEECCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecc
Confidence            68999999999999999999988654  4567776654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.03  E-value=0.002  Score=58.43  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+||||+++.++..+..
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3789999999999999999998754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.03  E-value=0.0016  Score=57.13  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=22.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|+|+||+|||++|+.+++.++.
T Consensus        66 ~vLl~G~~GtGKT~la~~ia~~~~~   90 (272)
T 1d2n_A           66 SVLLEGPPHSGKTALAAKIAEESNF   90 (272)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCC
Confidence            5899999999999999999998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.01  E-value=0.00042  Score=62.03  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=24.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+|.|+|.+||||||+++.|+..+..
T Consensus        32 ~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           32 LFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            47999999999999999999999875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.99  E-value=0.00042  Score=56.35  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+++.+++.+..
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999998854

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.94  E-value=0.00052  Score=56.82  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=22.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .+.|.|++||||||+.+.|+..+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999998886

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.93  E-value=0.00073  Score=56.37  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=23.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .-++|+|+||+||||+|+.|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            358899999999999999999988643

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.0099  Score=53.74  Aligned_cols=26  Identities=19%  Similarity=0.114  Sum_probs=23.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +.++|+|+||+|||++++.+++.+..
T Consensus        46 ~~lli~GpPGTGKT~~v~~v~~~L~~   71 (318)
T 3te6_A           46 KLFYITNADDSTKFQLVNDVMDELIT   71 (318)
T ss_dssp             CEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.91  E-value=0.018  Score=54.35  Aligned_cols=38  Identities=24%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|+++|.+||||||++..|+..+... .+..|.+++-+
T Consensus       101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~D  138 (433)
T 2xxa_A          101 AVVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSAD  138 (433)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecC
Confidence            478899999999999999999999764 14667777654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.91  E-value=0.0042  Score=56.22  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=21.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |-++|+|+||+||||+++.|+..+.
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHc
Confidence            3489999999999999999999663

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.90  E-value=0.0005  Score=58.08  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=20.8

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      |++++++|.||||||++|..+...
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHH
Confidence            679999999999999999886544

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.89  E-value=0.005  Score=55.95  Aligned_cols=34  Identities=32%  Similarity=0.336  Sum_probs=27.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +|.|.|++||||||+++.|+..+...  +..+.+.+
T Consensus       131 vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g  164 (328)
T 3e70_C          131 VIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAA  164 (328)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEe
Confidence            79999999999999999999888654  34555544

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.87  E-value=0.0006  Score=60.90  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|.|+||+|||++|+.|++.++.
T Consensus        38 ~lLl~GppGtGKT~la~aiA~~l~~   62 (293)
T 3t15_A           38 ILGIWGGKGQGKSFQCELVFRKMGI   62 (293)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5788999999999999999999864

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.86  E-value=0.0068  Score=55.91  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=28.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +++|.|.|||||||+|.+++......  +..+.+++-+
T Consensus        76 li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E  111 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAE  111 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             EEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECC
Confidence            78999999999999999998876443  3456666643

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.86  E-value=0.0046  Score=56.04  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=20.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      .+++|.|+||+||||+|.+++..
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            36799999999999999999876

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.84  E-value=0.00062  Score=59.16  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=22.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+||||+|+.|+..++.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~~   71 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAKV   71 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcCC
Confidence            3789999999999999999998753

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.84  E-value=0.00058  Score=57.31  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=22.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      +++|+|++||||||+.+.|...+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCc
Confidence            789999999999999999988764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.83  E-value=0.00048  Score=55.93  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+|+.+++.+..
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            5799999999999999999998854

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.83  E-value=0.008  Score=55.23  Aligned_cols=133  Identities=13%  Similarity=0.075  Sum_probs=62.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-ccCCC--cc-ccCCC-ch-hhHH-HHHHHHHHHHHhcCCC-
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-SFHLD--RN-QSYAS-MP-AEKN-LRGVLRSEVDRSVSKD-   74 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-~~~~~--~~-~~y~~-~~-~e~~-~r~~l~~~v~~~L~~~-   74 (303)
                      +|+|+|+.||||||+.+.|...+..   ....+.+++. .+...  ++ ..|.. .. .... ....+...+...+... 
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p  253 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEIPF---DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP  253 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCC---CceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence            6899999999999999999887653   2234444432 11110  11 11111 00 0000 0112233444555533 


Q ss_pred             CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcC--CCCCCHHHHHHHHH
Q 047717           75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKG--EAAYDDKIFEDLVR  140 (303)
Q Consensus        75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~--~~~~~~e~~~~l~~  140 (303)
                      ..+|++..-. ......+..+...+.+....+|-. +......|+.......  ...++.+.+.+...
T Consensus       254 d~~l~~e~r~-~~~~~~l~~l~~g~~~~l~t~H~~-~~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~  319 (361)
T 2gza_A          254 TRILLAELRG-GEAYDFINVAASGHGGSITSCHAG-SCELTFERLALMVLQNRQGRQLPYEIIRRLLY  319 (361)
T ss_dssp             SEEEESCCCS-THHHHHHHHHHTTCCSCEEEEECS-SHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHH
T ss_pred             CEEEEcCchH-HHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHHHHhccccccCCCHHHHHHHHH
Confidence            4555655432 222222222222223345566653 4666778877654322  12466665544433

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.82  E-value=0.0049  Score=50.42  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=19.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      +-|+|.|.+|+||||+.+.|..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4589999999999999999864

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.81  E-value=0.014  Score=48.29  Aligned_cols=38  Identities=29%  Similarity=0.379  Sum_probs=31.7

Q ss_pred             CEEEEEE-ccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVIC-GQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~-G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |++|.++ +-.|+||||+|..|+..+...  +..|.++|-+
T Consensus         1 M~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D   39 (206)
T 4dzz_A            1 MKVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTD   39 (206)
T ss_dssp             CEEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence            8888777 678899999999999999875  5678888744

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.81  E-value=0.00068  Score=58.71  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+||||+|+.++..++.
T Consensus        41 ~vll~G~~GtGKT~la~~la~~~~~   65 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVATEAQV   65 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999998864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.78  E-value=0.00067  Score=60.05  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ++|.|+|||||||+++.|+..++.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~   70 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL   70 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC
Confidence            789999999999999999988753

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.78  E-value=0.0032  Score=57.47  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=28.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      |++|.|.||+||||+|..++......  +..|.+++-
T Consensus        48 LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl   82 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL   82 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC
Confidence            89999999999999999999876542  456666663

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.77  E-value=0.0073  Score=57.08  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=21.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      -|+|.|+||+|||++|+.|+..+
T Consensus       169 ~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          169 GILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999999987

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.75  E-value=0.00068  Score=57.23  Aligned_cols=25  Identities=28%  Similarity=0.260  Sum_probs=22.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ..|+|+|++||||||+|.+|+++..
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC
Confidence            4689999999999999999998764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.74  E-value=0.0006  Score=57.88  Aligned_cols=24  Identities=25%  Similarity=0.551  Sum_probs=22.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .|+|.|+||+||||+|..|++.+.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999885

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.74  E-value=0.00075  Score=59.40  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+||||+|+.++..++.
T Consensus        53 ~~ll~G~~GtGKT~la~~la~~~~~   77 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVATETNA   77 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCC
Confidence            4889999999999999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.72  E-value=0.0056  Score=56.27  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=22.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|+|+|++||||||+.+.|...+..
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhcccC
Confidence            7899999999999999999988764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.71  E-value=0.0063  Score=56.80  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ++.|+|+|||||||++..|+-.
T Consensus       180 i~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHH
Confidence            7899999999999999988644

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.70  E-value=0.0015  Score=55.17  Aligned_cols=34  Identities=15%  Similarity=0.329  Sum_probs=25.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|+|||||||+++.|+..+...  +..+.+++
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~   58 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVT   58 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEE
Confidence            68999999999999999999665432  23455544

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.69  E-value=0.0015  Score=58.79  Aligned_cols=36  Identities=19%  Similarity=0.342  Sum_probs=29.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .+|+|+|++||||||++..|+..+...  +..+.+++.
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~  140 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAA  140 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred             eEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcc
Confidence            379999999999999999999988654  456666653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.69  E-value=0.00085  Score=60.02  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+||||+|+.|+..++.
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~~~~   75 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANECQA   75 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCcCHHHHHHHHHHHhCC
Confidence            4899999999999999999998753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.68  E-value=0.00085  Score=59.47  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=22.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+||||+|+.++..++.
T Consensus        56 ~vll~Gp~GtGKT~la~~la~~~~~   80 (297)
T 3b9p_A           56 GLLLFGPPGNGKTLLARAVATECSA   80 (297)
T ss_dssp             EEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhCC
Confidence            5899999999999999999998754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.68  E-value=0.002  Score=55.84  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      ++++++|.+||||||++..|+..+. .  +..+.+++-
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La~~l~-~--g~~v~vvd~   49 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFGRYLE-D--NYKVAYVNL   49 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT-T--TSCEEEEEC
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH-C--CCeEEEEeC
Confidence            5899999999999999999999887 4  566777663

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.68  E-value=0.0011  Score=55.90  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=23.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+++.+++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            6899999999999999999998864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.67  E-value=0.0069  Score=54.71  Aligned_cols=38  Identities=18%  Similarity=0.187  Sum_probs=27.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc----cCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES----EAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~----~~~~~v~~~~~~   40 (303)
                      ++.|.|.|||||||+|.+++......    +.+..+++++-+
T Consensus       109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e  150 (324)
T 2z43_A          109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE  150 (324)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred             EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence            78999999999999999998764221    113456666644

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.67  E-value=0.00093  Score=57.92  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=21.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHc
Q 047717            4 IVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++|.|+|||||||+++.|+..+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998875

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.67  E-value=0.0056  Score=54.65  Aligned_cols=65  Identities=18%  Similarity=0.383  Sum_probs=41.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      -++|+|+||+||||+|+.+++.++.     .++.++...+        ..   ..    .+...+...+..+.++++|..
T Consensus        40 ~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~--------~~---~~----~l~~~l~~~~~~~~~l~lDEi   99 (324)
T 1hqc_A           40 HLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAI--------EK---PG----DLAAILANSLEEGDILFIDEI   99 (324)
T ss_dssp             CCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTC--------CS---HH----HHHHHHTTTCCTTCEEEETTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEecccc--------CC---hH----HHHHHHHHhccCCCEEEEECC
Confidence            4789999999999999999998753     2333331111        10   11    222233334667789999987


Q ss_pred             CCchH
Q 047717           83 NSIKG   87 (303)
Q Consensus        83 n~~k~   87 (303)
                      .....
T Consensus       100 ~~l~~  104 (324)
T 1hqc_A          100 HRLSR  104 (324)
T ss_dssp             TSCCH
T ss_pred             ccccc
Confidence            76543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.67  E-value=0.006  Score=57.42  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|+++|++||||||++..|+..+...  +..+.+++.+
T Consensus        99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D  135 (425)
T 2ffh_A           99 NLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD  135 (425)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc
Confidence            368889999999999999999998754  4567666643

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.65  E-value=0.0037  Score=59.27  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=23.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +-++|.|+||+||||+|+.|++.++.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            35899999999999999999998754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.64  E-value=0.001  Score=60.44  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=22.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|.|+||+||||+++.|+..++.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~l~~   77 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASELQT   77 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCC
Confidence            5889999999999999999998854

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.63  E-value=0.0014  Score=55.28  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=23.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ++.|+|+|.+||||||++..|...+..
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~   56 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGN   56 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            478999999999999999999987643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.63  E-value=0.0018  Score=55.27  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=25.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.|||||||++.+++......  +..+++++
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~   58 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVA   58 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE
Confidence            78999999999999999987765432  34555554

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.62  E-value=0.0011  Score=52.51  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHc
Q 047717            4 IVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |+|.|.||+|||++|+.|+....
T Consensus        27 vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           27 VWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSST
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999987653

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.61  E-value=0.00089  Score=55.61  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      +|+|+|.+||||||+|.+|+..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS
T ss_pred             CEEEECCCCCcHHHHHHHHHhc
Confidence            4899999999999999998865

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.58  E-value=0.002  Score=59.03  Aligned_cols=35  Identities=31%  Similarity=0.378  Sum_probs=27.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +.|+|+|.||+||||++..|+..+...  +..+.+++
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~--g~kV~vi~  114 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHLIER--GHRVAVLA  114 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhC--CCceEEEe
Confidence            579999999999999999999988544  34454443

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.58  E-value=0.002  Score=53.42  Aligned_cols=25  Identities=36%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +++++|+|||||||++-+++..+..
T Consensus         5 i~vi~G~~gsGKTT~ll~~~~~~~~   29 (184)
T 2orw_A            5 LTVITGPMYSGKTTELLSFVEIYKL   29 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            8999999999999999777776643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.56  E-value=0.011  Score=48.12  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      +-|+|.|.+|+||||+.+.|...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999988643

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.54  E-value=0.0013  Score=58.18  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=22.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ++|.|+||+|||++|+.+++.++.
T Consensus        53 vll~G~~GtGKT~la~~la~~l~~   76 (310)
T 1ofh_A           53 ILMIGPTGVGKTEIARRLAKLANA   76 (310)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            789999999999999999999854

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.52  E-value=0.0032  Score=61.17  Aligned_cols=26  Identities=27%  Similarity=0.565  Sum_probs=23.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +.++|.|+||+||||+|+.|+..++.
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~l~~  134 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKSLGR  134 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            46899999999999999999999864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.49  E-value=0.0018  Score=57.47  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=22.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|.|+||+||||+|+.|++.+..
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~~~~   73 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAATLFD   73 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHcC
Confidence            5899999999999999999998854

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.49  E-value=0.0014  Score=55.37  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|++||||||+++.|+-.+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999999998754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.48  E-value=0.0014  Score=60.12  Aligned_cols=25  Identities=40%  Similarity=0.504  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+|||++|+.|++.++.
T Consensus        53 ~vll~GppGtGKT~la~~ia~~~~~   77 (363)
T 3hws_A           53 NILLIGPTGSGKTLLAETLARLLDV   77 (363)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3789999999999999999998854

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.46  E-value=0.0015  Score=57.53  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=21.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHc
Q 047717            4 IVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |+|.|+|||||||+++.|+..+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            78999999999999999998875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.46  E-value=0.0016  Score=54.71  Aligned_cols=24  Identities=33%  Similarity=0.679  Sum_probs=21.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|++||||||+.+.|+..+.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            689999999999999999998764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.45  E-value=0.0017  Score=59.43  Aligned_cols=27  Identities=26%  Similarity=0.423  Sum_probs=24.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|.++|+|+||+||||+++.++..+..
T Consensus        44 ~~~~li~G~~G~GKTtl~~~l~~~~~~   70 (389)
T 1fnn_A           44 YPRATLLGRPGTGKTVTLRKLWELYKD   70 (389)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence            358999999999999999999998854

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.45  E-value=0.0013  Score=55.96  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=21.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +++|+|++||||||+++.|+..+
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999876

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=96.45  E-value=0.015  Score=52.15  Aligned_cols=131  Identities=11%  Similarity=-0.004  Sum_probs=64.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcccc-CCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHh--cCCCCEE
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESE-AKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRS--VSKDNII   77 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~--L~~~~~V   77 (303)
                      +|.+++.|+||+||||+|+.|++..+... ...++..++..+          ....-..+|..+. .+...  .+..++|
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~----------~~~~id~ir~li~-~~~~~p~~~~~kvv   86 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG----------ENIGIDDIRTIKD-FLNYSPELYTRKYV   86 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS----------SCBCHHHHHHHHH-HHTSCCSSSSSEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc----------CCCCHHHHHHHHH-HHhhccccCCceEE
Confidence            47899999999999999999998643210 123444444211          0111234554333 23221  2345799


Q ss_pred             EEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q 047717           78 IVDSLNSI-KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRF  142 (303)
Q Consensus        78 IvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~  142 (303)
                      |+|..... +..-..|.....+.....++|.+...+.....-+..|.-.-....++++...+..+.
T Consensus        87 iIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A           87 IVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             EETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHHHHHHHHH
T ss_pred             EeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHHHHHHHHHh
Confidence            99975433 222333444444433344555554444433333334411111122445555555543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.45  E-value=0.003  Score=57.16  Aligned_cols=37  Identities=19%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|+|+|++||||||++..|+..+...  +..|.+++.+
T Consensus       106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D  142 (320)
T 1zu4_A          106 NIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAAD  142 (320)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            479999999999999999999988754  5667776643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.44  E-value=0.00083  Score=58.62  Aligned_cols=25  Identities=28%  Similarity=0.561  Sum_probs=22.4

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|+||+|||++|+.|+..++..
T Consensus        47 vll~G~~GtGKT~la~~la~~~~~~   71 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAHVP   71 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCC
Confidence            6799999999999999999988653

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.42  E-value=0.014  Score=52.73  Aligned_cols=26  Identities=19%  Similarity=0.206  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|.|+||+||||+|+.+++.+...
T Consensus        26 a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           26 ALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             eEEEECCCCchHHHHHHHHHHHHhCC
Confidence            58999999999999999999998753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.40  E-value=0.0018  Score=59.13  Aligned_cols=25  Identities=40%  Similarity=0.638  Sum_probs=23.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+|||++|+.+++.++.
T Consensus        72 ~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            6899999999999999999999874

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.35  E-value=0.0018  Score=61.27  Aligned_cols=25  Identities=28%  Similarity=0.319  Sum_probs=23.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+||||+|+.|++.++.
T Consensus        52 ~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           52 NILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4899999999999999999999865

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.35  E-value=0.0016  Score=58.90  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=22.5

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ||+++|+|+.||||||+.+.|....
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            5899999999999999999988654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.34  E-value=0.0039  Score=59.79  Aligned_cols=25  Identities=32%  Similarity=0.527  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+|||++|+.|+..++.
T Consensus       240 ~vLL~GppGtGKT~lAraia~~~~~  264 (489)
T 3hu3_A          240 GILLYGPPGTGKTLIARAVANETGA  264 (489)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred             cEEEECcCCCCHHHHHHHHHHHhCC
Confidence            3899999999999999999988754

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=96.33  E-value=0.0038  Score=54.35  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=33.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |.+|.++|-.|+||||+|..|+..+...  +.+|.++|-+
T Consensus         1 M~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D   38 (269)
T 1cp2_A            1 MRQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCD   38 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEEC
T ss_pred             CcEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCC
Confidence            8899999999999999999999999765  6778887744

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.33  E-value=0.0022  Score=59.41  Aligned_cols=25  Identities=28%  Similarity=0.252  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|+|.|+|||||||+++.|+..++.
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~~~~g  195 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLELCGG  195 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcCC
Confidence            7899999999999999999987643

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.33  E-value=0.0019  Score=59.42  Aligned_cols=25  Identities=40%  Similarity=0.517  Sum_probs=22.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+||||+|+.|++.++.
T Consensus        74 ~ill~Gp~GtGKT~la~~la~~l~~   98 (376)
T 1um8_A           74 NILLIGPTGSGKTLMAQTLAKHLDI   98 (376)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4899999999999999999998854

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.33  E-value=0.0035  Score=53.77  Aligned_cols=34  Identities=15%  Similarity=0.081  Sum_probs=27.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRII   37 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~   37 (303)
                      .+++++|.|||||||.+-+++..+...  +..+.++
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~   46 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVF   46 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEE
Confidence            489999999999999999998887654  3445554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.32  E-value=0.0039  Score=56.03  Aligned_cols=35  Identities=14%  Similarity=0.237  Sum_probs=27.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +|.|.|++||||||+++.|+..+...  +..+.+.+.
T Consensus       104 vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~  138 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAG  138 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEee
Confidence            78999999999999999999888653  345555443

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.32  E-value=0.003  Score=56.79  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=26.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc-cccCCccEEEe
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK-ESEAKETVRII   37 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~-~~~~~~~v~~~   37 (303)
                      -++|.|+||+|||++|..|+..+. ..  +..+..+
T Consensus       154 ~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~  187 (308)
T 2qgz_A          154 GLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLL  187 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEE
Confidence            578999999999999999999887 54  3445443

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.32  E-value=0.002  Score=61.06  Aligned_cols=24  Identities=29%  Similarity=0.601  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      -++|.|+||+|||++|+.+++.++
T Consensus        65 ~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           65 AVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEECCCcCCHHHHHHHHHHHhC
Confidence            478999999999999999999987

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=96.30  E-value=0.0038  Score=55.16  Aligned_cols=38  Identities=32%  Similarity=0.334  Sum_probs=32.8

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |++|.++|-.|+||||+|..|+..|...  +.+|.++|-+
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D   39 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCD   39 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence            8889999999999999999999999765  5678887743

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.29  E-value=0.0024  Score=56.64  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=26.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.|||||||+++.|+-.+... .+..+.+++
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~   71 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAM   71 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEe
Confidence            78999999999999999999877532 133455554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.27  E-value=0.0037  Score=57.24  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=23.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +.|.|+|+|||||||+.+.|...+..
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~~~~  100 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKMLTE  100 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            68999999999999999999987644

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.24  E-value=0.031  Score=52.63  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=28.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +++|+|.||+||||+|..++...... .+..|.+++-
T Consensus       202 l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~sl  237 (444)
T 2q6t_A          202 LNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSL  237 (444)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEES
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEC
Confidence            79999999999999999999876432 1445766653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.23  E-value=0.0024  Score=54.40  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=20.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ++.|.|+|||||||++..|+..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            7899999999999999999875

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.23  E-value=0.011  Score=55.77  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=53.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc---cCCc------cEEEecCCccCCCccccCCCch---hhHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES---EAKE------TVRIIDEASFHLDRNQSYASMP---AEKNLRGVLRSEVD   68 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~---~~~~------~v~~~~~~~~~~~~~~~y~~~~---~e~~~r~~l~~~v~   68 (303)
                      ||.|+|.|.|++||||+.+.|...-...   ..+.      ..+..++..+.+.+..++....   -++.++    ....
T Consensus         1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~----~~~~   76 (439)
T 1mky_A            1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMK----EVTL   76 (439)
T ss_dssp             -CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHH----HHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHH----HHHH
Confidence            7899999999999999999987432110   0000      0011111112221111222110   112233    2222


Q ss_pred             HhcC--CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCH
Q 047717           69 RSVS--KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE  112 (303)
Q Consensus        69 ~~L~--~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~  112 (303)
                      .++.  ..-++|+|+.........++..+.+..+.+..+|.-.++.
T Consensus        77 ~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~  122 (439)
T 1mky_A           77 NMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN  122 (439)
T ss_dssp             HHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCS
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence            3333  3356778987654444445555556667787777766664

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.22  E-value=0.0057  Score=51.30  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      +-|+|.|.+|+||||+.+.|...
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            46899999999999999988654

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.22  E-value=0.0025  Score=57.54  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|+|+||+|||++|+.+++.++.
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~~~   81 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEMSA   81 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhCC
Confidence            4899999999999999999988764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.22  E-value=0.0029  Score=55.54  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=22.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +++|+|+.||||||+.+.|...+..
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHhCCC
Confidence            7899999999999999999987754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.20  E-value=0.0036  Score=52.86  Aligned_cols=26  Identities=31%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|+|+|.+||||||++..|...+.
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            36799999999999999999987753

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.19  E-value=0.0031  Score=54.92  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=21.5

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|+|.||+|||++|+.|++.+..
T Consensus        32 vll~G~~GtGKt~la~~i~~~~~~   55 (265)
T 2bjv_A           32 VLIIGERGTGKELIASRLHYLSSR   55 (265)
T ss_dssp             EEEECCTTSCHHHHHHHHHHTSTT
T ss_pred             EEEECCCCCcHHHHHHHHHHhcCc
Confidence            789999999999999999987653

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.18  E-value=0.0026  Score=58.35  Aligned_cols=25  Identities=32%  Similarity=0.639  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|+||+|||++|+.|+..++.
T Consensus       119 ~vLl~GppGtGKT~la~aia~~~~~  143 (357)
T 3d8b_A          119 GILLFGPPGTGKTLIGKCIASQSGA  143 (357)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4889999999999999999998754

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.18  E-value=0.005  Score=62.42  Aligned_cols=25  Identities=28%  Similarity=0.587  Sum_probs=22.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|+||+|||.+|+.++..++..
T Consensus       514 vLl~GPPGtGKT~lAkaiA~e~~~~  538 (806)
T 3cf2_A          514 VLFYGPPGCGKTLLAKAIANECQAN  538 (806)
T ss_dssp             CEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred             EEEecCCCCCchHHHHHHHHHhCCc
Confidence            6899999999999999999988754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.18  E-value=0.0049  Score=55.30  Aligned_cols=35  Identities=31%  Similarity=0.390  Sum_probs=27.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -+|.|.|+.||||||+++.|+..+...  +..+.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g  135 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAA  135 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence            378999999999999999999988643  33455544

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.17  E-value=0.0027  Score=57.28  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+||||+|+.+++.+..
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~~   84 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELYG   84 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3789999999999999999998753

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.17  E-value=0.0044  Score=52.90  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=24.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|+|.||+|||++|-+++...... .+..+.+++
T Consensus        32 l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s   66 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVT   66 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeec
Confidence            79999999999999999987543211 123455554

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.15  E-value=0.0029  Score=52.86  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=22.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .|.|.|++||||||+.+.|+..+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            588999999999999999998875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.14  E-value=0.0035  Score=50.79  Aligned_cols=23  Identities=13%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+..+
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            68999999999999999999987

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.12  E-value=0.0052  Score=55.35  Aligned_cols=34  Identities=24%  Similarity=0.433  Sum_probs=27.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|+|.||+||||+|.+++......  +..+.+++
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~s  103 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS  103 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence            79999999999999999999776443  24566665

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.11  E-value=0.0031  Score=57.61  Aligned_cols=24  Identities=13%  Similarity=0.319  Sum_probs=22.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .++|+|+||+||||+++.+++.+.
T Consensus        47 ~vll~G~~G~GKT~la~~l~~~~~   70 (384)
T 2qby_B           47 SNLFLGLTGTGKTFVSKYIFNEIE   70 (384)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999874

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.07  E-value=0.0055  Score=56.34  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=28.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +++|.|.|||||||+|.+++......  +..+.+++-
T Consensus        65 ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~   99 (356)
T 1u94_A           65 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDA   99 (356)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence            79999999999999999998876543  345666664

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.03  E-value=0.0019  Score=51.12  Aligned_cols=22  Identities=14%  Similarity=0.157  Sum_probs=19.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l   25 (303)
                      |+|.|.||+|||++|+.|+...
T Consensus        30 vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           30 VFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             EEEEEETTCCHHHHHGGGCCTT
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            7899999999999999876543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.03  E-value=0.0048  Score=56.02  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+++.+++.+..
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999988753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.00  E-value=0.0042  Score=54.69  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      +++|.|+|||||||++..++..+.
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            789999999999999999987654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.00  E-value=0.0042  Score=55.90  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=21.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|++||||||+++.|+..+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhhc
Confidence            68999999999999999999887

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.99  E-value=0.0024  Score=57.58  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=22.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ++|.|+||+|||++|+.|+..++.
T Consensus        49 vll~G~pGtGKT~la~~la~~~~~   72 (331)
T 2r44_A           49 ILLEGVPGLAKTLSVNTLAKTMDL   72 (331)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCC
Confidence            789999999999999999998864

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.99  E-value=0.0034  Score=55.68  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=22.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |-++|+|+||+||||+|+.+++.+.
T Consensus        39 ~~~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           39 PHLLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             CCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             CeEEEECcCCcCHHHHHHHHHHHhc
Confidence            3489999999999999999999874

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.99  E-value=0.0035  Score=60.41  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=23.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +.++|+|+||+||||+|+.+++.++.
T Consensus        78 ~~lLL~GppGtGKTtla~~la~~l~~  103 (516)
T 1sxj_A           78 RAAMLYGPPGIGKTTAAHLVAQELGY  103 (516)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            36899999999999999999999854

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.97  E-value=0.0035  Score=51.70  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|+|.+|+||||+|..|.++
T Consensus        18 gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc
Confidence            3899999999999999998874

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.96  E-value=0.0022  Score=57.95  Aligned_cols=24  Identities=38%  Similarity=0.576  Sum_probs=22.0

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|.|+||+|||++|+.|++.++.
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~~   71 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLPE   71 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             EEEECCCCccHHHHHHHHHHhCcc
Confidence            789999999999999999998763

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.95  E-value=0.0061  Score=55.50  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=23.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .+|.|+|.||+||||+.+.|+..+...
T Consensus        57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~   83 (341)
T 2p67_A           57 LRLGVTGTPGAGKSTFLEAFGMLLIRE   83 (341)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            578999999999999999999887543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.95  E-value=0.036  Score=49.52  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .|+|.|.||+||||+.+.|..
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g   29 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLG   29 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.93  E-value=0.0071  Score=56.80  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=27.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +|+|+|+.||||||+.+.|...+...  ...++..++
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed  203 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVED  203 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEES
T ss_pred             eEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecc
Confidence            78999999999999999999888643  234555443

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.92  E-value=0.0075  Score=55.48  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=27.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +|.|.|+.||||||+++.|+..+...  +..+.+.+
T Consensus       159 vi~lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g  192 (359)
T 2og2_A          159 VIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAA  192 (359)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred             EEEEEcCCCChHHHHHHHHHhhcccc--CCEEEEec
Confidence            78999999999999999999988643  33455544

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.92  E-value=0.0047  Score=56.15  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=23.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|+|+||+||||+|+.+++.+..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5799999999999999999999865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.90  E-value=0.0079  Score=57.59  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=26.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +|.|.|++||||||+++.|+..+...  +..+.+.+
T Consensus       295 VI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g  328 (503)
T 2yhs_A          295 VILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAA  328 (503)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred             EEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEec
Confidence            78999999999999999999887643  33455543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.88  E-value=0.0041  Score=54.37  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ||-|+|.|.|||||||+.+.|...
T Consensus         1 m~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            1 MTHALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            889999999999999999998643

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.88  E-value=0.0045  Score=59.12  Aligned_cols=24  Identities=33%  Similarity=0.589  Sum_probs=22.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|.|+||+||||+|+.++..++.
T Consensus        52 vLL~GppGtGKT~Laraia~~~~~   75 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAGEANV   75 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC
Confidence            789999999999999999998764

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.86  E-value=0.0081  Score=53.64  Aligned_cols=36  Identities=25%  Similarity=0.257  Sum_probs=29.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .+|.++|.+||||||++..|+..+...  +..+.+++.
T Consensus        99 ~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~  134 (295)
T 1ls1_A           99 NLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA  134 (295)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecC
Confidence            368888999999999999999988654  456666664

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.81  E-value=0.0076  Score=54.88  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=23.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++.|.|+|||||||+.+.|...+..
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            47899999999999999999987753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.78  E-value=0.026  Score=48.15  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=19.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      +-|+|.|.+|+||||+.+.|..
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHcC
Confidence            3589999999999999998864

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.77  E-value=0.0084  Score=51.51  Aligned_cols=34  Identities=21%  Similarity=0.097  Sum_probs=27.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      .|++.|.||+||||++-.++..+...  +.+|.+.+
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~~~--G~~V~v~d   41 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQLRQ--GVRVMAGV   41 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHC--CCCEEEEE
Confidence            48999999999999999999988765  45665544

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=95.77  E-value=0.15  Score=43.83  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=29.0

Q ss_pred             EEEEE-EccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVI-CGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l-~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|.+ .|-.|+||||+|-.|+..+...  +..|.++|-+
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~--g~~VlliD~D   40 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQL--GHDVTIVDAD   40 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence            44444 6788999999999999999765  5678887744

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.75  E-value=0.0096  Score=53.84  Aligned_cols=38  Identities=16%  Similarity=0.181  Sum_probs=28.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      ++.|.|+|||||||+|-+++......+.+..+++++.+
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E   67 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE   67 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence            57899999999999999988766543224456677643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.74  E-value=0.0069  Score=48.47  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      ..|+|.|.||+||||+.+.|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4799999999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.74  E-value=0.024  Score=53.66  Aligned_cols=109  Identities=14%  Similarity=0.094  Sum_probs=51.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc---cCCc--cE--EEecC--CccCCCccccCCCch--hhHHHHHHHHHHHHHh
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES---EAKE--TV--RIIDE--ASFHLDRNQSYASMP--AEKNLRGVLRSEVDRS   70 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~---~~~~--~v--~~~~~--~~~~~~~~~~y~~~~--~e~~~r~~l~~~v~~~   70 (303)
                      |.|+|+|.||+||||+.+.|...-...   ..+.  +.  ..+..  ..+.+.+..++....  ..+.++......+.. 
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~-  102 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE-  102 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH-
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh-
Confidence            689999999999999999875321100   0000  00  00110  111111111121110  123333222222211 


Q ss_pred             cCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCH
Q 047717           71 VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE  112 (303)
Q Consensus        71 L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~  112 (303)
                       ...-++++|+.........++....+..+.+..+|.=.++.
T Consensus       103 -ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~  143 (456)
T 4dcu_A          103 -ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDN  143 (456)
T ss_dssp             -CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--
T ss_pred             -CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccc
Confidence             23456778887655555566666666677777776655553

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.73  E-value=0.067  Score=58.29  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=28.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +|+|.|.||+||||+|.+++......  +..+.+++-
T Consensus       734 lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~  768 (1706)
T 3cmw_A          734 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDA  768 (1706)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECT
T ss_pred             eEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEec
Confidence            79999999999999999999877543  345666663

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=95.73  E-value=0.0067  Score=51.78  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=30.4

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |.+ .++|-.|+||||+|..|+..+...  +.+|.++|-+
T Consensus         1 mkI-~vs~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D   37 (254)
T 3kjh_A            1 MKL-AVAGKGGVGKTTVAAGLIKIMASD--YDKIYAVDGD   37 (254)
T ss_dssp             CEE-EEECSSSHHHHHHHHHHHHHHTTT--CSCEEEEEEC
T ss_pred             CEE-EEecCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            664 449999999999999999999875  5778887743

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.73  E-value=0.011  Score=55.63  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      |.|+|.|.||+||||+.+.|..
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~   25 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAG   25 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            6899999999999999998753

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.73  E-value=0.006  Score=56.37  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=22.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +|+|+|++||||||+.+.|...+..
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcCc
Confidence            7899999999999999999988764

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.70  E-value=0.077  Score=57.80  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=28.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +++|.|.|||||||+|-+++......  +..+.+++-+
T Consensus       385 lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E  420 (1706)
T 3cmw_A          385 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE  420 (1706)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcc
Confidence            79999999999999999998776543  4466776643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.70  E-value=0.0049  Score=53.18  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            68999999999999999887544

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.69  E-value=0.011  Score=49.40  Aligned_cols=34  Identities=26%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRII   37 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~   37 (303)
                      .+++++|++||||||.+-.++..+...  +..+.++
T Consensus         9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~--g~kV~v~   42 (191)
T 1xx6_A            9 WVEVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVF   42 (191)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEE
Confidence            489999999999999999998887544  3445544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.64  E-value=0.018  Score=58.81  Aligned_cols=25  Identities=28%  Similarity=0.427  Sum_probs=22.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|+|+||+||||+++.|+..+..
T Consensus       193 ~vlL~G~pG~GKT~la~~la~~l~~  217 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQRIVK  217 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHhc
Confidence            3689999999999999999998843

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.62  E-value=0.0053  Score=52.53  Aligned_cols=23  Identities=30%  Similarity=0.265  Sum_probs=20.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999987544

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.62  E-value=0.006  Score=58.62  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=21.4

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHc
Q 047717            4 IVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |+|.|+||+||||+|+.|+..++
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998865

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.60  E-value=0.085  Score=46.21  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      .-|+|.|.|||||||+.+.|...
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999998653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.59  E-value=0.0068  Score=52.49  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=20.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999876543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.59  E-value=0.024  Score=50.73  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .|.|+|.||+||||+.+.|..
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            689999999999999998864

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.58  E-value=0.034  Score=53.17  Aligned_cols=36  Identities=11%  Similarity=-0.041  Sum_probs=28.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +++|.|.||+||||+|.+++...... .+..+.+++-
T Consensus       244 l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~  279 (503)
T 1q57_A          244 VIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML  279 (503)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES
T ss_pred             EEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec
Confidence            79999999999999999999877542 1345666653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.58  E-value=0.0058  Score=51.76  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ++.|.|+.||||||+.+.|+-.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999876

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.56  E-value=0.0068  Score=53.40  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      -|+|.|+||+|||++|..|+..+.
T Consensus       106 ~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          106 TIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhhc
Confidence            489999999999999999998753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.55  E-value=0.0076  Score=47.68  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+||||||+.+.|..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            489999999999999999875

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.54  E-value=0.011  Score=55.94  Aligned_cols=36  Identities=31%  Similarity=0.479  Sum_probs=28.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +++|.|.||+||||++..++...... .+..|.+++-
T Consensus       205 liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~  240 (454)
T 2r6a_A          205 LIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSL  240 (454)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEEC
Confidence            79999999999999999999876532 1345666663

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.54  E-value=0.0061  Score=52.65  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            689999999999999999876553

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.53  E-value=0.014  Score=53.24  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=27.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc----cCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES----EAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~----~~~~~v~~~~~~   40 (303)
                      .++.|.|.|||||||+|.+++......    +.+..+++++-+
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E  165 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE  165 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence            378999999999999999998763221    013456666643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.53  E-value=0.0071  Score=49.07  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=19.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      |.-|+|.|.+|+||||+.+.|..
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            1 MATIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             -CEEEEEEBTTSSHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            56799999999999999998763

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.52  E-value=0.007  Score=55.40  Aligned_cols=24  Identities=33%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      .++.|.|+|||||||+++.|+-..
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999998876

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.52  E-value=0.012  Score=55.65  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=28.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +++|+|.||+||||+|-+++......  +..+.+++-
T Consensus       199 liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSl  233 (444)
T 3bgw_A          199 FVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSL  233 (444)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECS
T ss_pred             EEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEEC
Confidence            89999999999999999999877543  456777663

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.49  E-value=0.0066  Score=55.72  Aligned_cols=25  Identities=36%  Similarity=0.448  Sum_probs=22.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+.|.|++||||||+++.|+..+..
T Consensus       172 k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          172 TVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999988753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.46  E-value=0.0074  Score=57.42  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+|||++|+.|+..+..
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999999853

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.45  E-value=0.0087  Score=47.13  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.||+||||+.+.|..
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999998864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.42  E-value=0.0084  Score=49.37  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      .|+|.|.+||||||+.+.|....
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999987643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.41  E-value=0.007  Score=53.27  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            68899999999999999987654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.41  E-value=0.071  Score=58.90  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +++|.|+||+||||+|.+++......  +..+.+++-+
T Consensus       385 lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E  420 (2050)
T 3cmu_A          385 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE  420 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcC
Confidence            79999999999999999998877543  3457776643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.40  E-value=0.0071  Score=53.53  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999999987554

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.40  E-value=0.0094  Score=49.83  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      +-|+|.|.+|+||||+.+.|...
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999998754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.39  E-value=0.0088  Score=52.04  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ++.|.|+.||||||+.+.|+-.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999998764

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=95.38  E-value=0.016  Score=52.71  Aligned_cols=38  Identities=21%  Similarity=0.376  Sum_probs=32.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |.+++++|..|+||||+|..|+..+...  +.+|.++|-+
T Consensus        16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D   53 (334)
T 3iqw_A           16 LRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTD   53 (334)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECC
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence            3588999999999999999999999765  5778887754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.37  E-value=0.0095  Score=46.94  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|++.|.+||||||+.+.|..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998874

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=95.36  E-value=0.016  Score=50.99  Aligned_cols=38  Identities=34%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             CEEEEEEcc-CCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVICGQ-PSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~G~-PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |.+|+|+|. +|+||||+|..|+..+...  +..|.++|-+
T Consensus        82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~--G~rVLLID~D  120 (271)
T 3bfv_A           82 VQSIVITSEAPGAGKSTIAANLAVAYAQA--GYKTLIVDGD  120 (271)
T ss_dssp             CCEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhC--CCeEEEEeCC
Confidence            457777765 9999999999999999764  6788888854

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.34  E-value=0.0077  Score=52.14  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            689999999999999999876543

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.34  E-value=0.012  Score=59.28  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|+|.||+||||+|+.|+..+..
T Consensus       209 ~vlL~G~~GtGKT~la~~la~~l~~  233 (758)
T 1r6b_X          209 NPLLVGESGVGKTAIAEGLAWRIVQ  233 (758)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999998854

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.33  E-value=0.0078  Score=52.31  Aligned_cols=23  Identities=30%  Similarity=0.392  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.33  E-value=0.0096  Score=49.18  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+||||||+.+.|...
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999998764

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.32  E-value=0.0095  Score=53.41  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=22.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++++|+|++|+||||+++++++.+.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~   55 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELN   55 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcC
Confidence            4789999999999999999998875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.31  E-value=0.0079  Score=52.74  Aligned_cols=23  Identities=35%  Similarity=0.444  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999987554

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=95.30  E-value=0.019  Score=51.81  Aligned_cols=37  Identities=19%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+++++|.+|+||||+|..|+..+...  +.+|.++|-+
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D   51 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTD   51 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCC
Confidence            478899999999999999999998765  6778888754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.28  E-value=0.0084  Score=51.45  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            688999999999999999876553

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.28  E-value=0.0084  Score=51.84  Aligned_cols=23  Identities=17%  Similarity=0.450  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999987554

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.27  E-value=0.0083  Score=52.41  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999987554

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.26  E-value=0.011  Score=46.79  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+||||||+.+.|..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.25  E-value=0.01  Score=52.18  Aligned_cols=22  Identities=36%  Similarity=0.404  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ++.|.|+.||||||+.+.|+-.
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.25  E-value=0.01  Score=47.03  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|++.|.+|+||||+.+.|..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999998864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.25  E-value=0.014  Score=45.80  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|++.|.+||||||+.+.|...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998753

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.24  E-value=0.0051  Score=59.13  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHc
Q 047717            4 IVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |+|.|+||+|||++|+.|+..+.
T Consensus        44 VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           44 VFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             EEEECCSSSSHHHHHHHGGGGBS
T ss_pred             eEeecCchHHHHHHHHHHHHHHh
Confidence            78999999999999999998774

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.23  E-value=0.011  Score=46.61  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999875

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=95.22  E-value=0.018  Score=51.49  Aligned_cols=37  Identities=32%  Similarity=0.616  Sum_probs=30.6

Q ss_pred             EEEEEEcc-CCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQ-PSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~-PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|+|+|. +|+||||+|..|+..+...  +..|.++|-+
T Consensus       105 kvI~vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID~D  142 (299)
T 3cio_A          105 NILMITGATPDSGKTFVSSTLAAVIAQS--DQKVLFIDAD  142 (299)
T ss_dssp             CEEEEEESSSSSCHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             eEEEEECCCCCCChHHHHHHHHHHHHhC--CCcEEEEECC
Confidence            46777775 8999999999999999764  6788888854

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.22  E-value=0.01  Score=47.27  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.||+||||+.+.|..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            489999999999999998763

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.22  E-value=0.011  Score=46.76  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999998653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.22  E-value=0.0088  Score=52.54  Aligned_cols=23  Identities=35%  Similarity=0.510  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            68899999999999999987554

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.22  E-value=0.011  Score=47.35  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+||||||+.+.|..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.22  E-value=0.0074  Score=51.37  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999986544

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.012  Score=48.04  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      +-|+|.|.+||||||+.+.|...
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999988653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.21  E-value=0.011  Score=46.77  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            489999999999999998864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.21  E-value=0.011  Score=47.23  Aligned_cols=21  Identities=19%  Similarity=0.271  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999998864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.21  E-value=0.0089  Score=52.70  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.19  E-value=0.0091  Score=52.30  Aligned_cols=23  Identities=30%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999987654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.19  E-value=0.011  Score=46.93  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=18.4

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      -|+|.|.||+||||+.+.|.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999885

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.19  E-value=0.01  Score=46.99  Aligned_cols=20  Identities=30%  Similarity=0.512  Sum_probs=18.1

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      -|+|.|.||+||||+.+.|.
T Consensus         4 ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            48999999999999999874

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.18  E-value=0.011  Score=53.04  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=21.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|+|.||+|||++|+.|......
T Consensus        28 vLi~Ge~GtGKt~lAr~i~~~~~~   51 (304)
T 1ojl_A           28 VLIHGDSGTGKELVARALHACSAR   51 (304)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHSSC
T ss_pred             EEEECCCCchHHHHHHHHHHhCcc
Confidence            789999999999999999987643

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.15  E-value=0.017  Score=56.50  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=26.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRII   37 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~   37 (303)
                      .+++|+|+||+||||+++.|...+...  +..+...
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~--g~~Vl~~  238 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAESL--GLEVGLC  238 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEe
Confidence            368999999999999999999888654  3445443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.15  E-value=0.011  Score=47.74  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.||+||||+.+.|...
T Consensus         6 ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.14  E-value=0.0097  Score=52.06  Aligned_cols=23  Identities=13%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999987544

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.13  E-value=0.012  Score=46.60  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            489999999999999998874

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=95.12  E-value=0.022  Score=51.95  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+++++|.+|+||||+|..|+..+...  +.+|.++|-+
T Consensus        27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D   63 (349)
T 3ug7_A           27 KYIMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVSTD   63 (349)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEECC
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            478889999999999999999998765  6778888744

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.11  E-value=0.01  Score=51.74  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68899999999999999987654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.09  E-value=0.013  Score=47.73  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|++.|.+|+||||+.+.|...
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999998753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.08  E-value=0.013  Score=46.27  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999875

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.06  E-value=0.015  Score=47.20  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .-|+|.|.+|+||||+.+.|..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4699999999999999999875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.06  E-value=0.011  Score=52.05  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68899999999999999987554

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=95.05  E-value=0.021  Score=52.22  Aligned_cols=38  Identities=21%  Similarity=0.379  Sum_probs=32.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHc--cccCCccEEEecCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALK--ESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~--~~~~~~~v~~~~~~   40 (303)
                      |.+++++|..|+||||+|..|+..+.  ..  +..|.++|-+
T Consensus        18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D   57 (348)
T 3io3_A           18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTD   57 (348)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECC
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECC
Confidence            45899999999999999999999987  54  6778887754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.05  E-value=0.013  Score=46.88  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.04  E-value=0.014  Score=46.71  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.04  E-value=0.012  Score=47.98  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.02  E-value=0.014  Score=47.32  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.01  E-value=0.011  Score=52.39  Aligned_cols=23  Identities=17%  Similarity=0.187  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68899999999999999987654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.00  E-value=0.014  Score=46.26  Aligned_cols=21  Identities=29%  Similarity=0.283  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999998854

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.99  E-value=0.014  Score=51.38  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .+.|.|++||||||+.+.|.....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987664

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=94.99  E-value=0.098  Score=50.49  Aligned_cols=39  Identities=8%  Similarity=0.219  Sum_probs=27.6

Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE  111 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~  111 (303)
                      .+-++|+|+.......-..++..++..+.+..+|.-.++
T Consensus       107 D~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~D  145 (528)
T 3tr5_A          107 DSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMD  145 (528)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            456888999886666666677777778888766654443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.98  E-value=0.0093  Score=54.13  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=21.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +++|+|++||||||+.+.|+..+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcC
Confidence            5899999999999999998877643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.98  E-value=0.015  Score=46.63  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      +-|+|.|.+|+||||+.+.|..
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999998864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.98  E-value=0.011  Score=51.52  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            688999999999999999876553

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.98  E-value=0.013  Score=47.00  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=18.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La   22 (303)
                      .-|+|.|.+|+||||+.+.|.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            358999999999999999875

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.97  E-value=0.013  Score=52.61  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=21.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      .++.|.|.|||||||+|.+++..
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.97  E-value=0.014  Score=47.06  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999874

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.96  E-value=0.016  Score=47.08  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      +.+|+|..||||||+.+.|.-.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            678999999999999999887664

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.95  E-value=0.014  Score=46.73  Aligned_cols=21  Identities=43%  Similarity=0.711  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.||+||||+.+.|..
T Consensus         8 ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHG
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            489999999999999999874

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.94  E-value=0.015  Score=47.41  Aligned_cols=22  Identities=32%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.92  E-value=0.0086  Score=49.69  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      ..|+|.|.+||||||+.+.|..
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999998763

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.89  E-value=0.015  Score=46.93  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+||||||+.+.|..
T Consensus        12 ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999998864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.89  E-value=0.014  Score=52.11  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++++|+|++|+||||+++++++..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc
Confidence            478999999999999999998875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.89  E-value=0.016  Score=45.69  Aligned_cols=20  Identities=25%  Similarity=0.316  Sum_probs=18.4

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.+.|..
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.89  E-value=0.015  Score=46.52  Aligned_cols=21  Identities=29%  Similarity=0.303  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.88  E-value=0.015  Score=47.15  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999998753

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.88  E-value=0.13  Score=56.96  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +++|.|.||+||||+|.+++......  +..+++++-+
T Consensus       734 lilIaG~PG~GKTtLalqlA~~~a~~--g~~VlyiS~E  769 (2050)
T 3cmu_A          734 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE  769 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence            79999999999999999999887653  3457777643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.86  E-value=0.016  Score=46.59  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        20 ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999998874

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.84  E-value=0.016  Score=47.26  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            489999999999999998875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.83  E-value=0.013  Score=51.42  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999987655

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.83  E-value=0.015  Score=53.51  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=22.4

Q ss_pred             EEEEE--EccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVI--CGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l--~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ..++|  +|+||+||||+++.+++.+..
T Consensus        51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~   78 (412)
T 1w5s_A           51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE   78 (412)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence            36777  999999999999999988754

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.83  E-value=0.017  Score=54.67  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|.|.|||||||++..++..+...
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~   72 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALIST   72 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999988654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.83  E-value=0.017  Score=46.41  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        14 ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            489999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.82  E-value=0.015  Score=53.41  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            688999999999999999987553

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.81  E-value=0.014  Score=58.79  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=22.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      -++|.|+||+|||++|+.|++.+.
T Consensus       203 ~vLL~G~pGtGKT~la~~la~~l~  226 (758)
T 3pxi_A          203 NPVLIGEPGVGKTAIAEGLAQQII  226 (758)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999999984

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.81  E-value=0.017  Score=46.29  Aligned_cols=21  Identities=14%  Similarity=0.354  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            489999999999999998865

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.80  E-value=0.024  Score=52.37  Aligned_cols=35  Identities=31%  Similarity=0.285  Sum_probs=26.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      -++|+|++||||||+++.|...+...  +..++++|.
T Consensus        37 ~~~i~G~~G~GKs~~~~~~~~~~~~~--~~~~~~~D~   71 (392)
T 4ag6_A           37 NWTILAKPGAGKSFTAKMLLLREYMQ--GSRVIIIDP   71 (392)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEES
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHHHC--CCEEEEEeC
Confidence            36899999999999999998776443  455666653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=94.80  E-value=0.017  Score=53.17  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=19.8

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      |.-|+|.|.+||||||+++++.-
T Consensus        33 ~~killlG~~~SGKST~~kq~~i   55 (362)
T 1zcb_A           33 LVKILLLGAGESGKSTFLKQMRI   55 (362)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCcHHHHHHHHHH
Confidence            34689999999999999999843

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.79  E-value=0.017  Score=46.54  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998753

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=94.74  E-value=0.19  Score=44.64  Aligned_cols=51  Identities=14%  Similarity=0.096  Sum_probs=30.2

Q ss_pred             HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhh
Q 047717           65 SEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERH  123 (303)
Q Consensus        65 ~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~  123 (303)
                      +.+...+.+|..||+|..  ..+.+    .+......+ .+||+.+| .+++.+ +.+|+
T Consensus       185 ~~V~~~~~~G~~vildid--~~g~~----~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~  236 (295)
T 1kjw_A          185 QSVREVAEQGKHCILDVS--ANAVR----RLQAAHLHP-IAIFIRPRSLENVLE-INKRI  236 (295)
T ss_dssp             HHHHHHHHTTCEEEECCC--TTHHH----HHHHTTCCC-EEEEECCSSHHHHHH-HCTTS
T ss_pred             HHHHHHHhcCCeEEEEeC--HHHHH----HHHhcccCC-eEEEEECCCHHHHHH-HHhcC
Confidence            346677788999999973  23322    111122234 68888876 555555 65554

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.74  E-value=0.018  Score=46.34  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999998864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.73  E-value=0.019  Score=50.19  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      .-|+|.|.|||||||+.+.|...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999998653

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=94.70  E-value=0.03  Score=51.21  Aligned_cols=37  Identities=16%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc--cccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK--ESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~--~~~~~~~v~~~~~~   40 (303)
                      .+++++|-+|.||||+|..|+-.+.  ..  +..|.++|-+
T Consensus        19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~--G~rVLLvD~D   57 (354)
T 2woj_A           19 KWIFVGGKGGVGKTTSSCSIAIQMALSQP--NKQFLLISTD   57 (354)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECC
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECC
Confidence            4789999999999999999999997  54  6778888754

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=94.68  E-value=0.053  Score=54.37  Aligned_cols=54  Identities=11%  Similarity=0.063  Sum_probs=31.5

Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCH-HHHHHHHHHhh
Q 047717           62 VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE-DHCRKWNKERH  123 (303)
Q Consensus        62 ~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~-e~~~~R~~~R~  123 (303)
                      .-.+.+...+.+|..||+|..  ..+    +..+......+ ++||+..|. +++.+ +..|+
T Consensus       608 t~~~~v~~~~~~g~~~ildi~--~~~----~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~  662 (721)
T 2xkx_A          608 TSVQSVREVAEQGKHCILDVS--ANA----VRRLQAAHLHP-IAIFIRPRSLENVLE-INKRI  662 (721)
T ss_pred             eeHHHHHHHHHCCCcEEEeCC--HHH----HHHHHhcccCC-EEEEEeCCcHHHHHH-HhccC
Confidence            344567778889999999973  122    11121112234 688888764 55544 65554

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.67  E-value=0.013  Score=57.45  Aligned_cols=25  Identities=32%  Similarity=0.640  Sum_probs=22.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++|.|+||+||||+|+.|+..+..
T Consensus        62 ~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           62 HVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             EEEEEeCCCCCHHHHHHHHhccCCc
Confidence            4789999999999999999998754

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=94.66  E-value=0.032  Score=50.47  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=31.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+++++|-+|+||||+|..|+..+...  +..|.++|-+
T Consensus        20 ~i~v~sgkGGvGKTTva~~LA~~lA~~--G~rVllvD~D   56 (329)
T 2woo_A           20 KWIFVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLISTD   56 (329)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEECC
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence            478899999999999999999999865  5678887744

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.65  E-value=0.019  Score=47.16  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+||||||+.+.|..
T Consensus        16 ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.65  E-value=0.016  Score=55.84  Aligned_cols=34  Identities=18%  Similarity=0.340  Sum_probs=25.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .|+|+|++||||||+.+.|...+..   ...++.+++
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i~~---~~giitied  295 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFIPP---DAKVVSIED  295 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCT---TCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCC---CCCEEEEcC
Confidence            4899999999999999998876643   234455543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.65  E-value=0.018  Score=46.33  Aligned_cols=21  Identities=38%  Similarity=0.346  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999998873

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.63  E-value=0.018  Score=53.31  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHcCCC
Confidence            688999999999999999986553

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=94.63  E-value=0.035  Score=47.19  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=27.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRII   37 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~   37 (303)
                      .|.+++|.+||||||.+-.++..+...  +..++++
T Consensus        29 ~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~   62 (214)
T 2j9r_A           29 WIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVF   62 (214)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEE
Confidence            478999999999999999998877654  4556554

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.63  E-value=0.016  Score=47.11  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|.|.||+||||+.+.|...+..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHHhhccc
Confidence            4899999999999999887765543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.61  E-value=0.02  Score=46.60  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=94.60  E-value=0.02  Score=46.97  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|++.|.||+||||+.+.|..
T Consensus        25 ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.60  E-value=0.019  Score=52.69  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            688999999999999999986553

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.59  E-value=0.019  Score=52.77  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHCCCC
Confidence            688999999999999999986553

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.59  E-value=0.02  Score=47.11  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999988653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.55  E-value=0.022  Score=46.49  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5899999999999999998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.55  E-value=0.021  Score=46.48  Aligned_cols=21  Identities=24%  Similarity=0.370  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            489999999999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.53  E-value=0.021  Score=47.12  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999998753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.53  E-value=0.021  Score=46.42  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        22 ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999998864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.53  E-value=0.02  Score=52.73  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            68899999999999999987654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.53  E-value=0.021  Score=46.62  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=19.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        10 ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            589999999999999999875

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.53  E-value=0.021  Score=46.71  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            489999999999999999865

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.52  E-value=0.022  Score=46.46  Aligned_cols=21  Identities=24%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        24 ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.52  E-value=0.02  Score=52.66  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            688999999999999999986553

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=94.51  E-value=0.022  Score=46.53  Aligned_cols=21  Identities=33%  Similarity=0.271  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.+..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999988765

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=94.51  E-value=0.18  Score=44.88  Aligned_cols=53  Identities=15%  Similarity=0.147  Sum_probs=33.9

Q ss_pred             HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhh
Q 047717           64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERH  123 (303)
Q Consensus        64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~  123 (303)
                      .+.+...+.+|..||+|-.  ..|.+    .+ +.......+||+.+| .+++.+|+..|+
T Consensus       179 ~~~V~~~~~~gk~viLdid--~qg~~----~l-k~~~~~pi~IFI~PpS~e~L~~r~~~r~  232 (292)
T 3tvt_A          179 VASVREVAEKGKHCILDVS--GNAIK----RL-QVAQLYPVAVFIKPKSVDSVMEMNRRMT  232 (292)
T ss_dssp             HHHHHHHHHHTCEEEECCC--THHHH----HH-HHTTCCCEEEEECCSCHHHHHHTCTTSC
T ss_pred             hHHHHHHHHcCCcEEEecc--chhhh----hc-ccccccceEEEEECCCHHHHHHHHhCCC
Confidence            3457777888999999973  34422    12 334445578888765 666777766554

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.51  E-value=0.022  Score=46.74  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        30 ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.51  E-value=0.015  Score=46.90  Aligned_cols=20  Identities=30%  Similarity=0.328  Sum_probs=17.9

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      -|+|.|.+|+||||+.+.|.
T Consensus        20 ~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999998764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.50  E-value=0.028  Score=56.66  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=26.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -++|+|+||+|||++|+.|++.+...  +...+.++
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~  556 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGD--EESMIRID  556 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEe
Confidence            48999999999999999999987432  23455554

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.50  E-value=0.02  Score=47.06  Aligned_cols=21  Identities=33%  Similarity=0.349  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.49  E-value=0.022  Score=46.24  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.48  E-value=0.021  Score=52.45  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +++|.|++||||||+.+.|...+
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            57899999999999999987543

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.47  E-value=0.017  Score=53.25  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=21.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      |.-|.|.|.||+||||+.+.|...
T Consensus         1 ~~~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            1 MLAVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             CCSEEEECCSSSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            667899999999999999999865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.46  E-value=0.023  Score=45.58  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.+..
T Consensus        10 ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.46  E-value=0.018  Score=51.34  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            688999999999999999876553

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.46  E-value=0.02  Score=46.32  Aligned_cols=21  Identities=14%  Similarity=0.254  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|++.|.+|+||||+.+.|..
T Consensus        20 ~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999998763

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.45  E-value=0.023  Score=46.40  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            489999999999999998865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.44  E-value=0.012  Score=52.97  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|+|+.||||||+.+.|+..+.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             EEEEECCCCchHHHHHHHHHcCCC
Confidence            689999999999999999876553

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.43  E-value=0.021  Score=52.66  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            688999999999999999986553

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.43  E-value=0.022  Score=46.31  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999998863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.42  E-value=0.022  Score=50.88  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|++||||||+.+.|. .+
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            67899999999999999998 44

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=94.41  E-value=0.021  Score=46.42  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .-|+|.|.+|+||||+.+.|..
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999998754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.40  E-value=0.022  Score=52.57  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            688999999999999999986553

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.38  E-value=0.024  Score=46.23  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            489999999999999998864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.37  E-value=0.047  Score=45.78  Aligned_cols=37  Identities=24%  Similarity=0.228  Sum_probs=30.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |-+.+..+-.|+||||+|..|+..+...  + +|.++|-+
T Consensus         1 kvI~v~s~KGGvGKTT~a~~LA~~la~~--g-~VlliD~D   37 (209)
T 3cwq_A            1 MIITVASFKGGVGKTTTAVHLSAYLALQ--G-ETLLIDGD   37 (209)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHTT--S-CEEEEEEC
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHHhc--C-CEEEEECC
Confidence            4456668999999999999999999875  5 78887743

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.37  E-value=0.024  Score=46.61  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        30 ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            589999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.35  E-value=0.025  Score=46.23  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.33  E-value=0.024  Score=47.21  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999998753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.33  E-value=0.025  Score=47.09  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|.|.+|+||||+.+.|...
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999988653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.32  E-value=0.022  Score=46.06  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999998864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.31  E-value=0.023  Score=50.50  Aligned_cols=22  Identities=36%  Similarity=0.444  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      |-|+|+|.|||||||+.+.|..
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g   46 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVG   46 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHHC
Confidence            6799999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.31  E-value=0.025  Score=46.70  Aligned_cols=21  Identities=19%  Similarity=0.346  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999998864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.28  E-value=0.019  Score=46.09  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus         9 ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998865

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.27  E-value=0.021  Score=47.18  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=18.2

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      -|+|.|.||+||||+.+.|.
T Consensus        27 ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48999999999999999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.26  E-value=0.018  Score=54.68  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +++.|.|+.||||||+++.|+..+
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcc
Confidence            468999999999999999998765

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.26  E-value=0.024  Score=46.77  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            489999999999999998863

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.24  E-value=0.027  Score=46.59  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .-|+|.|.+|+||||+.+.|..
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999998864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.24  E-value=0.027  Score=50.22  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      ..|.|.|.||+||||+.+.|..
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            4689999999999999999864

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=94.23  E-value=0.045  Score=47.45  Aligned_cols=36  Identities=33%  Similarity=0.346  Sum_probs=28.8

Q ss_pred             CEEEEE-EccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            1 MALIVI-CGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         1 M~LI~l-~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      |.+|.+ .|-.|+||||+|..|+..+. .  +.+|.++|-
T Consensus        27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~--g~~VlliD~   63 (267)
T 3k9g_A           27 PKIITIASIKGGVGKSTSAIILATLLS-K--NNKVLLIDM   63 (267)
T ss_dssp             CEEEEECCSSSSSCHHHHHHHHHHHHT-T--TSCEEEEEE
T ss_pred             CeEEEEEeCCCCchHHHHHHHHHHHHH-C--CCCEEEEEC
Confidence            345555 78899999999999999998 5  577888774

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.22  E-value=0.025  Score=52.57  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            689999999999999999986543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.19  E-value=0.02  Score=47.21  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=18.2

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      -|+|.|.||+||||+.+.|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999874

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=94.18  E-value=0.04  Score=53.80  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=31.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+++++|.+|+||||+|..|+..+...  +..|.++|-+
T Consensus         9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~--G~rVLlvd~D   45 (589)
T 1ihu_A            9 PYLFFTGKGGVGKTSISCATAIRLAEQ--GKRVLLVSTD   45 (589)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             EEEEEeCCCcCHHHHHHHHHHHHHHHC--CCcEEEEECC
Confidence            478999999999999999999998765  5678777744

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.18  E-value=0.026  Score=50.80  Aligned_cols=22  Identities=32%  Similarity=0.338  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|+|.+|+||||+|..|.++
T Consensus       146 ~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          146 GVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHhc
Confidence            4899999999999999999775

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=94.17  E-value=0.16  Score=50.72  Aligned_cols=24  Identities=17%  Similarity=0.094  Sum_probs=21.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      .-|+|.|.+|+||||++..|....
T Consensus        13 ~~I~IvG~~~aGKTTL~~~Ll~~~   36 (691)
T 1dar_A           13 RNIGIAAHIDAGKTTTTERILYYT   36 (691)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhc
Confidence            468999999999999999998643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.17  E-value=0.032  Score=49.14  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .-|+|.|.||+||||+.+.|..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHC
Confidence            5689999999999999999864

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=94.16  E-value=0.055  Score=45.39  Aligned_cols=36  Identities=19%  Similarity=0.215  Sum_probs=28.1

Q ss_pred             EEEEEEc-cCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICG-QPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G-~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +.|+|+| -+|+||||+|-.|+..+...  +.+|.+++.
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~--G~rVll~dp   38 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAA--GYRTAGYKP   38 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHT--TCCEEEECS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcc
Confidence            3456666 58999999999999999765  567777764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.16  E-value=0.025  Score=46.27  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=18.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998853

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.15  E-value=0.031  Score=47.24  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      +-|+|.|.+|+||||+.+.|..
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999998754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.15  E-value=0.028  Score=46.60  Aligned_cols=21  Identities=19%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            589999999999999998875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.14  E-value=0.018  Score=52.75  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Confidence            688999999999999999986543

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=94.13  E-value=0.027  Score=54.62  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .+|+|+|++|+||||+|.+++.
T Consensus       148 ~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          148 GWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Confidence            5899999999999999999864

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=94.13  E-value=0.052  Score=46.57  Aligned_cols=37  Identities=27%  Similarity=0.465  Sum_probs=29.1

Q ss_pred             EEEEE-EccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVI-CGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l-~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|.+ .+-.|+||||+|..|+..|...  +..|.++|-+
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~--g~~VlliD~D   40 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQK--GKKTVVIDFA   40 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence            45555 6678899999999999999865  5678887744

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=94.13  E-value=0.21  Score=46.22  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      -|+++|.+++||||+...|...+
T Consensus        13 ~I~iiG~~~~GKSTLi~~L~~~~   35 (405)
T 2c78_A           13 NVGTIGHVDHGKTTLTAALTYVA   35 (405)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHhhh
Confidence            58999999999999999998753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.13  E-value=0.025  Score=46.38  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=18.2

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      -|+|.|.+|+||||+.+.|.
T Consensus        31 ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999874

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=94.12  E-value=0.097  Score=48.12  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=19.8

Q ss_pred             CEEEEEEccCCCCHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La   22 (303)
                      |+.|++.|.+++||||+...|.
T Consensus        21 m~~i~iiG~~d~GKSTL~~~L~   42 (370)
T 2elf_A           21 MANVAIIGTEKSGRTSLAANLG   42 (370)
T ss_dssp             EEEEEEEESTTSSHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.11  E-value=0.027  Score=56.60  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+|||++|+.|++.++.
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~  514 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGI  514 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcC
Confidence            4899999999999999999999853

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.08  E-value=0.03  Score=46.51  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .-|+|.|.+|+||||+.+.|..
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~   29 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLT   29 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999998865

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.08  E-value=0.032  Score=45.52  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=18.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La   22 (303)
                      +-|+|.|.+|+||||+.+.|.
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~   38 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVK   38 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999999875

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.07  E-value=0.03  Score=46.20  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998875

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=94.06  E-value=0.03  Score=52.41  Aligned_cols=24  Identities=25%  Similarity=0.235  Sum_probs=21.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ..+.|.|.+||||||+.+.|....
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999998643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.04  E-value=0.027  Score=54.26  Aligned_cols=20  Identities=20%  Similarity=0.368  Sum_probs=0.0

Q ss_pred             EEEEEccCCCCHHHHHHH--HH
Q 047717            3 LIVICGQPSSGKSLAATC--LA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~--La   22 (303)
                      +++|.|++||||||+++.  ++
T Consensus        41 ~~~l~G~nGsGKSTL~~~~ll~   62 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQFLYN   62 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.04  E-value=0.029  Score=46.01  Aligned_cols=21  Identities=19%  Similarity=0.283  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        22 ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998863

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.03  E-value=1.4  Score=41.80  Aligned_cols=126  Identities=13%  Similarity=0.171  Sum_probs=62.7

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHH--hcCCCCEEEEcC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDR--SVSKDNIIIVDS   81 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~--~L~~~~~VIvD~   81 (303)
                      ++|.|.||+||||+++.|+.........  +..+.    .+..+        ....+ .+...+..  .++ ..+||+-.
T Consensus       154 ~~i~G~sGvGKTtL~~~l~~~~~~~~~~--i~V~~----~iGer--------ttev~-el~~~l~~~~~l~-~tvvv~~~  217 (473)
T 1sky_E          154 IGLFGGAGVGKTVLIQELIHNIAQEHGG--ISVFA----GVGER--------TREGN-DLYHEMKDSGVIS-KTAMVFGQ  217 (473)
T ss_dssp             EEEECCSSSCHHHHHHHHHHHHHHHTCC--CEEEE----EESSC--------HHHHH-HHHHHHHHTSGGG-GEEEEEEC
T ss_pred             EEEECCCCCCccHHHHHHHhhhhhccCc--EEEEe----eeccC--------chHHH-HHHHHhhhcCCcc-eeEEEEEc
Confidence            6889999999999999998766532111  11111    01010        11222 11111211  222 24566666


Q ss_pred             CCCchHHHHHH-------HHHHHH-cCCcEEEEEEecCH--HHHHHHHHHhhhc--CCCCCCHHHHHHHHHHhcCCC
Q 047717           82 LNSIKGYRYEL-------WCLARA-AGIRYCVLYCDLEE--DHCRKWNKERHEK--GEAAYDDKIFEDLVRRFEKPD  146 (303)
Q Consensus        82 ~n~~k~~R~~l-------~~~ak~-~~~~~~vI~l~~~~--e~~~~R~~~R~~~--~~~~~~~e~~~~l~~r~E~P~  146 (303)
                      .+-..++|+..       ....+. .|. ..++++|-=-  ..+.+-......+  +...|++.++..+..-||...
T Consensus       218 ~~d~pg~r~~~~~~~ltiAEyFrd~~G~-~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~  293 (473)
T 1sky_E          218 MNEPPGARMRVALTGLTMAEYFRDEQGQ-DGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERIT  293 (473)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHSCC-EEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhc
Confidence            66777887722       222233 344 3444454321  1222222222111  113588888988888888754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.02  E-value=0.017  Score=46.58  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=9.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        10 ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.01  E-value=0.031  Score=46.31  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.+..
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            489999999999999998874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.99  E-value=0.029  Score=50.04  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|++||||||+.+.|+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            67899999999999999886543

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=93.98  E-value=0.062  Score=45.97  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=29.0

Q ss_pred             CEEEEEEcc-CCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717            1 MALIVICGQ-PSSGKSLAATCLAEALKESEAKETVRII   37 (303)
Q Consensus         1 M~LI~l~G~-PGSGKSTlA~~La~~l~~~~~~~~v~~~   37 (303)
                      |+-|+|+|. +|+|||+++-.|+..|...+  ..|..+
T Consensus         4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G--~~V~~~   39 (228)
T 3of5_A            4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQN--IKSLCL   39 (228)
T ss_dssp             CEEEEEEESSSSSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHHHHHHCC--CeeEEe
Confidence            788999998 99999999999999998763  444443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=93.98  E-value=0.032  Score=46.14  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.|..
T Consensus        31 ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            489999999999999998864

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=93.95  E-value=0.076  Score=45.02  Aligned_cols=39  Identities=21%  Similarity=0.170  Sum_probs=29.7

Q ss_pred             CEEEEEE-ccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVIC-GQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~-G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |.+|.++ +-.|+||||+|..|+..+... .+.+|.++|-+
T Consensus         4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD~D   43 (245)
T 3ea0_A            4 KRVFGFVSAKGGDGGSCIAANFAFALSQE-PDIHVLAVDIS   43 (245)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHTTS-TTCCEEEEECC
T ss_pred             CeEEEEECCCCCcchHHHHHHHHHHHHhC-cCCCEEEEECC
Confidence            4555555 668999999999999999764 15678888754

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=93.95  E-value=0.022  Score=51.22  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|+|.+|+||||+|-.|.+
T Consensus       149 gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          149 GVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             EEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999998765

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=93.94  E-value=0.047  Score=48.10  Aligned_cols=36  Identities=33%  Similarity=0.357  Sum_probs=28.7

Q ss_pred             EEEEE-ccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVIC-GQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~-G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +|.|+ +-.|+||||+|..|+..|...  +..|.++|-+
T Consensus         6 vI~v~s~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D   42 (286)
T 2xj4_A            6 VIVVGNEKGGAGKSTIAVHLVTALLYG--GAKVAVIDLD   42 (286)
T ss_dssp             EEEECCSSSCTTHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHHC--CCcEEEEECC
Confidence            56554 678999999999999999765  5678887744

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=93.94  E-value=0.031  Score=51.42  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      +.|+|.|.|||||||+.+.|..
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~  201 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTG  201 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHC
Confidence            4689999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	2e-09
d1m7ga_	208	c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (A	2e-07
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	8e-07
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	9e-06
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	1e-05
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	4e-05
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	5e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	8e-05
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	2e-04
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	8e-04
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	0.004
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	0.004

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 21/146 (14%), Positives = 39/146 (26%), Gaps = 24/146 (16%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGV 62
           ++V  G P +GKS        +                                      
Sbjct: 16  VVVAVGFPGAGKSTFIQEHLVSAG----------------------YVHVNRDTLGSWQR 53

Query: 63  LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER 122
             S    ++ +   +++D+ N     R      A+ AG+           +  R  N+ R
Sbjct: 54  CVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR 113

Query: 123 HEKGE--AAYDDKIFEDLVRRFEKPD 146
                  A   D +     ++FE P 
Sbjct: 114 EMTDPSHAPVSDMVMFSYRKQFEPPT 139

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 15/187 (8%)

Query: 2   ALIVICGQPSSGKS-LAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
             I + G  +SGKS LA     + +++          D   F L+++  ++     +N+R
Sbjct: 25  LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIR 84

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRY-----ELWCLARAAGIRYCVLYCDLEEDHC 115
            +       + S    I        K         E+       G+ +  +Y D+  +  
Sbjct: 85  RIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVA 144

Query: 116 RKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDA 175
            + + +   K       K F  +   +E P       +P   +  Y+  ++++   I+D 
Sbjct: 145 EQRDPKGLYKKAREGVIKEFTGISAPYEAP------ANPEVHVKNYELPVQDAVKQIID- 197

Query: 176 VAYLTKK 182
             YL  K
Sbjct: 198 --YLDTK 202

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 46.2 bits (108), Expect = 8e-07
 Identities = 25/160 (15%), Positives = 42/160 (26%), Gaps = 19/160 (11%)

Query: 3   LIVICGQPSSGKSLAATCLAEALK----------ESEAKETVRIIDEASFHLDRNQSYAS 52
           +I++ G  S+GKS    CL   L             EA        E     D +   + 
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 53  MPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE 112
            P  + L G     V         II+D +        E W       +    +    + 
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFV-GDLDVLWVGVRCDG 123

Query: 113 DHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWD 152
                    R         D++     ++         +D
Sbjct: 124 AVAEGRETAR--------GDRVAGMAAKQAYVVHEGVEYD 155

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 43.2 bits (100), Expect = 9e-06
 Identities = 18/145 (12%), Positives = 52/145 (35%), Gaps = 1/145 (0%)

Query: 2   ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRG 61
             I + G  +SGK   A  L   L + +   +V ++   +   + +        +++   
Sbjct: 7   FTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLLLGDTVRHELSSELGFTREDRHTNI 65

Query: 62  VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121
              + V   +++    ++ +  +      +    A +    + +++     +HC + +K 
Sbjct: 66  QRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKR 125

Query: 122 RHEKGEAAYDDKIFEDLVRRFEKPD 146
                    + K F  +   +E P+
Sbjct: 126 GIYAAARRGEIKGFTGVDDPYETPE 150

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 2   ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRG 61
             + + G   +GK+  +  L E L            D     L++N  ++    E+N+R 
Sbjct: 20  CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR- 78

Query: 62  VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121
            +            + I   ++     R     +   A + +  ++ D     C + + +
Sbjct: 79  RIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 138

Query: 122 RHEKGEAAYDDKIFEDLVRRFEKPD 146
              K   A + K F  +   +EKP+
Sbjct: 139 GLYKKARAGEIKGFTGIDSEYEKPE 163

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 11/156 (7%)

Query: 2   ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE-----------ASFHLDRNQSY 50
            LIV+ G P+ GK+  +  L   L           + +             F L  N+  
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEG 62

Query: 51  ASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDL 110
             +  +  L  +       S    ++ + D+ N+ +  R  ++      G +   +    
Sbjct: 63  LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESIC 122

Query: 111 EEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPD 146
            +      N  + + G   Y ++  ++    F +  
Sbjct: 123 VDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRI 158

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 8/147 (5%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKE----SEAKETVRIIDEASFHLDRNQSYASMPAEKN 58
           +I+  G P SGKS  A             +       I+        +            
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63

Query: 59  LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKW 118
                +S +    S   +II    N     R      A+  G +      D+      K 
Sbjct: 64  QFDTAKSILYGGDSVKGVII-SDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122

Query: 119 NKERHEKGEAAYDDKIFEDLVRRFEKP 145
           N +R  K        +   + +   + 
Sbjct: 123 NSKRGTKA---VPIDVLRSMYKSMREY 146

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 8/146 (5%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGV 62
           + V+ G   SGKS  A+ +A  L  +               +   +       +  L+ +
Sbjct: 8   IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL 67

Query: 63  LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER 122
             +      +    +IV S       +     L R        +Y   + D      K R
Sbjct: 68  NDAAFAMQRTNKVSLIVCS-----ALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKAR 122

Query: 123 HEKGEAAYDDKIFEDLVRRFEKPDRR 148
             KG       +        ++P   
Sbjct: 123 --KGHFFKTQML-VTQFETLQEPGAD 145

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 22/149 (14%), Positives = 41/149 (27%), Gaps = 7/149 (4%)

Query: 4   IVICGQPSSGKSLAATCLAEALKESEAKETVRII-------DEASFHLDRNQSYASMPAE 56
           + I G  SSGKS+    LA     + A E  R         DE +         A     
Sbjct: 10  VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQR 69

Query: 57  KNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCR 116
                V  S     +  D I         +G  +               +      +   
Sbjct: 70  YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 129

Query: 117 KWNKERHEKGEAAYDDKIFEDLVRRFEKP 145
              +    + +     ++ + L+ +++ P
Sbjct: 130 DGLRSLGSQKQRQQFQQLLKKLLDKYKVP 158

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 24/175 (13%), Positives = 43/175 (24%), Gaps = 5/175 (2%)

Query: 1   MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR 60
           M + ++ G P  GKS     + E L         +II+   F L              +R
Sbjct: 1   MKIGIVTGIPGVGKSTVLAKVKEILDNQGIN--NKIINYGDFMLATALKLGYAKDRDEMR 58

Query: 61  GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120
            +   +                   +        +   A IR    Y      +      
Sbjct: 59  KLSVEK---QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEIN 115

Query: 121 ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDA 175
                   A    I     R   +       +S + E   +      +SA +  +
Sbjct: 116 PSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGS 170

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 20/151 (13%), Positives = 43/151 (28%), Gaps = 9/151 (5%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGV 62
           L +I G    GKS     LA  L  S   E   I                + A       
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALT--WKN 61

Query: 63  LRSEVDRSVSKDNIIIVDSLNSIKGYRYEL-WCLARAAGIRYCVLYCDLEEDHCRKWNKE 121
           +       +   N +++D +              A+   +    +      +   + +  
Sbjct: 62  ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDAL 121

Query: 122 RHEKGEAAYDDKIFEDLVRRFEKPDRRNRWD 152
           R +      D+++ E  +   E+ + +   +
Sbjct: 122 RKK------DEQMGERCLELVEEFESKGIDE 146

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 28/214 (13%), Positives = 70/214 (32%), Gaps = 37/214 (17%)

Query: 3   LIVICGQPSSGKSLAATCLAEALKESEA---KETVRIIDEASFHLDRNQSYASMPAEKNL 59
           LI + G  +SGKS     + + L ++E    ++ V I+ + SF+        +   +   
Sbjct: 4   LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 63

Query: 60  RG--------VLRSEVDRSVSKDNIIIVDSLNSIKGYR--------------YELWCLAR 97
                      L  +  + +++   + +   + +   R              +E      
Sbjct: 64  NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFY 123

Query: 98  AAGIRY-----CVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWD 152
           +  +R        +  D +    R+  ++  E+G         E ++ ++    +   ++
Sbjct: 124 SQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRD------LEQILSQYITFVKPA-FE 176

Query: 153 SPLFELCPYKDAIENSSAAILDAVAYLTKKVDSK 186
                   Y D I    A  L A+  + + +   
Sbjct: 177 EFCLPTKKYADVIIPRGADNLVAINLIVQHIQDI 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.86
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.81
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.71
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.7
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.65
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.61
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.57
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.56
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.48
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.44
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.43
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.41
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.36
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.36
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.32
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.32
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.27
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.27
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.26
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.24
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.22
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.22
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.19
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.18
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.16
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.15
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.13
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.13
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.1
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.09
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.08
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.01
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.98
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.95
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	98.94
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.9
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.89
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.88
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.79
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.77
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.75
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.73
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.7
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.67
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.66
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.64
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.62
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.61
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.6
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.58
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.57
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.55
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.55
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.49
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.41
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.27
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.15
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	98.0
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.87
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.83
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.76
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.75
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.74
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.73
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.71
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.7
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.66
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.61
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.58
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.56
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.46
d1okkd2	207	GTPase domain of the signal recognition particle r	97.45
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.43
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.42
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.39
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.37
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.36
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.33
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.29
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.24
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.19
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.16
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.08
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.08
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.06
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.05
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	97.03
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.0
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.98
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.93
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.92
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.86
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.84
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.82
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.69
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.66
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.55
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.51
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.51
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.49
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.49
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.48
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.46
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.43
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.35
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.34
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.31
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.3
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.3
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.29
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.26
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.21
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.19
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.19
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.19
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.18
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.16
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.15
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.15
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.09
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.07
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.05
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.05
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.04
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.04
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.03
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.91
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.91
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.87
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.81
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.79
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.77
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.77
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.75
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.74
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.7
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.69
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.68
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.65
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.64
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.62
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.57
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.54
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.54
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.54
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	95.54
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.53
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.53
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.51
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.5
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.5
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.49
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.47
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.4
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.33
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.32
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.31
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.28
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.27
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.26
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	95.25
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.24
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.21
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.21
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.2
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.19
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.18
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.15
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.13
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.11
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.1
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.1
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.09
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.09
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.08
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.06
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.0
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.0
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.99
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.98
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.98
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.92
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.86
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.85
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.84
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.83
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.83
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.8
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.78
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.76
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.74
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.74
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.68
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.67
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.65
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.64
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.63
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.57
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.55
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.51
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.5
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.48
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.48
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.26
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.26
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.25
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.22
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.21
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.19
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.19
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.12
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.09
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.08
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.05
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.03
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.99
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.99
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.89
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.81
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.77
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.72
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.72
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.71
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	93.66
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.52
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.39
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.37
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.33
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.23
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.14
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.96
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.84
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.82
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.41
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.31
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.23
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	92.23
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.27
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	90.89
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	90.43
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.42
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.39
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.12
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.91
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.86
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.82
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	89.51
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	89.41
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	89.12
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.08
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.91
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	88.59
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	88.31
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	87.67
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	87.42
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.82
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	86.77
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.21
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	86.21
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.1
d1xpua3	289	Transcription termination factor Rho, ATPase domai	85.55
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.15
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	84.8
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	84.59
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	84.54
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	83.79
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	83.72
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	83.61
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	83.26
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	82.52
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.5
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	81.72
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	81.18
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	80.9
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	80.81
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	80.29
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	80.03

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.4e-21  Score=161.77  Aligned_cols=132  Identities=17%  Similarity=0.151  Sum_probs=106.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      ||+|+|+|||||||+|++|++.++.       .+++.+.+..               +..+...+...|..|..||+|++
T Consensus        16 liil~G~pGsGKST~a~~l~~~~~~-------~~i~~D~~~~---------------~~~~~~~~~~~l~~g~~vIiD~t   73 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLVSAGY-------VHVNRDTLGS---------------WQRCVSSCQAALRQGKRVVIDNT   73 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTGGGTC-------EEEEHHHHCS---------------HHHHHHHHHHHHHTTCCEEEESC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC-------EEEchHHHHH---------------HHHHHHHHHHHHHCCCCceeeCc
Confidence            8999999999999999998765543       2233222210               11344466678888999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCCcee
Q 047717           83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDSPLF  156 (303)
Q Consensus        83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~pl~  156 (303)
                      |..+++|..+.++|+..++++++||+++|.++|++||..|.....  ..+++.++..+.++||+|...++|+....
T Consensus        74 ~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~~~~~~~~~~fe~P~~~Egf~~i~~  149 (172)
T d1yj5a2          74 NPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILE  149 (172)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGGSCSCEEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcccCccHHHHHHHHHHhCCCCCcccCCcEEEE
Confidence            999999999999999999999999999999999999999975432  24788999999999999998888886543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.81  E-value=1.4e-19  Score=145.25  Aligned_cols=138  Identities=17%  Similarity=0.127  Sum_probs=98.9

Q ss_pred             CE-EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-----CCC-ccccCCCchhhHHHHHHHHHHHHHhcC-
Q 047717            1 MA-LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-----HLD-RNQSYASMPAEKNLRGVLRSEVDRSVS-   72 (303)
Q Consensus         1 M~-LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-----~~~-~~~~y~~~~~e~~~r~~l~~~v~~~L~-   72 (303)
                      |. +|+|+|+|||||||+|++|.+....      ..+++.+.+     ... ......+...+...+......+...+. 
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~~------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNPG------FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYG   74 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTT------EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCCC------CEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence            53 8999999999999999998765431      222222111     000 111111222333344444444444443 


Q ss_pred             --CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q 047717           73 --KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR  147 (303)
Q Consensus        73 --~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~  147 (303)
                        .+..+|+|++++.+.++.++.++++..+.++++||+++|.++|.+|+.+|+.   +.++++++..+.++|+++..
T Consensus        75 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~~~  148 (152)
T d1ly1a_          75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREYLG  148 (152)
T ss_dssp             CSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG---GCCCHHHHHHHHHHHHHHHT
T ss_pred             hccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCC---CCCCHHHHHHHHHHHHhhcC
Confidence              4568999999999999999999999999999999999999999999999975   46799999999999987543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.3e-17  Score=134.35  Aligned_cols=143  Identities=16%  Similarity=0.143  Sum_probs=94.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-----CCccccCCCchhhHHHHHHHHHHHHHhcCCCCE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-----LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNI   76 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-----~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~   76 (303)
                      .+|+|+|+|||||||+|+.|+++++..+     +..++....     ......+.........+ .+...+...+..+..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~l~~~~-----~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQLHAAF-----LDGDFLHPRRNIEKMASGEPLNDDDRKPWLQ-ALNDAAFAMQRTNKV   80 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHTCEE-----EEGGGGCCHHHHHHHHTTCCCCHHHHHHHHH-HHHHHHHHHHHHCSE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCe-----echhhhhHHHHhhhhccCcceehhhhHHHHH-HHHHHHHHHHhccCc
Confidence            5899999999999999999999997642     222211000     00011111111222222 333344455556677


Q ss_pred             EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc-e
Q 047717           77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP-L  155 (303)
Q Consensus        77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p-l  155 (303)
                      ++++.......+|    +.++..+.++.+|||+||++++.+|+.+|..   +..+.+.++.....||+|.    |+.+ .
T Consensus        81 ~~~~~~~~~~~~~----~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~---~~~~~~~~~~~~~~~e~~~----~~e~~~  149 (171)
T d1knqa_          81 SLIVCSALKKHYR----DLLREGNPNLSFIYLKGDFDVIESRLKARKG---HFFKTQMLVTQFETLQEPG----ADETDV  149 (171)
T ss_dssp             EEEECCCCSHHHH----HHHHTTCTTEEEEEEECCHHHHHHHHHTSTT---CCCCHHHHHHHHHHCCCCC----TTCTTE
T ss_pred             eEeeccchHHHHH----HHHHHhCCCceEEeecCCHHHHHHHHHhCcC---CCccHHHHHhhHHHhhCCC----cccCCE
Confidence            8888776655554    4556778899999999999999999999864   4567888999999999876    3333 5


Q ss_pred             eeeCCC
Q 047717          156 FELCPY  161 (303)
Q Consensus       156 ~~i~~~  161 (303)
                      ++++.+
T Consensus       150 ~~id~~  155 (171)
T d1knqa_         150 LVVDID  155 (171)
T ss_dssp             EEEECS
T ss_pred             EEEeCC
Confidence            556643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.70  E-value=8.6e-18  Score=142.81  Aligned_cols=168  Identities=18%  Similarity=0.275  Sum_probs=110.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV   79 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv   79 (303)
                      .+|+|+|+|||||||+|+.|++++.... +..+++++.+.+  .+...-.|.....++.++ .+...+......+..||+
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~~~-r~~~~a~~~~~~g~~viv  102 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDNIRFGLNKDLGFSEADRNENIR-RIAEVAKLFADSNSIAIT  102 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHHTTTTTTTCCSSHHHHHHHHH-HHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchHHHHhhcCCCCCChhHHHHHHH-HHHHHHHHHhccCCceee
Confidence            5899999999999999999999885432 345566664432  222223455444444444 344345556678999999


Q ss_pred             cCCCCchHHHHHHHHHHH------HcCCcEEEEEEecCHHHHHHHHHHhhhcC--CCCCCHHHHHHHHHHhcCCCCCCCC
Q 047717           80 DSLNSIKGYRYELWCLAR------AAGIRYCVLYCDLEEDHCRKWNKERHEKG--EAAYDDKIFEDLVRRFEKPDRRNRW  151 (303)
Q Consensus        80 D~~n~~k~~R~~l~~~ak------~~~~~~~vI~l~~~~e~~~~R~~~R~~~~--~~~~~~e~~~~l~~r~E~P~~~~rw  151 (303)
                      +.....+..|...+.+..      ..+.++..|||+||.++|.+|..++....  ....  ..+..+...||+      |
T Consensus       103 ~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~~~~--~~~~gvd~~ye~------P  174 (208)
T d1m7ga_         103 SFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVI--KEFTGISAPYEA------P  174 (208)
T ss_dssp             ECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSS--SSCBTTTBCCCC------C
T ss_pred             ecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchhhhhcCcc--cceecccccCCC------C
Confidence            999999999988877643      34568999999999999999987653210  0000  001112234665      4


Q ss_pred             CCceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717          152 DSPLFELCPYKDAIENSSAAILDAVAYLTKK  182 (303)
Q Consensus       152 d~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~  182 (303)
                      ..|.++|+++..++   ++.+++|+++|.++
T Consensus       175 ~~~dl~Idt~~~s~---~e~~~~Ii~~L~~~  202 (208)
T d1m7ga_         175 ANPEVHVKNYELPV---QDAVKQIIDYLDTK  202 (208)
T ss_dssp             SSCSEEEECSSSCH---HHHHHHHHHHHHHT
T ss_pred             CCCcEEEeCCCCCH---HHHHHHHHHHHHHc
Confidence            56889998764433   34567777777764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.8e-16  Score=128.37  Aligned_cols=170  Identities=16%  Similarity=0.169  Sum_probs=94.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      ++|+|+|+|||||||+|+.|+++++..+.....+..++..........+.........+ .....+......+..++++.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR-RIAEVAKLFADAGLVCITSF   98 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHH-HHHHHHHHHHHTTCEEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHH-HHHHHHHHHHhcCCcccccc
Confidence            47999999999999999999999988654433333222111111111122111122222 33334555667889999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717           82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus        82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      .+.....+..+....+.....+..+++.++...+.+++.+|............+..+..+||+      |+.|.++|+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~------~~~~dl~IdT~  172 (195)
T d1x6va3          99 ISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEK------PEAPELVLKTD  172 (195)
T ss_dssp             CCCCHHHHHHHHHHHHTTTCCEEEEEECC------------------------------CCCC------CSSCSEEECTT
T ss_pred             ccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhhhhhhhhhhhhhhhhccccCC------CCCCCEEEECC
Confidence            999999998888888888888889999999998888887654321111222334444456666      45678999986


Q ss_pred             CcccccchHHHHHHHHHHHh
Q 047717          162 KDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       162 ~~~~~~~~~~~~ei~~~l~~  181 (303)
                      ..++   ++.+++|++.|-+
T Consensus       173 ~~s~---ee~~~~Il~~l~~  189 (195)
T d1x6va3         173 SCDV---NDCVQQVVELLQE  189 (195)
T ss_dssp             TSCH---HHHHHHHHHHHHH
T ss_pred             CCCH---HHHHHHHHHHHHH
Confidence            5443   4557777777765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.61  E-value=3.3e-15  Score=120.85  Aligned_cols=163  Identities=13%  Similarity=0.074  Sum_probs=94.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccc---cCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQ---SYASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~---~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      ++|+|+|+|||||||+|++|+++++..     +++-.+.........   .+............+...+...+..+..+|
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   77 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNS-----AYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVV   77 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSE-----EEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCC-----EEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            489999999999999999999998643     222222111110110   111111112222345556667778899999


Q ss_pred             EcCCCCchHHHHHHHHHHHH-cCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceee
Q 047717           79 VDSLNSIKGYRYELWCLARA-AGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFE  157 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~-~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~  157 (303)
                      +|+......++..+..+... .+.++.++|+.++.+++.+|+.+|+...  ......+..+.+ ++.+..     ...++
T Consensus        78 id~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~--~~~~~~~~~~~~-~~~~~~-----~~~~~  149 (176)
T d2bdta1          78 LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE--QMGERCLELVEE-FESKGI-----DERYF  149 (176)
T ss_dssp             EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC------CGGGGHHHHH-HHHTTC-----CTTSE
T ss_pred             cccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCch--hhhHHHHHHHHH-HHhCCC-----CCeEE
Confidence            99988877776654444333 3566778999999999999999997532  222233333222 222221     13455


Q ss_pred             eCCCCcccccchHHHHHHHHHHHh
Q 047717          158 LCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       158 i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      ++++...+    ..+.+++..+.+
T Consensus       150 id~~~~~~----~~~~~~I~~i~~  169 (176)
T d2bdta1         150 YNTSHLQP----TNLNDIVKNLKT  169 (176)
T ss_dssp             EECSSSCG----GGHHHHHHHHHH
T ss_pred             EECCCCCH----HHHHHHHHHHHh
Confidence            66554333    235666666654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.57  E-value=3.1e-14  Score=115.46  Aligned_cols=157  Identities=14%  Similarity=0.144  Sum_probs=93.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc---------CCCccccCCC------chhhHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF---------HLDRNQSYAS------MPAEKNLRGVLRSE   66 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~---------~~~~~~~y~~------~~~e~~~r~~l~~~   66 (303)
                      .+|+|+|+|||||||+|+.|++.++..     .+.++.+.+         .......+..      ......++..+...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEP-----WLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEG   78 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSC-----EEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCC-----eEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHH
Confidence            589999999999999999999998753     232221100         0000000110      01112233344444


Q ss_pred             HHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCC
Q 047717           67 VDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPD  146 (303)
Q Consensus        67 v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~  146 (303)
                      +......+..+|+++......+....+... ..+.++++|||.||.+++.+|+..|+.+    . ++........++.|.
T Consensus        79 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~e~~~~R~~~R~~~----~-~~~~~~~~~~~~~~~  152 (178)
T d1qhxa_          79 VVAMARAGARIIIDDVFLGGAAAQERWRSF-VGDLDVLWVGVRCDGAVAEGRETARGDR----V-AGMAAKQAYVVHEGV  152 (178)
T ss_dssp             HHHHHHTTCEEEEEECCTTTHHHHHHHHHH-HTTCCEEEEEEECCHHHHHHHHHHTSSS----C-TTHHHHHTTGGGTTC
T ss_pred             HHHHHhhccceEEeeeecchHHHHHHHHHh-hcCCceeecccCCCHHHHHHHHHhcCCc----c-hhhhhhhhhhhhcCC
Confidence            555566778888888765555444433322 3467889999999999999999988642    2 223334444454433


Q ss_pred             CCCCCCCceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717          147 RRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKK  182 (303)
Q Consensus       147 ~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~  182 (303)
                      .   +   -++|+++..+       .+|+.+.|.+.
T Consensus       153 ~---~---dl~IDts~~s-------~ee~a~~I~~~  175 (178)
T d1qhxa_         153 E---Y---DVEVDTTHKE-------SIECAWAIAAH  175 (178)
T ss_dssp             C---C---SEEEETTSSC-------HHHHHHHHHTT
T ss_pred             C---C---CEEEECCCCC-------HHHHHHHHHHh
Confidence            2   3   3788876443       46777766653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=9.7e-14  Score=116.13  Aligned_cols=122  Identities=12%  Similarity=0.099  Sum_probs=81.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc---CCCcc-ccCC-Cchhh-----HHHHHHHHHHHHHh-
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF---HLDRN-QSYA-SMPAE-----KNLRGVLRSEVDRS-   70 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~---~~~~~-~~y~-~~~~e-----~~~r~~l~~~v~~~-   70 (303)
                      .||+|+|+|||||||+|++|++++++.+.+..++..|....   ..... ..+. .....     +.....+....... 
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLS   82 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999987654433333332110   00000 0111 11111     11111222222222 


Q ss_pred             cCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           71 VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        71 L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      ...+.+||+|++|..+.+|+.+.++++..+....++++.|+.+.+.+++..+.
T Consensus        83 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (213)
T d1bifa1          83 EEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV  135 (213)
T ss_dssp             TTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred             hcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhHHHH
Confidence            24678999999999999999999999999999999999999998888876544

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.48  E-value=1.8e-13  Score=111.00  Aligned_cols=160  Identities=14%  Similarity=0.156  Sum_probs=98.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCcc--ccCCCchhh--HHHHHHHHHHHHHhcCCCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRN--QSYASMPAE--KNLRGVLRSEVDRSVSKDN   75 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~--~~y~~~~~e--~~~r~~l~~~v~~~L~~~~   75 (303)
                      .+|+|+|+|||||||+|+.|++.++.     ..+.++.+.+  .+...  ..+.....+  ......+...+...+..+.
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPGV-----PKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY   79 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSS-----CEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            48999999999999999999988764     3455543321  11110  111111111  1111133334555667788


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717           76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL  155 (303)
Q Consensus        76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl  155 (303)
                      .||+|+... ..+++.+    ...+..+..+|+.|+++++.+|+.+|+...  ....+.+..+...|+.+..     ...
T Consensus        80 ~vi~~~~~~-~~~~~~~----~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~--~~~~~~~~~~~~~~~~~~~-----~~~  147 (176)
T d1zp6a1          80 FVILDGVVR-PDWLPAF----TALARPLHYIVLRTTAAEAIERCLDRGGDS--LSDPLVVADLHSQFADLGA-----FEH  147 (176)
T ss_dssp             EEEECSCCC-TTTTHHH----HTTCSCEEEEEEECCHHHHHHHHHTTCTTS--CCCHHHHHHHHHHTTCCGG-----GGG
T ss_pred             CeEeccccc-HHHHHHH----HhcccccccccCCCCHHHHHHHHHhCCCcc--ccchhhHHHHHHHHhhccc-----ccC
Confidence            999998653 3333332    345667889999999999999999997632  3457888888888876432     123


Q ss_pred             eeeCCCCcccccchHHHHHHHHHHHh
Q 047717          156 FELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       156 ~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      +++++++.++   ++..++|+++|..
T Consensus       148 ~~idt~~~~~---ee~~~~I~~~l~~  170 (176)
T d1zp6a1         148 HVLPVSGKDT---DQALQSAINALQS  170 (176)
T ss_dssp             GEEECTTCCT---TTTTTTTHHHHHH
T ss_pred             EEEECCCCCH---HHHHHHHHHHHHc
Confidence            5566654333   2335666666654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.44  E-value=5.7e-14  Score=114.10  Aligned_cols=169  Identities=11%  Similarity=0.098  Sum_probs=86.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHH-HHHHHHHHhcCCCCEEEEc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRG-VLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~-~l~~~v~~~L~~~~~VIvD   80 (303)
                      .+|+|+|+|||||||+|+.|+++|+..++... ..++.+.........+. ...+...+. ...............+++.
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSV-SLLLGDTVRHELSSELG-FTREDRHTNIQRIAFVATELTRAGAAVIA   84 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE-EEEEHHHHHHHTCTTCC-CSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCCch-hhhhhHHhhhccccccc-hhHHHHHHHHHHHHHHhhhhhcccceeec
Confidence            47999999999999999999999987654332 22222111000000111 111111110 1111111222333444445


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCP  160 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~  160 (303)
                      +.......++............+..+++.++...+..|...+............+..+...|+      .|+.+-++|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~di~IDT  158 (183)
T d1m8pa3          85 APIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYE------TPEKADLVVDF  158 (183)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCC------CCSSCSEEECT
T ss_pred             ccchhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhhhcccchhhchhhhhhhhccccc------CCCCCcEEEEC
Confidence            444555556666666666677777888888888877776543211000000000111112233      37778899997


Q ss_pred             CCcccccchHHHHHHHHHHHh
Q 047717          161 YKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       161 ~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      ++.++   ++..++|+++|-+
T Consensus       159 ~~~s~---~e~v~~I~~~L~~  176 (183)
T d1m8pa3         159 SKQSV---RSIVHEIILVLES  176 (183)
T ss_dssp             TTSCH---HHHHHHHHHHHHH
T ss_pred             CCCCH---HHHHHHHHHHHHH
Confidence            64432   3456666666654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.43  E-value=9.4e-14  Score=113.45  Aligned_cols=128  Identities=11%  Similarity=0.120  Sum_probs=71.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--------cCCCccccCCCchhhHHHHHHHHHHHHHhcCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--------FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSK   73 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--------~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~   73 (303)
                      .+|+|.|+|||||||+++.|+++|+..+.+..++..++..        .............................+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK   81 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHhC
Confidence            4899999999999999999999998875444444433211        00111111111111111111111122234567


Q ss_pred             CCEEEEcCCCCch-------HHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHH
Q 047717           74 DNIIIVDSLNSIK-------GYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDK  133 (303)
Q Consensus        74 ~~~VIvD~~n~~k-------~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e  133 (303)
                      +.++++|+.....       ++...+    .....+..+||++++++++.+|..+|...+......+
T Consensus        82 ~~~vl~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~  144 (190)
T d1khta_          82 ESPVAVDTHSTVSTPKGYLPGLPSWV----LNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTAS  144 (190)
T ss_dssp             TSCEEEECCSEEEETTEEEESSCHHH----HHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHH
T ss_pred             CCeEEECCcccchHHHHHHHhhhhhh----hhhccccceeeecCCHHHHHHHHHHhccccCCcccHH
Confidence            7889999854321       111111    1223467799999999999999887654332333433

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.41  E-value=9e-14  Score=114.08  Aligned_cols=121  Identities=13%  Similarity=0.164  Sum_probs=65.2

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC--------ccCCCccccCCCch-hhHHHHHHHHHHHHHh-
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA--------SFHLDRNQSYASMP-AEKNLRGVLRSEVDRS-   70 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~--------~~~~~~~~~y~~~~-~e~~~r~~l~~~v~~~-   70 (303)
                      |.+|+|+|+|||||||+++.|+++|+..+....++..++.        .............. ............+.+. 
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEA   80 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHH
Confidence            9999999999999999999999999876433333332211        00000000111111 1111111111111111 


Q ss_pred             -cCCCCEEEEcCCCCc-------hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhc
Q 047717           71 -VSKDNIIIVDSLNSI-------KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEK  125 (303)
Q Consensus        71 -L~~~~~VIvD~~n~~-------k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~  125 (303)
                       ......+|+|+..+.       .++...+..    ...+.++||+++|++++.+|..+|...
T Consensus        81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~l~~~~~~~~~R~~~r~~~  139 (194)
T d1nksa_          81 RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVIT----EINPSVIFLLEADPKIILSRQKRDTTR  139 (194)
T ss_dssp             HHTCSSEEEEEECSEEEETTEEEESSCHHHHH----HHCCSEEEEEECCHHHHHHHHHHCTTT
T ss_pred             HHhCCCcEEEEccCchHHHHHHHHhHHHHHHh----hhccccceEEecCHHHHHHHHHHhhhc
Confidence             134456666653321       111222221    124678999999999999999887653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.36  E-value=6.9e-13  Score=110.06  Aligned_cols=113  Identities=13%  Similarity=0.115  Sum_probs=72.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-----ccCCC---------ccccCCCchhhHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-----SFHLD---------RNQSYASMPAEKNLRGVLRSEV   67 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-----~~~~~---------~~~~y~~~~~e~~~r~~l~~~v   67 (303)
                      ++|+|.|+|||||||+|+.|+++++..+     +..++.     .....         ....+..   .......+....
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~~g~~~-----i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   78 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRDFGWVH-----LSAGDLLRQEQQSGSKDGEMIATMIKNGEIVP---SIVTVKLLKNAI   78 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCC---HHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHCCce-----EchhhHHHHHhhhhhhhhhhhhhHhhhccccc---hHHHHHHHHHHh
Confidence            4889999999999999999999997542     222211     00000         0000000   111111122111


Q ss_pred             HHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           68 DRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        68 ~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                        .......+|+||.......+..+.........+.++||++||++++.+|+.+|+.
T Consensus        79 --~~~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~  133 (194)
T d1qf9a_          79 --DANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE  133 (194)
T ss_dssp             --HTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             --hhhhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhcc
Confidence              1233456899998888887777766666666788999999999999999998875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.6e-11  Score=103.09  Aligned_cols=156  Identities=17%  Similarity=0.131  Sum_probs=88.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-C--------CccccCCCc----hhhH-----HHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-L--------DRNQSYASM----PAEK-----NLRGVL   63 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~--------~~~~~y~~~----~~e~-----~~r~~l   63 (303)
                      .+|+|.|++||||||+++.|+++|...+... +++..+..-. .        .....+.+.    ..+.     .....+
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~-~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRD-MVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV   81 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCC-EEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCCCe-EEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHHH
Confidence            3799999999999999999999998764322 2222221100 0        000011111    1111     111122


Q ss_pred             HHHHHHhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC-CCC
Q 047717           64 RSEVDRSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE-AAY  130 (303)
Q Consensus        64 ~~~v~~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~-~~~  130 (303)
                      ...+..++..|.+||+|-..+            ...+-..++..+...-.|..+||+++|+++|.+|+.+|+.... +.-
T Consensus        82 ~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~~~~~~~  161 (210)
T d4tmka_          82 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQE  161 (210)
T ss_dssp             HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTTS
T ss_pred             HHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccccchhhhc
Confidence            233556778999999995321            1122223333333345688999999999999999999976321 122


Q ss_pred             CHHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          131 DDKIFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       131 ~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      +.+.+.++.+.|..-...   +...++|+++
T Consensus       162 ~~~~~~~v~~~y~~~~~~---~~~~~~IDa~  189 (210)
T d4tmka_         162 SFDFFNRTRARYLELAAQ---DKSIHTIDAT  189 (210)
T ss_dssp             CHHHHHHHHHHHHHHHHT---CTTEEEEETT
T ss_pred             cHHHHHHHHHHHHHHHhc---CCCEEEEECC
Confidence            457777777766531111   1135677754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.32  E-value=1.2e-13  Score=112.05  Aligned_cols=108  Identities=16%  Similarity=0.083  Sum_probs=63.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      .|+|+|+|||||||+|+.|+++++..    .++..++.    .........+............+...+...+..+..++
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   82 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAELDGF----QHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHV   82 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSTTE----EEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhCCC----cEEeHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhccccc
Confidence            68999999999999999999998632    22222211    00000000011111112222244445566777778888


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      +|+.....         .+ ....+.+|||+||++++.+|+.+|+.
T Consensus        83 ~~~~~~~~---------~~-~~~~~~vI~L~~~~e~l~~Rl~~R~~  118 (174)
T d1y63a_          83 VDYHSSEL---------FP-ERWFHMVVVLHTSTEVLFERLTKRQY  118 (174)
T ss_dssp             EECSCCTT---------SC-GGGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             ccHHHHHH---------HH-HhcCceEEEEECCHHHHHHHHHhCCC
Confidence            88754211         01 12244689999999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=5.7e-12  Score=105.28  Aligned_cols=156  Identities=10%  Similarity=0.124  Sum_probs=88.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC---------ccccCCCc-hhhHHHHHHHH-------
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD---------RNQSYASM-PAEKNLRGVLR-------   64 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~---------~~~~y~~~-~~e~~~r~~l~-------   64 (303)
                      ++|+|.|..||||||+++.|+++|...  +..++.+.+...+..         ....+.+. ....... .+.       
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~--g~~v~~~~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~l~~~~~~~~   77 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAA--GRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMA-TLFALDRAGA   77 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHH-HHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEecCCCCCccchhhhhhhccccccccccchHHHH-HHHHHHHHHH
Confidence            479999999999999999999999876  345655543211100         00112211 1111111 111       


Q ss_pred             -HHHHHhcCCCCEEEEcCCCCch--------------HHHHHHHHH---HHHcCCcEEEEEEecCHHHHHHHHHHhhhcC
Q 047717           65 -SEVDRSVSKDNIIIVDSLNSIK--------------GYRYELWCL---ARAAGIRYCVLYCDLEEDHCRKWNKERHEKG  126 (303)
Q Consensus        65 -~~v~~~L~~~~~VIvD~~n~~k--------------~~R~~l~~~---ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~  126 (303)
                       .........+.+||+|-..+..              .+...+..+   ......|.++||+++|++++.+|+.+|++..
T Consensus        78 ~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~  157 (208)
T d1gsia_          78 VHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRD  157 (208)
T ss_dssp             HHHHHHHHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             HHhHHHHhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhhccc
Confidence             1222334568899999632110              001111111   1112357889999999999999999998643


Q ss_pred             C----CCC--CHHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717          127 E----AAY--DDKIFEDLVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       127 ~----~~~--~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      +    +.+  ..+.+.++.+.|.+- ....|..|+.+|+.+
T Consensus       158 ~~~~~d~~e~~~~y~~~~~~~Y~~~-~~~~~~~~~~vIDa~  197 (208)
T d1gsia_         158 PGRARDNYERDAELQQRTGAVYAEL-AAQGWGGRWLVVGAD  197 (208)
T ss_dssp             TTCCCCTTTTCHHHHHHHHHHHHHH-HHHTTTSEEEEECTT
T ss_pred             ccccccchhhHHHHHHHHHHHHHHH-HHhcCCCCEEEEeCC
Confidence            2    122  346666666665541 123466788889865

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.27  E-value=1.4e-12  Score=106.09  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=62.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      -|+|+|+|||||||+|+.|+++|+..+++.+.++-  ...+..-.+.+. ...+..++......+......+.++++.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie--~~~g~~i~ei~~-~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~   80 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQ--HTSGMTVADVVA-AEGWPGFRRRESEALQAVATPNRVVATGGG   80 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHH--HHHCSCHHHHHH-HHHHHHHHHHHHHHHHHHCCSSEEEECCTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhh--hhhhhhhhhhhc-ccchHHHHHHHHHHHHhhccccceeccccc
Confidence            46788999999999999999999865322111100  011111011111 122344443444444444455554444443


Q ss_pred             CC-chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           83 NS-IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        83 n~-~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .. ....|.    +.+..+.   +||+++|.+++.+|...|..
T Consensus        81 ~~~~~~~~~----~l~~~~~---~v~L~~~~e~l~~Rl~~~~~  116 (170)
T d1e6ca_          81 MVLLEQNRQ----FMRAHGT---VVYLFAPAEELALRLQASLQ  116 (170)
T ss_dssp             GGGSHHHHH----HHHHHSE---EEEEECCHHHHHHHHHHHHC
T ss_pred             chhhhHHHH----hhhccce---eEEEecCchhHHHHHhhccc
Confidence            22 222232    2344443   89999999999999887755

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=3.1e-12  Score=104.89  Aligned_cols=131  Identities=17%  Similarity=0.178  Sum_probs=76.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CC-ccc------cC---CCchhhHHHHHHHHHHHHHhc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LD-RNQ------SY---ASMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~-~~~------~y---~~~~~e~~~r~~l~~~v~~~L   71 (303)
                      -|+|.|+|||||||+|+.|+++++..+     +..++.-.. .. ...      .+   ............+...+ ...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~-----i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~~   75 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQ-----ISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRL-NNP   75 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCE-----EEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHT-TSG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCce-----EchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHh-hCc
Confidence            477789999999999999999997642     222221000 00 000      00   00001112222222221 112


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRF  142 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~  142 (303)
                      .....+|+|+..........+.......+ .+..+++++++.+++.+|+..|.+.   ...++.+..-...|
T Consensus        76 ~~~~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~---~~~~~~i~~rl~~y  144 (181)
T d2cdna1          76 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRA---DDTDDVILNRMKVY  144 (181)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCT---TCSHHHHHHHHHHH
T ss_pred             cccccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccc---cchhHHHHHHHHHH
Confidence            34567999998877777777766554443 4567999999999999999998762   34556554433333

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=2.9e-11  Score=100.22  Aligned_cols=139  Identities=13%  Similarity=0.143  Sum_probs=75.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec---CCccCCCc--cccCCCc--hhhHHHHHHHHHHHH-HhcCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID---EASFHLDR--NQSYASM--PAEKNLRGVLRSEVD-RSVSK   73 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~---~~~~~~~~--~~~y~~~--~~e~~~r~~l~~~v~-~~L~~   73 (303)
                      |+|+|.|+|||||||+|+.|+++++..+++..-.+..   ........  ...+...  .........+..... .....
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKAN   88 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhhhccC
Confidence            7899999999999999999999997643221100000   00000000  0000000  011122212222222 22345


Q ss_pred             CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcC-CCCCCHHHHHHHHHHhc
Q 047717           74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKG-EAAYDDKIFEDLVRRFE  143 (303)
Q Consensus        74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~-~~~~~~e~~~~l~~r~E  143 (303)
                      ...+|+|+.......   ...+.+....+..++++++|.+++.+|...|.... ......+.+..-...|.
T Consensus        89 ~~~~vl~g~p~~~~q---~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~  156 (196)
T d1ukza_          89 KHKFLIDGFPRKMDQ---AISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFK  156 (196)
T ss_dssp             CCEEEEETCCCSHHH---HHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHH
T ss_pred             CCceeeeccchhHHH---HHHHHHhccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Confidence            578899997655443   33344455667789999999999999998776421 11234455555444443

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=1.1e-11  Score=101.60  Aligned_cols=117  Identities=12%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCccc-------cC-C--CchhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRNQ-------SY-A--SMPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~~-------~y-~--~~~~e~~~r~~l~~~v~~   69 (303)
                      |. |+|.|+|||||||+|+.|+++++..+     +..++.-.. .....       .+ .  ...........+...+..
T Consensus         3 mr-Ivl~G~pGSGKtT~a~~La~~~g~~~-----i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~   76 (180)
T d1akya1           3 IR-MVLIGPPGAGKGTQAPNLQERFHAAH-----LATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN   76 (180)
T ss_dssp             CE-EEEECCTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             eE-EEEECCCCCCHHHHHHHHHHHhCCce-----EeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhc
Confidence            44 55679999999999999999997642     222211000 00000       00 0  000011111122223333


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhh
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      .......+|+|+..........+.++....+. +.++|+++++.+++.+|+..|.
T Consensus        77 ~~~~~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~  131 (180)
T d1akya1          77 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNAD  131 (180)
T ss_dssp             CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHH
T ss_pred             CccccCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccc
Confidence            22344678999988888777777776665554 6789999999999999987653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.1e-10  Score=99.64  Aligned_cols=80  Identities=14%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCC--------CCCCCCCceeeeCCCCcccccchHHH
Q 047717          101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPD--------RRNRWDSPLFELCPYKDAIENSSAAI  172 (303)
Q Consensus       101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~--------~~~rwd~pl~~i~~~~~~~~~~~~~~  172 (303)
                      .+.++||+++|+++|.+|+.+|++..+...+.+.+.++.+.|+.-.        ....+..|.+++|++. +.......+
T Consensus       149 ~pdl~i~Ld~~~~~~~~Ri~~r~r~~E~~i~~~yl~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~iID~~~-d~~~~~~~~  227 (241)
T d2ocpa1         149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVND-DFSEEVTKQ  227 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCS-CTTTCHHHH
T ss_pred             ccceEEEecCCHHHHHHHHhcccchhhhcCCHHHHHHHHHHHHHHHHhhhhhhhHhhcCCCCEEEEECCC-chhhhHHHH
Confidence            4678999999999999999999986656677888888888875311        1222346889999764 444545667


Q ss_pred             HHHHHHHHh
Q 047717          173 LDAVAYLTK  181 (303)
Q Consensus       173 ~ei~~~l~~  181 (303)
                      ++|++.|.+
T Consensus       228 ~~i~~~I~~  236 (241)
T d2ocpa1         228 EDLMREVNT  236 (241)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777766643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.8e-11  Score=101.91  Aligned_cols=151  Identities=19%  Similarity=0.104  Sum_probs=82.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----cccc----CCCch-hhHHH----HHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----RNQS----YASMP-AEKNL----RGVLRSEVD   68 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~~~~----y~~~~-~e~~~----r~~l~~~v~   68 (303)
                      .+|+|.|++||||||+++.|++.|...  +..++.+.+......    ....    +..+. ....+    |......+.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~--g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i~   81 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAA--GHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIK   81 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhHH
Confidence            379999999999999999999999876  445665543221100    0001    11111 00000    111123456


Q ss_pred             HhcCCCCEEEEcCCCCchHHH----------HHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC-CHHHHHH
Q 047717           69 RSVSKDNIIIVDSLNSIKGYR----------YELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY-DDKIFED  137 (303)
Q Consensus        69 ~~L~~~~~VIvD~~n~~k~~R----------~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~-~~e~~~~  137 (303)
                      .+|..|.+||+|-..+ ..+-          ..+..+....-.|..+||+++|++++.+|...|..    .+ +.+.+.+
T Consensus        82 ~~l~~g~~VI~DRy~~-s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~----~~E~~~~~~r  156 (209)
T d1nn5a_          82 EKLSQGVTLVVDRYAF-SGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE----RYENGAFQER  156 (209)
T ss_dssp             HHHHTTCEEEEESCHH-HHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C----TTCSHHHHHH
T ss_pred             HHhhcccceeecchhh-hhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccccc----ccccHHHHHH
Confidence            6788999999997321 1111          11111222334578999999999999999776543    22 4566677


Q ss_pred             HHHHhcCCCCCCCCCCceeeeCCC
Q 047717          138 LVRRFEKPDRRNRWDSPLFELCPY  161 (303)
Q Consensus       138 l~~r~E~P~~~~rwd~pl~~i~~~  161 (303)
                      +.+.|+.-.. + ......+|+++
T Consensus       157 ~~~~Y~~l~~-~-~~~~~~~IDa~  178 (209)
T d1nn5a_         157 ALRCFHQLMK-D-TTLNWKMVDAS  178 (209)
T ss_dssp             HHHHHHHHTT-C-TTSCEEEEETT
T ss_pred             HHHHHHHHHH-h-CCCCEEEEECC
Confidence            7766654211 1 11235677764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.19  E-value=3.9e-12  Score=105.10  Aligned_cols=118  Identities=9%  Similarity=0.087  Sum_probs=62.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc----cccC--CCchhhHHHHHHHHHHHHHhcCCCCE
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR----NQSY--ASMPAEKNLRGVLRSEVDRSVSKDNI   76 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~----~~~y--~~~~~e~~~r~~l~~~v~~~L~~~~~   76 (303)
                      .|+|.|+|||||||+|+.|+++++..+++..-.+..........    ...+  ............+.............
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   84 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENG   84 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccccCc
Confidence            58899999999999999999999875432211000000000000    0000  00000011111111122222223356


Q ss_pred             EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      +|+|+......+...+.   .....+.++|++++|.+++.+|...|.
T Consensus        85 ~vid~~~~~~~q~~~l~---~~~~~p~~~i~L~~~~e~l~~R~~~~~  128 (189)
T d1zaka1          85 WLLDGYPRSYSQAMALE---TLEIRPDTFILLDVPDELLVERVVFDD  128 (189)
T ss_dssp             EEEESCCCSHHHHHHHH---TTTCCCSEEEEEECCHHHHHHHHTTTC
T ss_pred             EEeeccchhhHHHhhhh---hcccccchheeechhhhhhhhhccccc
Confidence            88899766554433332   223456789999999999999987654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.18  E-value=5.4e-13  Score=107.68  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=25.3

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      ||.|+|+|+|||||||+|+.|+++++..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~   31 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLK   31 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            4679999999999999999999999754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.8e-11  Score=97.27  Aligned_cols=137  Identities=13%  Similarity=0.168  Sum_probs=79.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC--------ccCCCc--cccCCCc--hhhHHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA--------SFHLDR--NQSYASM--PAEKNLRGVLRSEVDR   69 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~--------~~~~~~--~~~y~~~--~~e~~~r~~l~~~v~~   69 (303)
                      |+|+|.|+|||||||+|+.|+++++..+     +..++.        ......  .......  ......-..+...+..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g~~~-----i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~   76 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYGYTH-----LSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQ   76 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCce-----EcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcc
Confidence            6899999999999999999999997642     221110        000000  0000000  0011111122222222


Q ss_pred             ---hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC-CCCCHHHHHHHHHHhc
Q 047717           70 ---SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE-AAYDDKIFEDLVRRFE  143 (303)
Q Consensus        70 ---~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~-~~~~~e~~~~l~~r~E  143 (303)
                         .......+++|+......+...+............+++++++.+++.+|..+|..... .....+.+.+....|+
T Consensus        77 ~~~~~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~  154 (194)
T d1teva_          77 TMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYL  154 (194)
T ss_dssp             HHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHH
T ss_pred             cchhhhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHH
Confidence               1234577899998877776666665555555667889999999999999999865321 1224555555444443

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=9.8e-12  Score=100.53  Aligned_cols=153  Identities=14%  Similarity=0.131  Sum_probs=77.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI   78 (303)
                      |-|+|+|+|||||||+|+.|+++|+..+     +-.|+.   ..+..-.+.+. ...+..++..-...+...+.....||
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~f-----iD~D~~ie~~~g~~i~~~~~-~~g~~~~r~~e~~~~~~~~~~~~~vi   75 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGL-----LDTDVAIEQRTGRSIADIFA-TDGEQEFRRIEEDVVRAALADHDGVL   75 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCE-----EEHHHHHHHHHSSCHHHHHH-HHCHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCe-----Eeeccchhhhhhhhhhhhhh-hhhHHHHHHHHhhhhhhccccccccc
Confidence            5578889999999999999999997642     222211   11111111111 11122333222223334444344444


Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHH----hcCCCCCCCCC
Q 047717           79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRR----FEKPDRRNRWD  152 (303)
Q Consensus        79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r----~E~P~~~~rwd  152 (303)
                      +.+....  +....+.+ ..   ...+||+.++++++.+|+..+..++.  .....+.+..+...    |+.      | 
T Consensus        76 ~~gg~~~--~~~~~~~~-l~---~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y~~------~-  142 (165)
T d2iyva1          76 SLGGGAV--TSPGVRAA-LA---GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRR------V-  142 (165)
T ss_dssp             ECCTTGG--GSHHHHHH-HT---TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHH------H-
T ss_pred             ccccccc--cccccccc-cc---ccceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHHHHHHHHh------h-
Confidence            4432211  12222322 22   23489999999999999875543211  11123555555542    432      1 


Q ss_pred             CceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          153 SPLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       153 ~pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                       -.++|+++..+       .+++++.|++
T Consensus       143 -ad~~Idt~~~s-------~~ei~~~Ii~  163 (165)
T d2iyva1         143 -ATMRVDTNRRN-------PGAVVRHILS  163 (165)
T ss_dssp             -CSEEEECSSSC-------HHHHHHHHHT
T ss_pred             -CCEEEECCCCC-------HHHHHHHHHh
Confidence             13677764332       4667666665

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.13  E-value=9.8e-12  Score=100.33  Aligned_cols=122  Identities=20%  Similarity=0.136  Sum_probs=64.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD   80 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD   80 (303)
                      |+|+|+|||||||+|+.|++.|+..+     +-.|..   ..+..-...+. ......+|..-..........+..|++-
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~-----~d~d~~ie~~~g~~i~~~~~-~~g~~~~r~~e~~v~~~l~~~~~~v~~~   76 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVF-----LDSDFLIEQKFNQKVSEIFE-QKRENFFREQEQKMADFFSSCEKACIAT   76 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEE-----EEHHHHHHHHHTSCHHHHHH-HHCHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCE-----EecCchhhhHHhhhhhhHHH-hhhhccchhhhhhhchhhhhcccccccc
Confidence            78889999999999999999997643     222211   11110011111 1112233322222333344555666665


Q ss_pred             CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCC-CCCHHHHHHHHH
Q 047717           81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEA-AYDDKIFEDLVR  140 (303)
Q Consensus        81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~-~~~~e~~~~l~~  140 (303)
                      +.....  +.    ..+..+   .+||+++|.+++.+|+..|...... ..+...++++..
T Consensus        77 ~g~~~~--~~----~l~~~~---~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~  128 (161)
T d1viaa_          77 GGGFVN--VS----NLEKAG---FCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYN  128 (161)
T ss_dssp             CTTGGG--ST----TGGGGC---EEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHH
T ss_pred             ccchhh--HH----HHHhCC---eEEEeccchHHHHHHHccccccccccccCchHHHHHHH
Confidence            544321  11    112233   4899999999999998776532111 124445555543

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.13  E-value=5.9e-11  Score=97.82  Aligned_cols=118  Identities=11%  Similarity=0.079  Sum_probs=70.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-----cCCCccc---cC---CCchhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-----FHLDRNQ---SY---ASMPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-----~~~~~~~---~y---~~~~~e~~~r~~l~~~v~~   69 (303)
                      |.+| |.|+|||||||+|+.|+++++..+     +..++.-     .+.....   .|   ........+...+...+..
T Consensus         4 ~rii-l~G~pGSGKsT~a~~La~~~g~~~-----i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~   77 (190)
T d1ak2a1           4 VRAV-LLGPPGAGKGTQAPKLAKNFCVCH-----LATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLET   77 (190)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHHHHTCEE-----EEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTS
T ss_pred             cEEE-EECCCCCCHHHHHHHHHHHhCCeE-----EeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcc
Confidence            3444 679999999999999999997542     2222110     0000000   00   0000112222233333322


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHc-CCcEEEEEEecCHHHHHHHHHHhhhc
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAA-GIRYCVLYCDLEEDHCRKWNKERHEK  125 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~-~~~~~vI~l~~~~e~~~~R~~~R~~~  125 (303)
                       ......+|+|+......+...+....... ....++++++++.+.+.+|...|...
T Consensus        78 -~~~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~  133 (190)
T d1ak2a1          78 -PPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH  133 (190)
T ss_dssp             -GGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC
T ss_pred             -ccccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCC
Confidence             23346789999887777776666644433 45678899999999999999998763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=8e-11  Score=96.07  Aligned_cols=112  Identities=12%  Similarity=0.109  Sum_probs=61.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---------ccCCCccccCC--CchhhHHHHHHHHHHHHHhc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---------SFHLDRNQSYA--SMPAEKNLRGVLRSEVDRSV   71 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---------~~~~~~~~~y~--~~~~e~~~r~~l~~~v~~~L   71 (303)
                      -|+|.|+|||||||+|+.|+++++..+     +..++.         ..+..-.....  .......+...+...+. ..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~-----i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~-~~   75 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQ-----ISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIA-QE   75 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCE-----EEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHT-SG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCce-----echhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhc-cc
Confidence            366789999999999999999997642     222211         00000000000  00001112212222221 11


Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      .....+|+|+......+   ...+......+..+||++||.+++.+|..+|.
T Consensus        76 ~~~~g~i~~g~pr~~~~---~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~  124 (179)
T d1e4va1          76 DCRNGFLLDGFPRTIPQ---ADAMKEAGINVDYVLEFDVPDELIVDRIVKDD  124 (179)
T ss_dssp             GGGGCEEEESCCCSHHH---HHHHHHTTCCCSEEEEEECCHHHHHHHHHTTC
T ss_pred             ccccceeecccccchHH---hhhhhhccCCceEEEEeccchhhhhhhhcccc
Confidence            23357899997655433   22232333457789999999999999998764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.09  E-value=4.6e-11  Score=98.95  Aligned_cols=159  Identities=13%  Similarity=0.110  Sum_probs=82.9

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-cCCCccc---------c-CCCchhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-FHLDRNQ---------S-YASMPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-~~~~~~~---------~-y~~~~~e~~~r~~l~~~v~~   69 (303)
                      |+-|+|.|+|||||||+|+.|+++++..+     +..++.- -.+....         . .............+...+..
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~g~~~-----is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~   80 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHFELKH-----LSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKN   80 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHBCCEE-----EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHHCCeE-----EcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhh
Confidence            45677889999999999999999987542     2222110 0000000         0 00000112222233333322


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC--HHHHHHHHHHhcCCCC
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD--DKIFEDLVRRFEKPDR  147 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~--~e~~~~l~~r~E~P~~  147 (303)
                      .  ....+|+||......+...|    ...-.+..+|+++||.+++.+|+..|......++.  .+....+...|++-  
T Consensus        81 ~--~~~~~ildGfPr~~~q~~~l----~~~~~~~~vi~L~v~~~~l~~R~~~r~e~~~kr~~~y~~~~~~v~~~Y~~~--  152 (189)
T d2ak3a1          81 L--TQYNWLLDGFPRTLPQAEAL----DRAYQIDTVINLNVPFEVIKQRLTDRPETVVKRLKAYEAQTEPVLEYYRKK--  152 (189)
T ss_dssp             H--TTSCEEEESCCCSHHHHHHH----HTTCCCCEEEEEECCHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             h--hhcCcccccccchhhHHHHh----hhcCcceEEEEEeccchhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            2  33558899977665543332    22224567899999999999999877531100100  12223344455431  


Q ss_pred             CCCCCCceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717          148 RNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKK  182 (303)
Q Consensus       148 ~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~  182 (303)
                           .-+.++++. +    .++.+++|++.|-..
T Consensus       153 -----~~l~~idg~-~----~~eV~~~I~~~i~~~  177 (189)
T d2ak3a1         153 -----GVLETFSGT-E----TNKIWPHVYAFLQTK  177 (189)
T ss_dssp             -----TCEEEEECS-S----HHHHHHHHHHHHHTT
T ss_pred             -----CCEEEECCC-C----hHHHHHHHHHHHHHH
Confidence                 125566543 2    135667777776653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.8e-10  Score=96.66  Aligned_cols=75  Identities=13%  Similarity=0.060  Sum_probs=50.8

Q ss_pred             CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCC--------CCCCCCCceeeeCCCCcccccchHHH
Q 047717          101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPD--------RRNRWDSPLFELCPYKDAIENSSAAI  172 (303)
Q Consensus       101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~--------~~~rwd~pl~~i~~~~~~~~~~~~~~  172 (303)
                      .|.++||+++|+++|.+|+.+|++..+...+.+.+.++.+.|+.-.        ....+..|.++||++. ++   +...
T Consensus       152 ~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~-~i---e~v~  227 (241)
T d1p5zb_         152 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE-DF---KDKY  227 (241)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCS-CH---HHHH
T ss_pred             CCceeeeeccCHHHHHHHHHhhcchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCC-CH---HHHH
Confidence            5788999999999999999999876555667788888877765411        0112345788999753 33   2334


Q ss_pred             HHHHHHH
Q 047717          173 LDAVAYL  179 (303)
Q Consensus       173 ~ei~~~l  179 (303)
                      ++|++.|
T Consensus       228 ~~i~~~i  234 (241)
T d1p5zb_         228 ESLVEKV  234 (241)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.01  E-value=1.3e-10  Score=96.15  Aligned_cols=114  Identities=15%  Similarity=0.147  Sum_probs=69.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---------ccCCCccccC-C-CchhhHHHHHHHHHHHHHh
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---------SFHLDRNQSY-A-SMPAEKNLRGVLRSEVDRS   70 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---------~~~~~~~~~y-~-~~~~e~~~r~~l~~~v~~~   70 (303)
                      ++|+|.|+|||||||+|+.|+++++..+     +..++.         ..+..-.... . .......+...+...+...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~g~~~-----is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKYGYTH-----LSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAK   83 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTCCEE-----EEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCee-----EeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhc
Confidence            5899999999999999999999987642     222211         0000000000 0 0011122333444444444


Q ss_pred             cCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           71 VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        71 L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      ......+|+||......+.   ..+.+....+..++++.++.+++.+|...|.
T Consensus        84 ~~~~~g~ildg~pr~~~qa---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  133 (194)
T d3adka_          84 VDTSKGFLIDGYPREVKQG---EEFERKIGQPTLLLYVDAGPETMTKRLLKRG  133 (194)
T ss_dssp             TTTCSCEEEESCCSSHHHH---HHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             ccccccceeeeccchhHHH---HHHHHHhCCccchhccccchhhhHhHhhhhc
Confidence            4456779999976554433   3344556678889999999999999877654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.98  E-value=6e-10  Score=90.55  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=61.4

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-----ccCCCccc---cC---CCchhhHHHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-----SFHLDRNQ---SY---ASMPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-----~~~~~~~~---~y---~~~~~e~~~r~~l~~~v~~   69 (303)
                      |. |+|.|+|||||||+|+.|+++++..+     +..++.     ........   .|   ............+......
T Consensus         1 m~-I~i~G~pGSGKsT~a~~La~~~~~~~-----i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   74 (182)
T d1zina1           1 MN-LVLMGLPGAGKGTQAEKIVAAYGIPH-----ISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSK   74 (182)
T ss_dssp             CE-EEEECSTTSSHHHHHHHHHHHHCCCE-----EEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred             CE-EEEECCCCCCHHHHHHHHHHHHCCce-----echhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhc
Confidence            44 78999999999999999999997642     222211     00000000   00   0000011111122222211


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhh
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      . .....+|+|+..........+.......+ ....++++.++.+.+.+|...|.
T Consensus        75 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~  128 (182)
T d1zina1          75 D-DCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADD  128 (182)
T ss_dssp             G-GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTC
T ss_pred             h-hhhcCcccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhcccccc
Confidence            1 12345677776555443333333333333 45578899999999999987653

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=4.3e-09  Score=86.56  Aligned_cols=61  Identities=13%  Similarity=0.078  Sum_probs=44.4

Q ss_pred             CCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCC--CCCCCCCceeeeCC
Q 047717          100 GIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPD--RRNRWDSPLFELCP  160 (303)
Q Consensus       100 ~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~--~~~rwd~pl~~i~~  160 (303)
                      ..+..+||+++|+++|.+|+.+|++..+...+.+.+..+...|+.--  .....+.|.+++++
T Consensus       134 ~~pdl~i~Ld~~~~~~~~Ri~~R~r~~E~~i~~~yl~~l~~~Y~~~~~~~~~~~~~~v~~iD~  196 (197)
T d2vp4a1         134 VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA  196 (197)
T ss_dssp             CCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEEC
T ss_pred             cccchhheeecCHHHHHHHHHHhCchhhhcCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence            46889999999999999999999876555667788887877776411  12223556777764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=2.1e-09  Score=90.39  Aligned_cols=171  Identities=16%  Similarity=0.127  Sum_probs=80.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC---------CccccCCCc-hhhHHH----HHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL---------DRNQSYASM-PAEKNL----RGVLRSEV   67 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~---------~~~~~y~~~-~~e~~~----r~~l~~~v   67 (303)
                      .+|+|.|+.||||||+++.|++.|...     .+.+.....+.         .....+.-. ..+..+    |..+...+
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~~~-----~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i   78 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQPN-----CKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKI   78 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTTTS-----EEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhC-----CEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999653     22222211110         000011111 111110    11122235


Q ss_pred             HHhcCCCCEEEEcCCCCchHHHH------------HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC-CHHH
Q 047717           68 DRSVSKDNIIIVDSLNSIKGYRY------------ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY-DDKI  134 (303)
Q Consensus        68 ~~~L~~~~~VIvD~~n~~k~~R~------------~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~-~~e~  134 (303)
                      ...+..|.+||+|-.. ...+-|            .+.......-.|..+||+++|++.+.+|...|..   +.+ ..+.
T Consensus        79 ~~~l~~g~~VI~DRy~-~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~---~~~e~~~~  154 (214)
T d1tmka_          79 KKDLLEGKNIVMDRYV-YSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD---ERYETVKF  154 (214)
T ss_dssp             HHHHHTTCEEEEESCH-HHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCS---STTCCHHH
T ss_pred             HHHHhcCCeeEecCcc-ccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccch---hhhhhHHH
Confidence            5667789999999632 111211            1111222233678999999999988887655543   223 3455


Q ss_pred             HHHHHHHhcCCCC--CCCCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          135 FEDLVRRFEKPDR--RNRWDSPLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       135 ~~~l~~r~E~P~~--~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      ++++.+.|..-..  ..+.+....+++.++..++.....+.++++.+++
T Consensus       155 ~~~v~~~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l~  203 (214)
T d1tmka_         155 QEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLS  203 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            5666555532100  0123345677776544433323334444444443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=2.7e-10  Score=90.06  Aligned_cols=27  Identities=30%  Similarity=0.341  Sum_probs=24.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      ..|+|+|+|||||||+|+.|+++|+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~   29 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNME   29 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            358999999999999999999998754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.89  E-value=1.2e-09  Score=89.07  Aligned_cols=110  Identities=17%  Similarity=0.165  Sum_probs=64.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---c--C------C---CccccCCCchhhHHHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---F--H------L---DRNQSYASMPAEKNLRGVLRSEVDR   69 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~--~------~---~~~~~y~~~~~e~~~r~~l~~~v~~   69 (303)
                      |+|.|+|||||||+|+.|+++++..+     +..++.-   .  .      +   ...+.+..   .......+...+..
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~~~-----is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~---d~~~~~~~~~~~~~   74 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGTPH-----ISTGDMFRAAIQEGTELGVKAKSFMDQGALVP---DEVTIGIVRERLSK   74 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCE-----EEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCce-----eeHHHHHHHhhhcCCchHHHHHHHHHcCCccc---CcchhHHHHHhhcc
Confidence            67889999999999999999997642     2222110   0  0      0   00000110   11111122222222


Q ss_pred             hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHh
Q 047717           70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R  122 (303)
                       ......+|+|+..........+.......+. .+++++++++.+.+.+|...+
T Consensus        75 -~~~~~~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~  127 (182)
T d1s3ga1          75 -SDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD  127 (182)
T ss_dssp             -STTSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT
T ss_pred             -cccccceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc
Confidence             2345678999987776665555554444443 467888999999999987543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.6e-09  Score=86.72  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=63.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCC---ccEEEecCCccCCC---------ccc--cCCCc--hhhHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAK---ETVRIIDEASFHLD---------RNQ--SYASM--PAEKNLRGVLRSE   66 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~---~~v~~~~~~~~~~~---------~~~--~y~~~--~~e~~~r~~l~~~   66 (303)
                      +|.|+|.+||||||+|+.|++.|+...+.   ..+.++..++++..         ...  .|...  .....+...+...
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   83 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEI   83 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccchhhhhhhhhcccccCCcHHHHHHHHHhhhhhh
Confidence            56799999999999999999999865432   23344443333210         001  12111  1112222223222


Q ss_pred             HHH--------------------hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           67 VDR--------------------SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        67 v~~--------------------~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ...                    .+....++|+++....-.  ..+.   ...   ...||+++|.+++++|..+|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~--~~l~---~~~---D~~i~v~~~~~~~~~R~~~Rd~  153 (213)
T d1uj2a_          84 TEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVR---DLF---QMKLFVDTDADTRLSRRVLRDI  153 (213)
T ss_dssp             HTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHH---HHC---SEEEEEECCHHHHHHHHHHHHH
T ss_pred             hcCCcccccccccccccccCceEEecccceEEecchhhhcc--HHHH---hhh---heeeeecCCHHHHHHHHHHHHH
Confidence            110                    113456889998764211  1111   222   3589999999999999888854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.79  E-value=4.2e-09  Score=86.02  Aligned_cols=29  Identities=31%  Similarity=0.406  Sum_probs=25.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAK   31 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~   31 (303)
                      +|.|+|++||||||+|+.|++.++..++.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~~~~   52 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQGIS   52 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccccc
Confidence            57799999999999999999999876433

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.77  E-value=2.6e-08  Score=83.25  Aligned_cols=27  Identities=37%  Similarity=0.353  Sum_probs=24.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      +|+|.|+|||||||+|+.|+++|+..+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~   31 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTY   31 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            577889999999999999999998753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.75  E-value=2.1e-08  Score=89.37  Aligned_cols=42  Identities=17%  Similarity=0.198  Sum_probs=35.4

Q ss_pred             CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717          101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE  143 (303)
Q Consensus       101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E  143 (303)
                      .+..+||+++|+++|.+|+.+|++.+ +..+.+.++.+.+.|.
T Consensus       154 ~pdliIyLd~~pe~~l~RI~~RgR~~-E~idl~YL~~L~~~Y~  195 (329)
T d1e2ka_         154 PGTNIVLGALPEDRHIDRLAKRQRPG-ERLDLAMLAAIRRVYG  195 (329)
T ss_dssp             TTCEEEEEECCHHHHHHHHHHSCCTT-CCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCCc-CCCCHHHHHHHHHHHH
Confidence            46889999999999999999999876 4688888877777764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.2e-08  Score=83.47  Aligned_cols=92  Identities=10%  Similarity=-0.006  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCC
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWD  152 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd  152 (303)
                      ....++++...+....         .......+|+++||.++..+|..+|..     ++.+.+........ |.. .+-.
T Consensus       105 ~~~~~~~e~~ll~e~~---------~~~~~~~iI~V~a~~e~r~~R~~~R~~-----~~~~~~~~~~~~Q~-~~~-~k~~  168 (208)
T d1vhta_         105 TSPYVLWVVPLLVENS---------LYKKANRVLVVDVSPETQLKRTMQRDD-----VTREHVEQILAAQA-TRE-ARLA  168 (208)
T ss_dssp             CSSEEEEECTTTTTTT---------GGGGCSEEEEEECCHHHHHHHHHHHHT-----CCHHHHHHHHHHSC-CHH-HHHH
T ss_pred             hcCCcceeeeeccccc---------ccccCCEEEEEeCCHHHHHHHHHHhhh-----hhHHHHHHHHHhCC-CHH-HHHH
Confidence            4567888876554321         111234589999999999999999953     45655554444321 111 0001


Q ss_pred             CceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717          153 SPLFELCPYKDAIENSSAAILDAVAYLTK  181 (303)
Q Consensus       153 ~pl~~i~~~~~~~~~~~~~~~ei~~~l~~  181 (303)
                      ..-++|+.+ .+.+.-...++++++.+++
T Consensus       169 ~aD~vI~N~-~~le~l~~~v~~l~~~~l~  196 (208)
T d1vhta_         169 VADDVIDNN-GAPDAIASDVARLHAHYLQ  196 (208)
T ss_dssp             HCSEEEECS-SCTTSHHHHHHHHHHHHHH
T ss_pred             hCCEEEECC-CCHHHHHHHHHHHHHHHHH
Confidence            124666543 2333333445666666554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.70  E-value=3.8e-08  Score=80.08  Aligned_cols=116  Identities=13%  Similarity=0.165  Sum_probs=60.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHH---H-----------------HH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKN---L-----------------RG   61 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~---~-----------------r~   61 (303)
                      .+|+|+|++||||||+++.|.+.+........+.. .....+-..+..|..-..+..   .                 .+
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tT-R~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g   81 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATT-RAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG   81 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEES-SCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeec-cCCCccccCCcceeeccchhhhhhhcccccchhhhcccCccccc
Confidence            37999999999999999999988753211111111 000000001111110000000   0                 00


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           62 VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        62 ~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .....+...+..|..+++|..  ..+.    ..+-.....++.++.+.++.+++.+|+.+|+.
T Consensus        82 ~~~~~~~~~~~~g~~~i~~~~--~~g~----~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~  138 (182)
T d1znwa1          82 TLAQPVRAAAATGVPVLIEVD--LAGA----RAIKKTMPEAVTVFLAPPSWQDLQARLIGRGT  138 (182)
T ss_dssp             EEHHHHHHHHHHTCCEEEECC--HHHH----HHHHHHCTTSEEEEEECSCHHHHHHHHHTTSC
T ss_pred             cccchhhhhhhcCCccccccc--cchh----hhhhhcCcceeEEeeecccHHHHHHHhhhcCc
Confidence            112234455566788888873  2332    22222333445455556778999999999975

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.67  E-value=3e-08  Score=85.02  Aligned_cols=116  Identities=15%  Similarity=0.210  Sum_probs=75.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCC--------Cc--hhhHHHHHHHHHHHHHhcC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYA--------SM--PAEKNLRGVLRSEVDRSVS   72 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~--------~~--~~e~~~r~~l~~~v~~~L~   72 (303)
                      .|+|.|+|||||||+|+.|+..++..     .+.++.+.+.-.. ..|.        ..  .................+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~~~-----~~~i~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQGN-----VIVIDNDTFKQQH-PNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD  107 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTTTC-----CEEECTHHHHTTS-TTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhcc-----eEEEecHHHHHHh-ccCcccchhhhHHHHHHHHhhccchHHHHHHHHHh
Confidence            58999999999999999999998642     3445432221000 0000        00  0011111122223334455


Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .+...+.|.++........+.+.+...+....+.++.++.+.+..|+..|..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R~~  159 (273)
T d1gvnb_         108 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYE  159 (273)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             hCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcCCc
Confidence            5667788988877777777778888888888888999999999999887753

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.66  E-value=1e-07  Score=84.98  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=35.0

Q ss_pred             CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717          101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE  143 (303)
Q Consensus       101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E  143 (303)
                      .+..+||+++|++++.+|+.+|++.++ .++.+.++.+...|.
T Consensus       156 ~pd~iIyLd~~pe~~l~RI~~RgR~~E-~id~~YL~~L~~~Y~  197 (333)
T d1p6xa_         156 QGGNIVVTTLNVEEHIRRLRTRARIGE-QIDITLIATLRNVYF  197 (333)
T ss_dssp             TTEEEEEEECCHHHHHHHHHHHSCTTC-CCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCCcC-CCCHHHHHHHHHHHH
Confidence            357899999999999999999998764 588888777777665

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=2.2e-07  Score=77.25  Aligned_cols=117  Identities=11%  Similarity=0.108  Sum_probs=62.5

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec-CCccCCCccccCCCchhh------------------HHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID-EASFHLDRNQSYASMPAE------------------KNLRGV   62 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~-~~~~~~~~~~~y~~~~~e------------------~~~r~~   62 (303)
                      .+|+|+|++||||||+.+.|.+.+....+...+-+.. ...-+-..+..|..-..+                  ..+.+.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YGt   82 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGT   82 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceecc
Confidence            4899999999999999999998865211100000000 000000000111100000                  001112


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           63 LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        63 l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ....+...+..|.+||+|..  ..|.    ..+-+....++.++++..+.+++.+|+.+|+.
T Consensus        83 ~~~~v~~~~~~g~~~ildid--~~g~----~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~  138 (205)
T d1s96a_          83 SREAIEQVLATGVDVFLDID--WQGA----QQIRQKMPHARSIFILPPSKIELDRRLRGRGQ  138 (205)
T ss_dssp             EHHHHHHHHTTTCEEEEECC--HHHH----HHHHHHCTTCEEEEEECSSHHHHHHHHHTTSC
T ss_pred             ccchHHHHHhcCCceeecCc--HHHH----HHHHhhhcccceeeeeccchHHHHHHHHhcCC
Confidence            23456778889999999973  3332    22222334444455566778889999999965

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.62  E-value=8.4e-08  Score=85.56  Aligned_cols=138  Identities=14%  Similarity=0.125  Sum_probs=75.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-----cC-C-CccccCCCchh---------h--HH---HH-
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-----FH-L-DRNQSYASMPA---------E--KN---LR-   60 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-----~~-~-~~~~~y~~~~~---------e--~~---~r-   60 (303)
                      .|+|.|.-||||||+++.|++++...  +..+.++.+..     .+ . .-...|.+...         .  ..   .+ 
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~--g~~v~~~~EP~~~W~~~~g~~~l~~iy~~~~r~~~g~~~~~~~~~~~~~~Q~   84 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAIT--PNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQS   84 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTS--GGGEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhc--CCceEEEeCchHhhhccCCCcHHHHHHHhHHhccccccchhhHHHHHHHHHH
Confidence            48999999999999999999998764  34666666531     00 0 00112221100         0  00   00 


Q ss_pred             ------HHHHHHHHHhc------------CCCCEEEEcCCCCch-----HHHHH--------HHHHHHH---cCCcEEEE
Q 047717           61 ------GVLRSEVDRSV------------SKDNIIIVDSLNSIK-----GYRYE--------LWCLARA---AGIRYCVL  106 (303)
Q Consensus        61 ------~~l~~~v~~~L------------~~~~~VIvD~~n~~k-----~~R~~--------l~~~ak~---~~~~~~vI  106 (303)
                            ..+...+.+.+            ..+.+||+|-..+..     ..++.        +..+...   .-.+..+|
T Consensus        85 ~f~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~VI~DR~~~Ss~~~F~~~~~~~G~i~~~~~~~l~~~~~~~~~pdliI  164 (331)
T d1osna_          85 LFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTNLV  164 (331)
T ss_dssp             HTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHHHHHTTCCCCCSCCEEE
T ss_pred             HHhhhHHHHHHHHHHHHhhhhhcccccccCCCCEEEEECCHhHHHHHHHHHhhhcCCCCHHHHHHHHHHhcccCCCCEEE
Confidence                  01222232222            235689999643221     11211        1111111   12367899


Q ss_pred             EEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717          107 YCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE  143 (303)
Q Consensus       107 ~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E  143 (303)
                      |+++|+++|.+|+.+|++.+ +..+.+.++.+...|.
T Consensus       165 yLd~~pe~~l~RIk~RgR~~-E~i~~eYL~~L~~~Y~  200 (331)
T d1osna_         165 VCTVSLPSHLSRVSKRARPG-ETVNLPFVMVLRNVYI  200 (331)
T ss_dssp             EEECCHHHHHHHCC-------CCCCHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHHH
Confidence            99999999999999999876 4678888877777663

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.61  E-value=4.3e-08  Score=78.55  Aligned_cols=28  Identities=32%  Similarity=0.405  Sum_probs=25.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +..|+|+|+|||||||+|+.|+++++..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~   34 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTT   34 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3579999999999999999999998753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=1.7e-07  Score=76.59  Aligned_cols=114  Identities=17%  Similarity=0.122  Sum_probs=60.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec-CCccCCCccccCCCchhhHH------------------HHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID-EASFHLDRNQSYASMPAEKN------------------LRGVL   63 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~-~~~~~~~~~~~y~~~~~e~~------------------~r~~l   63 (303)
                      .|+|+|++||||||+++.|++.+.... ...+.+.. ....+-..+..|..-..+..                  +.+..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~~~-~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~   81 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPDSF-GFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTE-EECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCcce-eEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecc
Confidence            488999999999999999999875321 00011100 00000000001100000000                  00011


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHH-cC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717           64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARA-AG-IRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~-~~-~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      ...+...+..|..+|+|..  ..+.    . ..+. .+ .+..++++..+.+++.+|+.+|+.
T Consensus        82 ~~~i~~~~~~g~~~i~~~~--~~~~----~-~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~  137 (186)
T d1gkya_          82 VASVKQVSKSGKTCILDID--MQGV----K-SVKAIPELNARFLFIAPPSVEDLKKRLEGRGT  137 (186)
T ss_dssp             HHHHHHHHHHTSEEEEECC--HHHH----H-HHHTCGGGCCEEEEEECSCHHHHHHHHHHHSC
T ss_pred             hhhHHHHhcCCCeEEecch--HHHH----H-HHHHhhcccceEEEecCCcHHHHHHHHHhhcc
Confidence            2344555667889999973  2221    2 2233 23 245566678889999999999975

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1e-07  Score=84.10  Aligned_cols=119  Identities=20%  Similarity=0.263  Sum_probs=65.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc--------ccCC--CchhhHHHHHHHHHHHHH---
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN--------QSYA--SMPAEKNLRGVLRSEVDR---   69 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~--------~~y~--~~~~e~~~r~~l~~~v~~---   69 (303)
                      +|.|+|.+||||||+|+.|++.|.....+..+.+++.+++.....        ..|.  ++.+-..+...+......   
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D~~~L~~~L~~lk~g~~~  161 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPN  161 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSC
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHHHhcCCccCCchHhhhHHHHHHHHHHHHcCCCc
Confidence            788999999999999999999997533345566666555543110        0111  111122222223221100   


Q ss_pred             -------------------hcCCCCEEEEcCCCCchHHHHHH----HHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           70 -------------------SVSKDNIIIVDSLNSIKGYRYEL----WCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        70 -------------------~L~~~~~VIvD~~n~~k~~R~~l----~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                                         .....++||++|.+....-+..-    +...  ...-...||++|+.+++.+|...|.
T Consensus       162 v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l--~d~~D~~Ifvda~~~~~~~r~i~R~  236 (308)
T d1sq5a_         162 VTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFV--SDFVDFSIYVDAPEDLLQTWYINRF  236 (308)
T ss_dssp             EEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCG--GGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred             ceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchh--hhhhheeeeecCCHHHHHHHHHHHH
Confidence                               01233699999987532100000    0000  0112369999999999998887764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.2e-07  Score=77.69  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=22.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|+|++||||||+++.|++.++.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            789999999999999999998864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.55  E-value=1.4e-07  Score=77.03  Aligned_cols=42  Identities=7%  Similarity=-0.048  Sum_probs=29.1

Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH  123 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~  123 (303)
                      ....+|+|+.......         ....-..+||++||.++..+|..+|.
T Consensus       100 ~~~~vi~e~~~~~~~~---------~~~~~d~vI~v~a~~e~r~~Rl~~R~  141 (191)
T d1uf9a_         100 EAPLVFLEIPLLFEKG---------WEGRLHGTLLVAAPLEERVRRVMARS  141 (191)
T ss_dssp             CCSEEEEECTTTTTTT---------CGGGSSEEEEECCCHHHHHHHHHTTT
T ss_pred             ccceEEEEeecccccc---------ccccceeEEEEecchhhHHHHHHhcc
Confidence            4578889986543221         01112358999999999999999884

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.55  E-value=1.2e-07  Score=78.66  Aligned_cols=54  Identities=7%  Similarity=0.022  Sum_probs=33.2

Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVR  140 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~  140 (303)
                      ....||+|+..+.....         ...-..+|+++||.++..+|..+|.     .++.+.+.....
T Consensus       104 ~~~~vv~e~~ll~e~~~---------~~~~d~ii~v~~~~~~r~~R~~~R~-----~~s~e~~~~~~~  157 (205)
T d1jjva_         104 TAPYTLFVVPLLIENKL---------TALCDRILVVDVSPQTQLARSAQRD-----NNNFEQIQRIMN  157 (205)
T ss_dssp             CSSEEEEECTTTTTTTC---------GGGCSEEEEEECCHHHHHHHHC----------CHHHHHHHHH
T ss_pred             cCCeEEEEeccccccch---------hhhhhheeeecchHHHHHHHHHhcC-----CchHHHHHHHHH
Confidence            45688899876543211         1112358999999999999999884     346666665544

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.49  E-value=4.9e-08  Score=85.23  Aligned_cols=40  Identities=18%  Similarity=0.378  Sum_probs=28.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH   43 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~   43 (303)
                      |+|.|+|.+||||||+|+.|++.|+..+  ..+.+++.++++
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~--v~~~iI~~Dsfy   44 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREG--VKAVSIEGDAFH   44 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHT--CCEEEEEGGGGB
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcC--CCeEEEeCCCCC
Confidence            7999999999999999999999998753  334444444443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=9.3e-08  Score=75.81  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=26.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      +|+|+|+|+|||||||+++.|++++...+
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g   30 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARG   30 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            48999999999999999999999998764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.5e-07  Score=78.08  Aligned_cols=28  Identities=32%  Similarity=0.399  Sum_probs=26.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESE   29 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~   29 (303)
                      |+|+|.|+|||||||+|+.|+++|+..+
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~gl~~   31 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQWHL   31 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            7999999999999999999999998654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.15  E-value=7.7e-07  Score=70.78  Aligned_cols=31  Identities=19%  Similarity=0.162  Sum_probs=28.0

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAK   31 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~   31 (303)
                      |.+|.|+|++||||||++..|..+|...+..
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~   31 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWR   31 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCe
Confidence            8999999999999999999999999876433

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=2.3e-06  Score=64.28  Aligned_cols=36  Identities=11%  Similarity=0.143  Sum_probs=28.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      .|+++|++||||||+|++|...|.+..-+..+.+++
T Consensus         8 ~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~   43 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFE   43 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEec
Confidence            589999999999999999999987632244566554

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.1e-05  Score=61.57  Aligned_cols=26  Identities=15%  Similarity=0.250  Sum_probs=22.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+|+|+|++||||||+.+.|.+.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCc
Confidence            37999999999999999999987643

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.83  E-value=0.0001  Score=58.07  Aligned_cols=25  Identities=32%  Similarity=0.559  Sum_probs=23.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|+|+|||||||+++.|+..+...
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            8999999999999999999988753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.76  E-value=4.5e-05  Score=63.36  Aligned_cols=100  Identities=14%  Similarity=0.107  Sum_probs=52.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHH---HhcCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVD---RSVSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~---~~L~~~~~VI   78 (303)
                      |.++|+|+||+||||+|+.|++.+.....+.+++.++..           +...-..++........   .......+++
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~iil  114 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS-----------DERGINVIREKVKEFARTKPIGGASFKIIF  114 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT-----------CHHHHHTTHHHHHHHHHSCCGGGCSCEEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecC-----------cccchhHHHHHHHHHHhhhhccCCCceEEe
Confidence            568899999999999999999988653223334333311           00011111211111111   1123456777


Q ss_pred             EcCCC-CchHHHHHHHHHHHHcCCcEEEEEEecCH
Q 047717           79 VDSLN-SIKGYRYELWCLARAAGIRYCVLYCDLEE  112 (303)
Q Consensus        79 vD~~n-~~k~~R~~l~~~ak~~~~~~~vI~l~~~~  112 (303)
                      +|... ........+.........+..+|.+....
T Consensus       115 ide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~  149 (231)
T d1iqpa2         115 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS  149 (231)
T ss_dssp             EETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred             ehhhhhcchhHHHHHhhhcccCCcceEEEeccCCh
Confidence            78643 33344444555555555566666554443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.75  E-value=0.00015  Score=59.85  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      ++|.|+||||||.++++++..+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~   63 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKR   63 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccC
Confidence            6899999999999999999888654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.74  E-value=0.00011  Score=60.44  Aligned_cols=103  Identities=21%  Similarity=0.165  Sum_probs=56.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC---------------CccccCCCchhhHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL---------------DRNQSYASMPAEKNLRGVLRSE   66 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~---------------~~~~~y~~~~~e~~~r~~l~~~   66 (303)
                      .+|+|+|++|+||||.+.+||.++...  +..+.+++-+.+..               .-...+.........+   ...
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~--g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~---~~~   85 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR---RVE   85 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHH---HHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHH---HHH
Confidence            378999999999999999999998765  45566655443321               0000111111111111   001


Q ss_pred             HHHhcCCCCEEEEcCCC---CchHHHHHHHHHHHHcCCcEEEEEEe
Q 047717           67 VDRSVSKDNIIIVDSLN---SIKGYRYELWCLARAAGIRYCVLYCD  109 (303)
Q Consensus        67 v~~~L~~~~~VIvD~~n---~~k~~R~~l~~~ak~~~~~~~vI~l~  109 (303)
                      ....+...+.|++|..-   .......++..+.+........+.++
T Consensus        86 ~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~  131 (207)
T d1ls1a2          86 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD  131 (207)
T ss_dssp             HHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             HHHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEec
Confidence            11233456889999643   23345666666666555444444444

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=3.6e-05  Score=65.65  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=23.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      =|+|.|+||+|||++++.++..++..
T Consensus        40 giLL~GppGtGKT~l~~ala~~~~~~   65 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANETGAF   65 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred             eeEEecCCCCCchHHHHHHHHHhCCe
Confidence            37899999999999999999988654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.4e-05  Score=63.23  Aligned_cols=26  Identities=31%  Similarity=0.451  Sum_probs=23.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .|+|+|+|||||||+++++++.+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            58999999999999999999998654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=5.1e-05  Score=62.80  Aligned_cols=102  Identities=18%  Similarity=0.271  Sum_probs=52.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc----CCCCEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV----SKDNII   77 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L----~~~~~V   77 (303)
                      |-++|.|+||+||||+|+.|++.+........+..++..           +......++..+...+....    .+..++
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~-----------~~~~~~~i~~~~~~~~~~~~~~~~~~~kvi  105 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS-----------DDRGIDVVRNQIKHFAQKKLHLPPGKHKIV  105 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT-----------SCCSHHHHHTHHHHHHHBCCCCCTTCCEEE
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhcccccccccccccc-----------ccCCceehhhHHHHHHHhhccCCCcceEEE
Confidence            447899999999999999999988754322333333211           11111222222222222211    234689


Q ss_pred             EEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEecCHHH
Q 047717           78 IVDSLNSI-KGYRYELWCLARAAGIRYCVLYCDLEEDH  114 (303)
Q Consensus        78 IvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~~~~e~  114 (303)
                      |+|..... ......+.............+.+..+.+.
T Consensus       106 iiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~  143 (224)
T d1sxjb2         106 ILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNK  143 (224)
T ss_dssp             EEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred             EEecccccchhHHHHHhhhccccccceeeeeccCchhh
Confidence            99975433 23333333333444445555555544443

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.66  E-value=1.3e-05  Score=67.23  Aligned_cols=28  Identities=29%  Similarity=0.402  Sum_probs=25.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |.+|.|+|.+||||||+|+.|++.++..
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g~~   28 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYSAV   28 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCe
Confidence            8999999999999999999999887654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.61  E-value=0.00022  Score=58.77  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=23.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +|+|+|++|+||||.+.+||.++...  +..+-++.-
T Consensus        14 vi~lvGptGvGKTTTiAKLA~~~~~~--g~kV~lit~   48 (211)
T d1j8yf2          14 VIMLVGVQGTGKATTAGKLAYFYKKK--GFKVGLVGA   48 (211)
T ss_dssp             EEEEECSCCC----HHHHHHHHHHHT--TCCEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCceEEEEe
Confidence            78899999999999999999988765  345555443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.58  E-value=8.9e-05  Score=62.68  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=22.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      |+|.|+||+|||++|+.|+..++..
T Consensus        43 vLL~GppGtGKT~la~alA~~~~~~   67 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEESNFP   67 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred             EEEECcCCCCHHHHHHHHhhccccc
Confidence            8899999999999999999998653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.56  E-value=1.5e-05  Score=66.63  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=23.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |-++|+|+||+||||+|+.|+++++.
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCC
Confidence            34789999999999999999999875

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00041  Score=57.08  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS   41 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~   41 (303)
                      +|+|+|++||||||.+.+||.++...  +..|.++.-+.
T Consensus        11 vi~lvGptGvGKTTTiAKLA~~~~~~--g~kV~lit~Dt   47 (211)
T d2qy9a2          11 VILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGDT   47 (211)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEECCCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEeccc
Confidence            68899999999999999999988754  45666665443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.45  E-value=0.00029  Score=57.87  Aligned_cols=37  Identities=14%  Similarity=0.235  Sum_probs=29.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS   41 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~   41 (303)
                      +|+|+|++||||||.+.+|+.++...  +..|.++.-+.
T Consensus         8 vi~lvGptGvGKTTTiaKLA~~~~~~--g~kV~lit~Dt   44 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDT   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEecc
Confidence            68999999999999999999988754  45666665443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=3.9e-05  Score=66.37  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=27.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcccc-CCccEEEecCCc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESE-AKETVRIIDEAS   41 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~~~~~~~   41 (303)
                      +|.|+|.+||||||+|..|.+.+...+ ....+..++-++
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Dd   68 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD   68 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCC
Confidence            677999999999999999988875532 123455555333

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.00014  Score=60.03  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=23.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |-++|+|+||+||||+|+.|++.+..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHhhc
Confidence            44789999999999999999998764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=3.8e-05  Score=64.44  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=23.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +.++|.|+||+||||+|+.|+++++.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~~   78 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELGY   78 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999864

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=0.00025  Score=58.50  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=27.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +|+|+|++||||||-+.+||.++...  +..|.++.
T Consensus        13 vi~lvGptGvGKTTTiAKLAa~~~~~--~~kV~lit   46 (213)
T d1vmaa2          13 VIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAA   46 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCceEEEe
Confidence            78999999999999999999988655  34555544

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.36  E-value=4e-05  Score=64.00  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=23.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |-++|.|+||+||||+|+.+++.++.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~   61 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGV   61 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34789999999999999999998864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.33  E-value=0.0005  Score=55.12  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=19.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La   22 (303)
                      |.|+|.|.|||||||+.+.|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            579999999999999999986

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.29  E-value=0.00012  Score=60.54  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=23.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+|+|+|++||||||+.+.|.+++..
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~   26 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLED   26 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhh
Confidence            37999999999999999999988754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00045  Score=58.57  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=26.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      -|+|.|+||+|||++|+.|++.++.     +++.++-
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~~~~-----~~~~i~~   78 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGEAKV-----PFFTISG   78 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTC-----CEEEECS
T ss_pred             eEEeeCCCCCCccHHHHHHHHHcCC-----CEEEEEh
Confidence            4889999999999999999999864     4566553

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.0002  Score=61.13  Aligned_cols=26  Identities=27%  Similarity=0.508  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      -|+|.|+||+|||++++.|+..++..
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~~~~   68 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANECQAN   68 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHTTCE
T ss_pred             eEEEECCCCCcchhHHHHHHHHhCCc
Confidence            48899999999999999999998754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=9.9e-05  Score=64.48  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=22.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|+||||+|||.+|++|++.++.
T Consensus        52 iLl~GPpG~GKT~lAkalA~~~~~   75 (309)
T d1ofha_          52 ILMIGPTGVGKTEIARRLAKLANA   75 (309)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhhcccc
Confidence            789999999999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.08  E-value=0.00017  Score=60.93  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=25.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      -|+|.|+||+|||++|+.|+..++.     .++.++
T Consensus        44 giLl~GppGtGKT~la~aia~~~~~-----~~~~i~   74 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEARV-----PFITAS   74 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEE
T ss_pred             eEEEecCCCCChhHHHHHHHHHcCC-----CEEEEE
Confidence            3899999999999999999998764     355554

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.00012  Score=60.67  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=22.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |.++|+|+||+||||+++.|++.+.
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHHc
Confidence            3478999999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.06  E-value=0.00024  Score=62.41  Aligned_cols=38  Identities=29%  Similarity=0.353  Sum_probs=30.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      ..|-|+|+|||||||+...|..++...+....|+.+|.
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDp   89 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP   89 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccc
Confidence            46999999999999999999998876554555666553

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00024  Score=62.51  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +.|.|+|+|||||||+...|..++...+....++-+|
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavD   91 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   91 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCC
Confidence            4799999999999999999999887654334445444

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.03  E-value=0.0043  Score=44.80  Aligned_cols=104  Identities=22%  Similarity=0.272  Sum_probs=67.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS   81 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~   81 (303)
                      .||++.|+.|+=|||+|..|.+.+...     ++--+  ++..      ..+..|     .++..+.. |...+.||+|-
T Consensus         1 tliilegpdccfkstvaaklskelkyp-----iikgs--sfel------aksgne-----klfehfnk-ladednviidr   61 (164)
T d2axpa1           1 TLIILEGPDCCFKSTVAAKLSKELKYP-----IIKGS--SFEL------AKSGNE-----KLFEHFNK-LADEDNVIIDR   61 (164)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHTCC-----EEECC--CHHH------HHHCHH-----HHHHHHHH-HTTCCSEEEES
T ss_pred             CeEEEeCCchhhHHHHHHHHHhhhcCc-----eecCc--hhhh------hhccCH-----HHHHHHHh-hccccceeeeh
Confidence            379999999999999999999998653     22211  1111      001122     33333433 44567788887


Q ss_pred             CCCc-----hHH-------HHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717           82 LNSI-----KGY-------RYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE  124 (303)
Q Consensus        82 ~n~~-----k~~-------R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~  124 (303)
                      .-|.     +.|       -.+++-+-........+||+.+++.+..+|+.-|+.
T Consensus        62 fvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgd  116 (164)
T d2axpa1          62 FVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD  116 (164)
T ss_dssp             CHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTC
T ss_pred             hhhhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccc
Confidence            4321     111       234555555566778899999999999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.00  E-value=0.00019  Score=60.01  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=23.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +-++|.|+||+||||+++.|++.+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhc
Confidence            36899999999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.00014  Score=60.75  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |-++|.|+||+||||+|+.+++.+.
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhhc
Confidence            4478999999999999999999874

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.93  E-value=0.00015  Score=61.00  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=22.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +++|+|+||+||||+++.+++.+..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHh
Confidence            4567899999999999999999864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.0015  Score=51.08  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|+|.|||||||+.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.0063  Score=54.54  Aligned_cols=19  Identities=32%  Similarity=0.475  Sum_probs=18.0

Q ss_pred             EEEEccCCCCHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La   22 (303)
                      |+|.|.||+||||+.+.|.
T Consensus        59 Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999999985

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00026  Score=58.71  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.6

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      .|+++|+|+.||||||+.+.|.+.
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            489999999999999999988764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.0022  Score=54.32  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=29.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      ++.|.|+|||||||+|-+++......  +..++++|.+
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~q~~--g~~~vyidtE   91 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE   91 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHcC--CCEEEEEccc
Confidence            78999999999999999999887665  4566777754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.69  E-value=0.0028  Score=55.22  Aligned_cols=72  Identities=21%  Similarity=0.374  Sum_probs=41.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL   82 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~   82 (303)
                      .+++.|+||+|||.+|+.|+..++..   ...+.++...+.    ..|.. ..++.++..+. .+.    +..++++|-.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~---~~~~~~~~~~~~----~~~~G-~~e~~~~~~f~-~a~----~~~ilf~DEi  191 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGK---DKYATVRFGEPL----SGYNT-DFNVFVDDIAR-AML----QHRVIVIDSL  191 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTT---SCCEEEEBSCSS----TTCBC-CHHHHHHHHHH-HHH----HCSEEEEECC
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCC---CCeEEEEhhHhh----hcccc-hHHHHHHHHHH-HHh----hccEEEeehh
Confidence            45678999999999999999998742   112233321111    12322 23566674444 332    2458888876


Q ss_pred             CCchH
Q 047717           83 NSIKG   87 (303)
Q Consensus        83 n~~k~   87 (303)
                      ..+-+
T Consensus       192 d~~~~  196 (321)
T d1w44a_         192 KNVIG  196 (321)
T ss_dssp             TTTC-
T ss_pred             hhhcc
Confidence            65544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0005  Score=54.93  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+|||||||+|.+++....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999987654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.55  E-value=0.0014  Score=59.78  Aligned_cols=50  Identities=20%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR   60 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r   60 (303)
                      -|+|.||+|||||-+|+.||+.++.+     .+..|--.|.   ..+|-....+..++
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VP-----Fv~~daT~fT---eaGYvG~DVesii~  100 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAP-----FIKVEATKFT---EVGYVGKEVDSIIR  100 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCC-----EEEEEGGGGC-------CCCCTHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC-----EEEeecceee---ecceeecchhHHHH
Confidence            38999999999999999999998654     4555533332   23565554454444

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.51  E-value=0.00067  Score=60.42  Aligned_cols=27  Identities=26%  Similarity=0.228  Sum_probs=24.3

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +.+++.|+||+|||++|+.|+..++..
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~~~~~  181 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLELCGGK  181 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            368999999999999999999999753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.51  E-value=0.0012  Score=54.44  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=26.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.||||||++|.+++......  +..+.+++
T Consensus        28 l~li~G~pGsGKT~l~~qia~~~~~~--~~~~~~is   61 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVENACAN--KERAILFA   61 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHh--ccccceee
Confidence            78999999999999999999886443  33444444

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.49  E-value=0.0016  Score=56.91  Aligned_cols=33  Identities=24%  Similarity=0.566  Sum_probs=26.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      |+|+|.+||||||+.+.|..+...   +..++.+.|
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~---~~rivtiEd  201 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPK---EERIISIED  201 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCT---TCCEEEEES
T ss_pred             EEEEeeccccchHHHHHHhhhccc---ccceeeccc
Confidence            799999999999999999877654   345565544

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.49  E-value=0.0046  Score=52.44  Aligned_cols=37  Identities=24%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .++-|.|+|||||||+|-+++......  +..++++|.+
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk~--g~~v~yiDtE   94 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAE   94 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHhC--CCEEEEEECC
Confidence            378899999999999999998877654  4567777755

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.48  E-value=0.0055  Score=51.47  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=27.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      +++|.|.||+||||++.+++-.+... .+..|.+++
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~~a~~-~g~~v~~~s   71 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAM   71 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhhhhh-cccceeEee
Confidence            78999999999999999998765321 145666665

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.46  E-value=0.012  Score=45.95  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      ..|+|.|.||+||||+.+.|..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3699999999999999999864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.43  E-value=0.0063  Score=49.28  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=29.4

Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEE
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC  108 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l  108 (303)
                      ...-++|+|+..-...+-++.+.++...+.+.++|++
T Consensus        91 aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~i  127 (204)
T d2c78a3          91 MDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFM  127 (204)
T ss_dssp             CSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence            3567899999887777777888888999988777765

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0016  Score=55.27  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      +|+++|--|+||||+|..|+..+...  +.+|.++|-+
T Consensus        10 ~i~~sGKGGVGKTTvaa~lA~~lA~~--G~rVLlvD~D   45 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCATAIRLAEQ--GKRVLLVSTD   45 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             EEEEECCCcChHHHHHHHHHHHHHHC--CCCEEEEeCC
Confidence            88999999999999999999999776  5678887754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.34  E-value=0.0079  Score=53.87  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=28.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +|+|+|+.||||||....+.+++...  ...++.+.|
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~~--~~~i~tiEd  194 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVED  194 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEES
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcCC--CceEEEecc
Confidence            79999999999999999999888653  345666654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.31  E-value=0.0012  Score=51.58  Aligned_cols=26  Identities=12%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +|+|.|.-||||||+++.+++.++..
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             EEEEecCCCccHHHHHHHHHhhcccc
Confidence            79999999999999999999999764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0038  Score=50.37  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|.||+|||+++..|+..+..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHHh
Confidence            3689999999999999999998854

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.30  E-value=0.0081  Score=47.20  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=18.5

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |.|.|.|.+||||+.++|..
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            89999999999999999863

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.29  E-value=0.0012  Score=50.42  Aligned_cols=20  Identities=25%  Similarity=0.316  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.|||||||+.+.|..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            77999999999999999864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.26  E-value=0.014  Score=46.94  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=44.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccC-CccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHH-Hh-cCCCCEEE
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEA-KETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVD-RS-VSKDNIII   78 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~-~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~-~~-L~~~~~VI   78 (303)
                      +-++++|.||+||||+|..|++.+..... ..+++.+..++-.+          .-..+|.... .+. .. .++.++||
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I----------~Id~IR~i~~-~~~~~~~~~~~KviI   84 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENI----------GIDDIRTIKD-FLNYSPELYTRKYVI   84 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCB----------CHHHHHHHHH-HHTSCCSSSSSEEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCC----------CHHHHHHHHH-HHhhCcccCCCEEEE
Confidence            56899999999999999999998754322 23566665432111          1245553222 222 11 23446999


Q ss_pred             EcCCCCc
Q 047717           79 VDSLNSI   85 (303)
Q Consensus        79 vD~~n~~   85 (303)
                      +|..-..
T Consensus        85 Id~ad~l   91 (198)
T d2gnoa2          85 VHDCERM   91 (198)
T ss_dssp             ETTGGGB
T ss_pred             EeCcccc
Confidence            9875443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.21  E-value=0.0012  Score=54.82  Aligned_cols=26  Identities=19%  Similarity=0.211  Sum_probs=22.9

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +.|+|.|++|+||||+++++++.++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            36889999999999999999888764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.19  E-value=0.0013  Score=54.23  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      +++|.|.|||||||+|-+++....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            799999999999999999987653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.001  Score=54.49  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      +++|.|.|||||||+|-+++..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7899999999999999988654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0014  Score=53.46  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|+||+||||+|+.+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCcHHHHHHHHHHhccc
Confidence            4889999999999999999998853

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.18  E-value=0.018  Score=47.13  Aligned_cols=24  Identities=13%  Similarity=0.289  Sum_probs=21.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      |+|.|.|.|.+|||||.+.|....
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            789999999999999999997654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0013  Score=52.72  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      |-|+|.|.|++||||+.+.|..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            6799999999999999999864

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0021  Score=51.71  Aligned_cols=36  Identities=19%  Similarity=0.211  Sum_probs=31.1

Q ss_pred             EEEEEcc-CCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQ-PSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~-PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      -++|+|- +|+||||++-.|+..|...  ++.|..++.+
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~--G~rVl~id~d   39 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAA--GYRTAGYKPV   39 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHT--TCCEEEECSE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEECcc
Confidence            5899999 5999999999999999886  5778888754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0018  Score=55.09  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -++|.|.||+|||+++..|+..+..
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHHHh
Confidence            3789999999999999999998754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.09  E-value=0.00081  Score=58.77  Aligned_cols=23  Identities=35%  Similarity=0.549  Sum_probs=21.4

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHc
Q 047717            4 IVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |+|.|.||+||||+|+.|+..|.
T Consensus        31 vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCC
Confidence            78999999999999999998874

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.07  E-value=0.0033  Score=51.22  Aligned_cols=38  Identities=26%  Similarity=0.409  Sum_probs=31.5

Q ss_pred             CEEEEEE-ccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVIC-GQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~-G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |.+|.|+ |-.|+||||+|..|+..|...  +.+|.++|-+
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~--g~~VlliD~D   39 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQL--GHDVTIVDAD   39 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEeCC
Confidence            7777777 889999999999999999865  5678887743

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.05  E-value=0.0072  Score=51.22  Aligned_cols=36  Identities=28%  Similarity=0.325  Sum_probs=28.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      ++.|.|.|||||||+|-+++......  +..++++|.+
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~~~q~~--g~~~vyIDtE   97 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAE   97 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred             eEEEecCCCcHHHHHHHHHHHHHhcC--CCEEEEEECC
Confidence            67899999999999999888766544  4567777754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.05  E-value=0.0049  Score=53.47  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=26.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      .++++|++|+|||.+|+.|++.+-..  +...+.++.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~--~~~~~~~~~   89 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDM   89 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECT
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCC--CcceEEEec
Confidence            57899999999999999999987211  234555553

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.04  E-value=0.0015  Score=50.88  Aligned_cols=20  Identities=20%  Similarity=0.356  Sum_probs=18.1

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.|||||||+..+|..
T Consensus        18 I~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999998764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.002  Score=56.02  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .++++|+||+|||.+|+.|++.++.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~   78 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGI   78 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCcchhHHHHHHHHhhccC
Confidence            5789999999999999999999864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0018  Score=53.81  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=23.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      .++|.|+||+||||+|+.+++.+...
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            47899999999999999999988653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.91  E-value=0.0019  Score=51.39  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|+|+|.+|+||||+|-.|.+.
T Consensus        16 gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc
Confidence            3789999999999999988765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.91  E-value=0.0021  Score=49.19  Aligned_cols=20  Identities=30%  Similarity=0.333  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.||+|||||.+.+..
T Consensus         8 I~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0025  Score=52.43  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      .+++|+|.||||||++|.+++...
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            379999999999999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0025  Score=48.37  Aligned_cols=20  Identities=20%  Similarity=0.356  Sum_probs=18.5

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.|++|||||.+.|..
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0023  Score=53.53  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .|.|+|.+||||||+++.|...+.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            689999999999999999876654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.77  E-value=0.0047  Score=51.78  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=33.5

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      |..|.|+|-=|+||||+|-.|+..|...  +++|.++|-+
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~--G~rVllID~D   38 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCD   38 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEEC
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhC--CCcEEEEecC
Confidence            8899999999999999999999999875  6788888743

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.77  E-value=0.0027  Score=51.75  Aligned_cols=25  Identities=20%  Similarity=0.173  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      +++|.|.||+|||++|-+++-..-.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            7999999999999999999877643

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.75  E-value=0.0027  Score=50.13  Aligned_cols=21  Identities=33%  Similarity=0.423  Sum_probs=19.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~   24 (303)
                      |+|+|.+|+||||+|-.|.+.
T Consensus        18 vli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          18 VLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHc
Confidence            789999999999999887766

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.74  E-value=0.0029  Score=53.82  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +|.|.|++|.||||+|+.+.+..
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            78999999999999999987764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0048  Score=51.84  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=32.1

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA   40 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~   40 (303)
                      .+|+++|-=|+||||+|-.|+..+...  +.+|.++|-+
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~lA~~--G~rVllvD~D   57 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRLADM--GFDVHLTTSD   57 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEeCC
Confidence            489999999999999999999999875  5778888754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.69  E-value=0.0097  Score=52.61  Aligned_cols=24  Identities=42%  Similarity=0.580  Sum_probs=21.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      |+|+|++|+|||-+|+.||+.++.
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~~~   94 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHLDI   94 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             eeeeCCCCccHHHHHHHHHhhccc
Confidence            899999999999999999998743

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0031  Score=49.32  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             EE--EEEEccCCCCHHHHHHHHHH
Q 047717            2 AL--IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~L--I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+  |+|+|.||+||||+.+++..
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            55  89999999999999998764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.65  E-value=0.0028  Score=49.69  Aligned_cols=19  Identities=32%  Similarity=0.461  Sum_probs=17.9

Q ss_pred             EEEEccCCCCHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La   22 (303)
                      |+|.|.|++||||+.+.|.
T Consensus         3 I~lvG~~nvGKSsLin~l~   21 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLT   21 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999999985

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.64  E-value=0.0027  Score=48.98  Aligned_cols=20  Identities=15%  Similarity=0.303  Sum_probs=18.0

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.|||||||+.+.|..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            78999999999999998753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.62  E-value=0.0028  Score=53.34  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=20.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .+.|+|++||||||+++.|...+.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCChHHHHHHHHhcccC
Confidence            689999999999999999876553

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.57  E-value=0.0033  Score=50.92  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      +++|.|.||||||++|.+++-.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            7899999999999999887653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.54  E-value=0.0028  Score=49.25  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=18.0

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      -|+|.|.||+||||+..+|.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48899999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.54  E-value=0.0029  Score=52.50  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|++||||||+.+.|+-..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            68899999999999999876543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.54  E-value=0.029  Score=47.21  Aligned_cols=56  Identities=16%  Similarity=0.268  Sum_probs=36.1

Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE  143 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E  143 (303)
                      .+-++|+|+..-....-.+++..++..+.+.+++.-..+          |     .....+.+.++..+|-
T Consensus        92 D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D----------~-----~~~~~~~l~~~~~~lg  147 (267)
T d2dy1a2          92 DAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLD----------K-----GGDYYALLEDLRSTLG  147 (267)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGG----------G-----CCCHHHHHHHHHHHHC
T ss_pred             CceEEEeeccCCccchhHHHHHhhhhccccccccccccc----------c-----cccchhhhhhHHHHhc
Confidence            456788888777766677777777887777655432211          1     1224567778888875

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.54  E-value=0.093  Score=41.80  Aligned_cols=51  Identities=16%  Similarity=0.101  Sum_probs=30.6

Q ss_pred             HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717           65 SEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER  122 (303)
Q Consensus        65 ~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R  122 (303)
                      +.+...+..|..+|+|..  ..|.+.    + +.......+||+.+|.-..+.|..+|
T Consensus        89 ~~i~~~~~~gk~~lldid--~~g~~~----l-k~~~~~~i~IfI~pps~e~l~~l~kr  139 (199)
T d1kjwa2          89 QSVREVAEQGKHCILDVS--ANAVRR----L-QAAHLHPIAIFIRPRSLENVLEINKR  139 (199)
T ss_dssp             HHHHHHHHTTCEEEECCC--TTHHHH----H-HHTTCCCEEEEECCSSHHHHHHHCTT
T ss_pred             eEEEehhcCCCccccccc--chHHhh----h-hhhccceeEEeeccccHHHHHhhhcc
Confidence            456677888999999973  334322    2 33445556889987644434444333

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.53  E-value=0.0025  Score=50.69  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=18.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~   24 (303)
                      |+|+|.+|+||||+|-.|.++
T Consensus        18 vli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHc
Confidence            789999999999999988654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.53  E-value=0.0029  Score=52.91  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .+.|+|+.||||||+.+.|...+.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            689999999999999999876654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0034  Score=52.80  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|+|+.||||||+++.|...+.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcccC
Confidence            689999999999999999876553

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.003  Score=52.77  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|++||||||+.+.|+-..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            68899999999999999886543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.50  E-value=0.0036  Score=52.19  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68899999999999999987554

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0037  Score=51.86  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-.+
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68899999999999999887654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.47  E-value=0.0039  Score=48.15  Aligned_cols=20  Identities=25%  Similarity=0.380  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.||+||||+.+++..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0037  Score=47.85  Aligned_cols=20  Identities=45%  Similarity=0.713  Sum_probs=18.1

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.|++||||+.++|..
T Consensus         4 I~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.33  E-value=0.0046  Score=48.03  Aligned_cols=20  Identities=35%  Similarity=0.401  Sum_probs=18.4

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+++|.+|+||||+.+.|..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            89999999999999998864

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.32  E-value=0.042  Score=43.88  Aligned_cols=42  Identities=21%  Similarity=0.262  Sum_probs=28.1

Q ss_pred             HHHhcC--CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEE
Q 047717           67 VDRSVS--KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC  108 (303)
Q Consensus        67 v~~~L~--~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l  108 (303)
                      +.+.++  ..-++|+|+..-...+-.+.+.++...+.+.++|.+
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~i  126 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYV  126 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEE
Confidence            334443  456888999776666666667777888876666554

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.31  E-value=0.038  Score=46.74  Aligned_cols=57  Identities=12%  Similarity=0.237  Sum_probs=39.6

Q ss_pred             CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEe-cCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717           73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCD-LEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK  144 (303)
Q Consensus        73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~-~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~  144 (303)
                      .+-++|+|+..-....-..+|..++..+.|.. +|+. .+          |    ...-..++++++..++..
T Consensus        96 D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i-~fINKmD----------r----~~ad~~~~l~ei~~~l~~  153 (276)
T d2bv3a2          96 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMD----------K----TGADLWLVIRTMQERLGA  153 (276)
T ss_dssp             CEEEEEEETTTSSCHHHHHHHHHHHTTTCCEE-EEEECTT----------S----TTCCHHHHHHHHHHTTCC
T ss_pred             hheEEeccccCCcchhHHHHHHHHHHcCCCEE-EEEeccc----------c----cccccchhHHHHHHHhCC
Confidence            55789999988888888888888888888854 4442 11          1    112246788888888765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.0045  Score=52.86  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|+|+.||||||+.+.|.-.+.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCc
Confidence            689999999999999999876554

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0048  Score=48.04  Aligned_cols=20  Identities=25%  Similarity=0.409  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.||+||||+.+.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.26  E-value=0.0049  Score=51.35  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            467899999999999999887654

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.25  E-value=0.0088  Score=50.67  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=32.4

Q ss_pred             CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      |..|++.|-=|+||||+|-.|+..|...  +++|.++|-
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~--G~rVLlID~   38 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGC   38 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEec
Confidence            8889999999999999999999999765  677888773

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.0049  Score=49.44  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.|||||||+.++|..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            389999999999999998865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.21  E-value=0.0045  Score=48.14  Aligned_cols=20  Identities=30%  Similarity=0.383  Sum_probs=17.7

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      -|+|.|.||+||||+.++|.
T Consensus        18 kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38999999999999999763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0053  Score=47.86  Aligned_cols=20  Identities=25%  Similarity=0.368  Sum_probs=17.9

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.||+||||+.+.+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0053  Score=47.72  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|+|.+|+||||+.+.|..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999999875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.005  Score=48.53  Aligned_cols=19  Identities=16%  Similarity=0.223  Sum_probs=17.4

Q ss_pred             EEEEccCCCCHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La   22 (303)
                      |+|.|.||+||||+.+.|.
T Consensus         8 i~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            7899999999999999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.18  E-value=0.0055  Score=47.24  Aligned_cols=20  Identities=25%  Similarity=0.408  Sum_probs=17.9

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+||||||+.++|..
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            77889999999999998864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.15  E-value=0.0055  Score=51.02  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|.-.+.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            688999999999999999876553

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.13  E-value=0.0036  Score=51.86  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            689999999999999999876543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.11  E-value=0.0059  Score=48.06  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|+|.||+||||+.+.+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.10  E-value=0.0059  Score=47.13  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |++.|.||+||||+.++|..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.10  E-value=0.0029  Score=49.74  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             CEEEEEEccCCCCHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La   22 (303)
                      +|=|.|.|.|+|||||+.+.|.
T Consensus         1 ~~~VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           1 IADVGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3558999999999999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.09  E-value=0.0048  Score=52.03  Aligned_cols=23  Identities=35%  Similarity=0.444  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+++.|+-.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            68899999999999999987543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0057  Score=47.56  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .|+|.|.|++||||+.++|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999853

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.0058  Score=54.03  Aligned_cols=25  Identities=36%  Similarity=0.515  Sum_probs=20.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.+|+|+||+||||....+...+.
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l~  188 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAALI  188 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHHHHH
Confidence            4789999999999999877655553

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0036  Score=48.82  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.8

Q ss_pred             EEEEEEccCCCCHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La   22 (303)
                      +-|+|.|.|++||||+.+.|.
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            469999999999999999874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.00  E-value=0.0044  Score=50.19  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+..+.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcccc
Confidence            578999999999999999876553

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0073  Score=50.47  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      +.+|+|.||+||||++-+|+..+.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999987753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.99  E-value=0.0039  Score=49.11  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=18.7

Q ss_pred             CEEEEEEccCCCCHHHHHHHHH
Q 047717            1 MALIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         1 M~LI~l~G~PGSGKSTlA~~La   22 (303)
                      |+=|.|.|.|++||||+.+.|.
T Consensus         1 ~~~VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           1 LADVGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSE
T ss_pred             CCeEEEECCCCCCHHHHHHHHh
Confidence            3458999999999999998763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0067  Score=47.33  Aligned_cols=20  Identities=25%  Similarity=0.408  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.||+||||+.+++..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.0068  Score=47.10  Aligned_cols=20  Identities=20%  Similarity=0.365  Sum_probs=18.0

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.||+||||+.+.+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.92  E-value=0.0037  Score=52.65  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .+.|+|.+||||||+.+.|...+.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHhcCC
Confidence            689999999999999998765443

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0076  Score=46.58  Aligned_cols=20  Identities=25%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.+|+||||+.+++..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0077  Score=46.47  Aligned_cols=20  Identities=30%  Similarity=0.358  Sum_probs=18.1

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.||+||||+.+++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0078  Score=46.63  Aligned_cols=20  Identities=25%  Similarity=0.416  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+..+|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.83  E-value=0.0051  Score=48.27  Aligned_cols=18  Identities=33%  Similarity=0.409  Sum_probs=16.7

Q ss_pred             EEEEccCCCCHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCL   21 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~L   21 (303)
                      |+|.|.|||||||+.++|
T Consensus        20 I~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          20 ILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             EEEEEETTSSHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999876

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.83  E-value=0.0073  Score=47.35  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|+|.||+||||+.+.|..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            378999999999999998864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.80  E-value=0.0081  Score=46.12  Aligned_cols=20  Identities=20%  Similarity=0.409  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.+++..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.0082  Score=46.30  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|+|.+|+||||+.+++..
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0084  Score=46.44  Aligned_cols=20  Identities=15%  Similarity=0.406  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.+|+||||+.+++..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.74  E-value=0.0041  Score=51.93  Aligned_cols=23  Identities=22%  Similarity=0.164  Sum_probs=20.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ++.|.|+.||||||+.+.|+-..
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            68999999999999999987654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.74  E-value=0.0056  Score=47.65  Aligned_cols=19  Identities=26%  Similarity=0.356  Sum_probs=17.3

Q ss_pred             EEEEccCCCCHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La   22 (303)
                      |+|+|.|||||||+.++|.
T Consensus        15 IvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.68  E-value=0.009  Score=46.10  Aligned_cols=20  Identities=25%  Similarity=0.332  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.++|..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0089  Score=46.34  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.||+||||+.+++..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.65  E-value=0.031  Score=49.59  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHcc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      ++|.|.||+|||+++..|+.++-.
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i~~   69 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRIVK   69 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHHHh
Confidence            578899999999999999987754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0092  Score=46.57  Aligned_cols=20  Identities=30%  Similarity=0.436  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.+|+||||+.+.|..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0092  Score=46.45  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.57  E-value=0.0029  Score=48.45  Aligned_cols=21  Identities=38%  Similarity=0.569  Sum_probs=19.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~   24 (303)
                      |+|.|.|++||||+.+.|...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.55  E-value=0.0097  Score=47.29  Aligned_cols=20  Identities=20%  Similarity=0.398  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.+.|..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0098  Score=45.98  Aligned_cols=20  Identities=20%  Similarity=0.307  Sum_probs=17.7

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.+.+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999988753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.50  E-value=0.011  Score=45.90  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.+|+||||+.+++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.011  Score=45.42  Aligned_cols=20  Identities=30%  Similarity=0.353  Sum_probs=18.1

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.+++..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.01  Score=45.97  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=17.9

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999998754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.26  E-value=0.01  Score=49.35  Aligned_cols=24  Identities=17%  Similarity=0.469  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|.-.+.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            688999999999999999866543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.013  Score=45.34  Aligned_cols=20  Identities=25%  Similarity=0.370  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+|||++.+.+..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.013  Score=45.16  Aligned_cols=20  Identities=25%  Similarity=0.401  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.+|+|||++.+.+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            89999999999999998764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.22  E-value=0.011  Score=49.69  Aligned_cols=24  Identities=33%  Similarity=0.427  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|.-.+.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCc
Confidence            688999999999999999865543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.013  Score=45.91  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=18.4

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|+|.+|+||||+.+++..
T Consensus         8 ivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998765

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.19  E-value=0.012  Score=49.70  Aligned_cols=17  Identities=24%  Similarity=0.272  Sum_probs=13.0

Q ss_pred             EEEEccCCCCHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATC   20 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~   20 (303)
                      ++|.|+|||||||.+-.
T Consensus        17 ~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             EEECCCTTSCHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHH
Confidence            45669999999986543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.013  Score=45.03  Aligned_cols=21  Identities=38%  Similarity=0.346  Sum_probs=18.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+||||+.+++..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.014  Score=45.00  Aligned_cols=20  Identities=25%  Similarity=0.404  Sum_probs=17.9

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.+++..
T Consensus         6 i~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.014  Score=45.38  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=17.9

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+..++..
T Consensus         5 ivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78889999999999988765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.08  E-value=0.012  Score=49.29  Aligned_cols=20  Identities=25%  Similarity=0.431  Sum_probs=18.1

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La   22 (303)
                      -|+|.|.|||||||+.+.|.
T Consensus        34 ~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            48899999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.019  Score=44.15  Aligned_cols=20  Identities=30%  Similarity=0.428  Sum_probs=18.4

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.||+||||+.++|..
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.014  Score=45.30  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=17.9

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998753

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.99  E-value=0.015  Score=49.47  Aligned_cols=17  Identities=29%  Similarity=0.380  Sum_probs=13.3

Q ss_pred             EEEEccCCCCHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATC   20 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~   20 (303)
                      ++|.|.|||||||.+-.
T Consensus        27 ~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             EEEEECTTSCHHHHHHH
T ss_pred             EEEEecCCccHHHHHHH
Confidence            45779999999986543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.99  E-value=0.027  Score=45.41  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=28.9

Q ss_pred             EEEEE-ccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717            3 LIVIC-GQPSSGKSLAATCLAEALKESEAKETVRIIDE   39 (303)
Q Consensus         3 LI~l~-G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~   39 (303)
                      +|.+. +-.|+||||+|..|+..|...  +.+|.++|-
T Consensus         4 vIav~~~kGGvGKTtia~nLA~~la~~--g~~VlliD~   39 (237)
T d1g3qa_           4 IISIVSGKGGTGKTTVTANLSVALGDR--GRKVLAVDG   39 (237)
T ss_dssp             EEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence            56565 889999999999999999865  567888874

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.012  Score=48.66  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      ++.|.|+.||||||+.+.|+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            688999999999999998865

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.81  E-value=0.0092  Score=46.40  Aligned_cols=20  Identities=20%  Similarity=0.411  Sum_probs=8.4

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.||+||||+.++|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.77  E-value=0.016  Score=45.70  Aligned_cols=18  Identities=33%  Similarity=0.409  Sum_probs=17.4

Q ss_pred             EEEEccCCCCHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCL   21 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~L   21 (303)
                      |+|.|.+||||||+.+++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999998

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.011  Score=45.91  Aligned_cols=20  Identities=20%  Similarity=0.323  Sum_probs=17.1

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.+++..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999987653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.72  E-value=0.015  Score=48.21  Aligned_cols=24  Identities=17%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            678999999999999998876543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.018  Score=45.22  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|.+|+||||+.+++..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            89999999999999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.66  E-value=0.02  Score=44.31  Aligned_cols=20  Identities=25%  Similarity=0.388  Sum_probs=18.0

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |++.|.+|+||||+.+.+..
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68899999999999998764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.52  E-value=0.2  Score=40.55  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=28.1

Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEe
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCD  109 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~  109 (303)
                      ..+-++|+|+..-...+-++...+++..|.+..+|.+.
T Consensus       113 aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vN  150 (222)
T d1zunb3         113 CDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAIN  150 (222)
T ss_dssp             CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEE
Confidence            35567888887777777777777888888777666553

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.022  Score=44.89  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+|||++..++..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.37  E-value=0.022  Score=44.47  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+|+|||++.+.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.33  E-value=0.019  Score=46.28  Aligned_cols=25  Identities=24%  Similarity=0.518  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .|+|.|+|++|||++|..|.+.+..
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~~l~G   79 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIHFIQG   79 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCccHHHHHHHHHHHhCC
Confidence            5899999999999999999999853

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.23  E-value=0.023  Score=46.58  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      ..+|+|.+|+||||+.+.|...
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTT
T ss_pred             eEEEECCCCCCHHHHHHhhcch
Confidence            4689999999999999987543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.14  E-value=0.024  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|+|.|.+||||||+.+++..
T Consensus         8 KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999853

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.96  E-value=0.029  Score=46.56  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=19.7

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHc
Q 047717            4 IVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |+|.|.+|+||+++|+.|.....
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCcCHHHHHHHHHHhcC
Confidence            67889999999999999976543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.84  E-value=0.031  Score=47.05  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      .+++.|+|++|||+++..|...++.
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            5789999999999999999998864

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.04  Score=48.93  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=24.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      ++|.|.+|||||+..+.|...+-..  +..++++|
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~~~--g~~~iiiD   85 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGLLR--GDRMVIVD   85 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHhC--CCCEEEEe
Confidence            6899999999999988776655332  34555555

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.038  Score=43.06  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=18.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|++.|.+|+||||+..++..
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            389999999999999997654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.23  E-value=0.04  Score=42.98  Aligned_cols=21  Identities=24%  Similarity=0.276  Sum_probs=18.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~   24 (303)
                      |+|.|.+|+||||+..++...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999998654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=0.25  Score=42.75  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=28.3

Q ss_pred             CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEE
Q 047717           72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLY  107 (303)
Q Consensus        72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~  107 (303)
                      ..+-++|||+.--....-..++..|...+.+.+++.
T Consensus       120 ~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~vi  155 (341)
T d1n0ua2         120 TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVI  155 (341)
T ss_dssp             CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEE
Confidence            577899999988777777778888888888776553

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.27  E-value=0.049  Score=42.96  Aligned_cols=21  Identities=38%  Similarity=0.529  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      +|+|+|...||||.+|.+|+.
T Consensus         1 iiLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCccHHHHHHHHHh
Confidence            589999999999999998763

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.89  E-value=0.069  Score=41.31  Aligned_cols=20  Identities=25%  Similarity=0.343  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |+|.|..|+||||+.+++..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999998864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.43  E-value=0.028  Score=46.31  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=18.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      ..+|.|.+|+||||+.+.|....
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            45789999999999999886543

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.42  E-value=0.066  Score=38.90  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=16.7

Q ss_pred             EEEEEccCCCCHHHHHH-HHHHHH
Q 047717            3 LIVICGQPSSGKSLAAT-CLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~-~La~~l   25 (303)
                      ..+|+++||||||+.+- .+.+..
T Consensus         9 ~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           9 TTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             cEEEEcCCCCChhHHHHHHHHHHh
Confidence            46889999999997763 334444

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.08  Score=43.44  Aligned_cols=22  Identities=27%  Similarity=0.296  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      +++|+|+.+|||||+.|.++-.
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHHHHH
Confidence            6899999999999999998753

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.12  E-value=0.086  Score=42.97  Aligned_cols=22  Identities=32%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      +++|+|+.+|||||+.|.++-.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHH
Confidence            6899999999999999988643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.91  E-value=0.081  Score=44.26  Aligned_cols=21  Identities=38%  Similarity=0.453  Sum_probs=18.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|.++|.|.+||||+.+.|..
T Consensus       114 ~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         114 RALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEEecCccchhhhhhhhhc
Confidence            389999999999999998864

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.51  E-value=0.084  Score=44.99  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=18.3

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |.|.|+|.+||||+-+.|-.
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            78999999999999999854

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=89.41  E-value=0.1  Score=43.72  Aligned_cols=22  Identities=36%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEA   24 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~   24 (303)
                      -|.|.|+|.+||||+-+.|...
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            4889999999999999988743

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.12  E-value=0.092  Score=44.43  Aligned_cols=21  Identities=29%  Similarity=0.352  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      -|.|.|+|.|||||+-++|..
T Consensus        12 kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            488999999999999999874

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.08  E-value=0.039  Score=47.42  Aligned_cols=17  Identities=29%  Similarity=0.477  Sum_probs=14.6

Q ss_pred             EEEEEccCCCCHHHHHH
Q 047717            3 LIVICGQPSSGKSLAAT   19 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~   19 (303)
                      +-++-|++|+|||||+.
T Consensus        16 valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEEECTTSCHHHHTC
T ss_pred             EEEEEccCCCCcccccc
Confidence            35789999999999865

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.91  E-value=0.068  Score=45.93  Aligned_cols=16  Identities=25%  Similarity=0.434  Sum_probs=14.1

Q ss_pred             EEEEccCCCCHHHHHH
Q 047717            4 IVICGQPSSGKSLAAT   19 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~   19 (303)
                      -++-|++|+||||++.
T Consensus        17 alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEECCTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            4689999999999984

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.59  E-value=0.11  Score=43.80  Aligned_cols=21  Identities=38%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La   22 (303)
                      |-|+++|-.+|||||+.+.|.
T Consensus        25 P~ivVvG~~ssGKSSliNaLl   45 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIV   45 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHh
Confidence            678999999999999999986

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=88.31  E-value=0.033  Score=43.13  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHc
Q 047717            4 IVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      .+|+|.-||||||+..+|.-.|.
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            46789999999999999987664

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=87.67  E-value=0.14  Score=40.10  Aligned_cols=19  Identities=26%  Similarity=0.424  Sum_probs=17.5

Q ss_pred             EEEEccCCCCHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLA   22 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La   22 (303)
                      |.+.|.+.+||||+...|.
T Consensus         8 IaiiGhvd~GKSTL~~~L~   26 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALT   26 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeccCCcHHHHHHHHH
Confidence            6899999999999999985

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.42  E-value=0.15  Score=42.73  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      |-|+++|--+|||||+.+.|..
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHhC
Confidence            6689999999999999999863

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.82  E-value=0.15  Score=37.43  Aligned_cols=21  Identities=19%  Similarity=0.178  Sum_probs=16.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~   23 (303)
                      ..+|.++.|||||+++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            578999999999998765443

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.77  E-value=0.19  Score=42.12  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=19.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHH
Q 047717            2 ALIVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~   23 (303)
                      .+|.++|+.+|||||+.+.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~   54 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAG   54 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            4799999999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.21  E-value=0.17  Score=42.32  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +-+|+|+-||||||+-.+|.=.|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            67899999999999999885444

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.10  E-value=0.15  Score=43.60  Aligned_cols=17  Identities=29%  Similarity=0.477  Sum_probs=14.5

Q ss_pred             EEEEEccCCCCHHHHHH
Q 047717            3 LIVICGQPSSGKSLAAT   19 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~   19 (303)
                      +-++-|++|+|||||+.
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          16 VAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEEECSTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            34789999999999875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=85.55  E-value=0.37  Score=40.57  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHccc
Q 047717            4 IVICGQPSSGKSLAATCLAEALKES   28 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~~~   28 (303)
                      +.|.|.+|+|||+++.+++......
T Consensus        46 ~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          46 GLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            6789999999999999999877543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.15  E-value=0.3  Score=37.97  Aligned_cols=22  Identities=32%  Similarity=0.279  Sum_probs=17.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l   25 (303)
                      .+++++.|||||.++-.++...
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~   47 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYR   47 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHHH
Confidence            4688999999998777666543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=84.80  E-value=0.25  Score=39.06  Aligned_cols=20  Identities=20%  Similarity=0.370  Sum_probs=18.2

Q ss_pred             EEEEccCCCCHHHHHHHHHH
Q 047717            4 IVICGQPSSGKSLAATCLAE   23 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~   23 (303)
                      |.+.|...+||||++..|..
T Consensus        11 i~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3          11 IGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEEccCCcHHHHHHHHHh
Confidence            88999999999999999853

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.59  E-value=0.61  Score=34.33  Aligned_cols=35  Identities=23%  Similarity=0.198  Sum_probs=24.0

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      .|-+++|+..|||||-.-+.+..+...  +..++++.
T Consensus         3 ~L~li~GpMfsGKTt~Li~~~~~~~~~--g~~v~~ik   37 (133)
T d1xbta1           3 QIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIK   37 (133)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred             EEEEEEecccCHHHHHHHHHHHHHHHc--CCcEEEEe
Confidence            367899999999999766555555433  45565543

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=84.54  E-value=0.28  Score=46.50  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=21.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      -|+++|-+|||||+-++.+.++|.
T Consensus        88 sIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          88 CVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999988874

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.79  E-value=0.35  Score=39.45  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      -|+++|-..+||||++..|.-.++
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~~g   31 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYKCG   31 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHcC
Confidence            378999999999999999976655

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=83.72  E-value=0.67  Score=34.52  Aligned_cols=34  Identities=26%  Similarity=0.230  Sum_probs=24.6

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRII   37 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~   37 (303)
                      .|-+++|+..|||||-.-+....+...  +..++++
T Consensus         8 ~l~lI~GpMfSGKTteLi~~~~~~~~~--g~~vl~i   41 (141)
T d1xx6a1           8 WVEVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVF   41 (141)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred             eEEEEEeccccHHHHHHHHHHHHhhhc--CCcEEEE
Confidence            366889999999999877777666544  4455543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.61  E-value=0.31  Score=42.18  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=19.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHH
Q 047717            3 LIVICGQPSSGKSLAATCLAEAL   25 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l   25 (303)
                      +-+|+|.-||||||+..+|.=.|
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            55899999999999999986444

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.26  E-value=0.33  Score=46.10  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      -|+++|-+|||||+-++.+.++|-
T Consensus        93 ~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          93 SILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999998873

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.52  E-value=0.37  Score=45.76  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      -|+|+|-+|||||.-++.+.++|.
T Consensus       127 sIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         127 SLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999988874

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.50  E-value=0.14  Score=40.38  Aligned_cols=16  Identities=25%  Similarity=0.478  Sum_probs=14.0

Q ss_pred             EEEEccCCCCHHHHHH
Q 047717            4 IVICGQPSSGKSLAAT   19 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~   19 (303)
                      +++++++|||||+.|-
T Consensus        43 ~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             EEEECSSHHHHHHHHH
T ss_pred             EEEEcCCCCchhHHHH
Confidence            6799999999998864

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.72  E-value=0.4  Score=46.14  Aligned_cols=25  Identities=20%  Similarity=0.411  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKE   27 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~   27 (303)
                      -|+|+|-+|||||+-++.+.++|..
T Consensus       125 sIiisGeSGaGKTe~~K~il~yL~~  149 (794)
T d2mysa2         125 SILITGESGAGKTVNTKRVIQYFAT  149 (794)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4899999999999999999988843

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.18  E-value=0.53  Score=37.66  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=19.7

Q ss_pred             EEEEccCCCCHHHHHHHHHHHHc
Q 047717            4 IVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         4 I~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      |.+.|--++||||++..|.-..+
T Consensus         6 i~viGHVd~GKTTL~~~Ll~~~g   28 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLMDRG   28 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHB
T ss_pred             EEEEecCCCCHHHHHHHHHHHcC
Confidence            78999999999999998865544

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=80.90  E-value=9.6  Score=30.30  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=23.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717            3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID   38 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~   38 (303)
                      ..+|+|..|||||-++-..+...-..  +..+.++-
T Consensus        78 ~~LL~GdvGsGKT~V~~~a~~~~~~~--g~qv~~l~  111 (233)
T d2eyqa3          78 DRLVCGDVGFGKTEVAMRAAFLAVDN--HKQVAVLV  111 (233)
T ss_dssp             EEEEECCCCTTTHHHHHHHHHHHHTT--TCEEEEEC
T ss_pred             CeEEEcCCCCCcHHHHHHHHHHHHHc--CCceEEEc
Confidence            46899999999999988766543222  44555544

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=80.81  E-value=0.46  Score=45.65  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=21.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      -|+|+|-+|||||.-++.+.++|.
T Consensus       123 ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         123 SCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999998875

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=80.29  E-value=1.1  Score=33.22  Aligned_cols=34  Identities=15%  Similarity=0.081  Sum_probs=22.4

Q ss_pred             EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717            2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRII   37 (303)
Q Consensus         2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~   37 (303)
                      .|=+++|+..|||||-.-.....+...  +..++++
T Consensus         3 ~L~~i~GpMfsGKTteLi~~~~~~~~~--~~kv~~i   36 (139)
T d2b8ta1           3 WIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVF   36 (139)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred             EEEEEEccccCHHHHHHHHHHHHHHHC--CCcEEEE
Confidence            366899999999999555545555433  4455543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=80.03  E-value=0.51  Score=44.91  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=21.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHHc
Q 047717            3 LIVICGQPSSGKSLAATCLAEALK   26 (303)
Q Consensus         3 LI~l~G~PGSGKSTlA~~La~~l~   26 (303)
                      -|+|+|-+|||||+-++.+.++|.
T Consensus        96 ~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          96 SIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999998884