Citrus Sinensis ID: 047744

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEccccccccccccEEEEEEEccEEEEEEEEEccccccEEccEEEEEEEcccccccEEEEEEEEEccccccccccEEEEEEccccccccccEEEEEccEEEcccccccEEEEccccccEEEcccccccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEEcccccccEcEEEEEEEcccccccccEEEEEEEEcccccccccEEEEEEEcHHHHHHcccccccHHHHHHccccccccEccccccccEEEccccEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MKGGILEVLLVNAegikhtnifgtpSYYVIARcgnqehrsknsmvkgekawwnekfifefpmsdwklLTHIKFRIMdtelltdggfvgETVFSYIHDQTSVNQCRYYLggiitdqsndkelievkpapynvlleddtykgqiVIGFKFIVN
Flexible Loop (DISEMBL)
MKGGILEVLLVNAEgikhtnifgTPSYYVIARCgnqehrsknsMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIItdqsndkelIEVKPApynvlleddtykgqIVIGFKFIVN
Low Complexity Region (SEG)
MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN
Disordered region (IsUnstruct)
***GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ*******MVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV*
Disordered Region (DISOPRED)
*KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSK*SMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGG***********IEVKPAPYNVLLEDDTYKGQIVIGFKFIVN
Disordered Region (DISEMBL)
MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE*********GEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN
Disordered Region (DISPRO)
*KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q0JBH9	144	Elicitor-responsive prote	yes	no	0.807	0.847	0.317	7e-12
Q25AG5	144	Elicitor-responsive prote	N/A	no	0.807	0.847	0.317	7e-12
Q9C8S6	147	C2 domain-containing prot	no	no	0.807	0.829	0.277	7e-07
Q0JHU5	159	Elicitor-responsive prote	no	no	0.880	0.836	0.245	1e-05
A2WWV5	159	Elicitor-responsive prote	N/A	no	0.880	0.836	0.245	1e-05
Q9ZT47	150	16 kDa phloem protein 1 O	N/A	no	0.867	0.873	0.258	9e-05
Q9ZT46	138	16 kDa phloem protein 2 O	N/A	no	0.867	0.949	0.264	0.0004

>sp|Q0JBH9|ERG3_ORYSJ Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica GN=ERG3 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 26/148 (17%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
           M  G LEVLLV A+G+++T+       Y + +C +QE +S  +  KG    WNE F+F  
Sbjct: 1   MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 60

Query: 61  PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
             +     T +  ++MD++  TD  FVGE   S              L  I T+ S    
Sbjct: 61  THN----ATELIIKLMDSDSGTDDDFVGEATIS--------------LEAIYTEGS---- 98

Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
              + P  YNV+ E++ Y+G+I +G  F
Sbjct: 99  ---IPPTVYNVVKEEE-YRGEIKVGLTF 122

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q25AG5|ERG3_ORYSI Elicitor-responsive protein 3 OS=Oryza sativa subsp. indica GN=ERG3 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 26/148 (17%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
           M  G LEVLLV A+G+++T+       Y + +C +QE +S  +  KG    WNE F+F  
Sbjct: 1   MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 60

Query: 61  PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
             +     T +  ++MD++  TD  FVGE   S              L  I T+ S    
Sbjct: 61  THN----ATELIIKLMDSDSGTDDDFVGEATIS--------------LEAIYTEGS---- 98

Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
              + P  YNV+ E++ Y+G+I +G  F
Sbjct: 99  ---IPPTVYNVVKEEE-YRGEIKVGLTF 122

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9C8S6|Y1322_ARATH C2 domain-containing protein At1g63220 OS=Arabidopsis thaliana GN=At1g63220 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 26/148 (17%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
           M  G LEV+LV+A+G++  +       YV   C  Q+ +S  +   G    WNE FIF  
Sbjct: 1   MPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 60

Query: 61  PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
                   T +K +I D ++ T+   VGE                  L  +  + S    
Sbjct: 61  SEG----TTELKAKIFDKDVGTEDDAVGEATIP--------------LEPVFVEGS---- 98

Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
              + P  YNV ++D+ YKG+I +   F
Sbjct: 99  ---IPPTAYNV-VKDEEYKGEIWVALSF 122

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JHU5|ERG1_ORYSJ Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica GN=ERG1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 18/151 (11%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSY---YVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
           G+LEV LV+A+G+   +  G       YV+ +  +QE +S  +  +G+   WNE F F+ 
Sbjct: 5   GVLEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQI 64

Query: 61  PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
             +       +  R+MD +  +   F+GE   + + D  S+                +  
Sbjct: 65  NSTAATGQHKLFLRLMDHDTFSRDDFLGEATIN-VTDLISLGM--------------EHG 109

Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN 151
             E+  + + V+L D TY G+I +   F  +
Sbjct: 110 TWEMSESKHRVVLADKTYHGEIRVSLTFTAS 140

May play a role in plant defense signaling. Isoform 2 binds to phospholipids in a Ca(2+)-dependent manner in response to pathogen elicitors.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WWV5|ERG1_ORYSI Elicitor-responsive protein 1 OS=Oryza sativa subsp. indica GN=ERG1 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 18/151 (11%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSY---YVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
           G+LEV LV+A+G+   +  G       YV+ +  +QE +S  +  +G+   WNE F F+ 
Sbjct: 5   GVLEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQI 64

Query: 61  PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
             +       +  R+MD +  +   F+GE   + + D  S+                +  
Sbjct: 65  NSTAATGQHKLFLRLMDHDTFSRDDFLGEATIN-VTDLISLGM--------------EHG 109

Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN 151
             E+  + + V+L D TY G+I +   F  +
Sbjct: 110 TWEMSESKHRVVLADKTYHGEIRVSLTFTAS 140

May play a role in plant defense signaling. Isoform 2 binds to phospholipids in a Ca(2+)-dependent manner in response to pathogen elicitors.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9ZT47|PP16A_CUCMA 16 kDa phloem protein 1 OS=Cucurbita maxima GN=PP16-1 PE=1 SV=3

 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 20/151 (13%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTP-SYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIF- 58
           M  G++EV L++ +G++  +    P   Y       QE  SK +   G    W+EKF F 
Sbjct: 1   MGMGMMEVHLISGKGLQAHDPLNKPIDPYAEINFKGQERMSKVAKNAGPNPLWDEKFKFL 60

Query: 59  -EFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN 117
            E+P S      HI F++MD + +    ++G+           ++       G+   +S 
Sbjct: 61  AEYPGSGGDF--HILFKVMDHDAIDGDDYIGDV---------KIDVKNLLAEGVRKGKS- 108

Query: 118 DKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
                E+ P  Y+VL     +KG+I +G  F
Sbjct: 109 -----EMPPRMYHVLAHKIHFKGEIEVGVSF 134

Binds to both sense and antisense RNA. Interacts with mesophyll plasmodesmata to mediate its own cell-to-cell transport and potentiate RNA trafficking.

Cucurbita maxima (taxid: 3661)

>sp|Q9ZT46|PP16B_CUCMA 16 kDa phloem protein 2 OS=Cucurbita maxima GN=PP16-2 PE=1 SV=3

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 20/151 (13%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTP-SYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIF- 58
           M  G++EV L++ +G++  +    P   Y       QE  SK +   G    WNEKF F 
Sbjct: 1   MGMGMMEVHLISGKGLQAHDPLNKPIDPYAEINFKGQERMSKVAKNAGPDPIWNEKFKFL 60

Query: 59  -EFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN 117
            E+P S      HI F++MD + +    ++G+           ++       G+    S 
Sbjct: 61  VEYPGSGGDF--HILFKVMDHDAIDGDDYIGD---------VKIDVQNLLAEGVRKGWS- 108

Query: 118 DKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
                E+ P  Y VL     +KG+I +G  F
Sbjct: 109 -----ELPPRMYQVLAHKIYFKGEIEVGVFF 134

Binds to both sense and antisense RNA. Interacts with mesophyll plasmodesmata to mediate its own cell-to-cell transport and potentiate RNA trafficking.

Cucurbita maxima (taxid: 3661)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
255541594	751	pentatricopeptide repeat-containing prot	0.900	0.181	0.609	9e-45
356506222	217	PREDICTED: elicitor-responsive protein 3	0.900	0.626	0.589	1e-40
186511394	202	Calcium-dependent lipid-binding (CaLB do	0.900	0.673	0.556	5e-40
297810133	204	hypothetical protein ARALYDRAFT_327726 [	0.900	0.666	0.556	7e-40
359489798	804	PREDICTED: pentatricopeptide repeat-cont	0.894	0.167	0.573	2e-39
147834193	826	hypothetical protein VITISV_040403 [Viti	0.596	0.108	0.523	1e-21
357143075	188	PREDICTED: uncharacterized protein LOC10	0.867	0.696	0.374	1e-19
242066448	204	hypothetical protein SORBIDRAFT_04g03248	0.880	0.651	0.386	1e-18
50251363	221	hypothetical protein [Oryza sativa Japon	0.894	0.610	0.331	1e-17
218191318	183	hypothetical protein OsI_08382 [Oryza sa	0.754	0.622	0.364	3e-15

>gi|255541594|ref|XP_002511861.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223549041|gb|EEF50530.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  184 bits (468), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 92/151 (60%), Positives = 110/151 (72%), Gaps = 15/151 (9%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
           MK GILEVLLV+AEGI+HTN+ G P+YYVI +CGN+ H SK S  K ++A WNEKF FEF
Sbjct: 564 MKKGILEVLLVHAEGIRHTNLIGRPAYYVITQCGNRVHESKVSSGKDQEACWNEKFRFEF 623

Query: 61  PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
           P+ DWK +TH+KFRIMD E  TD GFVGET+               YLGGII +  N K 
Sbjct: 624 PLIDWKRMTHLKFRIMDKEFFTDSGFVGETII--------------YLGGIIAEGIN-KG 668

Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN 151
           ++EVKPAPYNV+LEDDTYKG+I IG  FI+N
Sbjct: 669 ILEVKPAPYNVVLEDDTYKGEIKIGLNFIIN 699

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506222|ref|XP_003521886.1| PREDICTED: elicitor-responsive protein 3-like [Glycine max]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 103/151 (68%), Gaps = 15/151 (9%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
           MK GILE+LLVNA+GI H N+ GTPSYYV+  CG Q  RSK S  K E+  WNEKFIF+F
Sbjct: 1   MKTGILEILLVNAKGIAHPNLVGTPSYYVVIECGTQTQRSKVSSGKHEQPCWNEKFIFDF 60

Query: 61  PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
              D K  TH+K RIM TEL T GGFVGE               + Y+GGII++  ND+ 
Sbjct: 61  SPFDCKNSTHLKCRIMATELFTSGGFVGEA--------------KIYIGGIISE-GNDQG 105

Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN 151
            IE+KPA YNV+LEDDTYKGQI IGFKFI N
Sbjct: 106 YIEIKPAAYNVVLEDDTYKGQIKIGFKFIAN 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511394|ref|NP_001118904.1| Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana] gi|332656486|gb|AEE81886.1| Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 106/151 (70%), Gaps = 15/151 (9%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
           MK GILEV L++A GI HTN  GTP YYV+ +CG +E+RSK S    + A WN+KF+F+F
Sbjct: 1   MKRGILEVFLIDAHGITHTNFIGTPVYYVLLQCGTKEYRSKMSKGDNDNALWNQKFVFDF 60

Query: 61  PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
           PMS WK LT+IK RI+D EL  DGGFVGET+   IH           LGGIIT +  D+ 
Sbjct: 61  PMSQWKKLTYIKLRILDKELFNDGGFVGETI---IH-----------LGGIIT-EGRDRG 105

Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN 151
            IE+KPAPYNV+LEDDT+KG++ +G +FI  
Sbjct: 106 YIEIKPAPYNVVLEDDTFKGELKVGLRFIAT 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810133|ref|XP_002872950.1| hypothetical protein ARALYDRAFT_327726 [Arabidopsis lyrata subsp. lyrata] gi|297318787|gb|EFH49209.1| hypothetical protein ARALYDRAFT_327726 [Arabidopsis lyrata subsp. lyrata]

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 107/151 (70%), Gaps = 15/151 (9%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
           MK G+LEV LV+A GI HTN  G+P YYV+ +CG +E+RSK S    + A WN+KF+F+F
Sbjct: 1   MKRGLLEVFLVDAHGITHTNFIGSPVYYVLLQCGIKEYRSKMSKGDNDNALWNQKFVFDF 60

Query: 61  PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
           PMS WK LT+IKFRIMD EL  DGGFVGET+   IH           LGGIIT +  D+ 
Sbjct: 61  PMSQWKKLTYIKFRIMDKELFKDGGFVGETI---IH-----------LGGIIT-EGRDRG 105

Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN 151
            +E+KPAPYNV+LEDDT+KG++ +G +FI  
Sbjct: 106 YMEIKPAPYNVVLEDDTFKGELKVGLRFIAT 136

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489798|ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Vitis vinifera]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 100/150 (66%), Gaps = 15/150 (10%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
           M GGILEVLLV+AE IKH N FG P YYVI +CG Q HRSK S  K EK +WN KF+FEF
Sbjct: 565 MTGGILEVLLVSAEDIKHRNFFGKPKYYVIIQCGTQIHRSKISSGKDEKTYWNGKFMFEF 624

Query: 61  PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
           P S+WK  TH+K RIMD EL   GG +GET+               +LGGIIT +   K 
Sbjct: 625 PHSEWKNSTHLKLRIMDKELFRGGGLIGETII--------------HLGGIIT-EGYTKG 669

Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150
            +E+ PAPYNV+LEDDTYKG I +G KFI 
Sbjct: 670 FMELTPAPYNVVLEDDTYKGMIKVGLKFIA 699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 67/105 (63%), Gaps = 15/105 (14%)

Query: 46  KGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCR 105
           K EK +WN KF+FEFP S+WK  TH+K RIMD EL   GG +GET+              
Sbjct: 647 KDEKTYWNGKFMFEFPHSEWKNSTHLKLRIMDKELFRGGGLIGETII------------- 693

Query: 106 YYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150
            +LGGIIT+    K  +E+ PAPYNV+LEDDTYKG I +G KFI 
Sbjct: 694 -HLGGIITE-GYTKGFMELTPAPYNVVLEDDTYKGMIKVGLKFIA 736

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357143075|ref|XP_003572794.1| PREDICTED: uncharacterized protein LOC100841553 [Brachypodium distachyon]

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 16/147 (10%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF-PM 62
           G+LE+LLV+AEG+KH +  G   +YV  +CG     SK +  K  K WWNEKF F   P+
Sbjct: 6   GVLELLLVSAEGLKHAHHLGPQRHYVTIQCGELIRTSKITHGKHRKIWWNEKFRFPLSPV 65

Query: 63  SDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELI 122
               LL  +  +IM+ +  ++   VGET              R  +G II +   ++E +
Sbjct: 66  ECRGLLAEVTLKIMERDKFSEDSLVGET--------------RVNVGDIIRE-GIEREFL 110

Query: 123 EVKPAPYNVLLEDDTYKGQIVIGFKFI 149
           ++KP PYN++L+D TYKG++ +G KF+
Sbjct: 111 QMKPVPYNIVLQDGTYKGELKLGLKFL 137

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242066448|ref|XP_002454513.1| hypothetical protein SORBIDRAFT_04g032480 [Sorghum bicolor] gi|241934344|gb|EES07489.1| hypothetical protein SORBIDRAFT_04g032480 [Sorghum bicolor]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 17/150 (11%)

Query: 2   KGGILEVLLVNAEGIKHTNIFGTPS--YYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFE 59
           + G+LE+LLV+AEG+KH +     S  +YV   CG++   SK +  +G++ WWNEKF F 
Sbjct: 4   REGVLELLLVSAEGLKHAHHHPRRSKRHYVTIECGDKIVTSKITQGRGKRIWWNEKFRFA 63

Query: 60  FPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDK 119
              ++ K L  +K  IM+ +   +   VGET              + Y+G II++ S + 
Sbjct: 64  LSDTERKELEKVKLTIMEMDKFIEDTAVGET--------------KVYVGEIISEGS-EL 108

Query: 120 ELIEVKPAPYNVLLEDDTYKGQIVIGFKFI 149
           E +++KPA YNV+LED TYKG + +G KFI
Sbjct: 109 EFLQMKPAAYNVVLEDGTYKGVLKLGLKFI 138

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50251363|dbj|BAD28390.1| hypothetical protein [Oryza sativa Japonica Group] gi|125583175|gb|EAZ24106.1| hypothetical protein OsJ_07845 [Oryza sativa Japonica Group]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 43/178 (24%)

Query: 2   KGGILEVLLVNAEGIKHTN----------------------------IFGTPSYYVIARC 33
           K  ILE+LLV+AEG+KH +                              GT  +YV  + 
Sbjct: 4   KYSILELLLVSAEGLKHAHHLGLYSSPYLVSETLMLMTSDFAHWHGMFAGTQRHYVNIQF 63

Query: 34  GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
           G+Q   SK +  KG+K WWNEKF F     + K L  +  +IM+ +  ++   VGET   
Sbjct: 64  GDQIFTSKITQGKGKKVWWNEKFRFPLSSDECKELAKVTLKIMERDKFSEDSLVGET--- 120

Query: 94  YIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN 151
                      + ++G II++   ++E +++KPAPYNV+LED  YKG++ +G KF+ N
Sbjct: 121 -----------KVHVGDIISE-GIEREFLQMKPAPYNVVLEDGRYKGELKLGLKFLPN 166

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218191318|gb|EEC73745.1| hypothetical protein OsI_08382 [Oryza sativa Indica Group]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 15/129 (11%)

Query: 23  GTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82
           GT  +YV  + G+Q   SK +  KG+K WWNEKF F     + K L  +  +IM+ +  +
Sbjct: 15  GTQRHYVNIQFGDQIFTSKITQGKGKKVWWNEKFRFPLSSDECKELAKVTLKIMERDKFS 74

Query: 83  DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQI 142
           +   VGET              + ++G II++   ++E +++KPAPYNV+LED  YKG++
Sbjct: 75  EDSLVGET--------------KVHVGDIISE-GIEREFLQMKPAPYNVVLEDGRYKGEL 119

Query: 143 VIGFKFIVN 151
            +G KF+ N
Sbjct: 120 KLGLKFLPN 128

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:4515103319	202	AT4G00467 "AT4G00467" [Arabido	0.887	0.663	0.563	4.2e-40
TAIR|locus:2099946	156	AT3G55470 "AT3G55470" [Arabido	0.841	0.814	0.277	2e-08
TAIR|locus:2038461	147	AT1G63220 "AT1G63220" [Arabido	0.880	0.904	0.260	4.8e-07
TAIR|locus:2124321	247	AT4G34150 "AT4G34150" [Arabido	0.556	0.340	0.295	0.00022

TAIR|locus:4515103319 AT4G00467 "AT4G00467" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 84/149 (56%), Positives = 106/149 (71%)

Query:     1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
             MK GILEV L++A GI HTN  GTP YYV+ +CG +E+RSK S    + A WN+KF+F+F
Sbjct:     1 MKRGILEVFLIDAHGITHTNFIGTPVYYVLLQCGTKEYRSKMSKGDNDNALWNQKFVFDF 60

Query:    61 PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
             PMS WK LT+IK RI+D EL  DGGFVGET+   IH           LGGIIT+   D+ 
Sbjct:    61 PMSQWKKLTYIKLRILDKELFNDGGFVGETI---IH-----------LGGIITE-GRDRG 105

Query:   121 LIEVKPAPYNVLLEDDTYKGQIVIGFKFI 149
              IE+KPAPYNV+LEDDT+KG++ +G +FI
Sbjct:   106 YIEIKPAPYNVVLEDDTFKGELKVGLRFI 134

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099946 AT3G55470 "AT3G55470" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 43/155 (27%), Positives = 76/155 (49%)

Query:     1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVK---GEKAWWNEKFI 57
             M  GILEV L++ +G+K ++  G    YV  +   Q  +S  S+ K   G    WN+K  
Sbjct:     1 MAVGILEVSLISGKGLKRSDFLGKIDPYVEIQYKGQTRKS--SVAKEDGGRNPTWNDKLK 58

Query:    58 F--EFPMS--DWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT 113
             +  EFP S  D+KL+     ++MD +  +   F+GE     +H    V +        + 
Sbjct:    59 WRAEFPGSGADYKLIV----KVMDHDTFSSDDFIGEAT---VH----VKE--------LL 99

Query:   114 DQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
             +   +K   E++P  YN++  D ++ G+++IG  +
Sbjct:   100 EMGVEKGTAELRPTKYNIVDSDLSFVGELLIGVSY 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2038461 AT1G63220 "AT1G63220" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 38/146 (26%), Positives = 68/146 (46%)

Query:     1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
             M  G LEV+LV+A+G++  +       YV   C  Q+ +S  +   G    WNE FIF  
Sbjct:     1 MPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT- 59

Query:    61 PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSY--IHDQTSVNQCRYYLGGIITDQSND 118
              +S+    T +K +I D ++ T+   VGE       +  + S+    Y    ++ D+   
Sbjct:    60 -VSEGT--TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAY---NVVKDEEYK 113

Query:   119 KEL---IEVKPAPYNVL-LEDDTYKG 140
              E+   +  KP+      +++++Y G
Sbjct:   114 GEIWVALSFKPSENRSRGMDEESYGG 139

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124321 AT4G34150 "AT4G34150" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 0.00022, P = 0.00022
 Identities = 26/88 (29%), Positives = 43/88 (48%)

Query:     1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
             ++G ILEV +V  + +K T  F     YV+   G + HR++     G+ A + EKFIF  
Sbjct:     7 IQGQILEVTVVGCQKLKDTEWFSRQDPYVVLEYGGRSHRTRTCTDGGKNAVFQEKFIFTL 66

Query:    61 PMSDWKLLTHIKFRIMDTELLTDGGFVG 88
                    L  +K  + ++  L+   F+G
Sbjct:    67 IEG----LRDLKVAVWNSNTLSTDDFIG 90


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.140   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       151   0.00097  104 3  11 22  0.47    31
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  14.77u 0.11s 14.88t   Elapsed:  00:00:02
  Total cpu time:  14.77u 0.11s 14.88t   Elapsed:  00:00:03
  Start:  Mon May 20 17:33:11 2013   End:  Mon May 20 17:33:14 2013

GO:0009409 "response to cold" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0JBH9	ERG3_ORYSJ	No assigned EC number	0.3175	0.8079	0.8472	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT4G00467 unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- C2 membrane targeting protein (InterPro-IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro-IPR008973), C2 calcium-dependent membrane targeting (InterPro-IPR000008); BEST Arabidopsis thaliana protein match is- C2 domain-containing protein (TAIR-AT3G55470.2); Has 88 Blast hits to 88 proteins in 15 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 1 (source- NCB [...] (202 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	2e-45
pfam00168	85	pfam00168, C2, C2 domain	2e-07
smart00239	101	smart00239, C2, Protein kinase C conserved region	4e-06
cd00030	102	cd00030, C2, C2 domain	7e-06
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	4e-05
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.001

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score =  144 bits (365), Expect = 2e-45
 Identities = 52/139 (37%), Positives = 72/139 (51%), Gaps = 15/139 (10%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS 63
           G LEVLL++A+G++ T+  G    YVI +C  QE +SK +   G    WNEKF F     
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 64  DWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIE 123
            W   T +  RIMD +  +D  F+GE                 +L G+   +  +    E
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIGEATI--------------HLKGLFE-EGVEPGTAE 105

Query: 124 VKPAPYNVLLEDDTYKGQI 142
           + PA YNV+LEDDTYKG+I
Sbjct: 106 LVPAKYNVVLEDDTYKGEI 124

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 6  LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAW---WNEKFIFEFPM 62
          L V +++A+ +   ++ G    YV    G Q+  +K + V  +      WNE F FE  +
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVV-KNTLNPVWNETFTFEVTL 59

Query: 63 SDWKLLTHIKFRIMDTELLTDGGFVGETV 91
           +   L  ++  + D +      F+GE  
Sbjct: 60 PE---LAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 5  ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAW---WNEKFIFEFP 61
           L V +++A  +   +  G    YV           K + V  +      WNE F FE P
Sbjct: 1  TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVV-KNTLNPVWNETFEFEVP 59

Query: 62 MSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
            +   L  ++  + D +      F+G+    
Sbjct: 60 PPE---LAELEIEVYDKDRFGRDDFIGQVTIP 88

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 6  LEVLLVNAEGIKHTNIFGTPSYYVIARCGN-QEHRSKNSMVKGE---KAWWNEKFIFEFP 61
          L V ++ A  +   ++ G    YV    G  Q+ ++K  +VK        WNE F F   
Sbjct: 1  LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTK--VVKNTLNPV--WNETFEFPVL 56

Query: 62 MSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
            +      +   + D +  +   F+GE    
Sbjct: 57 DPESD---TLTVEVWDKDRFSKDDFLGEVEIP 85

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 19/119 (15%)

Query: 8   VLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEK-AWWNEKFIF-----EFP 61
           V + +AEG+   +  G    YVI +C  +  RS   + K      ++ + IF       P
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSP--VQKDTLSPEFDTQAIFYRKKPRSP 64

Query: 62  MSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
                    IK ++ ++ LL D      T+ +  +D          L     D + +  
Sbjct: 65  ---------IKIQVWNSNLLCDEFLGQATLSADPNDSQ--TLRTLPLRKRGRDAAGEVP 112

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 28 YVIARCGNQEHRSKNSMVKGEKA-WWNEKFIFEFPMSDWKLL-THIKFRIMDTELLTDGG 85
           V    G Q+  +  S+ KG    ++NE F F F  S  +L    IK  + D+  L    
Sbjct: 24 VVKVEVGGQKKYT--SVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDT 81

Query: 86 FVGETVF--SYIHDQ 98
           +G        ++DQ
Sbjct: 82 LIGSFKLDVGTVYDQ 96

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.96
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.94
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.94
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.93
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.93
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.93
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.93
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.92
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.92
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.92
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.92
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.92
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.92
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.92
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.91
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.91
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.91
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.91
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.91
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.91
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.9
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.9
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.9
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.9
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.9
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.89
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.89
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.89
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.89
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.89
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.89
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.88
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.88
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.88
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.88
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.88
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.88
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.88
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.88
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.88
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.87
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.87
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.87
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.86
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.86
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.86
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.86
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.86
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.86
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.86
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.86
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.86
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.86
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.85
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.85
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.85
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.85
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.85
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.84
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.84
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.84
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.84
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.83
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.83
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.83
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.82
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.82
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.82
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.82
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.82
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.81
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.81
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.8
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.8
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.8
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.8
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.8
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.79
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.79
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.79
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.79
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.79
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.79
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.78
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.78
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.78
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.78
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.78
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.77
PLN03008	868	Phospholipase D delta	99.77
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.77
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.76
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.76
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.75
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.71
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.68
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.58
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.56
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.55
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.54
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.53
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.52
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.51
PLN02223	537	phosphoinositide phospholipase C	99.47
PLN02952	599	phosphoinositide phospholipase C	99.4
PLN02270	808	phospholipase D alpha	99.39
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.38
PLN02230	598	phosphoinositide phospholipase C 4	99.35
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.33
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.3
PLN02222	581	phosphoinositide phospholipase C 2	99.29
PLN02228	567	Phosphoinositide phospholipase C	99.28
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.22
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.18
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.16
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.1
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.06
PLN02352	758	phospholipase D epsilon	98.91
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.77
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.71
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.62
PLN02964	644	phosphatidylserine decarboxylase	98.37
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.34
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.19
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.03
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.99
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.89
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.86
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.77
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.75
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.57
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.47
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.41
PF15627	156	CEP76-C2: CEP76 C2 domain	97.29
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	97.21
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.13
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	97.13
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.13
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	97.02
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.77
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.53
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.44
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.28
KOG1452	442	consensus Predicted Rho GTPase-activating protein	96.08
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	95.63
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	94.05
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	93.79
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	93.54
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	93.23
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	92.76
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	90.82
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	89.57
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	88.53
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	84.81
KOG0694	694	consensus Serine/threonine protein kinase [Signal	83.31

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.96  E-value=2.6e-28  Score=162.50  Aligned_cols=120  Identities=16%  Similarity=0.251  Sum_probs=101.4

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      .|+|+|+|++|++++..+ .|++||||++.+++++.+|++..+++.||+|||+|.|.+...    ...|.|+|||++.++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~----~~~l~~~V~d~d~~~   75 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG----VDSIYIEIFDERAFT   75 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC----CcEEEEEEEeCCCCc
Confidence            489999999999998887 789999999999999999998876689999999999998752    367999999999999


Q ss_pred             CCcccEEEEEeccccccccceeeeecCc-ccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           83 DGGFVGETVFSYIHDQTSVNQCRYYLGG-IITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      +|++||.+.              +++.. +...... ..|+.|.+..      .....|+|+++++|
T Consensus        76 ~dd~iG~~~--------------i~l~~~~~~g~~~-~~W~~L~~~~------~~~~~g~i~l~l~y  121 (121)
T cd04016          76 MDERIAWTH--------------ITIPESVFNGETL-DDWYSLSGKQ------GEDKEGMINLVFSY  121 (121)
T ss_pred             CCceEEEEE--------------EECchhccCCCCc-cccEeCcCcc------CCCCceEEEEEEeC
Confidence            999999999              99974 4433334 7888886532      33467999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.94  E-value=3.7e-26  Score=151.58  Aligned_cols=118  Identities=19%  Similarity=0.392  Sum_probs=100.3

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      |.|.|+|++|++|+..+..+.+||||++.++++..+|+++.+++.||.|||.|.|.+...   ....|.|+|||++..+ 
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~---~~~~l~i~v~d~~~~~-   76 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED---KKPILKVAVFDDDKRK-   76 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC---CCCEEEEEEEeCCCCC-
Confidence            689999999999999998999999999999988888888765579999999999998763   3478999999999876 


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      |++||++.              +++.++...... ..|+.|.        .+++..|+|.++++|
T Consensus        77 ~~~iG~~~--------------~~l~~~~~~~~~-~~w~~L~--------~~~~~~G~i~l~l~f  118 (118)
T cd08681          77 PDLIGDTE--------------VDLSPALKEGEF-DDWYELT--------LKGRYAGEVYLELTF  118 (118)
T ss_pred             CcceEEEE--------------EecHHHhhcCCC-CCcEEec--------cCCcEeeEEEEEEEC
Confidence            89999999              999988765444 5666553        355788999999987

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.94  E-value=6.6e-26  Score=151.69  Aligned_cols=124  Identities=42%  Similarity=0.722  Sum_probs=109.7

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      |.|.|+|++|++|+..+..+.+||||++.+.++..+|++.+.++.||.|||.|.|.+..........|.|+|||.+.+++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            68999999999999988888999999999998888888776458999999999999887521124689999999999999


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEE
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQI  142 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i  142 (151)
                      +++||++.              +++.++...+.. ++|+.|+|..|.+..+...++|||
T Consensus        81 d~~iG~~~--------------i~l~~l~~~~~~-~~~~~l~p~~~~~~~~~~~~~~~~  124 (124)
T cd04049          81 DDFIGEAT--------------IHLKGLFEEGVE-PGTAELVPAKYNVVLEDDTYKGEI  124 (124)
T ss_pred             CCeEEEEE--------------EEhHHhhhCCCC-cCceEeeccceEEEEeceEEEeEC
Confidence            99999999              999999887777 999999999999998877889986

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.93  E-value=4.9e-25  Score=147.95  Aligned_cols=122  Identities=21%  Similarity=0.362  Sum_probs=99.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCC--CccccceEEEEEEECCCCCC
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS--DWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~--~~~~~~~L~v~v~d~~~~~~   83 (151)
                      ++|+|++|++|+..+..|.+||||++.++.++.+|++.+ ++.||+|||+|.|.++..  +......|.|+|||++.+++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~-~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~   79 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL   79 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeec-CCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence            579999999999998888999999999999999998876 589999999999988762  00135689999999999999


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccc--cCCCcceeeeeeccccceecCCCccceEEEEEEE
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIIT--DQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFK  147 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~  147 (151)
                      |++||++.              ++++++..  .... ..|+.|.+...    ...+.+|+|.+.+.
T Consensus        80 d~~iG~~~--------------i~l~~l~~~~~~~~-~~W~~L~~~~~----~~~~~~Gei~l~~~  126 (126)
T cd08682          80 DKFLGQVS--------------IPLNDLDEDKGRRR-TRWFKLESKPG----KDDKERGEIEVDIQ  126 (126)
T ss_pred             CceeEEEE--------------EEHHHhhccCCCcc-cEEEECcCCCC----CCccccceEEEEeC
Confidence            99999999              99998863  2233 67888765432    24567899999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.93  E-value=8.4e-25  Score=146.97  Aligned_cols=125  Identities=16%  Similarity=0.179  Sum_probs=101.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC-C
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT-D   83 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~-~   83 (151)
                      .|.|+|++|++|+..+..+.+||||++.+++++++|++.+ ++.||.|||.|.|.+.....+....|.|+|||++.++ +
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~   79 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKP-KDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR   79 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEc-CCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence            4899999999999998888999999999999999998875 6999999999999987533112467999999999887 8


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      +++||++.              ++++++...+.....|+.|+...     ..++.+|+|.+.+.|+
T Consensus        80 d~~lG~v~--------------i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~  126 (127)
T cd04022          80 RSFLGRVR--------------ISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCeeeEEE--------------EcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence            99999999              99988874333225677776331     2345789999999885

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.93  E-value=2e-25  Score=152.96  Aligned_cols=86  Identities=24%  Similarity=0.448  Sum_probs=81.1

Q ss_pred             CCCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCC
Q 047744            1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTEL   80 (151)
Q Consensus         1 m~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~   80 (151)
                      |..|.|+|.|.+|.+|..+|+.+++||||++++++++.+|+++. +++||+|||.|.|.+..    ....|.++|||+|.
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~-~n~NPeWNe~ltf~v~d----~~~~lkv~VyD~D~   77 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVY-KNLNPEWNEELTFTVKD----PNTPLKVTVYDKDT   77 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeec-CCCCCcccceEEEEecC----CCceEEEEEEeCCC
Confidence            57899999999999999999879999999999999999999775 79999999999999998    45899999999999


Q ss_pred             CCCCcccEEEE
Q 047744           81 LTDGGFVGETV   91 (151)
Q Consensus        81 ~~~d~~iG~~~   91 (151)
                      +++|||||.++
T Consensus        78 fs~dD~mG~A~   88 (168)
T KOG1030|consen   78 FSSDDFMGEAT   88 (168)
T ss_pred             CCcccccceee
Confidence            99999999999

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.93  E-value=1.5e-24  Score=144.50  Aligned_cols=120  Identities=18%  Similarity=0.266  Sum_probs=100.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      .|+|+|++|++|+..+..+.+||||++.+.+ ...+|++.+ ++.||.|||.|.|.+..    ....|.|+|||++.+++
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~----~~~~l~~~v~D~d~~~~   75 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY-KNLNPVWDEKFTLPIED----VTQPLYIKVFDYDRGLT   75 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeecc-CCCCCccceeEEEEecC----CCCeEEEEEEeCCCCCC
Confidence            3899999999999999889999999999987 456787765 69999999999999865    34789999999999999


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      |++||++.              +++.++...... +.|+.|.+..      ..+..|+|.+.++|.|
T Consensus        76 ~~~iG~~~--------------~~l~~l~~~~~~-~~~~~L~~~~------~~~~~G~l~l~~~~~~  121 (121)
T cd04042          76 DDFMGSAF--------------VDLSTLELNKPT-EVKLKLEDPN------SDEDLGYISLVVTLTP  121 (121)
T ss_pred             CcceEEEE--------------EEHHHcCCCCCe-EEEEECCCCC------CccCceEEEEEEEECC
Confidence            99999999              999998865554 5666664331      2467899999999986

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.92  E-value=1.1e-23  Score=141.34  Aligned_cols=119  Identities=23%  Similarity=0.476  Sum_probs=100.1

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECC--eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN--QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      |.|+|++|++|+.  ..+.+||||++.++.  ++.+|++.+ ++.||.|||.|.|.+..    ....|.|+|||++..++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~----~~~~l~~~v~d~~~~~~   73 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQK-NTSNPFWDEHFLFELSP----NSKELLFEVYDNGKKSD   73 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEe-cCCCCccCceEEEEeCC----CCCEEEEEEEECCCCCC
Confidence            6799999999987  568999999999973  557888776 68999999999999864    34789999999999999


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      |++||++.              +++.++...... ..|+.|++...    ......|+|.+++.|++
T Consensus        74 ~~~lG~~~--------------i~l~~l~~~~~~-~~~~~L~~~~~----~~~~~~G~l~l~~~~~~  121 (126)
T cd08678          74 SKFLGLAI--------------VPFDELRKNPSG-RQIFPLQGRPY----EGDSVSGSITVEFLFME  121 (126)
T ss_pred             CceEEEEE--------------EeHHHhccCCce-eEEEEecCCCC----CCCCcceEEEEEEEEec
Confidence            99999999              999999876665 67888876643    24567999999999975

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.92  E-value=1.3e-23  Score=139.36  Aligned_cols=119  Identities=19%  Similarity=0.319  Sum_probs=99.8

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      |.|.|+|++|++|+..+..+.+||||++.+.+...+|++++ ++.||.|||+|.|.+..    ....|.|+|||++..++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~~~~~~----~~~~l~~~v~d~~~~~~   75 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTFPIKD----IHDVLEVTVYDEDKDKK   75 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceec-CCcCCccCcEEEEEecC----cCCEEEEEEEECCCCCC
Confidence            78999999999999999888999999999998888898876 58999999999998864    34789999999998889


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      +++||++.              +++.++....   ..|+.|.+..     ..++.+|+|.+++.|+
T Consensus        76 ~~~iG~~~--------------~~l~~~~~~~---~~~~~l~~~~-----~~~~~~G~i~l~~~~~  119 (119)
T cd08377          76 PEFLGKVA--------------IPLLSIKNGE---RKWYALKDKK-----LRTRAKGSILLEMDVI  119 (119)
T ss_pred             CceeeEEE--------------EEHHHCCCCC---ceEEECcccC-----CCCceeeEEEEEEEeC
Confidence            99999999              8888875322   4576665432     2455799999999885

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.92  E-value=6.9e-24  Score=142.08  Aligned_cols=116  Identities=17%  Similarity=0.269  Sum_probs=96.7

Q ss_pred             EEEEEEEEeeC---CCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            5 ILEVLLVNAEG---IKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         5 ~L~V~v~~a~~---L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      .|+|+|++|++   |+..+..|.+||||++++++++.+|+++. ++.||+|||+|.|.+...    ...|.|+|||++.+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~-~~~nP~WnE~f~f~v~~~----~~~l~v~V~d~d~~   75 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVE-DSSNPRWNEQYTWPVYDP----CTVLTVGVFDNSQS   75 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCccc-CCCCCcceeEEEEEecCC----CCEEEEEEEECCCc
Confidence            38999999999   88889899999999999999999998886 589999999999998763    35899999999887


Q ss_pred             C------CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEE
Q 047744           82 T------DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVI  144 (151)
Q Consensus        82 ~------~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~  144 (151)
                      +      +|++||++.              ++++.+..+... ..|+.|.+...    ...+..|+|..
T Consensus        76 ~~~~~~~~dd~lG~~~--------------i~l~~l~~~~~~-~~~~~L~~~~~----~~~~~~g~l~~  125 (126)
T cd08379          76 HWKEAVQPDVLIGKVR--------------IRLSTLEDDRVY-AHSYPLLSLNP----SGVKKMGELEC  125 (126)
T ss_pred             cccccCCCCceEEEEE--------------EEHHHccCCCEE-eeEEEeEeCCC----CCccCCcEEEe
Confidence            3      899999999              999998876655 67887764431    23556788864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.92  E-value=1.1e-23  Score=142.36  Aligned_cols=121  Identities=21%  Similarity=0.365  Sum_probs=97.1

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-------eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-------EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .|+|+|++|++|+..+..+.+||||++.+.+.       ..+|++.+ ++.||.|||+|.|.+..    ....|.|+|||
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~----~~~~l~~~v~d   75 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KTLNPKWNEEFFFRVNP----REHRLLFEVFD   75 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEc-CCCCCcEeeEEEEEEcC----CCCEEEEEEEE
Confidence            48999999999999998889999999998654       45777765 69999999999999875    24679999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCC-----cceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-----DKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      ++.++++++||++.              +++.++......     ...|+.|++..     ..++.+|+|++++.|+
T Consensus        76 ~~~~~~~~~iG~~~--------------i~l~~l~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~G~l~~~~~~~  133 (133)
T cd04033          76 ENRLTRDDFLGQVE--------------VPLNNLPTETPGNERRYTFKDYLLRPRS-----SKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCCCCCCeeEEEE--------------EEHHHCCCcCccccccccchheeeeecC-----CCCcceeEEEEEEeeC
Confidence            99999999999999              998888754322     13455554321     2456799999999984

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.92  E-value=1.2e-23  Score=143.01  Aligned_cols=123  Identities=22%  Similarity=0.343  Sum_probs=99.4

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      ..|.|+|+|++|++|+..+..+.+||||++.++++..+|++++ ++.||.|||+|.|.+...   ....|.|+|||++.+
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~-~t~nP~Wne~f~f~v~~~---~~~~l~i~V~D~d~~   88 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVS-DTLNPKWNSSMQFFVKDL---EQDVLCITVFDRDFF   88 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccC-CCCCCccCceEEEEecCc---cCCEEEEEEEECCCC
Confidence            3589999999999999999889999999999999999998876 699999999999998653   346899999999999


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      ++|++||++.              +++.++........+...   .+   ....+..+|+|.+++.|
T Consensus        89 ~~d~~lG~~~--------------i~l~~l~~~~~~~~~~~~---~~---~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          89 SPDDFLGRTE--------------IRVADILKETKESKGPIT---KR---LLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCeeEEEE--------------EEHHHhccccccCCCcEE---EE---eccccccceeEEEEEEe
Confidence            9999999999              999888753222111111   11   11256788999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.92  E-value=1.6e-23  Score=139.75  Aligned_cols=118  Identities=17%  Similarity=0.339  Sum_probs=98.8

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            6 LEVLLVNAEGIKHTN-IFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         6 L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      |.|+|++|++|+..+ ..+.+||||.+.++.+ ..+|++.+ ++.||.|||+|.|.++.    ....|.|.|||++.+++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~-kt~~P~WnE~F~f~v~~----~~~~l~~~v~d~~~~~~   76 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVE-KSLCPFFGEDFYFEIPR----TFRHLSFYIYDRDVLRR   76 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEE-CCCCCccCCeEEEEcCC----CCCEEEEEEEECCCCCC
Confidence            789999999999874 3567899999999765 46777765 69999999999999975    34689999999999999


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      |++||.+.              ++++++...+.. ..|+.|+|..     ..++.+|+|+++++|
T Consensus        77 ~~~iG~~~--------------i~l~~l~~~~~~-~~w~~L~~~~-----~~~~~~G~i~l~~~~  121 (121)
T cd08401          77 DSVIGKVA--------------IKKEDLHKYYGK-DTWFPLQPVD-----ADSEVQGKVHLELRL  121 (121)
T ss_pred             CceEEEEE--------------EEHHHccCCCCc-EeeEEEEccC-----CCCcccEEEEEEEEC
Confidence            99999999              999998766655 8899998763     244568999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.92  E-value=1.3e-23  Score=140.30  Aligned_cols=121  Identities=21%  Similarity=0.345  Sum_probs=98.9

Q ss_pred             CcEEEEEEEEeeCCCCCCC-CCCCCEEEEEEECC--eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744            3 GGILEVLLVNAEGIKHTNI-FGTPSYYVIARCGN--QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE   79 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~--~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~   79 (151)
                      .|.|+|+|++|++|+..+. .+.+||||++.+.+  +..+|+++. ++.||.|||.|.|.+..    ..+.|.|+|||++
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~-~~~~P~Wne~~~~~v~~----~~~~l~~~v~d~~   75 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKK-DTSNPVWNETKYILVNS----LTEPLNLTVYDFN   75 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeec-CCCCCcceEEEEEEeCC----CCCEEEEEEEecC
Confidence            4889999999999997654 45689999999987  677888775 69999999999998874    4578999999999


Q ss_pred             CCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      ..++|++||++.              +++.++...+.. +.+      ++.+ ..+++.+|+|.++++|.|
T Consensus        76 ~~~~d~~iG~~~--------------~~l~~l~~~~~~-~~~------~~~~-~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          76 DKRKDKLIGTAE--------------FDLSSLLQNPEQ-ENL------TKNL-LRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCCCCceeEEEE--------------EEHHHhccCccc-cCc------chhh-hcCCccceEEEEEEEeCC
Confidence            988999999999              999998865543 211      1112 247788999999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.91  E-value=1.7e-23  Score=144.40  Aligned_cols=128  Identities=17%  Similarity=0.250  Sum_probs=100.8

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG   84 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d   84 (151)
                      .|.|+|++|++|+..+..|.+||||++.++++..+|++...++.||+|||.|.|.+...   ....|.|+|||++.+++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~---~~~~l~v~V~d~~~~~~d   77 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP---FEDHLILSVEDRVGPNKD   77 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc---cCCeEEEEEEEecCCCCC
Confidence            38999999999999999999999999999999999998865579999999999988653   246899999999988899


Q ss_pred             cccEEEEEeccccccccceeeeecCccccc---CCCcceeeeeeccccce-ecCCCccceEEEEEEEEE
Q 047744           85 GFVGETVFSYIHDQTSVNQCRYYLGGIITD---QSNDKELIEVKPAPYNV-LLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~---~~~~~~~~~l~~~~~~~-~~~~~~~~G~i~~~~~~~  149 (151)
                      ++||++.              ++++++...   +.....|+.|....-.. -....+.+|+|.|.+.|.
T Consensus        78 d~lG~v~--------------i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          78 EPLGRAV--------------IPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             CeEEEEE--------------EEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            9999999              888887542   12125677765432100 001246779999999885

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.91  E-value=2.1e-23  Score=139.39  Aligned_cols=122  Identities=18%  Similarity=0.277  Sum_probs=102.8

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG   84 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d   84 (151)
                      +|+|+|++|++|+..+..+.+||||++.++++..+|++++ ++.||.|||+|.|.+...   ....|.|+|||++.++++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~---~~~~l~~~v~d~~~~~~~   76 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVK-KSCYPRWNEVFEFELMEG---ADSPLSVEVWDWDLVSKN   76 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeec-CCCCCccCcEEEEEcCCC---CCCEEEEEEEECCCCCCC
Confidence            4899999999999998888899999999998888998876 689999999999998763   246899999999999999


Q ss_pred             cccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEE
Q 047744           85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGF  146 (151)
Q Consensus        85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~  146 (151)
                      ++||++.              +++.++...+.. ..|+.|.|..-. ....++..|.|.+.+
T Consensus        77 ~~iG~~~--------------~~l~~l~~~~~~-~~w~~L~~~~~~-~~~~~~~~G~l~~~~  122 (123)
T cd04025          77 DFLGKVV--------------FSIQTLQQAKQE-EGWFRLLPDPRA-EEESGGNLGSLRLKV  122 (123)
T ss_pred             cEeEEEE--------------EEHHHcccCCCC-CCEEECCCCCCC-CccccCceEEEEEEe
Confidence            9999999              998888765555 789988876422 223577889999876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.91  E-value=2.8e-23  Score=139.41  Aligned_cols=123  Identities=20%  Similarity=0.315  Sum_probs=101.9

Q ss_pred             cEEEEEEEEeeCCCCCCC--CCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            4 GILEVLLVNAEGIKHTNI--FGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      |.|+|+|++|++|+..+.  .+.+||||++.++.+..+|++++ ++.||.|||.|.|.+...   ....|.|+|||++.+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~~P~Wne~f~~~~~~~---~~~~l~i~v~d~~~~   76 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIFSA---QNQLLKLILWDKDRF   76 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceec-CCcCCccCCcEEEEecCC---CCCEEEEEEEECCCC
Confidence            789999999999999887  78899999999998889998876 699999999999988752   357899999999998


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCccccc---CCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD---QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      +++++||++.              +++.++...   +.. ..|+.|.+..-.   ......|+|.+.++|
T Consensus        77 ~~~~~lG~~~--------------i~l~~~~~~~~~~~~-~~w~~L~~~~~~---~~~~~~G~i~l~~~~  128 (128)
T cd04024          77 AGKDYLGEFD--------------IALEEVFADGKTGQS-DKWITLKSTRPG---KTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCCcceEEE--------------EEHHHhhcccccCcc-ceeEEccCcccC---ccccccceEEEEEEC
Confidence            8999999999              999888732   222 577777765321   234578999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.91  E-value=7.4e-24  Score=141.90  Aligned_cols=123  Identities=17%  Similarity=0.271  Sum_probs=101.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-eeeEEeeeeCCCCCCeeceEEEEEEeCCCc-cccceEEEEEEECCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-QEHRSKNSMVKGEKAWWNEKFIFEFPMSDW-KLLTHIKFRIMDTELLT   82 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~~~nP~wne~f~f~v~~~~~-~~~~~L~v~v~d~~~~~   82 (151)
                      +|+|+|++|++|+..+..+.+||||++.+.+ ++.+|++.++++.||.|||.|.|.+..... .....|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            5899999999999998889999999999987 778888776568999999999999876410 02578999999999888


Q ss_pred             CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEE
Q 047744           83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVI  144 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~  144 (151)
                      .|++||++.              +++.++...... ++  .+.+.+|.+..+.|+.+|+|.+
T Consensus        81 ~~~~lG~~~--------------i~l~~l~~~~~~-~~--~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVR--------------VPLKDLLDGASP-AG--ELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEE--------------EEHHHhhcccCC-CC--cceeEEEEeECCCCCcCeEEeC
Confidence            999999999              999999865543 22  3456778888778999999874

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.91  E-value=9e-23  Score=136.99  Aligned_cols=124  Identities=17%  Similarity=0.201  Sum_probs=100.7

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      +...|+|+|++|++|+..+..|.+||||++.++++..+|++.+ ++.||.|||.|.|.+..    ....|.|+|||++.+
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~----~~~~l~i~V~d~~~~   75 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQK-DTLSPEFDTQAIFYRKK----PRSPIKIQVWNSNLL   75 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccC-CCCCCcccceEEEEecC----CCCEEEEEEEECCCC
Confidence            4578999999999999999889999999999999999998875 68999999999998765    357899999999876


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEeC
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN  151 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~~  151 (151)
                      + |++||+++              +++.+...  .. ..++.|+...   ....++..|+|.+.+.+.+|
T Consensus        76 ~-d~~lG~~~--------------~~l~~~~~--~~-~~~~~l~~~~---~~~~~~~~G~i~~~~~~~~~  124 (126)
T cd04046          76 C-DEFLGQAT--------------LSADPNDS--QT-LRTLPLRKRG---RDAAGEVPGTISVKVTSSDD  124 (126)
T ss_pred             C-CCceEEEE--------------EecccCCC--cC-ceEEEcccCC---CCCCCCCCCEEEEEEEEccc
Confidence            4 89999999              88876532  22 3455554222   23578889999999998765

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.91  E-value=5.5e-23  Score=135.94  Aligned_cols=115  Identities=18%  Similarity=0.295  Sum_probs=97.0

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG   84 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d   84 (151)
                      +|+|+|++|++|+..+..+.+||||++.++++..+|++.+ ++.||.|||+|.|.+...   ....|.|+|||++.+++|
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~---~~~~l~v~v~d~~~~~~~   76 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCS-KTLNPQWLEQFDLHLFDD---QSQILEIEVWDKDTGKKD   76 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEeccccc-CCCCCceeEEEEEEecCC---CCCEEEEEEEECCCCCCC
Confidence            4789999999999999888999999999998888998775 699999999999988763   357899999999999999


Q ss_pred             cccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      ++||++.              ++++++...... ..|+.|.+           .+|+|.+.+.|+
T Consensus        77 ~~iG~~~--------------~~l~~l~~~~~~-~~w~~L~~-----------~~G~~~~~~~~~  115 (116)
T cd08376          77 EFIGRCE--------------IDLSALPREQTH-SLELELED-----------GEGSLLLLLTLT  115 (116)
T ss_pred             CeEEEEE--------------EeHHHCCCCCce-EEEEEccC-----------CCcEEEEEEEec
Confidence            9999999              998888765544 55665532           159999988874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.90  E-value=1.6e-23  Score=138.11  Aligned_cols=93  Identities=16%  Similarity=0.256  Sum_probs=78.5

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      ..+.|.|+|++|++|+   ..+.+||||++.+..    .+++|++.+ +++||+|||+|.|.++..+ +....|.|+|||
T Consensus        12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~r-ktlnPvfnE~f~F~v~~~~-l~~~tL~~~V~d   86 (118)
T cd08677          12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKK-LALHTQWEEELVFPLPEEE-SLDGTLTLTLRC   86 (118)
T ss_pred             cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceec-CCCCCccccEEEEeCCHHH-hCCcEEEEEEEe
Confidence            4689999999999998   246699999999853    355666654 7999999999999988744 467889999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccc
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT  113 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~  113 (151)
                      +|+++++++||++.              ++++++..
T Consensus        87 ~Drfs~~d~IG~v~--------------l~l~~~~~  108 (118)
T cd08677          87 CDRFSRHSTLGELR--------------LKLADVSM  108 (118)
T ss_pred             CCCCCCCceEEEEE--------------EccccccC
Confidence            99999999999999              88887643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.90  E-value=2e-22  Score=135.37  Aligned_cols=120  Identities=16%  Similarity=0.254  Sum_probs=97.6

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      ..|+|+|++|++|+..+   .+||||++.+++.. .+|++ + ++.||.|||.|.|.+...+   ...+.|.|||++.++
T Consensus         4 ~~L~V~Vi~A~~L~~~~---~~DPYv~v~l~~~~~~kT~v-~-~~~nP~WnE~f~f~~~~~~---~~~l~v~v~d~~~~~   75 (126)
T cd08400           4 RSLQLNVLEAHKLPVKH---VPHPYCVISLNEVKVARTKV-R-EGPNPVWSEEFVFDDLPPD---VNSFTISLSNKAKRS   75 (126)
T ss_pred             eEEEEEEEEeeCCCCCC---CCCeeEEEEECCEeEEEeec-C-CCCCCccCCEEEEecCCCC---cCEEEEEEEECCCCC
Confidence            57999999999998753   68999999998754 56665 4 4899999999999865432   257889999999999


Q ss_pred             CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      +|++||++.              +++..+...+.. +.|+.|.+..-    ...+..|+|+++++|.+
T Consensus        76 ~d~~iG~v~--------------i~l~~l~~~~~~-~~W~~L~~~~~----~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          76 KDSEIAEVT--------------VQLSKLQNGQET-DEWYPLSSASP----LKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCCeEEEEE--------------EEHhHccCCCcc-cEeEEcccCCC----CCCCcCcEEEEEEEEEc
Confidence            999999999              999988765555 78988887531    24567799999999975

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.90  E-value=7.1e-23  Score=136.61  Aligned_cols=114  Identities=18%  Similarity=0.275  Sum_probs=93.2

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCc
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGG   85 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~   85 (151)
                      |.|+|++|++|+..    .+||||++.++++..+|++++ ++.||.|||+|.|.+...   ....|.|+|||++.. +++
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~-~t~nP~Wne~F~f~~~~~---~~~~L~~~v~d~d~~-~~~   72 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIE-RTSNPEWNQVFAFSKDRL---QGSTLEVSVWDKDKA-KDD   72 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccC-CCCCCccceEEEEEcCCC---cCCEEEEEEEeCCCC-cCc
Confidence            88999999999887    689999999998888998875 689999999999987653   357899999999977 789


Q ss_pred             ccEEEEEeccccccccceeeeecCcccccCC----CcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           86 FVGETVFSYIHDQTSVNQCRYYLGGIITDQS----NDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        86 ~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      +||++.              ++++++...+.    ....|+.|.+..      ..+.+|+|.++++|
T Consensus        73 ~lG~~~--------------i~l~~l~~~~~~~~~~~~~W~~L~~~~------~~~~~G~i~l~~~~  119 (121)
T cd08378          73 FLGGVC--------------FDLSEVPTRVPPDSPLAPQWYRLEDKK------GGRVGGELMLAVWF  119 (121)
T ss_pred             eeeeEE--------------EEhHhCcCCCCCCCCCCcceEEccCCC------CCccceEEEEEEEe
Confidence            999999              88888864332    114677666542      24688999999998

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.90  E-value=3.8e-23  Score=138.07  Aligned_cols=105  Identities=15%  Similarity=0.196  Sum_probs=85.8

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|.|++|++|+..+ .+.+||||++.+.     ..+++|++++ ++.||.|||+|.|++...+.+....|.|+|||
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d   89 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVR-KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS   89 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccC-CCCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence            478999999999999999 8899999999985     2456788775 68999999999998732222345789999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                      ++.++++++||++.              ++|+++...+.. ..|+.|
T Consensus        90 ~d~~~~~~~lG~~~--------------i~l~~l~~~~~~-~~W~~L  121 (122)
T cd08381          90 HDSLVENEFLGGVC--------------IPLKKLDLSQET-EKWYPL  121 (122)
T ss_pred             CCCCcCCcEEEEEE--------------EeccccccCCCc-cceEEC
Confidence            99999999999999              999988755444 566654

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.90  E-value=3.4e-22  Score=133.30  Aligned_cols=119  Identities=17%  Similarity=0.353  Sum_probs=97.8

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      .|.|+|++|++|+..+..|.+||||++.+++.. .+|++++ ++.||.|||.|.|.+..    ....|.|+|||++.+++
T Consensus         1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~----~~~~l~v~v~d~~~~~~   75 (121)
T cd04054           1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVW-KTLNPFWGEEYTVHLPP----GFHTVSFYVLDEDTLSR   75 (121)
T ss_pred             CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEc-CCCCCcccceEEEeeCC----CCCEEEEEEEECCCCCC
Confidence            388999999999999999999999999998764 5787765 68999999999998865    34789999999999999


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEE
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFK  147 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~  147 (151)
                      |++||++.              +++..+...+.....|+.|++..     ..++..|+|.+.++
T Consensus        76 d~~iG~~~--------------~~~~~~~~~~~~~~~W~~L~~~~-----~~~~~~G~i~l~~~  120 (121)
T cd04054          76 DDVIGKVS--------------LTREVISAHPRGIDGWMNLTEVD-----PDEEVQGEIHLELS  120 (121)
T ss_pred             CCEEEEEE--------------EcHHHhccCCCCCCcEEECeeeC-----CCCccccEEEEEEE
Confidence            99999999              88777764332226788887652     35567899998875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.89  E-value=1.7e-22  Score=134.30  Aligned_cols=106  Identities=20%  Similarity=0.155  Sum_probs=85.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-------eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-------QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .|+|+|++|++|+..+ .|.+||||++.+.+       ++.+|++. .++.||+|||+|.|.+...+.+....|.|.|||
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~-~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D   78 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSK-NNNWSPKYNETFQFILGNEDDPESYELHICVKD   78 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEe-cCCCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence            4899999999999887 48899999999732       23456665 578999999999999986432345679999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      ++..++|++||++.              +++.++...+.. ..|+.|.+.
T Consensus        79 ~d~~~~dd~IG~~~--------------l~l~~~~~~~~~-~~w~~L~~~  113 (120)
T cd08395          79 YCFARDDRLVGVTV--------------LQLRDIAQAGSC-ACWLPLGRR  113 (120)
T ss_pred             ecccCCCCEEEEEE--------------EEHHHCcCCCcE-EEEEECcCc
Confidence            99878899999999              999999876665 677777543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.89  E-value=4.6e-22  Score=132.20  Aligned_cols=115  Identities=19%  Similarity=0.330  Sum_probs=96.0

Q ss_pred             cEEEEEEEEeeCCCCCCC------CCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            4 GILEVLLVNAEGIKHTNI------FGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~------~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      |.|+|+|++|++|+..+.      .+.+||||++.++++..+|++++ ++.||.|||.|.|.+...   ....|.|+|||
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~~P~W~e~f~~~v~~~---~~~~l~i~v~d   76 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIK-ENLNPKWNEVYEAVVDEV---PGQELEIELFD   76 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccC-CCCCCcccceEEEEeCCC---CCCEEEEEEEe
Confidence            689999999999998775      25799999999998888998875 699999999999988653   35789999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      ++.. ++++||++.              +++.++...+.. ..|+.|++          ..+|+|.+.+.|
T Consensus        77 ~~~~-~~~~iG~~~--------------i~l~~l~~~~~~-~~w~~L~~----------~~~G~~~~~~~~  121 (121)
T cd08391          77 EDPD-KDDFLGRLS--------------IDLGSVEKKGFI-DEWLPLED----------VKSGRLHLKLEW  121 (121)
T ss_pred             cCCC-CCCcEEEEE--------------EEHHHhcccCcc-ceEEECcC----------CCCceEEEEEeC
Confidence            9987 889999999              999888765554 67776642          257999998865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.89  E-value=5e-22  Score=132.02  Aligned_cols=113  Identities=19%  Similarity=0.377  Sum_probs=91.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      |.|+|++|++|+..+..+.+||||++.+.+   ...+|++++ ++.||.|||+|.|.+...   ....|.|+|||++.+ 
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~-~t~nP~Wne~f~f~i~~~---~~~~l~v~v~d~d~~-   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIK-NSINPVWNETFEFRIQSQ---VKNVLELTVMDEDYV-   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceec-CCCCCccceEEEEEeCcc---cCCEEEEEEEECCCC-
Confidence            789999999999998888999999999853   457888775 689999999999988763   346799999999988 


Q ss_pred             CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      +|++||++.              ++++++...... ..|+.|.+          ..+|+|.+++.+
T Consensus        77 ~~~~iG~~~--------------~~l~~l~~g~~~-~~~~~L~~----------~~~g~l~~~~~~  117 (119)
T cd04036          77 MDDHLGTVL--------------FDVSKLKLGEKV-RVTFSLNP----------QGKEELEVEFLL  117 (119)
T ss_pred             CCcccEEEE--------------EEHHHCCCCCcE-EEEEECCC----------CCCceEEEEEEe
Confidence            899999999              999888755444 55655542          247888888765

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.89  E-value=4e-22  Score=130.46  Aligned_cols=96  Identities=14%  Similarity=0.219  Sum_probs=82.3

Q ss_pred             cEEEEEEEEeeCCCCCCCC----CCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744            4 GILEVLLVNAEGIKHTNIF----GTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE   79 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~----~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~   79 (151)
                      |+|.|+|++|++|+..+..    +.+||||++.++.+..+|++++ ++.||+|||.|.|.+...+  ....|.|+|||++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~-~t~nPvWne~f~f~v~~~~--~~~~L~~~V~D~d   77 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRR-HTLNPVFNERLAFEVYPHE--KNFDIQFKVLDKD   77 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeec-CCCCCcccceEEEEEeCcc--CCCEEEEEEEECC
Confidence            7899999999999987643    3489999999988888998886 6899999999999987643  3468999999999


Q ss_pred             CCCCCcccEEEEEeccccccccceeeeecCcccccCC
Q 047744           80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQS  116 (151)
Q Consensus        80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~  116 (151)
                      .+++|++||++.              ++|+++.....
T Consensus        78 ~~~~dd~IG~~~--------------l~L~~l~~~~~  100 (108)
T cd04039          78 KFSFNDYVATGS--------------LSVQELLNAAP  100 (108)
T ss_pred             CCCCCcceEEEE--------------EEHHHHHhhCC
Confidence            999999999999              88888875443

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.89  E-value=1.7e-21  Score=132.24  Aligned_cols=123  Identities=13%  Similarity=0.197  Sum_probs=93.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCC----Ccc--ccceEEEEEEEC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS----DWK--LLTHIKFRIMDT   78 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~----~~~--~~~~L~v~v~d~   78 (151)
                      .|+|.|++|++|+..+..+.+||||++.+.++..+|++++ ++.||.|||.|.|.+...    +.+  ....|.|+|||+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            5899999999999999999999999999999989998875 699999999999974321    000  124689999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeee-cCccccc--CCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYY-LGGIITD--QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~-l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      +..++|++||++.              +. +..+...  ......|+.|       . ..+..+|+|.+++.+++
T Consensus        81 d~~~~d~~iG~~~--------------i~~~~~~~~~~~~~~~~~W~~L-------~-~~~~~~Geil~~~~~~~  133 (135)
T cd04017          81 DSVGKDEFLGRSV--------------AKPLVKLDLEEDFPPKLQWFPI-------Y-KGGQSAGELLAAFELIE  133 (135)
T ss_pred             cCCCCCccceEEE--------------eeeeeecccCCCCCCCceEEEe-------e-cCCCchhheeEEeEEEE
Confidence            9999999999998              52 2222211  1111344444       3 35668999999999986

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.89  E-value=1.7e-21  Score=135.49  Aligned_cols=122  Identities=15%  Similarity=0.311  Sum_probs=97.6

Q ss_pred             CcEEEEEEEEeeCCCCCCC------------------------------CCCCCEEEEEEECCee-eEEeeeeCCCCCCe
Q 047744            3 GGILEVLLVNAEGIKHTNI------------------------------FGTPSYYVIARCGNQE-HRSKNSMVKGEKAW   51 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~------------------------------~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~   51 (151)
                      .|+|+|+|.+|++|++.|.                              .|.+||||++.+++.+ .+|++.+ ++.||+
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~-~~~nP~   84 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIE-NSENPV   84 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeC-CCCCCc
Confidence            6999999999999998772                              3568999999998765 5888775 589999


Q ss_pred             eceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccce
Q 047744           52 WNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNV  131 (151)
Q Consensus        52 wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~  131 (151)
                      |||+|.|.+..    ..+.|.|.|||++.++ +++||++.              ++++++...... +.|+.|.....  
T Consensus        85 WnE~F~~~~~~----~~~~l~~~V~d~d~~~-~~~IG~~~--------------i~l~~l~~g~~~-~~w~~L~~~~~--  142 (158)
T cd04015          85 WNESFHIYCAH----YASHVEFTVKDNDVVG-AQLIGRAY--------------IPVEDLLSGEPV-EGWLPILDSNG--  142 (158)
T ss_pred             cceEEEEEccC----CCCEEEEEEEeCCCcC-CcEEEEEE--------------EEhHHccCCCCc-ceEEECcCCCC--
Confidence            99999998765    3468999999999875 57999999              999998865554 77877754321  


Q ss_pred             ecCCCccceEEEEEEEEE
Q 047744          132 LLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus       132 ~~~~~~~~G~i~~~~~~~  149 (151)
                        ...+..|+|.++++|+
T Consensus       143 --~~~~~~~~l~v~~~f~  158 (158)
T cd04015         143 --KPPKPGAKIRVSLQFT  158 (158)
T ss_pred             --CCCCCCCEEEEEEEEC
Confidence              1223468999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.88  E-value=5.8e-22  Score=131.94  Aligned_cols=100  Identities=18%  Similarity=0.250  Sum_probs=80.8

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      +.|.|+|++|++|+..+   ..||||++++++++.+|++.+  +.||.|||.|.|.+...    ...|.|+|||++.+ +
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~--~~nP~WnE~F~F~~~~~----~~~L~v~V~dkd~~-~   71 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVR--GSQPCWEQDFMFEINRL----DLGLVIELWNKGLI-W   71 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECC--CCCCceeeEEEEEEcCC----CCEEEEEEEeCCCc-C
Confidence            68999999999997755   458999999999888888775  36999999999999763    35699999999855 8


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccCCC-cceeeeeecc
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-DKELIEVKPA  127 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~l~~~  127 (151)
                      ||+||++.              ++|+++...... ...|+.|.|.
T Consensus        72 DD~lG~v~--------------i~L~~v~~~~~~~~~~Wy~L~~~  102 (127)
T cd08394          72 DTLVGTVW--------------IPLSTIRQSNEEGPGEWLTLDSE  102 (127)
T ss_pred             CCceEEEE--------------EEhHHcccCCCCCCCccEecChH
Confidence            99999999              999988754432 1456666543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.88  E-value=2e-21  Score=131.36  Aligned_cols=116  Identities=16%  Similarity=0.273  Sum_probs=95.9

Q ss_pred             CCCcEEEEEEEEeeCCCCCCCC----------CCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccc
Q 047744            1 MKGGILEVLLVNAEGIKHTNIF----------GTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLT   69 (151)
Q Consensus         1 m~~g~L~V~v~~a~~L~~~~~~----------~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~   69 (151)
                      |..|.|+|+|++|++|+..+..          +.+||||++.++++. .+|++. .++.||.|||+|.|.+..     ..
T Consensus         1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~-~~t~~P~Wne~f~~~v~~-----~~   74 (132)
T cd04014           1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTK-PKTNSPVWNEEFTTEVHN-----GR   74 (132)
T ss_pred             CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEc-CCCCCCCcceeEEEEcCC-----CC
Confidence            7789999999999999988752          578999999998866 466665 469999999999999863     36


Q ss_pred             eEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccccc--CCCcceeeeeeccccceecCCCccceEEEEEEE
Q 047744           70 HIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD--QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFK  147 (151)
Q Consensus        70 ~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~  147 (151)
                      .|.|.|||++.++++++||++.              ++|+++...  ... +.|+.|.            ..|+|.+.++
T Consensus        75 ~l~~~v~d~~~~~~~~~iG~~~--------------i~l~~l~~~~~~~~-~~w~~L~------------~~G~l~l~~~  127 (132)
T cd04014          75 NLELTVFHDAAIGPDDFVANCT--------------ISFEDLIQRGSGSF-DLWVDLE------------PQGKLHVKIE  127 (132)
T ss_pred             EEEEEEEeCCCCCCCceEEEEE--------------EEhHHhcccCCCcc-cEEEEcc------------CCcEEEEEEE
Confidence            8999999999888999999999              999998863  333 6676663            3689999988


Q ss_pred             EE
Q 047744          148 FI  149 (151)
Q Consensus       148 ~~  149 (151)
                      |.
T Consensus       128 ~~  129 (132)
T cd04014         128 LK  129 (132)
T ss_pred             Ee
Confidence            74

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.88  E-value=1.2e-21  Score=131.04  Aligned_cols=119  Identities=16%  Similarity=0.368  Sum_probs=96.2

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEEC-CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC-
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCG-NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD-   83 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~-   83 (151)
                      |+|+|++|++|+..+..+.+||||++.++ .+..+|++++ ++.||.|||+|.|.+..     ...|.|+|||++.+++ 
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~   75 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAK-KTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKK   75 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEc-CCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCC
Confidence            78999999999999988999999999996 5667887765 68999999999999864     3689999999998875 


Q ss_pred             -CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEE
Q 047744           84 -GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFK  147 (151)
Q Consensus        84 -d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~  147 (151)
                       |++||++.              +++.++.........|+.|++....   ..+...|+|.+.++
T Consensus        76 ~d~~lG~~~--------------i~l~~l~~~~~~~~~~~~l~~~~~~---~~~~~~G~v~~~~~  123 (123)
T cd08382          76 DQGFLGCVR--------------IRANAVLPLKDTGYQRLDLRKLKKS---DNLSVRGKIVVSLS  123 (123)
T ss_pred             CCceEeEEE--------------EEHHHccccCCCccceeEeecCCCC---CCceEeeEEEEEeC
Confidence             57999999              9999987543222457777554422   35677899998763

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.88  E-value=9.1e-22  Score=135.31  Aligned_cols=124  Identities=16%  Similarity=0.186  Sum_probs=94.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEe------------CCCccc
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFP------------MSDWKL   67 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~------------~~~~~~   67 (151)
                      .|.|+|++|++|+.  ..|.+||||++.+..     ++++|++.+ ++.||+|||+|.|.+.            ..+.+.
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEe-CCCCCccceEEEEEEecccccccccccCCccccc
Confidence            48999999999988  457899999999965     556787775 6999999999999985            111113


Q ss_pred             cceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccccc-CCCcceeeeeecccccee-----cCCCccceE
Q 047744           68 LTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD-QSNDKELIEVKPAPYNVL-----LEDDTYKGQ  141 (151)
Q Consensus        68 ~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~-~~~~~~~~~l~~~~~~~~-----~~~~~~~G~  141 (151)
                      ...|.|+|||++.+++|+|||++.              +++.++... +.. ..|+.|+++...-.     ...+-..|.
T Consensus        78 ~~~L~i~V~d~~~~~~ddfLG~v~--------------i~l~~l~~~~~~~-~~W~~L~~~~~~~~~~~~~~~~~~~~~~  142 (148)
T cd04010          78 KLELRVDLWHASMGGGDVFLGEVR--------------IPLRGLDLQAGSH-QAWYFLQPREEKSTPPGTRSSKDNSLGS  142 (148)
T ss_pred             EEEEEEEEEcCCCCCCCceeEEEE--------------EecccccccCCcC-cceeecCCcccccCCCCCcccccCCccc
Confidence            467999999999888999999999              999988765 444 78999988764431     112224466


Q ss_pred             EEEEE
Q 047744          142 IVIGF  146 (151)
Q Consensus       142 i~~~~  146 (151)
                      +++.+
T Consensus       143 ~~~~~  147 (148)
T cd04010         143 LRLKI  147 (148)
T ss_pred             EEEec
Confidence            66654

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.88  E-value=2.3e-21  Score=130.27  Aligned_cols=115  Identities=23%  Similarity=0.360  Sum_probs=94.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC---
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL---   81 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~---   81 (151)
                      .|+|+|++|++|+..+..+.+||||++.++.+..+|++++ ++.||.|||.|.|.+..    ....|.|+|||++..   
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~-~t~~P~Wne~f~f~~~~----~~~~l~i~v~d~d~~~~~   76 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHN----SSDRIKVRVWDEDDDIKS   76 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceec-CCCCCccceEEEEEecC----CCCEEEEEEEECCCCccc
Confidence            6899999999999999888999999999988888888875 69999999999998864    236899999999852   


Q ss_pred             --------CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEE
Q 047744           82 --------TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGF  146 (151)
Q Consensus        82 --------~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~  146 (151)
                              +.+++||++.              +++.++.  +.. ..|+.|.+..     .....+|+|++.+
T Consensus        77 ~~~~~~~~~~~~~iG~~~--------------i~l~~~~--~~~-~~w~~L~~~~-----~~~~~~G~i~~~~  127 (127)
T cd04027          77 RLKQKFTRESDDFLGQTI--------------IEVRTLS--GEM-DVWYNLEKRT-----DKSAVSGAIRLHI  127 (127)
T ss_pred             ccceeccccCCCcceEEE--------------EEhHHcc--CCC-CeEEECccCC-----CCCcEeEEEEEEC
Confidence                    4689999999              8888764  223 5788887664     2445789999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.88  E-value=4.1e-22  Score=133.63  Aligned_cols=105  Identities=12%  Similarity=0.131  Sum_probs=85.9

Q ss_pred             CcEEEEEEEEeeCCCCCCCC-CCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIF-GTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      .+.|.|+|++|++|+..+.. +.+||||++.+..     .+++|++++ ++.||+|||+|.|.++..+ +....|.|+||
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~-l~~~~L~~~V~   91 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK-KTLNPVFNETLRYKVEREE-LPTRVLNLSVW   91 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCc-CCCCCccCceEEEECCHHH-hCCCEEEEEEE
Confidence            47899999999999998875 7899999998842     346787775 6999999999999987533 24568999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                      |++.++++++||++.              ++|.++...+.. ..|+.|
T Consensus        92 d~~~~~~~~~iG~~~--------------i~L~~~~~~~~~-~~W~~L  124 (125)
T cd08393          92 HRDSLGRNSFLGEVE--------------VDLGSWDWSNTQ-PTWYPL  124 (125)
T ss_pred             eCCCCCCCcEeEEEE--------------EecCccccCCCC-cceEEC
Confidence            999999999999999              999988655443 556654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.88  E-value=2.3e-21  Score=130.15  Aligned_cols=116  Identities=10%  Similarity=0.145  Sum_probs=94.4

Q ss_pred             EEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEE
Q 047744           10 LVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGE   89 (151)
Q Consensus        10 v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~   89 (151)
                      |++|++|+.  ..+.+||||++.+.+.+.+|++.+ ++.||+|||+|.|.+.... .....|.|+|||++..++|++||+
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~-~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~~d~~iG~   77 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLE-NELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVGRNRLIGS   77 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeC-CCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCCCCceEEE
Confidence            789999988  678899999999998888998876 6899999999999986532 146789999999999999999999


Q ss_pred             EEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           90 TVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      +.              ++++++...+.. ..|+.|.+..      ....+|+|.++++|.|
T Consensus        78 ~~--------------~~l~~l~~~~~~-~~~~~L~~~~------~~~~~~~l~l~~~~~~  117 (127)
T cd08373          78 AT--------------VSLQDLVSEGLL-EVTEPLLDSN------GRPTGATISLEVSYQP  117 (127)
T ss_pred             EE--------------EEhhHcccCCce-EEEEeCcCCC------CCcccEEEEEEEEEeC
Confidence            99              999998865554 4555554221      2235799999999986

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.88  E-value=9.2e-22  Score=134.76  Aligned_cols=106  Identities=16%  Similarity=0.202  Sum_probs=88.0

Q ss_pred             CcEEEEEEEEeeCCCCCC-CCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTN-IFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      .+.|.|+|++|++|+..+ ..+.+||||++.+..     .++||++++ +++||+|||+|.|.+..    ....|.|+||
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k-ktlnPvfNE~F~f~v~l----~~~~L~v~V~  102 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR-KTLDPLYQQQLVFDVSP----TGKTLQVIVW  102 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC-CCCCCccCCeEEEEEcC----CCCEEEEEEE
Confidence            578999999999998764 567899999999843     256888775 79999999999999983    5689999999


Q ss_pred             -ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccc
Q 047744           77 -DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAP  128 (151)
Q Consensus        77 -d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~  128 (151)
                       |++.++++++||++.              ++|+++...+.. ..|+.|.|..
T Consensus       103 ~d~~~~~~~~~iG~~~--------------i~L~~l~~~~~~-~~Wy~L~~~~  140 (146)
T cd04028         103 GDYGRMDKKVFMGVAQ--------------ILLDDLDLSNLV-IGWYKLFPTS  140 (146)
T ss_pred             eCCCCCCCCceEEEEE--------------EEcccccCCCCc-eeEEecCCcc
Confidence             678888999999999              999998544444 6888888764

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.88  E-value=8.2e-22  Score=132.16  Aligned_cols=106  Identities=13%  Similarity=0.148  Sum_probs=86.8

Q ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNI-FGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      ..+.|.|.|++|++|+..+. .+.+||||++.+..     .+++|++.+ ++.||.|||+|.|.++..+ +....|.|+|
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~-l~~~~L~~~V   90 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR-NTTNPVYNETLKYSISHSQ-LETRTLQLSV   90 (125)
T ss_pred             CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeee-CCCCCcccceEEEECCHHH-hCCCEEEEEE
Confidence            46889999999999988765 47899999998842     346787765 6899999999999987533 2456899999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                      ||++.++++++||++.              +++.++...+.. ..|+.|
T Consensus        91 ~d~~~~~~~~~lG~~~--------------i~l~~~~~~~~~-~~w~~l  124 (125)
T cd04029          91 WHYDRFGRNTFLGEVE--------------IPLDSWNFDSQH-EECLPL  124 (125)
T ss_pred             EECCCCCCCcEEEEEE--------------EeCCcccccCCc-ccEEEC
Confidence            9999999999999999              999988766554 677765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.87  E-value=1.8e-21  Score=130.21  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=89.0

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.   .+..+|++.+ ++.||.|||+|.|.+...+.+....|.|+|||+
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~   92 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY   92 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeec-CCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence            357899999999999999888899999999883   4557888775 699999999999975332222346799999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP  126 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~  126 (151)
                      +.++++++||++.              +++.++...+.. ..|+.|+|
T Consensus        93 d~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~W~~l~~  125 (125)
T cd08386          93 DRFSRNDPIGEVS--------------LPLNKVDLTEEQ-TFWKDLKP  125 (125)
T ss_pred             CCCcCCcEeeEEE--------------EecccccCCCCc-ceEEecCC
Confidence            9999999999999              999988755554 77887765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.87  E-value=2.3e-21  Score=127.44  Aligned_cols=94  Identities=19%  Similarity=0.269  Sum_probs=80.4

Q ss_pred             cEEEEEEEEeeCCCCCCCC-CCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744            4 GILEVLLVNAEGIKHTNIF-GTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE   79 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~   79 (151)
                      |+|+|+|++|++|+..+.. +.+||||++.+..   ...+|++++ ++.||.|||.|.|.+...+.+....|.|+|||++
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIR-KDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeEC-CCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence            7899999999999999887 8999999998843   346787775 6899999999999876543223468999999999


Q ss_pred             CCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744           80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      .+++|++||++.              ++++++.
T Consensus        80 ~~~~dd~lG~~~--------------i~l~~l~   98 (111)
T cd04041          80 RFTADDRLGRVE--------------IDLKELI   98 (111)
T ss_pred             CCCCCCcceEEE--------------EEHHHHh
Confidence            999999999999              9999997

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.87  E-value=2.8e-21  Score=126.79  Aligned_cols=103  Identities=17%  Similarity=0.260  Sum_probs=85.5

Q ss_pred             EEEEEEEeeCCCCCCC-CCCCCEEEEEEECCeeeEEeeeeCCCCCCee-ceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            6 LEVLLVNAEGIKHTNI-FGTPSYYVIARCGNQEHRSKNSMVKGEKAWW-NEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~w-ne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      |.|+|++|++|+..+. .+.+||||++.++++..+|++++ ++.||.| ||.|.|.++..+ +....|.|+|||++.+++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~-l~~~~l~i~V~d~d~~~~   78 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVK-KSLNPVWNSEWFRFEVDDEE-LQDEPLQIRVMDHDTYSA   78 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceec-CCCCCcccCcEEEEEcChHH-cCCCeEEEEEEeCCCCCC
Confidence            6899999999998874 67899999999999889998886 6899999 999999987643 134689999999999999


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccC--CCcceeeee
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ--SNDKELIEV  124 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~--~~~~~~~~l  124 (151)
                      +++||++.              +++.++...+  ....+|+.|
T Consensus        79 ~~~iG~~~--------------~~l~~l~~~~~~~~~~~w~~l  107 (110)
T cd08688          79 NDAIGKVY--------------IDLNPLLLKDSVSQISGWFPI  107 (110)
T ss_pred             CCceEEEE--------------EeHHHhcccCCccccCCeEEc
Confidence            99999999              9999887632  212566655

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.86  E-value=3.1e-21  Score=132.97  Aligned_cols=94  Identities=18%  Similarity=0.205  Sum_probs=81.0

Q ss_pred             EEEEEEEEeeCCCCCCCCC--------------CCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccce
Q 047744            5 ILEVLLVNAEGIKHTNIFG--------------TPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTH   70 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~--------------~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~   70 (151)
                      +|.|+|++|++|+..+..+              .+||||++.+++++.+|++++ ++.||+|||+|.|.+....  ....
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~-~t~nPvWNE~f~f~v~~p~--~~~~   77 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKK-NSYNPEWNEQIVFPEMFPP--LCER   77 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEc-CCCCCCcceEEEEEeeCCC--cCCE
Confidence            4789999999999987543              589999999999999998876 6899999999999875433  3568


Q ss_pred             EEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccC
Q 047744           71 IKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ  115 (151)
Q Consensus        71 L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~  115 (151)
                      |.|+|||++..++|++||++.              +++.++...+
T Consensus        78 l~~~v~D~d~~~~dd~iG~~~--------------l~l~~l~~~~  108 (151)
T cd04018          78 IKIQIRDWDRVGNDDVIGTHF--------------IDLSKISNSG  108 (151)
T ss_pred             EEEEEEECCCCCCCCEEEEEE--------------EeHHHhccCC
Confidence            999999999999999999999              8888887644

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.86  E-value=4.5e-21  Score=129.01  Aligned_cols=95  Identities=12%  Similarity=0.070  Sum_probs=80.8

Q ss_pred             CcEEEEEEEEeeCCCCCCCC-CCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIF-GTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      .+.|.|.|++|++|+..+.. +.+||||++.+..     .++||++.+ ++.||+|||+|.|.++..+ +....|.+.||
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~-l~~~~L~v~V~   91 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK-GTVNPVFNETLKYVVEADL-LSSRQLQVSVW   91 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc-CCCCCccceEEEEEcCHHH-hCCcEEEEEEE
Confidence            57899999999999998864 8899999998842     356787775 6999999999999987643 24578999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccc
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT  113 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~  113 (151)
                      |++.++++++||++.              |+|+++.-
T Consensus        92 ~~~~~~~~~~lG~~~--------------i~L~~~~~  114 (128)
T cd08392          92 HSRTLKRRVFLGEVL--------------IPLADWDF  114 (128)
T ss_pred             eCCCCcCcceEEEEE--------------EEcCCccc
Confidence            999999999999999              99998854

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.86  E-value=2.8e-21  Score=128.52  Aligned_cols=103  Identities=17%  Similarity=0.277  Sum_probs=83.1

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|+|++|++|+..+ .+.+||||++.+..     .+++|++.+ ++.||.|||+|.|.++..+  ....|.|+|||
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~-~t~~P~~nE~F~f~v~~~~--~~~~l~v~V~~   86 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVP-DSANPLFHETFSFDVNERD--YQKRLLVTVWN   86 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCcccc-CCCCCccccEEEEEcChHH--hCCEEEEEEEC
Confidence            578999999999999888 78899999999853     245777765 6999999999999987643  34578999999


Q ss_pred             CCCCC-CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           78 TELLT-DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        78 ~~~~~-~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                      ++... ++++||++.              +++.++...... .+|+.|
T Consensus        87 ~~~~~~~~~~lG~~~--------------i~l~~~~~~~~~-~~Wy~l  119 (119)
T cd08685          87 KLSKSRDSGLLGCMS--------------FGVKSIVNQKEI-SGWYYL  119 (119)
T ss_pred             CCCCcCCCEEEEEEE--------------ecHHHhccCccc-cceEeC
Confidence            98875 478999999              999998744433 677653

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.86  E-value=5.8e-21  Score=127.71  Aligned_cols=106  Identities=20%  Similarity=0.270  Sum_probs=88.6

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE   79 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~   79 (151)
                      .+.|.|+|++|++|+..+..+.+||||++.+.   .+..+|++.+ ++.||.|||+|.|.++..+ +....|.|+|||++
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~-l~~~~l~i~V~d~~   92 (124)
T cd08387          15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK-KTLNPEFDESFVFEVPPQE-LPKRTLEVLLYDFD   92 (124)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEc-CCCCCCcccEEEEeCCHHH-hCCCEEEEEEEECC
Confidence            57899999999999999988899999999983   3356777765 6999999999999887632 13468999999999


Q ss_pred             CCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744           80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK  125 (151)
Q Consensus        80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~  125 (151)
                      .++++++||++.              ++++++...+.. ..|+.|+
T Consensus        93 ~~~~~~~iG~~~--------------i~l~~~~~~~~~-~~W~~l~  123 (124)
T cd08387          93 QFSRDECIGVVE--------------LPLAEVDLSEKL-DLWRKIQ  123 (124)
T ss_pred             CCCCCceeEEEE--------------EecccccCCCCc-ceEEECc
Confidence            999999999999              999999765554 6777764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.86  E-value=6.4e-21  Score=128.32  Aligned_cols=107  Identities=18%  Similarity=0.236  Sum_probs=84.8

Q ss_pred             CcEEEEEEEEeeCCCCCCCC-CCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEE-EEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIF-GTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIF-EFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f-~v~~~~~~~~~~L~v~v~d   77 (151)
                      .++|.|+|++|++|+..+.. +.+||||++.+.   .++.||++++ ++.||.|||+|.| .++..+ +....|.|+|||
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~-~~~~~L~~~V~d   92 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLR-KTRNPVYDETFTFYGIPYNQ-LQDLSLHFAVLS   92 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEc-CCCCCceeeEEEEcccCHHH-hCCCEEEEEEEE
Confidence            57899999999999998875 889999999884   3456788775 6999999999999 454322 134579999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCccccc--CCCcceeeeeec
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD--QSNDKELIEVKP  126 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~~~~~~l~~  126 (151)
                      ++.+++|++||++.              ++|+++...  +.. ..|..++|
T Consensus        93 ~d~~~~d~~lG~~~--------------i~L~~l~~~~~~~~-~~~~~~~~  128 (128)
T cd08388          93 FDRYSRDDVIGEVV--------------CPLAGADLLNEGEL-LVSREIQP  128 (128)
T ss_pred             cCCCCCCceeEEEE--------------EeccccCCCCCceE-EEEEeccC
Confidence            99999999999999              999888533  222 56766654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.86  E-value=3.2e-20  Score=127.29  Aligned_cols=87  Identities=21%  Similarity=0.406  Sum_probs=77.8

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      .|.|.|+|++|++|+..+. +.+||||+++++++..+|++++ ++.||+|||+|.|.+..    ....|.|+|||++.++
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk-~t~nP~WnE~f~f~i~~----~~~~l~~~V~D~d~~~   74 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIK-KNLNPVWNEELTLSVPN----PMAPLKLEVFDKDTFS   74 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEc-CCCCCeecccEEEEecC----CCCEEEEEEEECCCCC
Confidence            3789999999999998887 7899999999999999999876 69999999999999876    3578999999999999


Q ss_pred             CCcccEEEEEecc
Q 047744           83 DGGFVGETVFSYI   95 (151)
Q Consensus        83 ~d~~iG~~~~~~~   95 (151)
                      +|++||++.+++.
T Consensus        75 ~dd~iG~a~i~l~   87 (145)
T cd04038          75 KDDSMGEAEIDLE   87 (145)
T ss_pred             CCCEEEEEEEEHH
Confidence            9999999994443

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.86  E-value=4.2e-21  Score=128.39  Aligned_cols=97  Identities=12%  Similarity=0.098  Sum_probs=82.6

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC------eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN------QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      .+.|.|.|++|++|+..+..+.+||||++.+..      .+++|++.+ ++.||+|||+|.|.++..+ +....|.|+||
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~-~t~nPvfnE~F~f~v~~~~-L~~~~L~~~V~   90 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALE-DQDKPVFNEVFRVPISSTK-LYQKTLQVDVC   90 (124)
T ss_pred             CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccC-CCCCCccccEEEEECCHHH-hhcCEEEEEEE
Confidence            578999999999999888778899999998742      356777765 6999999999999987754 36789999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccC
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ  115 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~  115 (151)
                      |++.++++++||++.              ++|+++...+
T Consensus        91 ~~~~~~~~~~lG~~~--------------i~L~~~~~~~  115 (124)
T cd08680          91 SVGPDQQEECLGGAQ--------------ISLADFESSE  115 (124)
T ss_pred             eCCCCCceeEEEEEE--------------EEhhhccCCC
Confidence            999999999999999              9999885443

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.86  E-value=6.1e-21  Score=127.53  Aligned_cols=106  Identities=20%  Similarity=0.250  Sum_probs=86.6

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.+   ...+|++.+ ++.||.|||+|.|.+...+ +....|.|+|||+
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~-l~~~~l~~~V~d~   91 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFTFKVPYSE-LGNKTLVFSVYDF   91 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCc-CCCCCceeeeEEEeCCHHH-hCCCEEEEEEEeC
Confidence            3579999999999999998888999999998743   345777765 6899999999999886532 1346899999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                      +.++++++||++.              ++++++...... ..|+.|
T Consensus        92 d~~~~~~~lG~~~--------------i~l~~~~~~~~~-~~W~~l  122 (124)
T cd08385          92 DRFSKHDLIGEVR--------------VPLLTVDLGHVT-EEWRDL  122 (124)
T ss_pred             CCCCCCceeEEEE--------------EecCcccCCCCc-ceEEEc
Confidence            9999999999999              999988654444 677665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.86  E-value=6.5e-21  Score=124.04  Aligned_cols=100  Identities=19%  Similarity=0.290  Sum_probs=83.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG   84 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d   84 (151)
                      .|.|+|++|++|+..+..+.+||||+++++++.++|++.+ ++.||.|||.|.|.+...   ....|.|+|||++.   +
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~---~~~~l~v~v~d~~~---~   73 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKE-RTNNPVWEEGFTFLVRNP---ENQELEIEVKDDKT---G   73 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCcccc-CCCCCcccceEEEEeCCC---CCCEEEEEEEECCC---C
Confidence            3889999999999988888999999999999989998875 689999999999999864   24689999999885   7


Q ss_pred             cccEEEEEeccccccccceeeeecCcccccCC-Ccceeeeee
Q 047744           85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQS-NDKELIEVK  125 (151)
Q Consensus        85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~~l~  125 (151)
                      ++||++.              +++.++..... ....|+.|.
T Consensus        74 ~~iG~~~--------------i~l~~l~~~~~~~~~~w~~L~  101 (105)
T cd04050          74 KSLGSLT--------------LPLSELLKEPDLTLDQPFPLD  101 (105)
T ss_pred             CccEEEE--------------EEHHHhhccccceeeeeEecC
Confidence            8999999              99988875431 114565553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.86  E-value=5.7e-21  Score=127.69  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=83.8

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|+|++|++|+..+..+.+||||++.+.+     ...+|++++ ++.||.|||+|.|.+...+.+....|.|+|||
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d   93 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNPEWNQTFEYSNVRRETLKERTLEVTVWD   93 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC-CCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence            578999999999999998888999999999864     456787765 69999999999998544221235789999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                      ++.++++++||++.              +++++... ... ..|+.|
T Consensus        94 ~~~~~~~~~iG~~~--------------i~l~~~~~-~~~-~~W~~L  124 (125)
T cd04031          94 YDRDGENDFLGEVV--------------IDLADALL-DDE-PHWYPL  124 (125)
T ss_pred             CCCCCCCcEeeEEE--------------Eecccccc-cCC-cceEEC
Confidence            99999999999999              88888332 222 456655

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.85  E-value=9.8e-21  Score=126.78  Aligned_cols=106  Identities=20%  Similarity=0.273  Sum_probs=87.0

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEE-EeCCCccccceEEEEEEEC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFE-FPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~-v~~~~~~~~~~L~v~v~d~   78 (151)
                      .+.|.|+|++|++|+..+..+..||||++.+.   .++.+|++.+ + .||+|||+|.|. ++..+ +....|.|+|||+
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~-l~~~~L~~~V~~~   91 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEE-LNNMALRFRLYGV   91 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHH-hccCEEEEEEEEC
Confidence            57899999999999999988889999997653   3456777654 4 999999999997 55432 3567899999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP  126 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~  126 (151)
                      +.++++++||++.              ++|+++...+.. ..|+.|+|
T Consensus        92 ~~~~~~~~lG~~~--------------i~L~~l~~~~~~-~~w~~L~p  124 (124)
T cd08389          92 ERMRKERLIGEKV--------------VPLSQLNLEGET-TVWLTLEP  124 (124)
T ss_pred             CCcccCceEEEEE--------------EeccccCCCCCc-eEEEeCCC
Confidence            9999999999999              999999665554 77887765

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.85  E-value=1.5e-20  Score=126.11  Aligned_cols=105  Identities=10%  Similarity=0.158  Sum_probs=86.6

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|+|++|++|+..+..+.+||||++.+.     ....+|++++ ++.||+|||+|.|.+...+ +....|.|.|||
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~~~nP~wne~f~f~i~~~~-l~~~~l~i~v~~   92 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK-DNLNPVFDETFEFPVSLEE-LKRRTLDVAVKN   92 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEeccccc-CCCCCEECeEEEEecCHHH-hcCCEEEEEEEE
Confidence            47899999999999999988899999999985     3457888775 6899999999999986532 134689999999


Q ss_pred             CCCC--CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           78 TELL--TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        78 ~~~~--~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                      ++.+  +++++||++.              +++.++...... .+|+.|
T Consensus        93 ~~~~~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~W~~L  126 (127)
T cd04030          93 SKSFLSREKKLLGQVL--------------IDLSDLDLSKGF-TQWYDL  126 (127)
T ss_pred             CCcccCCCCceEEEEE--------------EecccccccCCc-cceEEC
Confidence            9876  6899999999              999998655544 667655

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.85  E-value=2.2e-20  Score=124.36  Aligned_cols=101  Identities=16%  Similarity=0.215  Sum_probs=85.1

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      |.|+|+|++|++|+..+..+.+||||++.++++ ..+|++. .++.||.|||.|.|.+...    .+.|.|+|||++.++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~-~~t~~P~Wne~f~~~v~~~----~~~L~v~v~d~~~~~   75 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTI-SNTLNPVWDEVLYVPVTSP----NQKITLEVMDYEKVG   75 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEE-CCCcCCccCceEEEEecCC----CCEEEEEEEECCCCC
Confidence            689999999999999998899999999999764 4666665 4699999999999988763    478999999999999


Q ss_pred             CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744           83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK  125 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~  125 (151)
                      +|++||++.              +++.+++.. .. .+|+.+.
T Consensus        76 ~d~~IG~~~--------------~~l~~l~~~-~~-~~~~~~~  102 (120)
T cd04045          76 KDRSLGSVE--------------INVSDLIKK-NE-DGKYVEY  102 (120)
T ss_pred             CCCeeeEEE--------------EeHHHhhCC-CC-CceEEec
Confidence            999999999              999998865 33 4555543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.85  E-value=1e-20  Score=132.12  Aligned_cols=108  Identities=16%  Similarity=0.222  Sum_probs=87.0

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..|.|.|+|++|++|+..+..+.+||||++.+.     ...++|++++ ++.||.|||+|.|.....+.+....|.|+||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVK-KSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccC-CCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            468999999999999999988899999999873     3457887775 6899999999999754322123467999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK  125 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~  125 (151)
                      |++.++++++||++.              ++++++...+.. ..|+.+.
T Consensus       104 d~d~~~~d~~lG~v~--------------i~l~~~~~~~~~-~~w~~~~  137 (162)
T cd04020         104 DHDKLSSNDFLGGVR--------------LGLGTGKSYGQA-VDWMDST  137 (162)
T ss_pred             eCCCCCCCceEEEEE--------------EeCCccccCCCc-cccccCC
Confidence            999999999999999              888887655554 5666654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.85  E-value=1.8e-20  Score=125.76  Aligned_cols=85  Identities=22%  Similarity=0.307  Sum_probs=74.3

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      .|+|.|+|++|++|+. +..+.+||||++.++++.++|++++ ++.||+|||+|.|......  ....|.|+|||++.++
T Consensus        27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~-~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~s  102 (127)
T cd04032          27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIW-NNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNGW  102 (127)
T ss_pred             cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceec-CCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCCC
Confidence            5899999999999984 6678899999999998889998886 6899999999999643322  4578999999999999


Q ss_pred             CCcccEEEE
Q 047744           83 DGGFVGETV   91 (151)
Q Consensus        83 ~d~~iG~~~   91 (151)
                      +|++||++.
T Consensus       103 ~dd~IG~~~  111 (127)
T cd04032         103 DDDLLGTCS  111 (127)
T ss_pred             CCCeeEEEE
Confidence            999999999

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.84  E-value=5e-20  Score=122.86  Aligned_cols=107  Identities=14%  Similarity=0.229  Sum_probs=87.3

Q ss_pred             CcEEEEEEEEeeCCCCCC-CCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            3 GGILEVLLVNAEGIKHTN-IFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      .+.|.|.|++|++|+..+ ..+.+||||++.+.   .+..+|++.+ ++.||+|||.|.|.++..+. ....|.|+|||+
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~-~~~~P~wne~f~f~i~~~~l-~~~~l~i~v~d~   90 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKR-KTQNPNFDETFVFQVSFKEL-QRRTLRLSVYDV   90 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEc-CCCCCccceEEEEEcCHHHh-cccEEEEEEEEC
Confidence            578999999999999988 67889999999873   3345676664 69999999999999875321 246899999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP  126 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~  126 (151)
                      +..+++++||++.              ++|.++...... ..|+.|.|
T Consensus        91 ~~~~~~~~iG~~~--------------i~L~~l~~~~~~-~~w~~L~~  123 (123)
T cd08390          91 DRFSRHCIIGHVL--------------FPLKDLDLVKGG-VVWRDLEP  123 (123)
T ss_pred             CcCCCCcEEEEEE--------------EeccceecCCCc-eEEEeCCC
Confidence            9988999999999              999998766655 67777653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.84  E-value=1.5e-19  Score=121.05  Aligned_cols=115  Identities=16%  Similarity=0.249  Sum_probs=89.8

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe---eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ---EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      .|.|+|++|++|+..+..+.+||||++.+.+.   ..+|++++ ++.||.|||+|.|.+...   ....|.|+|||++.+
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~-~t~~P~Wne~f~f~i~~~---~~~~L~i~v~d~d~~   77 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEEFELEVPAG---EPLWISATVWDRSFV   77 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEec-CCCCCcccceEEEEcCCC---CCCEEEEEEEECCCC
Confidence            58999999999999998889999999987643   46787765 689999999999988763   246899999999998


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCccccc--CCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD--QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      +++++||++.              ++++++...  +.....|+.|.            .+|+|.+.+.+.
T Consensus        78 ~~~~~iG~~~--------------i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~  121 (126)
T cd04043          78 GKHDLCGRAS--------------LKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSME  121 (126)
T ss_pred             CCCceEEEEE--------------EecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEe
Confidence            8999999999              988876432  22213454443            257887777663

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.84  E-value=3.2e-20  Score=123.74  Aligned_cols=106  Identities=15%  Similarity=0.182  Sum_probs=85.3

Q ss_pred             CCcEEEEEEEEeeCCCCCC-CCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTN-IFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      ..+.|.|+|++|++|+..+ ..+.+||||++.+..     ...+|++.+ ++.||.|||+|.|.+...+ +....|.|+|
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~f~f~i~~~~-l~~~~l~i~v   89 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK-NTTNPVFNETLKYHISKSQ-LETRTLQLSV   89 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccC-CCCCCcccceEEEeCCHHH-hCCCEEEEEE
Confidence            3589999999999999888 678899999998742     346777654 6999999999999877532 1356899999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                      ||++.++++++||++.              ++++++...... ..|+.|
T Consensus        90 ~d~~~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~w~~l  123 (123)
T cd08521          90 WHHDRFGRNTFLGEVE--------------IPLDSWDLDSQQ-SEWYPL  123 (123)
T ss_pred             EeCCCCcCCceeeEEE--------------EecccccccCCC-ccEEEC
Confidence            9999999999999999              999988654444 566643

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.84  E-value=1.6e-19  Score=119.34  Aligned_cols=115  Identities=20%  Similarity=0.361  Sum_probs=88.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG   84 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d   84 (151)
                      |.|+|++|++|+..   +.+||||++.++++. .+|++.. + .||.|||+|.|.++..+. ....|.+.+||.+....+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~-~-~~P~Wne~f~f~v~~~~~-~~~~l~i~v~d~~~~~~~   75 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVE-K-LNPFWGEEFVFDDPPPDV-TFFTLSFYNKDKRSKDRD   75 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEE-C-CCCcccceEEEecCCccc-cEEEEEEEEEecccCCCe
Confidence            78999999999876   789999999998754 5777765 5 999999999999876431 346788999998876666


Q ss_pred             cccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      .++|.+.              +  ..+...+.. +.|+.|+|...     .+...|+|++.+.|
T Consensus        76 ~~~g~v~--------------l--~~~~~~~~~-~~w~~L~~~~~-----~~~~~G~l~l~~~~  117 (117)
T cd08383          76 IVIGKVA--------------L--SKLDLGQGK-DEWFPLTPVDP-----DSEVQGSVRLRARY  117 (117)
T ss_pred             eEEEEEE--------------e--cCcCCCCcc-eeEEECccCCC-----CCCcCceEEEEEEC
Confidence            6666666              4  444334444 78999987753     34578999999987

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.83  E-value=2.8e-20  Score=126.36  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|+|++|++|+..+..+.+||||++.+...     +.+|++.+ ++.||+|||+|.|.++..+ +....|.|+|||
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~-l~~~~l~~~V~~   91 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR-DDTNPIFNEAMIFSVPAIV-LQDLSLRVTVAE   91 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCcccc-CCCCCeeceeEEEECCHHH-hCCcEEEEEEEe
Confidence            5789999999999999888889999999988421     44666664 6999999999999987643 356789999999


Q ss_pred             CCCCCCCcccEEEE
Q 047744           78 TELLTDGGFVGETV   91 (151)
Q Consensus        78 ~~~~~~d~~iG~~~   91 (151)
                      ++.++++++||++.
T Consensus        92 ~d~~~~~~~iG~v~  105 (136)
T cd08406          92 STEDGKTPNVGHVI  105 (136)
T ss_pred             CCCCCCCCeeEEEE
Confidence            99999999999999

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.83  E-value=2e-19  Score=118.60  Aligned_cols=101  Identities=17%  Similarity=0.272  Sum_probs=83.2

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG   84 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d   84 (151)
                      |+|.|++|++|+..+..+.+||||++.+.+.. .+|+++. ++.+|.|||+|.|.+...   ..+.+.|+|||++..+++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~-~~~~P~Wne~f~~~~~~~---~~~~l~~~v~d~~~~~~~   76 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIK-KTLNPVWNESFEVPVPSR---VRAVLKVEVYDWDRGGKD   76 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceec-CCCCCcccccEEEEeccC---CCCEEEEEEEeCCCCCCC
Confidence            57999999999998888889999999997543 5777764 699999999999988753   357899999999998899


Q ss_pred             cccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744           85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK  125 (151)
Q Consensus        85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~  125 (151)
                      ++||++.              +++.++...... ..|..|.
T Consensus        77 ~~iG~~~--------------~~l~~l~~~~~~-~~~~~L~  102 (115)
T cd04040          77 DLLGSAY--------------IDLSDLEPEETT-ELTLPLD  102 (115)
T ss_pred             CceEEEE--------------EEHHHcCCCCcE-EEEEECc
Confidence            9999999              998888764443 4555554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.3e-19  Score=143.08  Aligned_cols=127  Identities=17%  Similarity=0.307  Sum_probs=103.8

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE   79 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~   79 (151)
                      ...|.|+|++|++|+..+..|.+||||++.+..   .+.+|++.+ ++.||+|||+|.|.++..+ +....|.+.|||.|
T Consensus       166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~-l~~~~L~l~V~~~d  243 (421)
T KOG1028|consen  166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHR-KTLNPVFNETFRFEVPYEE-LSNRVLHLSVYDFD  243 (421)
T ss_pred             CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeee-cCcCCccccceEeecCHHH-hccCEEEEEEEecC
Confidence            467999999999999999667899999999854   456788776 6999999999999977654 36789999999999


Q ss_pred             CCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      +|++|++||++.              ++|..+...... ..|..+++..-.   ..+ ..|||.++++|.|
T Consensus       244 rfsr~~~iGev~--------------~~l~~~~~~~~~-~~w~~l~~~~~~---~~~-~~gel~~sL~Y~p  295 (421)
T KOG1028|consen  244 RFSRHDFIGEVI--------------LPLGEVDLLSTT-LFWKDLQPSSTD---SEE-LAGELLLSLCYLP  295 (421)
T ss_pred             CcccccEEEEEE--------------ecCccccccccc-eeeeccccccCC---ccc-ccceEEEEEEeec
Confidence            999999999999              998888655543 568888765421   122 2289999999987

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.82  E-value=1.6e-19  Score=120.86  Aligned_cols=91  Identities=21%  Similarity=0.320  Sum_probs=78.9

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee--eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE--HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~--~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      .|+|.|++|++|+..+..+.+||||++.++++.  .+|++++ ++.||.|||+|.|.+...   ....|.|+|||++.++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~-~t~nP~Wne~f~f~~~~~---~~~~L~~~V~d~d~~~   76 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLP---GNSILKISVMDYDLLG   76 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEE-CCCCCccceEEEEEecCC---CCCEEEEEEEECCCCC
Confidence            479999999999999988999999999998765  4666665 599999999999987653   3578999999999999


Q ss_pred             CCcccEEEEEeccccccccceeeeecCcccc
Q 047744           83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIIT  113 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~  113 (151)
                      +|++||++.              +++.+...
T Consensus        77 ~dd~iG~~~--------------i~l~~~~~   93 (124)
T cd04037          77 SDDLIGETV--------------IDLEDRFF   93 (124)
T ss_pred             CCceeEEEE--------------Eeeccccc
Confidence            999999999              99888764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.82  E-value=1.4e-19  Score=123.18  Aligned_cols=106  Identities=17%  Similarity=0.270  Sum_probs=89.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEEC----CeeeEEeeeeCCCCCCeeceEEEEEEeCCC------------ccccc
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCG----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSD------------WKLLT   69 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~------------~~~~~   69 (151)
                      |.|.|++|++|+.. ..+.+||||++.+.    .+.++|+++. ++.||.|||+|.|.+....            .+...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~-~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKK-KTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceee-CCCCCCcceEEEEEcccccccccccccccccccccc
Confidence            67999999999888 67899999999998    6678888776 5899999999999876641            11346


Q ss_pred             eEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccc
Q 047744           70 HIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAP  128 (151)
Q Consensus        70 ~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~  128 (151)
                      .|.|+|||.+.++++++||++.              +++.++...+.. ..|+.|+|..
T Consensus        79 ~l~i~V~d~~~~~~~~~IG~~~--------------i~l~~l~~~~~~-~~W~~L~~~~  122 (137)
T cd08675          79 ELRVELWHASMVSGDDFLGEVR--------------IPLQGLQQAGSH-QAWYFLQPRE  122 (137)
T ss_pred             EEEEEEEcCCcCcCCcEEEEEE--------------EehhhccCCCcc-cceEecCCcC
Confidence            8999999999888999999999              999988765555 7898888775

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.82  E-value=2e-19  Score=118.06  Aligned_cols=91  Identities=20%  Similarity=0.258  Sum_probs=77.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCC-ccccceEEEEEEECCCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSD-WKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~-~~~~~~L~v~v~d~~~~~~   83 (151)
                      .|+|+|++|++|+    .+.+||||++++++++++|++.+ ++.||.|||+|.|.+.... .+....|.|+|||++.+++
T Consensus         5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~   79 (111)
T cd04011           5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS   79 (111)
T ss_pred             EEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence            5899999999998    46799999999999999988775 6899999999999875432 1124689999999999999


Q ss_pred             CcccEEEEEeccccccccceeeeecCccccc
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITD  114 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~  114 (151)
                      |++||++.              ++++++...
T Consensus        80 ~~~iG~~~--------------i~l~~v~~~   96 (111)
T cd04011          80 DTLIGSFK--------------LDVGTVYDQ   96 (111)
T ss_pred             CCccEEEE--------------ECCccccCC
Confidence            99999999              999888654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.82  E-value=7.9e-20  Score=124.26  Aligned_cols=88  Identities=15%  Similarity=0.252  Sum_probs=73.7

Q ss_pred             CCcEEEEEEEEeeCCCCCCC--CCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNI--FGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFR   74 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~   74 (151)
                      ..+.|.|.|++|++|+..+.  .+.+||||++.+..+     +++|++.+ ++.||+|||.|.|.++..+ +....|.|+
T Consensus        13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~-L~~~~L~~~   90 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAK-HKINPVWNEMIMFELPSEL-LAASSVELE   90 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceee-CCCCCccccEEEEECCHHH-hCccEEEEE
Confidence            46889999999999998873  345999999988542     34676665 6999999999999988643 356789999


Q ss_pred             EEECCCCCCCcccEEEE
Q 047744           75 IMDTELLTDGGFVGETV   91 (151)
Q Consensus        75 v~d~~~~~~d~~iG~~~   91 (151)
                      |||++.++++++||++.
T Consensus        91 V~d~d~~~~~d~iG~v~  107 (138)
T cd08407          91 VLNQDSPGQSLPLGRCS  107 (138)
T ss_pred             EEeCCCCcCcceeceEE
Confidence            99999999999999999

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.82  E-value=4.1e-19  Score=116.67  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             CCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccc
Q 047744           20 NIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQ   98 (151)
Q Consensus        20 ~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~   98 (151)
                      ...|.+||||++.++++. .+|++.+ ++.||.|||.|.|.+...   ....|.|+|||++.+ ++++||++.       
T Consensus         8 ~~~G~~dPYv~v~v~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~---~~~~l~i~v~d~~~~-~d~~iG~~~-------   75 (111)
T cd04052           8 SKTGLLSPYAELYLNGKLVYTTRVKK-KTNNPSWNASTEFLVTDR---RKSRVTVVVKDDRDR-HDPVLGSVS-------   75 (111)
T ss_pred             ccCCCCCceEEEEECCEEEEEEeeec-cCCCCccCCceEEEecCc---CCCEEEEEEEECCCC-CCCeEEEEE-------
Confidence            346789999999998764 5676654 689999999999988753   357799999999988 899999999       


Q ss_pred             cccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           99 TSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        99 ~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                             ++|.++.........|+.|.          +..+|+|.+++.|.|
T Consensus        76 -------v~L~~l~~~~~~~~~w~~L~----------~~~~G~i~~~~~~~p  110 (111)
T cd04052          76 -------ISLNDLIDATSVGQQWFPLS----------GNGQGRIRISALWKP  110 (111)
T ss_pred             -------ecHHHHHhhhhccceeEECC----------CCCCCEEEEEEEEec
Confidence                   99998875433225666653          245799999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.81  E-value=1e-18  Score=117.12  Aligned_cols=118  Identities=18%  Similarity=0.285  Sum_probs=90.0

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      ..|.|+|++|+ |...+..+.+||||++.++++ ..+|++.+ ++.||.|||.|.|.+..     ...|.|+|||++..+
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~-~t~~P~Wne~f~~~~~~-----~~~l~~~V~d~~~~~   74 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSK-KTSNPKWNEHFTVLVTP-----QSTLEFKVWSHHTLK   74 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeC-CCCCCccccEEEEEeCC-----CCEEEEEEEeCCCCC
Confidence            47899999998 555555788999999999877 67887765 68999999999998864     368999999999999


Q ss_pred             CCcccEEEEEeccccccccceeeeecCcccccCCC-c---ceeeeeeccccceecCCCccceEEEEEE
Q 047744           83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-D---KELIEVKPAPYNVLLEDDTYKGQIVIGF  146 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~~~~G~i~~~~  146 (151)
                      +|++||++.              ++++++...... .   ..|+.+.-..    ...+...|+|.+.+
T Consensus        75 ~~~~iG~~~--------------i~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~~~~~~  124 (125)
T cd04021          75 ADVLLGEAS--------------LDLSDILKNHNGKLENVKLTLNLSSEN----KGSSVKVGELTVIL  124 (125)
T ss_pred             CCcEEEEEE--------------EEHHHhHhhcCCCccceEEEEEEEccC----CCcceeeeeEEEEe
Confidence            999999999              998888754331 0   1244443110    11346789998875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.81  E-value=1.9e-19  Score=122.30  Aligned_cols=87  Identities=18%  Similarity=0.339  Sum_probs=73.3

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC--e---eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN--Q---EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~--~---~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|+|++|++|+..+..+.+||||++.+..  +   +.+|++.+ ++.||.|||+|.|.++... +....|.|+|||
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~-~~~~~l~~~v~d   91 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK-CTLNPVFNESFVFDIPSEE-LEDISVEFLVLD   91 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc-CCCCCccCceEEEECCHHH-hCCCEEEEEEEE
Confidence            578999999999999999889999999998743  2   34666664 6999999999999987533 134679999999


Q ss_pred             CCCCCCCcccEEEE
Q 047744           78 TELLTDGGFVGETV   91 (151)
Q Consensus        78 ~~~~~~d~~iG~~~   91 (151)
                      ++.++++++||++.
T Consensus        92 ~d~~~~~~~iG~~~  105 (136)
T cd08404          92 SDRVTKNEVIGRLV  105 (136)
T ss_pred             CCCCCCCccEEEEE
Confidence            99999999999999

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.80  E-value=2.1e-19  Score=122.05  Aligned_cols=88  Identities=20%  Similarity=0.403  Sum_probs=73.6

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..|.|.|.|++|++|+..+..+.+||||++.+..     ...+|++.+ ++.||.|||+|.|.++..+ +....|.|+||
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~-l~~~~l~~~v~   90 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQ-IQKVHLIVTVL   90 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee-CCCCCcccceEEEECCHHH-hCCCEEEEEEE
Confidence            4689999999999999999889999999998842     235666654 6999999999999986532 12357999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++.+++|++||++.
T Consensus        91 d~~~~~~~~~iG~~~  105 (136)
T cd08402          91 DYDRIGKNDPIGKVV  105 (136)
T ss_pred             eCCCCCCCceeEEEE
Confidence            999999999999999

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.80  E-value=5.5e-19  Score=119.46  Aligned_cols=87  Identities=15%  Similarity=0.231  Sum_probs=74.7

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|+|++|++|+..+..+.+||||++.+..     ...+|++.+ ++.||.|||+|.|.+...+ +....|.|+|||
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~-l~~~~l~~~V~d   89 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSD-LAKKTLEITVWD   89 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe-ccCCCCcccEEEEECCHHH-hCCCEEEEEEEe
Confidence            589999999999999999888999999998842     346787776 6999999999999887533 134689999999


Q ss_pred             CCCCCCCcccEEEE
Q 047744           78 TELLTDGGFVGETV   91 (151)
Q Consensus        78 ~~~~~~d~~iG~~~   91 (151)
                      ++..+++++||++.
T Consensus        90 ~d~~~~~~~lG~~~  103 (133)
T cd08384          90 KDIGKSNDYIGGLQ  103 (133)
T ss_pred             CCCCCCccEEEEEE
Confidence            99988999999999

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.80  E-value=5.8e-19  Score=119.48  Aligned_cols=95  Identities=21%  Similarity=0.240  Sum_probs=79.2

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-------CeeeEEeeeeCCCCCCeeceEEEEEEeCCCc-cccceEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-------NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDW-KLLTHIKFR   74 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-------~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~-~~~~~L~v~   74 (151)
                      .+.|.|+|++|++|+..+..+.+||||++.+.       ....+|++++ ++.||+|||+|.|.+..... .....|.|+
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKK-KTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCc-CCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            46899999999999998888899999999885       2356787775 68999999999998865210 134689999


Q ss_pred             EEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744           75 IMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        75 v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      |||++.++++++||++.              ++++++.
T Consensus        94 V~d~d~~~~d~~iG~~~--------------i~l~~l~  117 (133)
T cd04009          94 VKDYDLLGSNDFEGEAF--------------LPLNDIP  117 (133)
T ss_pred             EEecCCCCCCcEeEEEE--------------EeHHHCC
Confidence            99999999999999999              8887775

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.80  E-value=9.2e-19  Score=120.88  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=80.5

Q ss_pred             CCCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----------------------------eeEEeeeeCCCCCCe
Q 047744            1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----------------------------EHRSKNSMVKGEKAW   51 (151)
Q Consensus         1 m~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----------------------------~~~T~~~~~~~~nP~   51 (151)
                      ++.+.|.|+|++|++|...+..|.+||||++.+...                             ..+|++. .++.||.
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~-~~tlnP~  103 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVK-PQTLNPV  103 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEeccee-cCCCCCc
Confidence            467899999999999999998899999999988532                             2456655 4699999


Q ss_pred             eceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           52 WNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        52 wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                      |||+|.|.+...   ....|.|+|||++    +++||++.              ++++++... .. ..|+.|
T Consensus       104 WnE~F~f~v~~~---~~~~L~i~V~D~d----d~~IG~v~--------------i~l~~l~~~-~~-d~W~~L  153 (153)
T cd08676         104 WNETFRFEVEDV---SNDQLHLDIWDHD----DDFLGCVN--------------IPLKDLPSC-GL-DSWFKL  153 (153)
T ss_pred             cccEEEEEeccC---CCCEEEEEEEecC----CCeEEEEE--------------EEHHHhCCC-CC-CCeEeC
Confidence            999999988653   3578999999997    78999999              888888733 23 566543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.80  E-value=2.7e-19  Score=158.98  Aligned_cols=119  Identities=13%  Similarity=0.271  Sum_probs=100.5

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      -|.|.|+|++|++|.  +.++++||||+++++++ ++||++++ ++.||+|||.|.|.+..+.  ....|.|+|||+|.+
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~--~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVS-HSSSPEWKEGFTWAFDSPP--KGQKLHISCKSKNTF 2053 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccC-CCCCCCcccceeeeecCCC--CCCceEEEEEecCcc
Confidence            489999999999998  55789999999999966 67788876 6999999999998776644  456799999999999


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceE---EEEEEEEEe
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQ---IVIGFKFIV  150 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---i~~~~~~~~  150 (151)
                      ++| .||++.              |++.++..++.. .+|++|.        .++++.|+   |.|++.|.+
T Consensus      2054 ~kd-~~G~~~--------------i~l~~vv~~~~~-~~~~~L~--------~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2054 GKS-SLGKVT--------------IQIDRVVMEGTY-SGEYSLN--------PESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             CCC-CCceEE--------------EEHHHHhcCcee-eeeeecC--------cccccCCCcceEEEEEEecC
Confidence            655 899999              999999988877 7777774        35667888   999999864

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.79  E-value=4.3e-18  Score=117.56  Aligned_cols=121  Identities=13%  Similarity=0.147  Sum_probs=87.7

Q ss_pred             EEEEEEEEeeC--CCCCCCCCCCCEEEEEEE-----CCeeeEEeeeeCCCCCCeeceEEEEEEeCCC-----ccccceEE
Q 047744            5 ILEVLLVNAEG--IKHTNIFGTPSYYVIARC-----GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSD-----WKLLTHIK   72 (151)
Q Consensus         5 ~L~V~v~~a~~--L~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~-----~~~~~~L~   72 (151)
                      ...++|..|++  |+..+..+.+||||++.+     ..++.+|++.+ ++.||+|||+|.|.+....     .+....|.
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~   81 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQRVFKRHGLK   81 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCccc-CCCCCcccceEEEEeccccchhhhhccCCcEE
Confidence            35666777776  566666678999999986     23567888876 6999999999999986531     12356799


Q ss_pred             EEEEECCCC-CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           73 FRIMDTELL-TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        73 v~v~d~~~~-~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      |+|||++.+ .+|++||++.              ++|+.+...... ..|+.|       .+.....-|+|.+.++.
T Consensus        82 ~~V~d~~~f~~~D~~iG~~~--------------i~L~~l~~~~~~-~~~~~L-------~~~~k~~Gg~l~v~ir~  136 (155)
T cd08690          82 FEVYHKGGFLRSDKLLGTAQ--------------VKLEPLETKCEI-HESVDL-------MDGRKATGGKLEVKVRL  136 (155)
T ss_pred             EEEEeCCCcccCCCeeEEEE--------------EEcccccccCcc-eEEEEh-------hhCCCCcCCEEEEEEEe
Confidence            999999986 5799999999              999998655443 344443       22223345888887764

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.79  E-value=6e-18  Score=114.94  Aligned_cols=116  Identities=17%  Similarity=0.235  Sum_probs=86.8

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-------------eeeEEeeeeCCCCCCee-ceEEEEEEeCCCccccce
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-------------QEHRSKNSMVKGEKAWW-NEKFIFEFPMSDWKLLTH   70 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------------~~~~T~~~~~~~~nP~w-ne~f~f~v~~~~~~~~~~   70 (151)
                      +..|++++|++|+ .+.+|++||||++.+..             +.++|++.+ ++.||+| ||+|.|.+..     ...
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~-----~~~   74 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVE-NTINPVWHREQFVFVGLP-----TDV   74 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEc-CCCCCceEceEEEEEcCC-----CCE
Confidence            4678999999998 77889999999998842             356777765 6899999 9999998864     358


Q ss_pred             EEEEEEECCCCCC---CcccEEEEEeccccccccceeeeecCcccccCCCc--ceeeeeeccccceecCCCccceEEEEE
Q 047744           71 IKFRIMDTELLTD---GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSND--KELIEVKPAPYNVLLEDDTYKGQIVIG  145 (151)
Q Consensus        71 L~v~v~d~~~~~~---d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~i~~~  145 (151)
                      |.|+|||++..++   +++||++.              +++.++.......  ..|+.+..++     ..+...|+|.+.
T Consensus        75 L~v~V~D~~~~~~~~~~d~lG~~~--------------i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~  135 (137)
T cd08691          75 LEIEVKDKFAKSRPIIRRFLGKLS--------------IPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFR  135 (137)
T ss_pred             EEEEEEecCCCCCccCCceEEEEE--------------EEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEE
Confidence            9999999865443   79999999              9999997554331  2334443222     245677998875


Q ss_pred             E
Q 047744          146 F  146 (151)
Q Consensus       146 ~  146 (151)
                      +
T Consensus       136 ~  136 (137)
T cd08691         136 F  136 (137)
T ss_pred             e
Confidence            4

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.79  E-value=9.1e-19  Score=119.24  Aligned_cols=88  Identities=15%  Similarity=0.225  Sum_probs=75.3

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC------eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN------QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      ..++|.|+|++|++|+..+..+.+||||++.+..      .+++|++.+ ++.||+|||+|.|.++..+ +....|.|+|
T Consensus        13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~-l~~~~L~~~V   90 (138)
T cd08408          13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR-GQPDPEFKETFVFQVALFQ-LSEVTLMFSV   90 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec-CCCCCcEeeeEEEECCHHH-hCccEEEEEE
Confidence            3689999999999999998888999999998842      235777765 6899999999999987633 3567899999


Q ss_pred             EECCCCCCCcccEEEE
Q 047744           76 MDTELLTDGGFVGETV   91 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~   91 (151)
                      ||++.++++++||++.
T Consensus        91 ~~~~~~~~~~~iG~v~  106 (138)
T cd08408          91 YNKRKMKRKEMIGWFS  106 (138)
T ss_pred             EECCCCCCCcEEEEEE
Confidence            9999999999999999

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.79  E-value=1.7e-18  Score=116.70  Aligned_cols=104  Identities=18%  Similarity=0.252  Sum_probs=85.7

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|+|++|++|+..+..+..||||++.+.+     ...+|++++ ++.+|.|||+|.|.+...+  ....|.|+|||
T Consensus        12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d   88 (131)
T cd04026          12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK-KTLNPVWNETFTFDLKPAD--KDRRLSIEVWD   88 (131)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeec-CCCCCCccceEEEeCCchh--cCCEEEEEEEE
Confidence            478999999999999888888899999999853     457787765 6899999999999877543  35689999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK  125 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~  125 (151)
                      ++.++++++||++.              ++++++... .. ..|+.|.
T Consensus        89 ~~~~~~~~~iG~~~--------------~~l~~l~~~-~~-~~w~~L~  120 (131)
T cd04026          89 WDRTTRNDFMGSLS--------------FGVSELIKM-PV-DGWYKLL  120 (131)
T ss_pred             CCCCCCcceeEEEE--------------EeHHHhCcC-cc-CceEECc
Confidence            99888999999999              998888743 33 5666654

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.79  E-value=1.3e-18  Score=117.90  Aligned_cols=88  Identities=16%  Similarity=0.275  Sum_probs=73.5

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|+|+|++|++|+..+..+.+||||++.+..     ...+|++. .++.||.|||+|.|.++... .....|.|+||
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~i~~~~-~~~~~l~~~v~   89 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVK-KNTLNPTYNEALVFDVPPEN-VDNVSLIIAVV   89 (134)
T ss_pred             CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcc-cCCCCCcccceEEEECCHHH-hCCCEEEEEEE
Confidence            4689999999999999999899999999998742     23566655 46899999999999876532 13356999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++.++++++||++.
T Consensus        90 d~~~~~~~~~IG~~~  104 (134)
T cd08403          90 DYDRVGHNELIGVCR  104 (134)
T ss_pred             ECCCCCCCceeEEEE
Confidence            999999999999999

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.79  E-value=1.1e-18  Score=118.39  Aligned_cols=87  Identities=22%  Similarity=0.375  Sum_probs=73.3

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC--C---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG--N---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .++|.|+|++|++|+..+..+.+||||++.+.  +   ...+|++++ ++.||.|||+|.|.++... +....|.|+|||
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~-~~~~~l~~~v~d   91 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLER-LRETTLIITVMD   91 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHH-hCCCEEEEEEEE
Confidence            57899999999999998888999999999873  2   245777765 6899999999999876422 134689999999


Q ss_pred             CCCCCCCcccEEEE
Q 047744           78 TELLTDGGFVGETV   91 (151)
Q Consensus        78 ~~~~~~d~~iG~~~   91 (151)
                      ++.++++++||++.
T Consensus        92 ~~~~~~~~~lG~~~  105 (136)
T cd08405          92 KDRLSRNDLIGKIY  105 (136)
T ss_pred             CCCCCCCcEeEEEE
Confidence            99999999999999

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.78  E-value=6e-19  Score=120.03  Aligned_cols=86  Identities=16%  Similarity=0.256  Sum_probs=73.2

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|.|++|++|+..+ .+.+||||++.+..     .+++|++.+ ++.||.|||+|.|.++..+ +....|.|+|||
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~-l~~~~L~~~V~~   90 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQ-LDTASLSLSVMQ   90 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHH-hCccEEEEEEEe
Confidence            578999999999999888 78899999998753     245677654 7999999999999987543 245789999999


Q ss_pred             CCCCCCCcccEEEE
Q 047744           78 TELLTDGGFVGETV   91 (151)
Q Consensus        78 ~~~~~~d~~iG~~~   91 (151)
                      ++..+++++||++.
T Consensus        91 ~~~~~~~~~lG~v~  104 (137)
T cd08409          91 SGGVRKSKLLGRVV  104 (137)
T ss_pred             CCCCCCcceEEEEE
Confidence            99999999999999

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.78  E-value=1.5e-18  Score=117.72  Aligned_cols=88  Identities=17%  Similarity=0.321  Sum_probs=73.4

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..|.|.|+|++|++|+..+..+.+||||++.+..     +.++|++.+ ++.||.|||+|.|.++..+ +....|.|+||
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~-l~~~~l~~~V~   89 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMR-GTIDPFYNESFSFKVPQEE-LENVSLVFTVY   89 (135)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcccc-CCCCCccceeEEEeCCHHH-hCCCEEEEEEE
Confidence            4589999999999999999889999999998732     235666654 6999999999999986533 13457999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++..+++++||++.
T Consensus        90 d~d~~~~~~~iG~~~  104 (135)
T cd08410          90 GHNVKSSNDFIGRIV  104 (135)
T ss_pred             eCCCCCCCcEEEEEE
Confidence            999999999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.78  E-value=3e-18  Score=113.98  Aligned_cols=97  Identities=15%  Similarity=0.341  Sum_probs=78.8

Q ss_pred             EEEEeeCCCCCCCCCCCCEEEEEEECCee-------eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCC-
Q 047744            9 LLVNAEGIKHTNIFGTPSYYVIARCGNQE-------HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTEL-   80 (151)
Q Consensus         9 ~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-------~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~-   80 (151)
                      ..++|++|+..+..+.+||||++.+.+..       .+|++++ ++.||+|||+|.|.+...   ....|.|+|||++. 
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~-~t~nP~wne~f~f~~~~~---~~~~l~~~V~d~d~~   80 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIK-NNLNPDFVTTFTVDYYFE---EVQKLRFEVYDVDSK   80 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeC-CCCCCCceEEEEEEEEeE---eeeEEEEEEEEecCC
Confidence            34889999999988999999999986543       6787775 699999999999986542   34689999999997 


Q ss_pred             ---CCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           81 ---LTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        81 ---~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                         ++++++||++.              +++.++...... ..++.|
T Consensus        81 ~~~~~~~d~iG~~~--------------i~l~~l~~~~~~-~~~~~l  112 (120)
T cd04048          81 SKDLSDHDFLGEAE--------------CTLGEIVSSPGQ-KLTLPL  112 (120)
T ss_pred             cCCCCCCcEEEEEE--------------EEHHHHhcCCCc-EEEEEc
Confidence               78999999999              999999865544 344444

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.1e-19  Score=140.54  Aligned_cols=94  Identities=21%  Similarity=0.297  Sum_probs=82.0

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ....|.|+|.+|++|.+.|-.|-+||||++++-.     .+++|++++ .++||+|||+|.|++.+.+  .++.|.|+||
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~D--kdrRlsiEvW  254 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSD--KDRRLSIEVW  254 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEeccccc--ccceeEEEEe
Confidence            3567899999999999999999999999998842     356777776 6999999999999998876  6789999999


Q ss_pred             ECCCCCCCcccEEEEEeccccc
Q 047744           77 DTELLTDGGFVGETVFSYIHDQ   98 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~   98 (151)
                      |||..+++||||..+|.+++++
T Consensus       255 DWDrTsRNDFMGslSFgisEl~  276 (683)
T KOG0696|consen  255 DWDRTSRNDFMGSLSFGISELQ  276 (683)
T ss_pred             cccccccccccceecccHHHHh
Confidence            9999999999999996666665

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.78  E-value=4.4e-18  Score=114.71  Aligned_cols=87  Identities=11%  Similarity=0.224  Sum_probs=71.8

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCC-CCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKG-EKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~-~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      ..|+|.|.|++|++|+.....+..||||++.+-.     .++||++.+ ++ .+|+|||+|.|+++...  .+..|.++|
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k-~t~~~P~fNEsF~Fdv~~~~--~~v~l~v~v   88 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVK-SSNGQVKWGETMIFPVTQQE--HGIQFLIKL   88 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEE-CCCCCceecceEEEeCCchh--heeEEEEEE
Confidence            4689999999999999876566789999998732     346676665 46 46999999999998743  467899999


Q ss_pred             EECCCCCCCcccEEEE
Q 047744           76 MDTELLTDGGFVGETV   91 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~   91 (151)
                      ||++..+++++||++.
T Consensus        89 ~d~~~~~~n~~IG~v~  104 (135)
T cd08692          89 YSRSSVRRKHFLGQVW  104 (135)
T ss_pred             EeCCCCcCCceEEEEE
Confidence            9999999999999999

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.77  E-value=5.7e-18  Score=113.03  Aligned_cols=98  Identities=19%  Similarity=0.252  Sum_probs=79.2

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|+|+|++|++|+..+..+.+||||++.+.     ....+|++++ ++.||.|||+|.|.......+....|.|+||
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH-KTRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeec-CCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            357899999999999998888899999999873     2357887775 6899999999999633322113468999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccC
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ  115 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~  115 (151)
                      |++.+ ++++||++.              ++++++....
T Consensus        92 d~~~~-~~~~iG~~~--------------i~l~~l~~~~  115 (123)
T cd04035          92 DEDRF-GNDFLGETR--------------IPLKKLKPNQ  115 (123)
T ss_pred             EcCCc-CCeeEEEEE--------------EEcccCCCCc
Confidence            99988 889999999              9999887544

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>PLN03008 Phospholipase D delta

Probab=99.77  E-value=6.7e-18  Score=139.93  Aligned_cols=123  Identities=18%  Similarity=0.297  Sum_probs=97.2

Q ss_pred             CcEEEEEEEEeeCCCCCCC------------------------------------------CCCCCEEEEEEECCee-eE
Q 047744            3 GGILEVLLVNAEGIKHTNI------------------------------------------FGTPSYYVIARCGNQE-HR   39 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~------------------------------------------~~~~dpyv~v~~~~~~-~~   39 (151)
                      +|+|.++|.+|++|++.|.                                          .+++||||++.+++++ .|
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R   92 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR   92 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence            6899999999999975221                                          2357999999998764 47


Q ss_pred             EeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcc
Q 047744           40 SKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDK  119 (151)
Q Consensus        40 T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~  119 (151)
                      |++.+ ++.||+|||+|.|.+...    ...|.|+|||+|.++. ++||++.              +|+.++...... .
T Consensus        93 TrVi~-n~~NPvWNE~F~f~vah~----~s~L~f~VkD~D~~ga-D~IG~a~--------------IPL~~L~~Ge~v-d  151 (868)
T PLN03008         93 TRVLK-NSQEPLWDEKFNISIAHP----FAYLEFQVKDDDVFGA-QIIGTAK--------------IPVRDIASGERI-S  151 (868)
T ss_pred             EEeCC-CCCCCCcceeEEEEecCC----CceEEEEEEcCCccCC-ceeEEEE--------------EEHHHcCCCCce-E
Confidence            87764 689999999999998873    4689999999999974 7999999              999998876555 6


Q ss_pred             eeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744          120 ELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus       120 ~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      .|+.|....-    +..+..|+|.|+++|.|
T Consensus       152 ~Wl~Ll~~~~----kp~k~~~kl~v~lqf~p  178 (868)
T PLN03008        152 GWFPVLGASG----KPPKAETAIFIDMKFTP  178 (868)
T ss_pred             EEEEccccCC----CCCCCCcEEEEEEEEEE
Confidence            7777653321    12334589999999987

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.77  E-value=2.3e-17  Score=110.53  Aligned_cols=115  Identities=15%  Similarity=0.276  Sum_probs=87.4

Q ss_pred             EEEEEEEEeeCCCCCC--CCCCCCEEEEEEEC------CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            5 ILEVLLVNAEGIKHTN--IFGTPSYYVIARCG------NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~--~~~~~dpyv~v~~~------~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      .|+|+|++|++|+..+  ..+..||||++++.      ....+|++....+.||.|||+|.|.+...+   ...|.|+||
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V~   79 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVVY   79 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEEE
Confidence            6899999999999887  57789999999983      455788776644459999999999987543   357999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCC--ccceEEEEEEEE
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDD--TYKGQIVIGFKF  148 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~G~i~~~~~~  148 (151)
                      |++.. ++++||++.              +++.++.. +   ..+..|.       .+.+  ...|.|.+.+++
T Consensus        80 d~~~~-~~~~iG~~~--------------~~l~~l~~-g---~~~~~l~-------~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          80 DEDSG-DDDFLGQAC--------------LPLDSLRQ-G---YRHVPLL-------DSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             eCCCC-CCcEeEEEE--------------EEhHHhcC-c---eEEEEec-------CCCCCCCcceeEEEEEEE
Confidence            99987 899999999              99888732 1   1233332       2233  346888888765

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.76  E-value=4.8e-17  Score=111.33  Aligned_cols=122  Identities=16%  Similarity=0.211  Sum_probs=92.6

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeee-EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCC-C
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEH-RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTEL-L   81 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~-~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~-~   81 (151)
                      ..|.|.|++|++|+.++     +|||.+.+++... ||++.. ++.||.|+|.|.|....    ....|.|.||+.+. .
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~-~~~nP~W~E~F~f~~~~----~~~~l~v~v~k~~~~~   80 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKL-KTDTLFWGEHFEFSNLP----PVSVITVNLYRESDKK   80 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEc-CCCCCcceeeEEecCCC----cccEEEEEEEEccCcc
Confidence            57899999999998765     7999999999874 887765 68999999999996554    23679999987643 2


Q ss_pred             C---CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecccccee---cCCCccceEEEEEEEEEe
Q 047744           82 T---DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVL---LEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        82 ~---~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~i~~~~~~~~  150 (151)
                      +   ++++||.+.              ||+.++...... +.|+.+.+..-.-.   .......|.|+|.++|.+
T Consensus        81 ~~~~~~~~IG~V~--------------Ip~~~l~~~~~v-e~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~  140 (146)
T cd04013          81 KKKDKSQLIGTVN--------------IPVTDVSSRQFV-EKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS  140 (146)
T ss_pred             ccccCCcEEEEEE--------------EEHHHhcCCCcc-cEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence            2   578999999              999999865554 88988876543210   000123489999999975

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.76  E-value=3.1e-18  Score=115.58  Aligned_cols=93  Identities=15%  Similarity=0.217  Sum_probs=78.4

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+...     ..+|++.. ++.||.|||+|.|.+.... +....|.|+||
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~-l~~~~l~~~v~   89 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQ-LEEVSLVITVV   89 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee-cCCCCeeeeeEEEECCHHH-hCCcEEEEEEE
Confidence            35899999999999999888889999999988542     45677665 6899999999999987632 12478999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCc
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGG  110 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~  110 (151)
                      |.+.++++++||++.              +++++
T Consensus        90 d~~~~~~~~~lG~~~--------------i~l~~  109 (134)
T cd00276          90 DKDSVGRNEVIGQVV--------------LGPDS  109 (134)
T ss_pred             ecCCCCCCceeEEEE--------------ECCCC
Confidence            999888999999999              88888

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.75  E-value=4.5e-17  Score=107.22  Aligned_cols=75  Identities=16%  Similarity=0.330  Sum_probs=63.4

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC--
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT--   78 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~--   78 (151)
                      |.|+|++|+||+     +.+||||.+.+..     ...+|++++ ++.||+|||+|.|++..     ...|.+.|||+  
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~-~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~   69 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCR-DTTEPNWNEEFEIELEG-----SQTLRILCYEKCY   69 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeec-CCCCCccceEEEEEeCC-----CCEEEEEEEEccc
Confidence            689999999996     3589999998853     347888875 69999999999999864     46999999998  


Q ss_pred             -----CCCCCCcccEEEE
Q 047744           79 -----ELLTDGGFVGETV   91 (151)
Q Consensus        79 -----~~~~~d~~iG~~~   91 (151)
                           +..+.|+.||.+.
T Consensus        70 ~~~~~d~~~~d~~~G~g~   87 (118)
T cd08686          70 SKVKLDGEGTDAIMGKGQ   87 (118)
T ss_pred             ccccccccCcccEEEEEE
Confidence                 4668899998888

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.71  E-value=2.2e-16  Score=103.37  Aligned_cols=91  Identities=13%  Similarity=0.193  Sum_probs=71.8

Q ss_pred             EEEEEeeCCCCCCCCCCCCEEEEEEECCe------eeEEeeeeCCCCCCeeceEEEEEEeCCC-ccccceEEEEEEECCC
Q 047744            8 VLLVNAEGIKHTNIFGTPSYYVIARCGNQ------EHRSKNSMVKGEKAWWNEKFIFEFPMSD-WKLLTHIKFRIMDTEL   80 (151)
Q Consensus         8 V~v~~a~~L~~~~~~~~~dpyv~v~~~~~------~~~T~~~~~~~~nP~wne~f~f~v~~~~-~~~~~~L~v~v~d~~~   80 (151)
                      +..++|++|+..+..+.+||||++.+.+.      .++|++++ ++.||+|| +|.|...... ......|.|+|||++.
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIK-NTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEec-cCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            45679999999999999999999987543      47888776 68999999 6766543211 0025789999999999


Q ss_pred             CCCCcccEEEEEeccccccccceeeeecCccccc
Q 047744           81 LTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD  114 (151)
Q Consensus        81 ~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~  114 (151)
                      +++|++||++.              ++++++...
T Consensus        82 ~~~d~~iG~~~--------------~~l~~l~~~  101 (110)
T cd04047          82 SGKHDLIGEFE--------------TTLDELLKS  101 (110)
T ss_pred             CCCCcEEEEEE--------------EEHHHHhcC
Confidence            99999999999              888888743

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.68  E-value=3.2e-16  Score=97.11  Aligned_cols=82  Identities=23%  Similarity=0.431  Sum_probs=70.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      |+|+|++|++|+..+..+..+||+++.+.+   ...+|++.. ++.+|.|+|+|.|.+...+   ...|.|+|||.+..+
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~---~~~l~~~V~~~~~~~   76 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKK-NTSNPVWNEEFEFPLDDPD---LDSLSFEVWDKDSFG   76 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBS-SBSSEEEEEEEEEEESHGC---GTEEEEEEEEETSSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeee-ccccceeeeeeeeeeeccc---ccceEEEEEECCCCC
Confidence            789999999999988788999999999976   557787765 5799999999999976654   345999999999999


Q ss_pred             CCcccEEEE
Q 047744           83 DGGFVGETV   91 (151)
Q Consensus        83 ~d~~iG~~~   91 (151)
                      +|++||++.
T Consensus        77 ~~~~iG~~~   85 (85)
T PF00168_consen   77 KDELIGEVK   85 (85)
T ss_dssp             SEEEEEEEE
T ss_pred             CCCEEEEEC
Confidence            899999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.58  E-value=8.5e-15  Score=118.53  Aligned_cols=122  Identities=16%  Similarity=0.290  Sum_probs=105.4

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      ...|.|.|.+|++|+..+..|..||||.+.++... .||.++- +++.|.|.|.|.|+++.    .-+.|.|.|||.| +
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~----~F~~l~fYv~D~d-~   77 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPR----TFRYLSFYVWDRD-L   77 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCc----ceeeEEEEEeccc-c
Confidence            35789999999999999999999999999998654 6777664 69999999999999987    5689999999999 9


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      ++|+.||.+.              |.=+++..-... +.|+.|+|.     +++.+..|+|++++.+.+
T Consensus        78 ~~D~~IGKva--------------i~re~l~~~~~~-d~W~~L~~V-----D~dsEVQG~v~l~l~~~e  126 (800)
T KOG2059|consen   78 KRDDIIGKVA--------------IKREDLHMYPGK-DTWFSLQPV-----DPDSEVQGKVHLELALTE  126 (800)
T ss_pred             ccccccceee--------------eeHHHHhhCCCC-ccceecccc-----CCChhhceeEEEEEEecc
Confidence            9999999999              888888765554 899999876     367789999999998854

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=7.1e-15  Score=118.64  Aligned_cols=118  Identities=22%  Similarity=0.346  Sum_probs=92.2

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC-
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL-   81 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~-   81 (151)
                      ...+.++|++|+||..+|..|++||||...++..+++|+++. +.+||+|||.|.|+.+++    ...+++.|||.|.. 
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~-~~lnpvw~ekfhfechns----tdrikvrvwded~dl  368 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIH-QELNPVWNEKFHFECHNS----TDRIKVRVWDEDNDL  368 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhh-hccchhhhhheeeeecCC----CceeEEEEecCcccH
Confidence            346789999999999999999999999999998888998876 589999999999999985    46899999998742 


Q ss_pred             ----------CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEE
Q 047744           82 ----------TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFK  147 (151)
Q Consensus        82 ----------~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~  147 (151)
                                .+|||+|+..              |.+..+.  +.. +-|+.|..+.-     +.-..|-|++.+.
T Consensus       369 ksklrqkl~resddflgqtv--------------ievrtls--gem-dvwynlekrtd-----ksavsgairlhis  422 (1283)
T KOG1011|consen  369 KSKLRQKLTRESDDFLGQTV--------------IEVRTLS--GEM-DVWYNLEKRTD-----KSAVSGAIRLHIS  422 (1283)
T ss_pred             HHHHHHHhhhccccccccee--------------EEEEecc--cch-hhhcchhhccc-----hhhccceEEEEEE
Confidence                      4689999999              8777763  333 56776654432     1123466655543

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.55  E-value=1.3e-13  Score=92.95  Aligned_cols=86  Identities=19%  Similarity=0.404  Sum_probs=69.0

Q ss_pred             EEEEEEEEeeCCCCC--CCCCC--CCEEEEEEECC---eeeEEeeeeCCCCC--CeeceEEEEEEeCC------------
Q 047744            5 ILEVLLVNAEGIKHT--NIFGT--PSYYVIARCGN---QEHRSKNSMVKGEK--AWWNEKFIFEFPMS------------   63 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~--~~~~~--~dpyv~v~~~~---~~~~T~~~~~~~~n--P~wne~f~f~v~~~------------   63 (151)
                      .|+|.|.+|++++..  +..|.  +||||+..+.+   .+++|.++. ++.|  |.||+.|.|.+...            
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHy-rslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~   79 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHY-RSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE   79 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEE-ecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence            389999999996543  33564  99999998865   457888876 6888  99999999977652            


Q ss_pred             --------CccccceEEEEEEECCCCCCCcccEEEE
Q 047744           64 --------DWKLLTHIKFRIMDTELLTDGGFVGETV   91 (151)
Q Consensus        64 --------~~~~~~~L~v~v~d~~~~~~d~~iG~~~   91 (151)
                              +.+....|.+.|||.|.+++|++||+++
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~  115 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLE  115 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECcccCCCCcceEEE
Confidence                    1124578999999999999999999999

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.54  E-value=1.4e-13  Score=87.08  Aligned_cols=92  Identities=21%  Similarity=0.420  Sum_probs=76.8

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe---eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ---EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      +|.|.|++|++|......+..+|||++.+...   ..+|+... ++.+|.|||.|.|.+....   ...|.|+|||.+..
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~   76 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRF   76 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEec-CCCCCcccceEEEEecCcc---cCEEEEEEEecCCc
Confidence            47899999999988876667999999999765   67787765 5679999999999887631   57899999999987


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCccccc
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD  114 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~  114 (151)
                      +.+.++|.+.              +++.++...
T Consensus        77 ~~~~~~G~~~--------------~~l~~~~~~   95 (101)
T smart00239       77 GRDDFIGQVT--------------IPLSDLLLG   95 (101)
T ss_pred             cCCceeEEEE--------------EEHHHcccC
Confidence            7889999999              887777543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.53  E-value=7.7e-14  Score=118.19  Aligned_cols=122  Identities=20%  Similarity=0.360  Sum_probs=99.8

Q ss_pred             CCcEEEEEEEEeeCCCCCC--CCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            2 KGGILEVLLVNAEGIKHTN--IFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~--~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      +.|+|.|+|.+|++|+..+  ..+..|||+.+..... ..||++.+ ++.||+|||+|...+..    ..+.|.++|||.
T Consensus       434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~-nt~nPvwNEt~Yi~lns----~~d~L~LslyD~  508 (1227)
T COG5038         434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKK-NTLNPVWNETFYILLNS----FTDPLNLSLYDF  508 (1227)
T ss_pred             eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceee-ccCCccccceEEEEecc----cCCceeEEEEec
Confidence            5699999999999999888  5678999999987543 34777765 69999999999887775    568999999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      +.+.+|+.+|.+.              ++|..+..+...       ....|.++ .+.+..|++...++|.|
T Consensus       509 n~~~sd~vvG~~~--------------l~L~~L~~~~~~-------~ne~~e~~-~~~k~vGrL~yDl~ffp  558 (1227)
T COG5038         509 NSFKSDKVVGSTQ--------------LDLALLHQNPVK-------KNELYEFL-RNTKNVGRLTYDLRFFP  558 (1227)
T ss_pred             cccCCcceeeeEE--------------echHHhhhcccc-------ccceeeee-ccCccceEEEEeeeeec
Confidence            9899999999999              999998876655       12233333 46778899999999987

>cd00030 C2 C2 domain

Probab=99.52  E-value=2.8e-13  Score=85.33  Aligned_cols=89  Identities=21%  Similarity=0.375  Sum_probs=75.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECC-eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN-QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG   84 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d   84 (151)
                      |.|.|++|++|.........+|||.+.+.. ...+|.... ++.||.|+|.|.|.+...   ....|.|+||+.+..+.+
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~-~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~~~   76 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFSKD   76 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeC-CCCCCcccceEEEEccCC---CCCEEEEEEEecCCCCCC
Confidence            578999999998766667899999999987 777787665 579999999999988762   246899999999988888


Q ss_pred             cccEEEEEeccccccccceeeeecCccc
Q 047744           85 GFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      ++||.+.              +++..+.
T Consensus        77 ~~ig~~~--------------~~l~~l~   90 (102)
T cd00030          77 DFLGEVE--------------IPLSELL   90 (102)
T ss_pred             ceeEEEE--------------EeHHHhh
Confidence            9999999              8877776

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=7.6e-14  Score=110.49  Aligned_cols=88  Identities=19%  Similarity=0.375  Sum_probs=74.1

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      +.|.|.|.|++|++|+..+..+..||||++.+..     .+++|.+ +.++.||+|||+|.|.++... +....|.++||
T Consensus       296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~-~~~~~npv~nesf~F~vp~~~-l~~~~l~l~V~  373 (421)
T KOG1028|consen  296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSV-KKKTLNPVFNETFVFDVPPEQ-LAEVSLELTVW  373 (421)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeec-ccCCCCCcccccEEEeCCHHH-hheeEEEEEEE
Confidence            3689999999999999999999999999997632     2344544 457999999999999888644 35668999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++.++++++||.+.
T Consensus       374 d~d~~~~~~~iG~~~  388 (421)
T KOG1028|consen  374 DHDTLGSNDLIGRCI  388 (421)
T ss_pred             EcccccccceeeEEE
Confidence            999999999999888

>PLN02223 phosphoinositide phospholipase C

Probab=99.47  E-value=1.6e-12  Score=104.31  Aligned_cols=91  Identities=25%  Similarity=0.402  Sum_probs=73.3

Q ss_pred             cEEEEEEEEeeCCCC-----CCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEE
Q 047744            4 GILEVLLVNAEGIKH-----TNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKF   73 (151)
Q Consensus         4 g~L~V~v~~a~~L~~-----~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v   73 (151)
                      .+|.|+|++|++++.     .+.....||||++.+.+     ...+|+ +.+++.||+|||+|.|.+..++   -..|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~-v~nNg~nPvWne~F~F~i~~PE---LAlLrf  484 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTT-VKNNEWKPTWGEEFTFPLTYPD---LALISF  484 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEE-eCCCCcCceecceeEEEEEccC---ceEEEE
Confidence            579999999998741     12335689999999854     245564 5578999999999999988764   367999


Q ss_pred             EEEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744           74 RIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        74 ~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      +|+|+|..+.|+|+|+..              +|+..+.
T Consensus       485 ~V~D~D~~~~ddfiGQ~~--------------LPv~~Lr  509 (537)
T PLN02223        485 EVYDYEVSTADAFCGQTC--------------LPVSELI  509 (537)
T ss_pred             EEEecCCCCCCcEEEEEe--------------cchHHhc
Confidence            999999888999999999              8888885

>PLN02952 phosphoinositide phospholipase C

Probab=99.40  E-value=9.1e-12  Score=101.64  Aligned_cols=92  Identities=16%  Similarity=0.337  Sum_probs=73.3

Q ss_pred             CcEEEEEEEEeeCCCCC------CCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceE
Q 047744            3 GGILEVLLVNAEGIKHT------NIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHI   71 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~------~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L   71 (151)
                      ..+|.|+|++|++++..      +.....||||++.+.+     .+.+|+++. ++.||+|||+|.|.+..++   -..|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~-nN~nPvWnE~F~F~i~~PE---LAll  544 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIE-DNWYPAWNEEFSFPLTVPE---LALL  544 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeecc-CCCCcccCCeeEEEEEcCC---ccEE
Confidence            35799999999887421      1223469999998753     456788776 4699999999999888754   3578


Q ss_pred             EEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744           72 KFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        72 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      +|+|||+|..+.++|+|++.              +|+..+.
T Consensus       545 rf~V~D~D~~~~ddfiGq~~--------------lPv~~Lr  571 (599)
T PLN02952        545 RIEVREYDMSEKDDFGGQTC--------------LPVSELR  571 (599)
T ss_pred             EEEEEecCCCCCCCeEEEEE--------------cchhHhc
Confidence            99999999888999999999              9988885

>PLN02270 phospholipase D alpha

Probab=99.39  E-value=9.3e-12  Score=103.67  Aligned_cols=121  Identities=13%  Similarity=0.252  Sum_probs=94.8

Q ss_pred             CcEEEEEEEEeeCCCCCC------------------CCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCC
Q 047744            3 GGILEVLLVNAEGIKHTN------------------IFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMS   63 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~------------------~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~   63 (151)
                      +|+|.|+|.+|++|++.+                  ..+.+||||.+.+.+.+ .||+++.+...||.|+|.|...+.. 
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah-   85 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH-   85 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc-
Confidence            799999999999998621                  01357999999998765 5888775435799999999998877 


Q ss_pred             CccccceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccc---e
Q 047744           64 DWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYK---G  140 (151)
Q Consensus        64 ~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---G  140 (151)
                         ....+.|+|.|.+.++.. +||.+.              +|+.++++.... ++|+.+.       ..++++.   .
T Consensus        86 ---~~~~v~f~vkd~~~~g~~-~ig~~~--------------~p~~~~~~g~~i-~~~~~~~-------~~~~~p~~~~~  139 (808)
T PLN02270         86 ---MASNIIFTVKDDNPIGAT-LIGRAY--------------IPVEEILDGEEV-DRWVEIL-------DNDKNPIHGGS  139 (808)
T ss_pred             ---CcceEEEEEecCCccCce-EEEEEE--------------EEHHHhcCCCcc-ccEEecc-------CCCCCcCCCCC
Confidence               347899999999988764 999999              999999876654 7776654       3344432   4


Q ss_pred             EEEEEEEEEe
Q 047744          141 QIVIGFKFIV  150 (151)
Q Consensus       141 ~i~~~~~~~~  150 (151)
                      +|.++++|.|
T Consensus       140 ~~~~~~~f~~  149 (808)
T PLN02270        140 KIHVKLQYFE  149 (808)
T ss_pred             EEEEEEEEEE
Confidence            8999999986

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.38  E-value=6.8e-12  Score=102.93  Aligned_cols=91  Identities=19%  Similarity=0.375  Sum_probs=76.1

Q ss_pred             EEEEEEEEeeCCCC-CCCC---CCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            5 ILEVLLVNAEGIKH-TNIF---GTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         5 ~L~V~v~~a~~L~~-~~~~---~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      +|.|.|++++++.. .+..   ...||||.+++.+     ...+|+++++++-||.|+|+|.|.+..++   -.-|+|.|
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE---LAliRF~V  693 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE---LALIRFEV  693 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc---eeEEEEEE
Confidence            79999999996643 3322   3489999998865     35789888889999999999999998875   36799999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      +|+|..++|+|+|++.              +|+..+.
T Consensus       694 ~d~d~~~~ddF~GQ~t--------------lP~~~L~  716 (746)
T KOG0169|consen  694 HDYDYIGKDDFIGQTT--------------LPVSELR  716 (746)
T ss_pred             EecCCCCcccccceee--------------ccHHHhh
Confidence            9999999999999999              8888885

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.35  E-value=2.2e-11  Score=99.35  Aligned_cols=92  Identities=17%  Similarity=0.368  Sum_probs=73.3

Q ss_pred             CcEEEEEEEEeeCCCC--C----CCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceE
Q 047744            3 GGILEVLLVNAEGIKH--T----NIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHI   71 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~--~----~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L   71 (151)
                      ..+|.|+|+.+++++.  .    +.....||||++.+.+     .+.+|++. +++.||.|||+|.|.+..++   -..|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~-~n~~nP~Wneef~F~l~vPE---LAll  543 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIE-YDTWTPIWNKEFIFPLAVPE---LALL  543 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceecc-CCCCCCccCCeeEEEEEcCc---eeEE
Confidence            3589999999998641  1    2234579999998843     34577754 57899999999999887754   3789


Q ss_pred             EEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744           72 KFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        72 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      +|+|+|+|..++|+|+|+..              +|+..+.
T Consensus       544 Rf~V~d~d~~~~ddfiGQ~~--------------lPv~~Lr  570 (598)
T PLN02230        544 RVEVHEHDINEKDDFGGQTC--------------LPVSEIR  570 (598)
T ss_pred             EEEEEECCCCCCCCEEEEEE--------------cchHHhh
Confidence            99999999888999999999              8888885

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.33  E-value=6.3e-12  Score=106.82  Aligned_cols=92  Identities=16%  Similarity=0.230  Sum_probs=79.0

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      .|-|.|.+.+|.+|+..+..|.+||||++.+.++ .++|++++ +++||+|||.+..++...   ....+.+.|+|+|..
T Consensus      1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~K-ktlNPvwNEe~~i~v~~r---~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038        1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVK-KTLNPVWNEEFTIEVLNR---VKDVLTINVNDWDSG 1114 (1227)
T ss_pred             cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchh-ccCCCCccccceEeeecc---ccceEEEEEeecccC
Confidence            5889999999999999999999999999999877 46776665 799999999999998863   356899999999998


Q ss_pred             CCCcccEEEEEeccccc
Q 047744           82 TDGGFVGETVFSYIHDQ   98 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~   98 (151)
                      .+++.||.+.+++..+.
T Consensus      1115 ~knd~lg~~~idL~~l~ 1131 (1227)
T COG5038        1115 EKNDLLGTAEIDLSKLE 1131 (1227)
T ss_pred             CCccccccccccHhhcC
Confidence            99999999995555444

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.30  E-value=1.1e-11  Score=79.44  Aligned_cols=84  Identities=20%  Similarity=0.260  Sum_probs=67.8

Q ss_pred             EEEEEEEeeCCCCCC---CCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            6 LEVLLVNAEGIKHTN---IFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         6 L~V~v~~a~~L~~~~---~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      |.|+|.+|+++....   +.+++||||.+++++. +.||+.    +.||.|||.|.|++.     ....+.+.|||... 
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vd-----k~nEiel~VyDk~~-   70 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVE-----KNNEEEVIVYDKGG-   70 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEec-----CCcEEEEEEEeCCC-
Confidence            679999999998877   5678999999999877 667754    479999999999995     34789999999853 


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccc
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT  113 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~  113 (151)
                      ...--||..-              +.++++..
T Consensus        71 ~~~~Pi~llW--------------~~~sdi~E   88 (109)
T cd08689          71 DQPVPVGLLW--------------LRLSDIAE   88 (109)
T ss_pred             Ceecceeeeh--------------hhHHHHHH
Confidence            3334688888              88888763

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.29  E-value=1.2e-10  Score=94.80  Aligned_cols=92  Identities=17%  Similarity=0.322  Sum_probs=73.0

Q ss_pred             CcEEEEEEEEeeCCC----C--CCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceE
Q 047744            3 GGILEVLLVNAEGIK----H--TNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHI   71 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~----~--~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L   71 (151)
                      ..+|.|+|+.++++.    .  .+.....||||++.+.+     .+.+|+++.+ +.||.|||+|.|.+..++   -..|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~Pe---LAll  526 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPE---LALL  526 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCc---eeEE
Confidence            357999999998752    1  12234589999998853     4568888764 589999999999887754   3689


Q ss_pred             EEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744           72 KFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        72 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      +|.|||+|..+.|+|+|+..              +|+..+.
T Consensus       527 Rf~V~d~D~~~~ddfigq~~--------------lPv~~Lr  553 (581)
T PLN02222        527 RLEVHEYDMSEKDDFGGQTC--------------LPVWELS  553 (581)
T ss_pred             EEEEEECCCCCCCcEEEEEE--------------cchhhhh
Confidence            99999999888899999999              9988885

>PLN02228 Phosphoinositide phospholipase C

Probab=99.28  E-value=1.4e-10  Score=94.17  Aligned_cols=117  Identities=18%  Similarity=0.362  Sum_probs=84.1

Q ss_pred             cEEEEEEEEeeCCCC---C---CCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCee-ceEEEEEEeCCCccccceE
Q 047744            4 GILEVLLVNAEGIKH---T---NIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWW-NEKFIFEFPMSDWKLLTHI   71 (151)
Q Consensus         4 g~L~V~v~~a~~L~~---~---~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~w-ne~f~f~v~~~~~~~~~~L   71 (151)
                      ..|.|+|++|++|+.   .   +.....||||++.+.+     .+.+|+++. ++.||.| ||+|.|.+..++   -..|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~-n~~nP~W~~e~f~F~~~~pE---LA~l  506 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAV-DQWFPIWGNDEFLFQLRVPE---LALL  506 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccC-CCCCceECCCeEEEEEEcCc---eeEE
Confidence            469999999998721   1   1233589999998743     346888775 5789999 999999887754   3689


Q ss_pred             EEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCc--cceEEEEEEEEE
Q 047744           72 KFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT--YKGQIVIGFKFI  149 (151)
Q Consensus        72 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~G~i~~~~~~~  149 (151)
                      +|.|+|+|..+.|+|+|+..              +|+..+.      .|+..++     +....|.  ....|.+.+.+.
T Consensus       507 Rf~V~D~d~~~~d~figq~~--------------lPv~~Lr------~GYR~Vp-----L~~~~G~~l~~atLfv~~~~~  561 (567)
T PLN02228        507 WFKVQDYDNDTQNDFAGQTC--------------LPLPELK------SGVRAVR-----LHDRAGKAYKNTRLLVSFALD  561 (567)
T ss_pred             EEEEEeCCCCCCCCEEEEEE--------------cchhHhh------CCeeEEE-----ccCCCCCCCCCeEEEEEEEEc
Confidence            99999999888999999999              9998884      3444432     1122333  235677776654

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.22  E-value=8e-11  Score=97.33  Aligned_cols=92  Identities=16%  Similarity=0.339  Sum_probs=74.8

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeec-eEEEEEEeCCCccccceEEEEEEEC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWN-EKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wn-e~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      +|.|.|+.|++|+... .|-..|||.+.+-     ..+++|+++..+++||+|| |.|.|++..++   -..|+|.|+|.
T Consensus      1066 ~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVYEE 1141 (1267)
T ss_pred             EEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEecc
Confidence            6789999999998554 3446799999874     4567788888899999999 99999999875   47899999999


Q ss_pred             CCCCCCcccEEEEEeccccccc
Q 047744           79 ELLTDGGFVGETVFSYIHDQTS  100 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~  100 (151)
                      |.++...|||++.+.+..+.+|
T Consensus      1142 Dmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             cccCCcceeeeeecchhhhhcc
Confidence            9999888999999444444333

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.18  E-value=8.1e-11  Score=94.65  Aligned_cols=123  Identities=15%  Similarity=0.210  Sum_probs=96.4

Q ss_pred             CcEEEEEEEEeeCCCCCCCCC-CCCEEEEEEECCeeeEEeeeeCCCCCCeece-EEEEEEeCCCccccceEEEEEEECCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFG-TPSYYVIARCGNQEHRSKNSMVKGEKAWWNE-KFIFEFPMSDWKLLTHIKFRIMDTEL   80 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~-~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne-~f~f~v~~~~~~~~~~L~v~v~d~~~   80 (151)
                      -|.|-|.|..|++|+..|..+ ..|.||.+++.+..++|.+.. +++||.||- =|.|++...+ +.++.|.+++.|+|.
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~-kslnp~wnsdwfkfevddad-lqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFL-KSLNPQWNSDWFKFEVDDAD-LQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhh-hhcCCcccccceEEecChhh-hccCCeeEEEecccc
Confidence            378999999999999988765 479999999999999998876 699999995 5899998755 478899999999999


Q ss_pred             CCCCcccEEEEEeccccccccceeeeecCcccccC---------CCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           81 LTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ---------SNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        81 ~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      .+.+|.||.+.              |++..+.-+.         ....+|+.+...       -...+|||.+-++.
T Consensus        80 ysandaigkv~--------------i~idpl~~e~aaqavhgkgtvisgw~pifdt-------ihgirgeinvivkv  135 (1169)
T KOG1031|consen   80 YSANDAIGKVN--------------IDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-------IHGIRGEINVIVKV  135 (1169)
T ss_pred             cccccccceee--------------eccChHHHHhHHhhhcCCceEEeeeeeccee-------cccccceeEEEEEE
Confidence            99999999999              7777664221         112456554322       23367999887653

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.16  E-value=1e-10  Score=95.25  Aligned_cols=124  Identities=14%  Similarity=0.171  Sum_probs=90.1

Q ss_pred             EEEeeCCCCCCCCCCCCEEEEEEECCee----eEEeeeeCCCCCCeeceEEEEEEeCCC------------ccccceEEE
Q 047744           10 LVNAEGIKHTNIFGTPSYYVIARCGNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSD------------WKLLTHIKF   73 (151)
Q Consensus        10 v~~a~~L~~~~~~~~~dpyv~v~~~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~------------~~~~~~L~v   73 (151)
                      +++++++.+.. .+.+|||+++...+..    .+|++.+ ++.+|.|+|.|.|++....            ......|++
T Consensus       137 ~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv  214 (800)
T KOG2059|consen  137 VLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRV  214 (800)
T ss_pred             hhhhcccCcee-CCCCCcceEEeecccchhhccccceee-eccCcchhhheeeeeccccccccchhcCcccCCceeeEEE
Confidence            34455555544 3459999999876544    3777665 6999999999999876540            001356889


Q ss_pred             EEEE-CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           74 RIMD-TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        74 ~v~d-~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      ++|+ ++.+..++|+|++.              +++..+....+. .+|+.|+|+.-.-...++.--|.+++.++|+.
T Consensus       215 ~lW~~~~~~~~~~FlGevr--------------v~v~~~~~~s~p-~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~  277 (800)
T KOG2059|consen  215 DLWNDLNLVINDVFLGEVR--------------VPVDVLRQKSSP-AAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE  277 (800)
T ss_pred             eeccchhhhhhhhhceeEE--------------eehhhhhhccCc-cceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence            9999 56666799999999              999888755554 89999999864433334556699999998863

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.10  E-value=3.2e-11  Score=98.63  Aligned_cols=88  Identities=20%  Similarity=0.315  Sum_probs=74.8

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-------eeEEeeeeCCCCCCeeceEEEEEEeCCCcc-ccceEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-------EHRSKNSMVKGEKAWWNEKFIFEFPMSDWK-LLTHIKFR   74 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~~~~nP~wne~f~f~v~~~~~~-~~~~L~v~   74 (151)
                      ..+|.|.|+-|+++.+-|..|-+||||++.+...       .++|+++. +++||+|+|.|.|.++..... ....|.|+
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~-rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVS-RTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhh-ccccchhhhheeeecCccccccccceEEEE
Confidence            4577888899999999999999999999998653       46888775 699999999999999875432 24468999


Q ss_pred             EEECCCCCCCcccEEEE
Q 047744           75 IMDTELLTDGGFVGETV   91 (151)
Q Consensus        75 v~d~~~~~~d~~iG~~~   91 (151)
                      |+|+|-++.+||-|++-
T Consensus      1025 VMDHD~L~sNDFaGEA~ 1041 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAF 1041 (1103)
T ss_pred             eeccceecccccchHHH
Confidence            99999999999999999

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.06  E-value=3.2e-11  Score=98.68  Aligned_cols=120  Identities=18%  Similarity=0.277  Sum_probs=91.1

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECC-------------ee-----------------eEEeeeeCCCCCCeeceE
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN-------------QE-----------------HRSKNSMVKGEKAWWNEK   55 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------------~~-----------------~~T~~~~~~~~nP~wne~   55 (151)
                      +.|.+..|.+|..++..|.+|||+...+..             ++                 -+.+.++.+++||.|+|.
T Consensus       116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek  195 (1103)
T KOG1328|consen  116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK  195 (1103)
T ss_pred             HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence            345667889999999999999999875421             00                 012334567999999999


Q ss_pred             EEEEEeCCCccccceEEEEEEECCCC---------------------------------CC---CcccEEEEEecccccc
Q 047744           56 FIFEFPMSDWKLLTHIKFRIMDTELL---------------------------------TD---GGFVGETVFSYIHDQT   99 (151)
Q Consensus        56 f~f~v~~~~~~~~~~L~v~v~d~~~~---------------------------------~~---d~~iG~~~~~~~~~~~   99 (151)
                      |.|++...   ....+.+.|||+|.-                                 +.   |||+|.+.        
T Consensus       196 F~F~IeDv---~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciN--------  264 (1103)
T KOG1328|consen  196 FQFTIEDV---QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCIN--------  264 (1103)
T ss_pred             eeeehhcc---ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccc--------
Confidence            99998875   456899999998721                                 22   68888888        


Q ss_pred             ccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744          100 SVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus       100 ~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                            ||+.++...+-  +.|+.|+|++.     ..+..|.+.+.++.+
T Consensus       265 ------ipl~EiP~~Gl--d~WFkLepRS~-----~S~VqG~~~LklwLs  301 (1103)
T KOG1328|consen  265 ------IPLAEIPPDGL--DQWFKLEPRSD-----KSKVQGQVKLKLWLS  301 (1103)
T ss_pred             ------cchhcCCcchH--HHHhccCcccc-----cccccceEEEEEEEe
Confidence                  99999976664  68999999873     456789999988875

>PLN02352 phospholipase D epsilon

Probab=98.91  E-value=2.4e-08  Score=83.36  Aligned_cols=116  Identities=17%  Similarity=0.201  Sum_probs=83.5

Q ss_pred             CCcEEEEEEEEeeCCCCC----CCC-CCCCEEEEEEECCeee-EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHT----NIF-GTPSYYVIARCGNQEH-RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~----~~~-~~~dpyv~v~~~~~~~-~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      -+|+|.++|.+|+-+...    +.. ...||||.+.+++.+. ||    .+..||.|+|.|...+...   .+..+.|+|
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt----~~~~~p~w~e~f~i~~ah~---~~~~~~f~v   80 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT----SHEYDRVWNQTFQILCAHP---LDSTITITL   80 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC----CCCCCCccccceeEEeeee---cCCcEEEEE
Confidence            479999999999843221    111 1239999999987654 55    2456999999999888763   225799999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCcc-c-eEEEEEEEEEe
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTY-K-GQIVIGFKFIV  150 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~-G~i~~~~~~~~  150 (151)
                      .|     .-.+||.+.              +|+.++++.....++|+.+...       ++++ . .+|.++++|+|
T Consensus        81 k~-----~~~~ig~~~--------------~p~~~~~~g~~~~~~~~~~~~~-------~~~p~~~~~~~~~~~~~~  131 (758)
T PLN02352         81 KT-----KCSILGRFH--------------IQAHQIVTEASFINGFFPLIME-------NGKPNPELKLRFMLWFRP  131 (758)
T ss_pred             ec-----CCeEEEEEE--------------EEHHHhhCCCcccceEEEcccC-------CCCCCCCCEEEEEEEEEE
Confidence            87     247899999              9999998765523778776433       3332 2 49999999986

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.77  E-value=7e-09  Score=88.79  Aligned_cols=109  Identities=14%  Similarity=0.152  Sum_probs=86.3

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .|+|.|-|.-|++|.-..-....||||+..+..     .++||++++ ++.||.|||.+.+.-...+.+..+.|.++||.
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccc-ccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            588999999999996655566799999998853     357888886 69999999999886333333356889999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      .+.+..+.++|.+.              |+|.++.-.... .+|+.|..+
T Consensus      1602 ~~~~~en~~lg~v~--------------i~L~~~~l~kE~-~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVN--------------IPLLKVDLLKES-VGWYNLGAC 1636 (1639)
T ss_pred             ccceeeeeeeeeee--------------cchhhcchhhhh-cceeecccc
Confidence            99998999999999              999888654443 578777543

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=2.6e-09  Score=80.60  Aligned_cols=129  Identities=20%  Similarity=0.225  Sum_probs=90.8

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      ..++.+++..|.+|++.+..+..|||+.+.+...     +.+|++.. ++.||.|+|+..+..-..+......+++.|.|
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd  170 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDTHLKVLRKVVCD  170 (362)
T ss_pred             hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchhhhhhhheeecc
Confidence            3568899999999999999999999999987532     34555654 68999999987775444333355678899999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCC-ccee--eeeeccccceecCCCccceEEEEEEEE
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-DKEL--IEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~--~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      .+.+.+++++|+..              +++..+...+.. +.-|  ..+++....  +.+.+.+|+|.+++.|
T Consensus       171 n~~~~~~~sqGq~r--------------~~lkKl~p~q~k~f~~cl~~~lp~~rad--~~~~E~rg~i~isl~~  228 (362)
T KOG1013|consen  171 NDKKTHNESQGQSR--------------VSLKKLKPLQRKSFNICLEKSLPSERAD--RDEDEERGAILISLAY  228 (362)
T ss_pred             CcccccccCcccch--------------hhhhccChhhcchhhhhhhccCCccccc--ccchhhccceeeeecc
Confidence            99999999999999              666666543322 1121  122212211  2234678899888876

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.62  E-value=2.2e-08  Score=84.51  Aligned_cols=87  Identities=17%  Similarity=0.251  Sum_probs=72.1

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeee--EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEH--RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~--~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      .++|++++|.+|.+.|..|.+|||+.+.++.+..  +..-+ .+++||+|.+.|.++...+   ....+.++|||+|.++
T Consensus       614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yi-p~tlnPVfgkmfel~~~lp---~ek~l~v~vyd~D~~~  689 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYI-PNTLNPVFGKMFELECLLP---FEKDLIVEVYDHDLEA  689 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcC-cCCCCcHHHHHHHhhcccc---hhhcceeEEEEeeccc
Confidence            4679999999999999999999999999887653  33333 4699999999988766554   4578999999999999


Q ss_pred             CCcccEEEEEecc
Q 047744           83 DGGFVGETVFSYI   95 (151)
Q Consensus        83 ~d~~iG~~~~~~~   95 (151)
                      +|+.||+..+++.
T Consensus       690 ~d~~iget~iDLE  702 (1105)
T KOG1326|consen  690 QDEKIGETTIDLE  702 (1105)
T ss_pred             ccchhhceehhhh
Confidence            9999999994444

>PLN02964 phosphatidylserine decarboxylase

Probab=98.37  E-value=8.1e-07  Score=73.67  Aligned_cols=78  Identities=22%  Similarity=0.310  Sum_probs=64.3

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEE-EEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYY-VIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpy-v~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      .|...+++++|+    .+   ..|+| +.+.++.+..||...+ ++.||+||+...|.+...+   .....|.|||.+.+
T Consensus        53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~-~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  121 (644)
T PLN02964         53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSD-STDKPVWNSEKKLLLEKNG---PHLARISVFETNRL  121 (644)
T ss_pred             cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeecccc-ccCCcccchhhceEeccCC---cceEEEEEEecCCC
Confidence            477888998886    22   25886 5678889999998875 6999999999999887754   34569999999999


Q ss_pred             CCCcccEEEE
Q 047744           82 TDGGFVGETV   91 (151)
Q Consensus        82 ~~d~~iG~~~   91 (151)
                      +.++.+|.++
T Consensus       122 s~n~lv~~~e  131 (644)
T PLN02964        122 SKNTLVGYCE  131 (644)
T ss_pred             CHHHhhhhee
Confidence            9999999999

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=8.5e-07  Score=67.26  Aligned_cols=86  Identities=14%  Similarity=0.263  Sum_probs=71.4

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..|.|+++.+..|...|..+-+||||..++...     +++|.+. +++.+|.||+.|.|.+...+. ....+.++|||.
T Consensus       233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~-K~t~~p~fd~~~~~~i~pgdL-a~~kv~lsvgd~  310 (362)
T KOG1013|consen  233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQK-KKTLNPEFDEEFFYDIGPGDL-AYKKVALSVGDY  310 (362)
T ss_pred             CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcch-hccCCccccccccccCCccch-hcceEEEeeccc
Confidence            467899999999999999999999999987531     3455444 479999999999999988763 677899999999


Q ss_pred             CCCCCCcccEEEE
Q 047744           79 ELLTDGGFVGETV   91 (151)
Q Consensus        79 ~~~~~d~~iG~~~   91 (151)
                      +..+..+++|-..
T Consensus       311 ~~G~s~d~~GG~~  323 (362)
T KOG1013|consen  311 DIGKSNDSIGGSM  323 (362)
T ss_pred             CCCcCccCCCccc
Confidence            9877889998777

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.19  E-value=3.4e-06  Score=56.14  Aligned_cols=103  Identities=14%  Similarity=0.158  Sum_probs=70.9

Q ss_pred             EEEEEEEeeCCCCCC---------C----CCCCCEEEEEEEC----CeeeEEeeeeCCCCCCeeceEEEEEEeC------
Q 047744            6 LEVLLVNAEGIKHTN---------I----FGTPSYYVIARCG----NQEHRSKNSMVKGEKAWWNEKFIFEFPM------   62 (151)
Q Consensus         6 L~V~v~~a~~L~~~~---------~----~~~~dpyv~v~~~----~~~~~T~~~~~~~~nP~wne~f~f~v~~------   62 (151)
                      |.|.|++|.||+..-         .    .-..++|+.+.+.    +..++|+++. ++.-|.|+..+.|..+.      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVA-rSFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVA-RSFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchh-hhcCCCccceEEEecccEEEcCC
Confidence            467888888886321         1    0137899998853    3456777775 68999999999886541      


Q ss_pred             ------CCccccceEEEEEEECCCCC----------CCcccEEEEEeccccccccceeeeecCcccccCCCcceeee
Q 047744           63 ------SDWKLLTHIKFRIMDTELLT----------DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIE  123 (151)
Q Consensus        63 ------~~~~~~~~L~v~v~d~~~~~----------~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~  123 (151)
                            -+.+....+.|+||+...-+          +|=.||.+.              ||+.+++...+...||+.
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~--------------IPl~~Ll~~rsGitGW~p  142 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVK--------------IPLRDLLTKRSGITGWYP  142 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEE--------------eeHHHHhhcccCcccccc
Confidence                  01223567889999976422          244789999              999999876655578864

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.03  E-value=4.7e-06  Score=51.87  Aligned_cols=80  Identities=14%  Similarity=0.284  Sum_probs=54.8

Q ss_pred             EEEEEeeCCCCCCCCC-CCCEEEE--EEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            8 VLLVNAEGIKHTNIFG-TPSYYVI--ARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         8 V~v~~a~~L~~~~~~~-~~dpyv~--v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      ++++.++||.-...-| ...-|++  +++.... .|| .++.+..||+|.|+|.|.+..-+ +.+..|.|+|+.  ...+
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~Ks-S~rrgs~d~~f~ETFVFqi~l~q-L~~V~L~fsv~~--~~~R   78 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKS-SAKEGSNDIEFMETFVFAIKLQN-LQTVRLVFKIQT--QTPR   78 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccc-hhhcCCCChhHHHHHHHHHHHhh-ccceEEEEEeec--cCCc
Confidence            7889999995444333 2333654  3343333 344 44557899999999999776543 256789999998  3567


Q ss_pred             CcccEEEE
Q 047744           84 GGFVGETV   91 (151)
Q Consensus        84 d~~iG~~~   91 (151)
                      .+.||.+.
T Consensus        79 Ke~iG~~s   86 (103)
T cd08684          79 KRTIGECS   86 (103)
T ss_pred             cceeeEEE
Confidence            78999999

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.99  E-value=2e-05  Score=63.60  Aligned_cols=84  Identities=12%  Similarity=0.074  Sum_probs=61.9

Q ss_pred             EEeeCCCCCCCCCCCCEEEEEEEC--C----eeeEEeeeeCCCCCCeeceEEEE--EEeCCCccccceEEEEEEECCCCC
Q 047744           11 VNAEGIKHTNIFGTPSYYVIARCG--N----QEHRSKNSMVKGEKAWWNEKFIF--EFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus        11 ~~a~~L~~~~~~~~~dpyv~v~~~--~----~~~~T~~~~~~~~nP~wne~f~f--~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      ..|+.|.+++.++++|||..+.-.  .    ..++|.+.+ ++++|.|.+...-  .+...+  .+..+.+.+||++.-+
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~-n~l~p~w~~~~i~~~~l~~~~--~~~~~~i~~~d~~~~~  219 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVK-NTLNPQWAPFSISLQSLCSKD--GNRPIQIECYDYDSNG  219 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceec-cCCCCcccccccchhhhcccC--CCCceEEEEeccCCCC
Confidence            457889999999999999877432  1    235777776 6999999974322  222222  4678999999999989


Q ss_pred             CCcccEEEEEecccc
Q 047744           83 DGGFVGETVFSYIHD   97 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~   97 (151)
                      ++++||++..++...
T Consensus       220 ~~~~ig~~~tt~~~~  234 (529)
T KOG1327|consen  220 KHDLIGKFQTTLSEL  234 (529)
T ss_pred             CcCceeEecccHHHh
Confidence            999999999444443

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.89  E-value=2.3e-06  Score=72.74  Aligned_cols=89  Identities=12%  Similarity=0.073  Sum_probs=70.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEE---EeCCC--c-cccceEEEEEEECC
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFE---FPMSD--W-KLLTHIKFRIMDTE   79 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~---v~~~~--~-~~~~~L~v~v~d~~   79 (151)
                      +++.+.+|+.|...+..+.+|||+.+.+.++.+.|.++. +++||.|+++..|.   +....  . .....+.|++||.+
T Consensus       208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d  286 (1105)
T KOG1326|consen  208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD  286 (1105)
T ss_pred             hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence            456677889998888888899999999999999998886 69999999999882   22211  0 01245779999999


Q ss_pred             CCCCCcccEEEEEecc
Q 047744           80 LLTDGGFVGETVFSYI   95 (151)
Q Consensus        80 ~~~~d~~iG~~~~~~~   95 (151)
                      ..+.++|+|.......
T Consensus       287 r~g~~ef~gr~~~~p~  302 (1105)
T KOG1326|consen  287 RSGINEFKGRKKQRPY  302 (1105)
T ss_pred             hhchHHhhcccccceE
Confidence            9999999999874444

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.86  E-value=3.1e-05  Score=65.57  Aligned_cols=78  Identities=17%  Similarity=0.385  Sum_probs=61.3

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-------eeeEEeeeeCCCCCCeece-EEEE-EEeCCCccccceEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-------QEHRSKNSMVKGEKAWWNE-KFIF-EFPMSDWKLLTHIKF   73 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~~~~nP~wne-~f~f-~v~~~~~~~~~~L~v   73 (151)
                      .+++.|+|++++-|.+++    ...||.+.+-+       ..++|+++..++.||+|+| .|.| .|-.++   -..|+|
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe---LA~lRi  774 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE---LASLRI  774 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc---hhheee
Confidence            368999999999998766    45899998743       3467888888899999997 6888 444433   468999


Q ss_pred             EEEECCCCCCCcccEEEE
Q 047744           74 RIMDTELLTDGGFVGETV   91 (151)
Q Consensus        74 ~v~d~~~~~~d~~iG~~~   91 (151)
                      .||+..    ..+||+=.
T Consensus       775 avyeEg----gK~ig~RI  788 (1189)
T KOG1265|consen  775 AVYEEG----GKFIGQRI  788 (1189)
T ss_pred             eeeccC----Cceeeeec
Confidence            999976    36999999

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.00014  Score=60.17  Aligned_cols=90  Identities=18%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-------eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-------EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+.|.+|+-. ..|.--|||.+.+-+.       ++.|+ .+.++-.|.+||+|.|-+......+...|.|.|-
T Consensus      1125 hkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TK-tKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTK-TKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred             ceEEEEEEecccccch-hccccccceEEEEecCcccchhhhcccc-ccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence            3577888999999753 3456789999977431       12232 3345677999999999776654335567888998


Q ss_pred             ECCCCCCCcccEEEEEecc
Q 047744           77 DTELLTDGGFVGETVFSYI   95 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~   95 (151)
                      |+--...|..+|.+.+.+.
T Consensus      1203 DYCFAReDRvvGl~VlqL~ 1221 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLR 1221 (1283)
T ss_pred             hheeecccceeeeeeeehh
Confidence            8764456789999993333

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=2.3e-05  Score=60.53  Aligned_cols=107  Identities=15%  Similarity=0.140  Sum_probs=78.7

Q ss_pred             CcEEEEEEEEeeCCCCCCCC-CCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIF-GTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      .|.|.|.|++|++|..+... ..++|||+|++.+.     +.+|+..+ ++.+|.+-+...|.-..    ....|.+.||
T Consensus       268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~-kT~~plyqq~l~f~~sp----~~k~Lq~tv~  342 (405)
T KOG2060|consen  268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSAR-KTLDPLYQQQLSFDQSP----PGKYLQGTVW  342 (405)
T ss_pred             cCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccccc-ccCchhhhhhhhhccCC----CccEEEEEEe
Confidence            57899999999999655432 25899999987542     35666665 58888888888887776    4578999999


Q ss_pred             E-CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccc
Q 047744           77 D-TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAP  128 (151)
Q Consensus        77 d-~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~  128 (151)
                      . .....++.|||.++              +-++++--......+|+.+-+..
T Consensus       343 gdygRmd~k~fmg~aq--------------i~l~eL~ls~~~~igwyKlfgss  381 (405)
T KOG2060|consen  343 GDYGRMDHKSFMGVAQ--------------IMLDELNLSSSPVIGWYKLFGSS  381 (405)
T ss_pred             ccccccchHHHhhHHH--------------HHhhhhccccccceeeeeccCCc
Confidence            4 55666788999999              88888754332226787776543

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.57  E-value=9.7e-05  Score=57.95  Aligned_cols=120  Identities=13%  Similarity=0.055  Sum_probs=78.6

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCcc--------ccce
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWK--------LLTH   70 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~--------~~~~   70 (151)
                      ..|++.|+++.+++...-....|-|+++.+.     .++.+|.+++ .+.+|.|+|.|..++......        ....
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceee-CCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            4456677777777554322236778887652     3556787876 589999999998877652210        1346


Q ss_pred             EEEEEEECCCCC-CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCc--cceEEEEEEE
Q 047744           71 IKFRIMDTELLT-DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT--YKGQIVIGFK  147 (151)
Q Consensus        71 L~v~v~d~~~~~-~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~G~i~~~~~  147 (151)
                      ++|+||+...|- +|.++|.+.              +.+.-+...... ++++.|         .+|+  .-|.+.+.++
T Consensus       446 ~kfeifhkggf~rSdkl~gt~n--------------ikle~Len~cei-~e~~~l---------~DGRK~vGGkLevKvR  501 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGN--------------IKLEILENMCEI-CEYLPL---------KDGRKAVGGKLEVKVR  501 (523)
T ss_pred             eeEEEeeccccccccceeceee--------------eeehhhhcccch-hhceec---------cccccccCCeeEEEEE
Confidence            899999998764 688999999              888777543333 333333         2454  3377776665


Q ss_pred             E
Q 047744          148 F  148 (151)
Q Consensus       148 ~  148 (151)
                      .
T Consensus       502 i  502 (523)
T KOG3837|consen  502 I  502 (523)
T ss_pred             E
Confidence            3

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.47  E-value=0.0024  Score=44.43  Aligned_cols=90  Identities=11%  Similarity=0.136  Sum_probs=61.6

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCeee----EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQEH----RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      ..++|++++|.++...+   ..|-||.+.+  +++..    .|+.+  ...++.|||-+.|.+...+...+..|.|+||+
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v--~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~   82 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRV--PCSNPRWNEWLDYDIYIPDLPRSARLCLSICS   82 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEeccc--CCCCCccceeEEcccchhcCChhheEEEEEEE
Confidence            46899999999887543   3678888754  34322    23222  24689999999998776655467899999999


Q ss_pred             CCCCC----CCcccEEEEEeccccc
Q 047744           78 TELLT----DGGFVGETVFSYIHDQ   98 (151)
Q Consensus        78 ~~~~~----~d~~iG~~~~~~~~~~   98 (151)
                      ...-.    ....+|.+.++++...
T Consensus        83 ~~~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          83 VKGRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             EecccCCCCceEEEEEEEEEEECCC
Confidence            75321    1246999996666544

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.41  E-value=0.0031  Score=44.52  Aligned_cols=93  Identities=14%  Similarity=0.164  Sum_probs=62.0

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCee----eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      ..++|+++.+.++...  ....+-||.+.+  +++.    ..|+... .+.++.|||.+.|++...+......|.|+||+
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~   84 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPRMARLCFAIYE   84 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence            4689999999999752  223566777643  4433    2333222 24679999999997766655467899999998


Q ss_pred             CCCCC----------------CCcccEEEEEecccccc
Q 047744           78 TELLT----------------DGGFVGETVFSYIHDQT   99 (151)
Q Consensus        78 ~~~~~----------------~d~~iG~~~~~~~~~~~   99 (151)
                      .....                .+..||.+.+.++....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~  122 (173)
T cd08693          85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG  122 (173)
T ss_pred             ecccccccccccccccccccCcceEEEEEeEEEEcccc
Confidence            65321                13579999966665443

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.29  E-value=0.0054  Score=42.43  Aligned_cols=130  Identities=16%  Similarity=0.198  Sum_probs=81.7

Q ss_pred             cEEEEEEEEeeCCCCCCCC--CCCCE--EEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCc----------cccc
Q 047744            4 GILEVLLVNAEGIKHTNIF--GTPSY--YVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDW----------KLLT   69 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~--~~~dp--yv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~----------~~~~   69 (151)
                      .-|++.|..++-....-..  +..+.  .+-+.+.+|.++|+.+. .+.+|.|+|.|.|+++....          ...+
T Consensus         9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~   87 (156)
T PF15627_consen    9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLSISD   87 (156)
T ss_pred             eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence            4577777776543221110  23333  34456688999998885 68999999999998876420          0134


Q ss_pred             eEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           70 HIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        70 ~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      .+.+.|...+..+...++|...              ++...+...+.. .-...++..-  +..+..-..|-|.+.+...
T Consensus        88 pihivli~~d~~~~~~Lv~s~~--------------ldWR~vL~s~~~-~~~~~vEL~G--~~~e~kv~~GiL~l~lELl  150 (156)
T PF15627_consen   88 PIHIVLIRTDPSGETTLVGSHF--------------LDWRKVLCSGNG-STSFTVELCG--VGPESKVPVGILDLRLELL  150 (156)
T ss_pred             ceEEEEEEecCCCceEeeeece--------------ehHHHHhccCCC-ccceeEEEec--cCCCCccceeEEEEEEEee
Confidence            6778887777777678999999              777777765542 1111111110  0011223779999999998


Q ss_pred             eC
Q 047744          150 VN  151 (151)
Q Consensus       150 ~~  151 (151)
                      |+
T Consensus       151 P~  152 (156)
T PF15627_consen  151 PN  152 (156)
T ss_pred             cC
Confidence            85

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.21  E-value=0.0032  Score=44.26  Aligned_cols=96  Identities=14%  Similarity=0.157  Sum_probs=63.9

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCeee----EEeee---eCCCCCCeeceEEEEEEeCCCccccceEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQEH----RSKNS---MVKGEKAWWNEKFIFEFPMSDWKLLTHIKF   73 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~~----~T~~~---~~~~~nP~wne~f~f~v~~~~~~~~~~L~v   73 (151)
                      ...+.|+|.++.+++........|-|+.+.+  +++..    .|+..   +.-...+.|||-+.|.+...+...+..|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3568899999999987654445778887754  44332    22211   111235779999999776655446789999


Q ss_pred             EEEECCCCC---------CCcccEEEEEeccccc
Q 047744           74 RIMDTELLT---------DGGFVGETVFSYIHDQ   98 (151)
Q Consensus        74 ~v~d~~~~~---------~d~~iG~~~~~~~~~~   98 (151)
                      ++|+....+         .+..||.+.+.++...
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~  120 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR  120 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence            999876443         3468999996666543

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.13  E-value=0.008  Score=41.50  Aligned_cols=93  Identities=15%  Similarity=0.135  Sum_probs=60.1

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCee----eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      ..++|.+....++...+ ....+-||.+.+  +++.    ..|... ..+.++.|||.+.|.+...+...+..|.|+||+
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~-~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~   85 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKV-PFSTSVTWNEWLTFDILISDLPREARLCLSIYA   85 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCC-cCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence            45778888887776521 223566777654  3332    122222 123689999999997665554467899999999


Q ss_pred             CCCCC--CCcccEEEEEeccccc
Q 047744           78 TELLT--DGGFVGETVFSYIHDQ   98 (151)
Q Consensus        78 ~~~~~--~d~~iG~~~~~~~~~~   98 (151)
                      ....+  .+..||.+.+.++...
T Consensus        86 ~~~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          86 VSEPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             EecCCCCcceEEEEEeEEeEccc
Confidence            76543  4578999996666544

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.13  E-value=0.033  Score=39.49  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=57.0

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCee---eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQE---HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..++|+|..+. .+..+......-||.+.+  +++.   .+|+.. .-+.++.|||-+.|.+...+......|.|+||+.
T Consensus        10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~-~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~   87 (178)
T cd08399          10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPK-PFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG   87 (178)
T ss_pred             CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeecc-CCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence            35788888876 333332223445666543  3322   234333 2356799999999987766655678999999986


Q ss_pred             CCCC----------------CCcccEEEEEeccccc
Q 047744           79 ELLT----------------DGGFVGETVFSYIHDQ   98 (151)
Q Consensus        79 ~~~~----------------~d~~iG~~~~~~~~~~   98 (151)
                      ..-.                .+-.||.+.++++.-.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~  123 (178)
T cd08399          88 KAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHR  123 (178)
T ss_pred             ecCcccccccccccccccccccceEEEEEEEEEcCC
Confidence            3211                1446788887776544

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.13  E-value=0.038  Score=37.32  Aligned_cols=119  Identities=14%  Similarity=0.226  Sum_probs=71.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee---eEEeeeeCCCCCCeeceEEEEEEeCC-----CccccceEEEEEE
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE---HRSKNSMVKGEKAWWNEKFIFEFPMS-----DWKLLTHIKFRIM   76 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~~~nP~wne~f~f~v~~~-----~~~~~~~L~v~v~   76 (151)
                      .+.|.+++..+++..    ....|+..+.+...   ..|......+..-.|+|.|.+.+...     .......+.|.|+
T Consensus         8 ~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~   83 (143)
T PF10358_consen    8 QFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF   83 (143)
T ss_pred             EEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence            466888888888762    23446666555443   34444444456688999998843221     1124567889998


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccC-CCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ-SNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      ....-++...+|.+.              ++|+++.... ......+.|..        .......|.+++.+.
T Consensus        84 ~~~~~~~k~~lG~~~--------------inLaey~~~~~~~~~~~~~l~~--------~~~~~a~L~isi~~~  135 (143)
T PF10358_consen   84 EVDGSGKKKVLGKVS--------------INLAEYANEDEEPITVRLLLKK--------CKKSNATLSISISLS  135 (143)
T ss_pred             EecCCCccceEEEEE--------------EEHHHhhCcCCCcEEEEEeCcc--------CCCCCcEEEEEEEEE
Confidence            875333336899999              9999998643 21012222211        124556777777664

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=97.02  E-value=0.015  Score=36.59  Aligned_cols=60  Identities=8%  Similarity=0.168  Sum_probs=44.6

Q ss_pred             CCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEE
Q 047744           23 GTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETV   91 (151)
Q Consensus        23 ~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~   91 (151)
                      |..+-.+++++++.....+.-+ ...+..|++.|.+++..     .+.|.|+||-+|-   ..+.|-.-
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR-----sRELEI~VywrD~---RslCav~~   66 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER-----SRELEIAVYWRDW---RSLCAVKF   66 (98)
T ss_pred             cccceEEEEEEcCeEEeecccc-ccccccccceeEEEeec-----ccEEEEEEEEecc---hhhhhhee
Confidence            3467888999988765544454 35789999999998875     5789999998763   34667666

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.77  E-value=0.021  Score=39.72  Aligned_cols=74  Identities=15%  Similarity=0.203  Sum_probs=51.8

Q ss_pred             CCCEEEEEEE--CCeee----EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEecccc
Q 047744           24 TPSYYVIARC--GNQEH----RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHD   97 (151)
Q Consensus        24 ~~dpyv~v~~--~~~~~----~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~   97 (151)
                      .++-||.+.+  +++..    .|+.. .-+..+.|||-..|.+...+...+..|.|+||+....+....+|.+.++++..
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~-~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYK-PFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEcccc-CCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            4778888755  33322    33222 22566889999999877766546789999999987655667899999777754


Q ss_pred             c
Q 047744           98 Q   98 (151)
Q Consensus        98 ~   98 (151)
                      .
T Consensus       108 ~  108 (159)
T cd08397         108 D  108 (159)
T ss_pred             C
Confidence            3

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.53  E-value=0.011  Score=48.26  Aligned_cols=62  Identities=16%  Similarity=0.401  Sum_probs=46.3

Q ss_pred             eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCC----CCCCcccEEEEEeccccccccceeeeecCcccc
Q 047744           38 HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTEL----LTDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT  113 (151)
Q Consensus        38 ~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~----~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~  113 (151)
                      .+|.++. +.+||.|-+.|..+....   ..+.|+++++|.+.    +...+|+|++.              ..++.+.+
T Consensus        43 ~rte~i~-~~~~p~f~~~~~l~y~fE---~vQ~l~~~~~~~~~~~~~l~~~dflg~~~--------------c~l~~ivs  104 (529)
T KOG1327|consen   43 GRTEVIR-NVLNPFFTKKFLLQYRFE---KVQLLRFEVYDIDSRTPDLSSADFLGTAE--------------CTLSQIVS  104 (529)
T ss_pred             cceeeee-ccCCccceeeechhheee---eeeeEEEEEeecCCccCCcchhcccceee--------------eehhhhhh
Confidence            3677776 589999999987766553   35789999998764    35678999999              77777765


Q ss_pred             cCCC
Q 047744          114 DQSN  117 (151)
Q Consensus       114 ~~~~  117 (151)
                      ....
T Consensus       105 ~~~~  108 (529)
T KOG1327|consen  105 SSGL  108 (529)
T ss_pred             hhhh
Confidence            4443

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.44  E-value=0.1  Score=40.74  Aligned_cols=122  Identities=13%  Similarity=0.172  Sum_probs=82.6

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCc----cccceEEEEEEECC-C
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDW----KLLTHIKFRIMDTE-L   80 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~----~~~~~L~v~v~d~~-~   80 (151)
                      +.|.|++|++.+...   ...-++..++++....|-.+. .+..|.||-.+.+++.....    ..+..|++++|..+ .
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~   77 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS   77 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence            568899999987652   234567788888888887553 58899999999997643210    13568999999887 4


Q ss_pred             CCCCcccEEEEEeccccccccceeeeecCcc-cccCCCcceeeeeeccccceecCC---CccceEEEEEEEEE
Q 047744           81 LTDGGFVGETVFSYIHDQTSVNQCRYYLGGI-ITDQSNDKELIEVKPAPYNVLLED---DTYKGQIVIGFKFI  149 (151)
Q Consensus        81 ~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~---~~~~G~i~~~~~~~  149 (151)
                      -+..+.||.+.              ++|... +....    .....+.||+++-.+   .+.+-||.+++...
T Consensus        78 ~~~re~iGyv~--------------LdLRsa~~~~~~----~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie  132 (340)
T PF12416_consen   78 TGKRESIGYVV--------------LDLRSAVVPQEK----NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIE  132 (340)
T ss_pred             CCcceeccEEE--------------EEcccccccccc----ccccCCCeeEccccccccccCCccEEEEEEEe
Confidence            45678999999              887776 11111    111356777766332   22457888887653

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.28  E-value=0.072  Score=36.15  Aligned_cols=58  Identities=16%  Similarity=0.256  Sum_probs=42.7

Q ss_pred             CCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC----cccEEEEEeccccccccceee
Q 047744           48 EKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG----GFVGETVFSYIHDQTSVNQCR  105 (151)
Q Consensus        48 ~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d----~~iG~~~~~~~~~~~~~~~~~  105 (151)
                      .++.|||.+.|.+...+...+..|.|+||+.+.....    ..||.+.+.++....-+.++.
T Consensus        32 ~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~L~~G~   93 (142)
T PF00792_consen   32 SRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQLRQGP   93 (142)
T ss_dssp             SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSBBEEEE
T ss_pred             ccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCcccCCC
Confidence            6999999999988776654678899999997765544    689999977776554444443

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=96.08  E-value=0.019  Score=44.05  Aligned_cols=79  Identities=18%  Similarity=0.225  Sum_probs=56.0

Q ss_pred             CcEEEEEEEEeeCCCCCCC--CCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744            3 GGILEVLLVNAEGIKHTNI--FGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE   79 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~   79 (151)
                      .|.|-+.+..+++|+-...  .-+.+-|+++..+.+- .+| .++..+.--.|.|.|..++..     ...+.+-||.|+
T Consensus        50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt-~vrs~~~~f~w~e~F~~Dvv~-----~~vl~~lvySW~  123 (442)
T KOG1452|consen   50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPART-RVRSSGPGFAWAEDFKHDVVN-----IEVLHYLVYSWP  123 (442)
T ss_pred             cceEEEEEecccccccChhccCceeeeeeeeeecccCcccc-ccccCCCCccchhhceeeccc-----ceeeeEEEeecC
Confidence            5889999999999965543  3357889999887663 344 343344556789999887764     357888888888


Q ss_pred             CCCCCccc
Q 047744           80 LLTDGGFV   87 (151)
Q Consensus        80 ~~~~d~~i   87 (151)
                      .-.++++.
T Consensus       124 pq~RHKLC  131 (442)
T KOG1452|consen  124 PQRRHKLC  131 (442)
T ss_pred             chhhcccc
Confidence            65566653

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=95.63  E-value=0.22  Score=31.76  Aligned_cols=73  Identities=18%  Similarity=0.176  Sum_probs=45.6

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCeee----EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744            6 LEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQEH----RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE   79 (151)
Q Consensus         6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~   79 (151)
                      +.+.+..+.+..........+-||.+.+  +++..    .|+. +.-+..+.|||-..|.+...+...+..|.|++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~-~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSY-KPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecc-cCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            4556666666654432222477888754  33322    2322 222455899999999776665446789999999864

Outlier of C2 family.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=94.05  E-value=0.31  Score=34.56  Aligned_cols=56  Identities=11%  Similarity=0.124  Sum_probs=32.5

Q ss_pred             EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC-CC--cccEEEEEeccc
Q 047744           39 RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT-DG--GFVGETVFSYIH   96 (151)
Q Consensus        39 ~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~-~d--~~iG~~~~~~~~   96 (151)
                      .|.+. ..+.+|.|+|+|.++++... ....+|.|++++...-. ++  ..+|.+.+.+..
T Consensus        62 ~S~v~-yh~k~P~f~deiKi~LP~~l-~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   62 YSSVY-YHNKNPQFNDEIKIQLPPDL-FPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             E-----TT-SS-EEEEEEEEEE-CCC-CTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEE-ecCCCCCccEEEEEEcCchh-cccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            34343 34689999999999998753 25678999999965322 12  689999944444

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=93.79  E-value=0.33  Score=34.74  Aligned_cols=57  Identities=16%  Similarity=0.312  Sum_probs=39.7

Q ss_pred             eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC-C-CcccEEEEEeccc
Q 047744           38 HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT-D-GGFVGETVFSYIH   96 (151)
Q Consensus        38 ~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~-~-d~~iG~~~~~~~~   96 (151)
                      .+|.+.. .+.+|.|+|++.+.++.... ...+|.|++++...-. . ...+|-+.+.++.
T Consensus        55 ~~S~V~y-H~~~P~W~EtiKi~lP~~~~-~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          55 YRSFVLY-HNNSPRWNETIKLPIPIDKF-RGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             EEEEEEE-cCCCCCCceeEEEecChhhC-CCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            4665554 57899999999998887542 5678999988754321 1 2568888855554

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=93.54  E-value=0.47  Score=33.47  Aligned_cols=56  Identities=9%  Similarity=0.154  Sum_probs=39.6

Q ss_pred             EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC-----CCCcccEEEEEeccc
Q 047744           39 RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL-----TDGGFVGETVFSYIH   96 (151)
Q Consensus        39 ~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~-----~~d~~iG~~~~~~~~   96 (151)
                      .++++.. ..+|.|+|++...++..- ....+|.|++++...-     .....+|-+.+.+..
T Consensus        55 ~~sv~~~-~k~p~f~deiKi~LP~~l-~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYY-HKNPVFNDEIKIQLPADL-TPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEc-CCCCCCceeEEEecCCcc-CCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            4445554 389999999999886642 2567899999986522     235679999955554

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=93.23  E-value=0.54  Score=33.85  Aligned_cols=58  Identities=17%  Similarity=0.281  Sum_probs=40.3

Q ss_pred             eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC----CCCcccEEEEEeccc
Q 047744           37 EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL----TDGGFVGETVFSYIH   96 (151)
Q Consensus        37 ~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~----~~d~~iG~~~~~~~~   96 (151)
                      ..+|.+.. ...+|.|+|++...++.... ...+|.|++++...-    .....+|-+.+.+++
T Consensus        54 e~~S~V~Y-h~~~P~W~EtIKl~lP~~~~-~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~  115 (196)
T cd08694          54 EYKSVIYY-QVDKPKWFETFKVAIPIEDF-KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQ  115 (196)
T ss_pred             eEEEEEEe-ecCCCCCceeEEEecChhhC-CCeEEEEEEEeeccccccCCCCCceEEEEEeeec
Confidence            35665544 47899999999998887542 577999999885421    112468888866663

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=92.76  E-value=0.77  Score=29.78  Aligned_cols=97  Identities=6%  Similarity=0.038  Sum_probs=47.8

Q ss_pred             EEEEEE-CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCc----cccceEEEEEEECCCCCCCcccEEEEEeccccccccc
Q 047744           28 YVIARC-GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDW----KLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVN  102 (151)
Q Consensus        28 yv~v~~-~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~----~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~  102 (151)
                      ||.+.+ +-+.+.|.++.  +.+|.+|-+-.|.|...+.    +....+.++++..- ....+.+|.++           
T Consensus         2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~-----------   67 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQ-----------   67 (107)
T ss_dssp             EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEE-----------
T ss_pred             EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEE-----------
Confidence            344433 23456676665  7999999998888876431    12568899998865 23356899999           


Q ss_pred             eeeeecCcccccCC-CcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744          103 QCRYYLGGIITDQS-NDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus       103 ~~~i~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                         +++..++.... ...+...+       ...++..-|.|.+.++.
T Consensus        68 ---i~l~~ll~~~~~~i~~~~~l-------~g~~~~~~g~l~y~~rl  104 (107)
T PF11618_consen   68 ---ISLRPLLESNGERIHGSATL-------VGVSGEDFGTLEYWIRL  104 (107)
T ss_dssp             ---E--SHHHH--S--EEEEEEE--------BSSS-TSEEEEEEEEE
T ss_pred             ---eechhhhcCCCceEEEEEEE-------eccCCCeEEEEEEEEEe
Confidence               99999884333 21222222       23456678999888765

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=90.82  E-value=3.3  Score=28.95  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=44.8

Q ss_pred             CCCEEEEEEECCeeeEEeeeeC--CCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEE
Q 047744           24 TPSYYVIARCGNQEHRSKNSMV--KGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETV   91 (151)
Q Consensus        24 ~~dpyv~v~~~~~~~~T~~~~~--~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~   91 (151)
                      +..-|+++.+.++...++..+.  ....=.++|.|.+.+..    -.+.|.++||.... ..+..|+++.
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~----~Pesi~l~i~E~~~-~~~~~la~v~  100 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR----WPESIKLEIYEKSG-LSDRLLAEVF  100 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec----CCCEEEEEEEEccC-ccceEEEEEE
Confidence            3567899989887654433331  12234467888887766    34789999999886 6778999999

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=89.57  E-value=2.5  Score=30.04  Aligned_cols=58  Identities=9%  Similarity=0.106  Sum_probs=39.7

Q ss_pred             eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC------CCcccEEEEEecccc
Q 047744           38 HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT------DGGFVGETVFSYIHD   97 (151)
Q Consensus        38 ~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~------~d~~iG~~~~~~~~~   97 (151)
                      ..|.+.. .+.+|.|+|++...++..- -...+|.|+.++..--.      ....+|-+.+.+.+.
T Consensus        56 ~~S~V~y-Hnk~P~f~DEiKi~LP~~l-~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~  119 (179)
T cd08696          56 AYTAVTY-HNKSPDFYDEIKIKLPADL-TDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRN  119 (179)
T ss_pred             EEEEEEE-eCCCCcccceEEEEcCCCC-CCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecC
Confidence            4565554 4789999999998887643 25678999999854211      124589888555543

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=88.53  E-value=3.8  Score=29.26  Aligned_cols=57  Identities=11%  Similarity=0.083  Sum_probs=38.6

Q ss_pred             eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC--C-------CCcccEEEEEecc
Q 047744           37 EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL--T-------DGGFVGETVFSYI   95 (151)
Q Consensus        37 ~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~--~-------~d~~iG~~~~~~~   95 (151)
                      ...|.+.. .+.+|.|.|++...++..- ....+|.|+.++..--  .       ....+|-+.+.+.
T Consensus        57 ~~~s~V~y-h~k~P~f~dEiKI~LP~~l-~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl  122 (185)
T cd08697          57 SAYAAVLH-HNQNPEFYDEIKIELPTQL-HEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL  122 (185)
T ss_pred             EEEEEEEE-cCCCCccceeEEEecCCcC-CCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence            34565655 4799999999988887643 2567899999986511  1       1245888884444

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=84.81  E-value=3  Score=36.47  Aligned_cols=73  Identities=12%  Similarity=0.074  Sum_probs=50.2

Q ss_pred             CCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccccccce
Q 047744           25 PSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQ  103 (151)
Q Consensus        25 ~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~  103 (151)
                      .++|+.+.+.... .+|....+--.+|.|.+.|......    ....+.+.+-+.+..+.-..+|.+.            
T Consensus       138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h----~~g~v~~~~~~~~~~G~s~~w~~v~------------  201 (887)
T KOG1329|consen  138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAH----KAGYVIFRVKGARVPGWSKRWGRVK------------  201 (887)
T ss_pred             ccchheeeechhhhhchhhhhcccccchhhhhccccccc----cccEEEEeecCCccccceeEEEEec------------
Confidence            4788887765443 3454444323789999888655554    3467888888888777667899999            


Q ss_pred             eeeecCcccccC
Q 047744          104 CRYYLGGIITDQ  115 (151)
Q Consensus       104 ~~i~l~~~~~~~  115 (151)
                        ++.-.+++..
T Consensus       202 --~s~~~~~~~~  211 (887)
T KOG1329|consen  202 --ISFLQYCSGH  211 (887)
T ss_pred             --cchhhhhccc
Confidence              7777776543

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=83.31  E-value=0.25  Score=41.64  Aligned_cols=62  Identities=8%  Similarity=-0.085  Sum_probs=41.7

Q ss_pred             CCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEE
Q 047744           24 TPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGET   90 (151)
Q Consensus        24 ~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~   90 (151)
                      ..+||+.+.+..........+..+..|.|+++|..++..     ...+.+.|++......+.+...+
T Consensus        27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-----~~~~~i~v~~~~~~~~~~~~a~~   88 (694)
T KOG0694|consen   27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-----GGAKNIIVLLKSPDPKALSEAQL   88 (694)
T ss_pred             hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-----CCceEEEEEecCCcchhhHHHhH
Confidence            468998887765443223335578999999999998765     35788889887644444333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-07

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS 63
           G LEV+LV+A+G++  +       YV   C  Q+ +S  +   G    WNE FIF     
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 64  DWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIE 123
                T +K +I D ++ T+   VGE                  L  +  + S       
Sbjct: 70  ----TTELKAKIFDKDVGTEDDAVGEATIP--------------LEPVFVEGS------- 104
Query: 124 VKPAPYNVLLEDDTYKGQIVIGFKF 148
           + P  YNV ++D+ YKG+I +   F
Sbjct: 105 IPPTAYNV-VKDEEYKGEIWVALSF 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	5e-21
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-07
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-06
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-05
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	6e-05
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-04
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-04
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	4e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 82.0 bits (203), Expect = 5e-21
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 26/145 (17%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS 63
           G LEV+LV+A+G++  +       YV   C  Q+ +S  +   G    WNE FIF     
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 64  DWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIE 123
                T +K +I D ++ T+   VGE                  L  +  +         
Sbjct: 70  T----TELKAKIFDKDVGTEDDAVGEATIP--------------LEPVFVEG-------S 104

Query: 124 VKPAPYNVLLEDDTYKGQIVIGFKF 148
           + P  YN +++D+ YKG+I +   F
Sbjct: 105 IPPTAYN-VVKDEEYKGEIWVALSF 128

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKA-WWNEKFIFEFPM 62
             L++ +++A+  ++   +  PS YV      Q  +++        +  W +        
Sbjct: 36  SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE--KCNNTNSPKWKQPLTVIVTP 93

Query: 63  SDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
                   + FR+   + L     +G     
Sbjct: 94  VS-----KLHFRVWSHQTLKSDVLLGTAALD 119

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 3  GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAW---WNEKFIFE 59
           G+L V++ +A  I  T  FG P   V     +++ ++K      +      WNE   F+
Sbjct: 6  SGMLRVIVESASNIPKT-KFGKPDPIVSVIFKDEKKKTK---KV-DNELNPVWNEILEFD 60

Query: 60 FPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
                   + +   + D E +     +G    +
Sbjct: 61 LRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVA 94

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 16/101 (15%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSY-----------YVIARCGNQEHRSKNSMVKGEKAWW 52
           G+L++ +  A  +K T      +            Y+     +       +  K     W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 53  NEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
           +++  F   + + +    I+  +     +    FV      
Sbjct: 66  HDE--FVTDVCNGR---KIELAVFHDAPIGYDDFVANCTIQ 101

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 15/100 (15%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSY----------YVIARCGNQEHRSKNSMVKGEKAWWN 53
           G L V +  A G++ T      S           Y+            ++  K  K  +N
Sbjct: 29  GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88

Query: 54  EKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
           E+F             H++  +     L    FV      
Sbjct: 89  EEFCANVTDG-----GHLELAVFHETPLGYDHFVANCTLQ 123

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 3  GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPM 62
          GG++ +L V  +  K        + YV  +  N   +S    V+G +  W + F+FE   
Sbjct: 1  GGVMSLLCVGVKKAKFDGAQEKFNTYVTLKVQN--VKSTTIAVRGSQPSWEQDFMFEINR 58

Query: 63 SDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
           D      +   + +  L+ D   VG     
Sbjct: 59 LD----LGLTVEVWNKGLIWD-TMVGTVWIP 84

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 14/100 (14%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAW---WNEKFIFEF 60
             + + +V A+G++  +  G+   YV  + G  + R+K             W E F FE 
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTK---TI-YGNLNPVWEENFHFEC 72

Query: 61  PMSDWKLL-------THIKFRIMDTELLTDGGFVGETVFS 93
             S  ++          IK R+          F+G+T+  
Sbjct: 73  HNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIE 112

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 1  MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
              +L V +  A+       F T   YV  +  N    S    V+G +  W + F+FE 
Sbjct: 11 GILSLLCVGVKKAKFDGAQEKFNT---YVTLKVQN--VESTTIAVRGSQPSWEQDFMFEI 65

Query: 61 PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
             D      +   + +  L+ D   VG     
Sbjct: 66 NRLD----LGLTVEVWNKGLIWD-TMVGTVWIP 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.95
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.95
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.94
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.94
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.94
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.94
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.94
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.92
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.92
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.91
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.91
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.91
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.9
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.9
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.89
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.88
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.88
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.88
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.88
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.88
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.88
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.88
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.87
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.87
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.87
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.87
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.86
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.86
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.86
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.86
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.86
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.86
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.86
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.85
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.85
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.85
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.84
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.84
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.83
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.82
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.78
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.77
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.75
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.71
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.65
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.64
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.54
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.54
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.53
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.37
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.32
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	95.76
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	95.26
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	93.71
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	92.91
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	92.62
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	91.98

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.95  E-value=3.1e-27  Score=159.07  Aligned_cols=124  Identities=30%  Similarity=0.480  Sum_probs=105.8

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      +.|.|.|+|++|++|+..+..+.+||||++.+.+++.+|++++.++.||.|||+|.|.+..    ....|.|+|||++.+
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~----~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE----GTTELKAKIFDKDVG   83 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES----SCCEEEEEECCSSSC
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC----CCCEEEEEEEECCCC
Confidence            5789999999999999999889999999999998888998876469999999999999986    357899999999999


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEeC
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN  151 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~~  151 (151)
                      ++|++||++.              +++.++...+.....|+.|.        ..++..|+|.++++|.|.
T Consensus        84 ~~d~~lG~~~--------------i~l~~l~~~~~~~~~w~~L~--------~~~~~~G~i~l~l~~~p~  131 (136)
T 1wfj_A           84 TEDDAVGEAT--------------IPLEPVFVEGSIPPTAYNVV--------KDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTTCCSEEEE--------------EESHHHHHHSEEEEEEEEEE--------ETTEEEEEEEEEEEEEEC
T ss_pred             CCCceEEEEE--------------EEHHHhccCCCCCcEEEEee--------cCCccCEEEEEEEEEEeC
Confidence            9999999999              99998864443213455553        356788999999999884

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.95  E-value=6.7e-27  Score=157.04  Aligned_cols=123  Identities=20%  Similarity=0.332  Sum_probs=105.2

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      ..|.|.|+|++|++|+..+..+.+||||++.+.+++.+|++++ ++.||.|||+|.|.+..    ....|.|+|||++.+
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~----~~~~l~i~V~d~d~~   85 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKD----IHDVLEVTVFDEDGD   85 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCS-SCSSCCCCEEEEEEESC----TTCEEEEEEEEEETT
T ss_pred             CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeec-CCCCCccccEEEEEecC----CCCEEEEEEEECCCC
Confidence            5789999999999999999889999999999999999998876 58999999999999975    347899999999999


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEeC
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN  151 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~~  151 (151)
                      ++|++||++.              +++.++....   ..|+.|.+..     .++..+|+|.++++|+.|
T Consensus        86 ~~~~~lG~~~--------------i~l~~l~~~~---~~w~~L~~~~-----~~~~~~G~i~l~i~~~~N  133 (133)
T 2ep6_A           86 KPPDFLGKVA--------------IPLLSIRDGQ---PNCYVLKNKD-----LEQAFKGVIYLEMDLIYN  133 (133)
T ss_dssp             EEEEECCBCE--------------EEGGGCCSSC---CEECCCBCSC-----TTSCCSSEEEEEEEEEEC
T ss_pred             CCCCeeEEEE--------------EEHHHccCCC---ceEEEeecCC-----CCCccceEEEEEEEEEeC
Confidence            8999999999              9998885322   3566665432     134678999999999998

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.94  E-value=5.2e-26  Score=153.77  Aligned_cols=128  Identities=19%  Similarity=0.262  Sum_probs=105.2

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      ..|.|.|+|++|++|+..+. +.+||||++.+.+++++|++++ ++.||+|||+|.|.+..........|.|+|||++.+
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~   82 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVD-NELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI   82 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCC-SCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeec-CCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence            36899999999999999998 9999999999999989998876 689999999999998754322457899999999999


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecC-CCccceEEEEEEEEEe
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLE-DDTYKGQIVIGFKFIV  150 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~G~i~~~~~~~~  150 (151)
                      ++|++||++.              +++.++...... ..|+.+.+.    ... ....+|+|.++++|.|
T Consensus        83 ~~~~~lG~~~--------------i~l~~l~~~~~~-~~w~~l~~l----~~~~~~~~~G~l~l~~~~~p  133 (140)
T 2dmh_A           83 GQNKLIGTAT--------------VALKDLTGDQSR-SLPYKLISL----LNEKGQDTGATIDLVIGYDP  133 (140)
T ss_dssp             SSCCCCEEEE--------------EEGGGTCSSSCE-EEEEEEEEE----ECTTCCEEEEEEEEEEEECC
T ss_pred             CCCceEEEEE--------------EEHHHhccCCCc-eeEEeeeec----cCCCCCCCCCEEEEEEEEEC
Confidence            9999999999              999998765554 667663322    112 2346799999999976

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.94  E-value=1.6e-26  Score=155.25  Aligned_cols=122  Identities=19%  Similarity=0.180  Sum_probs=94.4

Q ss_pred             CCCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCC
Q 047744            1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTEL   80 (151)
Q Consensus         1 m~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~   80 (151)
                      |+.+.|.|+|++|+++..   .+.+||||+++  .+..+|++++.++.||.|||+|.|.+...    ...|.|+|||++ 
T Consensus         2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~----~~~L~~~V~D~d-   71 (131)
T 2cjt_A            2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL----DLGLTVEVWNKG-   71 (131)
T ss_dssp             CCCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC----SSEEEEEEEECC-
T ss_pred             CcceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC----CCeEEEEEEECC-
Confidence            889999999999998853   56899999998  34456666654689999999999999863    457999999999 


Q ss_pred             CCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceE-------EEEEEEE
Q 047744           81 LTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQ-------IVIGFKF  148 (151)
Q Consensus        81 ~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~-------i~~~~~~  148 (151)
                      +++|++||++.              ++|+++...+ . .+|..+.|.+|++..++++++|+       +.+.++|
T Consensus        72 ~~~dd~iG~~~--------------i~l~~l~~~~-~-~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           72 LIWDTMVGTVW--------------IPLRTIRQSN-E-EGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             SSCEEEEEEEE--------------EEGGGSCBCS-S-CCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             CCCCCeEEEEE--------------EEHHHhhhcC-C-CCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence            88999999999              9999987655 3 67888899999988788888888       8888887

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.94  E-value=1.2e-25  Score=157.76  Aligned_cols=125  Identities=19%  Similarity=0.330  Sum_probs=96.7

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC------eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN------QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      ..|.|.|+|++|++|+..+..+.+||||++.+..      +.++|++++ ++.||.|||+|.|.+..    ....|.|+|
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~----~~~~L~~~V   80 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEEILFRVLP----QRHRILFEV   80 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCS-SCSSCEEEEEEEEEECT----TTCEEEEEE
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceEC-CCCCCcccceEEEEEcC----CCCEEEEEE
Confidence            4689999999999999999999999999999864      557887776 69999999999999986    347899999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcc-----eeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDK-----ELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      ||++.+++|++||++.              ++|.++.......+     .|+.|.++.     ..++.+|+|.++++|+|
T Consensus        81 ~d~d~~~~d~~lG~~~--------------i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~l~~~p  141 (176)
T 3m7f_B           81 FDENRLTRDDFLGQVD--------------VPLYPLPTENPRMERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP  141 (176)
T ss_dssp             EECC----CEEEEEEE--------------EESCSCCBC------CCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred             EECCCCCCCcEEEEEE--------------EEHHHccccCCcccccccccEEEccccC-----CCCccCEEEEEEEEEEe
Confidence            9999999999999999              99999976543211     577766543     24567899999999987

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.94  E-value=1.6e-25  Score=153.50  Aligned_cols=125  Identities=19%  Similarity=0.335  Sum_probs=96.9

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC------eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN------QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      ..+.|+|+|++|++|+..+..+.+||||++.+..      ...+|++++ ++.||.|||+|.|.+..    ....|.|+|
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~----~~~~l~~~V   92 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSLNPKWNEEILFRVHP----QQHRLLFEV   92 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCS-SCSSCCCCEEEEEEECT----TTCEEEEEE
T ss_pred             CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCcccc-CCCCCCCCCEEEEEecC----CCCEEEEEE
Confidence            3579999999999999999889999999999863      456787775 58999999999999876    347899999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCC-----cceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-----DKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      ||++.+++|++||++.              +++.++......     ...|+.|.+..     ..++..|+|.++++|+|
T Consensus        93 ~d~d~~~~d~~iG~~~--------------i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           93 FDENRLTRDDFLGQVD--------------VPLYPLPTENPRLERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             EECCSSSCCEEEEEEE--------------EECCSCCBCCTTSCCCCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred             EECCCCcCCCeeEEEE--------------EEHHHcccCCCccccccccccccccccc-----CCCCcceEEEEEEEEeC
Confidence            9999999999999999              999988754432     13677776543     23467899999999987

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.94  E-value=4.1e-25  Score=150.71  Aligned_cols=122  Identities=20%  Similarity=0.334  Sum_probs=103.3

Q ss_pred             CCCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCC
Q 047744            1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTEL   80 (151)
Q Consensus         1 m~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~   80 (151)
                      +..|.|.|+|++|++|+..+..+.+||||++.++++..+|++++ ++.||.|||+|.|.+...    ...|.|+|||++.
T Consensus        14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~----~~~l~~~v~d~d~   88 (148)
T 3kwu_A           14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLNPVWEENFHFECHNS----SDRIKVRVLDEDD   88 (148)
T ss_dssp             -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCC-SCSSCEEEEEEEEEECST----TCEEEEEEEECCC
T ss_pred             ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccC-CCCCCCcccEEEEEecCC----CCEEEEEEEECCC
Confidence            35789999999999999999899999999999999999998876 689999999999999763    4789999999998


Q ss_pred             C-----------CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           81 L-----------TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        81 ~-----------~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      +           ++|++||++.              +++.++.  ... ..|+.|.+..     ..+..+|+|.++++|.
T Consensus        89 ~~~~~~~~~~~~~~~~~lG~~~--------------i~l~~l~--~~~-~~w~~L~~~~-----~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           89 DIKSRVKQRFKRESDDFLGQTI--------------IEVRTLS--GEM-DVWYNLDKRT-----DKSAVSGAIRLHISVE  146 (148)
T ss_dssp             SHHHHHHTTTSSCSSEEEEEEE--------------EEGGGCC--SEE-EEEEECBCSS-----TTCCCCCEEEEEEEEE
T ss_pred             CccccccccccCCCCccEEEEE--------------EEHHHCc--CCC-CEEEEcccCC-----CCCCCceEEEEEEEEE
Confidence            6           7899999999              9998883  222 5788777543     2345779999999985

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.92  E-value=8.1e-25  Score=147.49  Aligned_cols=118  Identities=13%  Similarity=0.241  Sum_probs=95.0

Q ss_pred             CCCcEEEEEEEEeeCCCCCCCCCC-----------CCEEEEEEECCeee-EEeeeeCCCCCCeeceEEEEEEeCCCcccc
Q 047744            1 MKGGILEVLLVNAEGIKHTNIFGT-----------PSYYVIARCGNQEH-RSKNSMVKGEKAWWNEKFIFEFPMSDWKLL   68 (151)
Q Consensus         1 m~~g~L~V~v~~a~~L~~~~~~~~-----------~dpyv~v~~~~~~~-~T~~~~~~~~nP~wne~f~f~v~~~~~~~~   68 (151)
                      |..|.|+|+|++|++|+..+..++           +||||++.++++.. +|++. .++.||+|||+|.|.+..     .
T Consensus         3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~-~~t~nP~WnE~f~f~v~~-----~   76 (136)
T 1gmi_A            3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATK-QKTNSPAWHDEFVTDVCN-----G   76 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCC-SSCSSCEEEEEEEEEEEE-----E
T ss_pred             ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEE-CCCcCCccCCEEEEEecC-----C
Confidence            347899999999999998875444           99999999987764 55544 579999999999999875     2


Q ss_pred             ceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCC-cceeeeeeccccceecCCCccceEEEEEEE
Q 047744           69 THIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-DKELIEVKPAPYNVLLEDDTYKGQIVIGFK  147 (151)
Q Consensus        69 ~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~  147 (151)
                      ..|.|+|||++.+++|++||++.              +++.++...+.. ...|+.|.            .+|+|.+.++
T Consensus        77 ~~L~~~V~d~d~~~~dd~iG~~~--------------i~l~~l~~~~~~~~~~w~~L~------------~~G~i~l~l~  130 (136)
T 1gmi_A           77 RKIELAVFHDAPIGYDDFVANCT--------------IQFEELLQNGSRHFEDWIDLE------------PEGKVYVIID  130 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEE--------------EEHHHHTSTTCSEEEEEEECB------------SSCEEEEEEE
T ss_pred             CEEEEEEEeCCCCCCCCEEEEEE--------------EEHHHhcccCCCCccEEEEcC------------CCeEEEEEEE
Confidence            78999999999999999999999              999988764322 13455442            3799999999


Q ss_pred             EEe
Q 047744          148 FIV  150 (151)
Q Consensus       148 ~~~  150 (151)
                      |.+
T Consensus       131 ~~~  133 (136)
T 1gmi_A          131 LSG  133 (136)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            965

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.92  E-value=5.8e-25  Score=151.70  Aligned_cols=115  Identities=16%  Similarity=0.270  Sum_probs=94.5

Q ss_pred             CCcEEEEEEEEeeCCCCCCC----------CCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccce
Q 047744            2 KGGILEVLLVNAEGIKHTNI----------FGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTH   70 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~----------~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~   70 (151)
                      ..|.|+|+|++|++|+..|.          .+.+||||++.++++. .+|++. .++.||+|||+|.|.+..     ...
T Consensus        27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~-~ktlnP~WNE~F~f~v~~-----~~~  100 (157)
T 2fk9_A           27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTK-QKTNKPTYNEEFCANVTD-----GGH  100 (157)
T ss_dssp             EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCC-SSCSSCEEEEEEEEEEEE-----ECE
T ss_pred             CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeec-CCCCCCccCcEEEEEcCC-----CCE
Confidence            46899999999999998873          2569999999998876 477665 479999999999999864     368


Q ss_pred             EEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccccc----CCCcceeeeeeccccceecCCCccceEEEEEE
Q 047744           71 IKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD----QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGF  146 (151)
Q Consensus        71 L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~  146 (151)
                      |.|+|||++.+++|++||.+.              +++.++...    ... +.|+.|.|            .|+|.+.+
T Consensus       101 L~~~V~D~d~~~~dd~iG~~~--------------i~l~~l~~~~~~~~~~-~~W~~L~~------------~G~i~l~l  153 (157)
T 2fk9_A          101 LELAVFHETPLGYDHFVANCT--------------LQFQELLRTTGASDTF-EGWVDLEP------------EGKVFVVI  153 (157)
T ss_dssp             EEEEEEECCSSSSCEEEEEEE--------------EEHHHHHHHHTTCSEE-EEEEECBS------------SCEEEEEE
T ss_pred             EEEEEEECCCCCCCCEEEEEE--------------EEHHHhhcccCCCCcc-cEEEECCC------------CcEEEEEE
Confidence            999999999999999999999              999998754    222 56666532            69999998


Q ss_pred             EEE
Q 047744          147 KFI  149 (151)
Q Consensus       147 ~~~  149 (151)
                      +|.
T Consensus       154 ~~~  156 (157)
T 2fk9_A          154 TLT  156 (157)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            873

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.91  E-value=2.7e-23  Score=145.62  Aligned_cols=124  Identities=12%  Similarity=0.206  Sum_probs=97.3

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.++++..+|++++ ++.||+|||+|.|.+..     ...|.|+|||++.+
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~-~tlnP~Wne~f~f~v~~-----~~~L~~~V~D~d~~  107 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTP-----VSKLHFRVWSHQTL  107 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCS-SCSSCEEEEEEEEEECT-----TCEEEEEEEECCSS
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccC-CCCCCeECCEEEEEeCC-----CCEEEEEEEECCCC
Confidence            3578999999999999444455699999999999888998876 69999999999998853     47899999999999


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccccCCCc----ceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSND----KELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      ++|++||++.              +++.++.......    ..|+.|....     ...+..|+|.+.+.|++
T Consensus       108 ~~dd~lG~~~--------------i~l~~l~~~~~~~~~~~~~~~~L~~~~-----~~~~~~G~L~v~l~~l~  161 (173)
T 2nq3_A          108 KSDVLLGTAA--------------LDIYETLKSNNMKLEEVVVTLQLGGDK-----EPTETIGDLSICLDGLQ  161 (173)
T ss_dssp             SCCEEEEEEE--------------EEHHHHHHHTTTEESSEEEEEEEEESS-----CTTSEEEEEEEEEESEE
T ss_pred             CCCceEEEEE--------------EEHHHhcccCCCCcceeEEEEECccCC-----CCCcccEEEEEEEeeee
Confidence            9999999999              8888886432210    2355554331     13457899999999874

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.91  E-value=4e-23  Score=138.36  Aligned_cols=124  Identities=14%  Similarity=0.246  Sum_probs=96.8

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC--eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN--QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE   79 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~   79 (151)
                      ....|+|+|++|++|+..+..+.+||||++.+..  +..+|++++ ++.||.|||+|.|.+...     ..|.|+|||++
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~-----~~l~~~v~d~d   76 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVK-NTLDPKWNQHYDLYVGKT-----DSITISVWNHK   76 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCS-SCSSCEEEEEEEEEEETT-----CCEEEEEEEGG
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccC-CCCCCCccCEEEEEeCCC-----CEEEEEEEECC
Confidence            3568999999999999999999999999999974  677888775 699999999999998763     35999999999


Q ss_pred             CCCC---CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           80 LLTD---GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        80 ~~~~---d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      .+++   |++||++.              +++.++.........++.|......   ...+..|+|.+++++
T Consensus        77 ~~~~~~~d~~lG~~~--------------i~l~~l~~~~~~~~~~~~L~~~~~~---~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           77 KIHKKQGAGFLGCVR--------------LLSNAISRLKDTGYQRLDLCKLNPS---DTDAVRGQIVVSLQT  131 (132)
T ss_dssp             GTTSSTTTTEEEEEE--------------ECHHHHHHHTTSCCEEEECBCSSTT---CCCCCCSEEEEEEEE
T ss_pred             CCCCCCCCCceEEEE--------------EeHHHhhcccccCcEEEeeeecCCC---CCCceeEEEEEEEEc
Confidence            8876   89999999              9888874332221345555443211   123568999999875

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.91  E-value=1.4e-23  Score=146.26  Aligned_cols=120  Identities=20%  Similarity=0.205  Sum_probs=96.6

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      .+.|.|+|++|+++.   ..+.+||||+++  .+..+|++++.++.||+|||+|.|.+..    ....|.|+|||++ ++
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~----~~~~L~~~V~D~d-~~   82 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINR----LDLGLTVEVWNKG-LI   82 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCC----TTSEEEEEEEECC-SS
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeC----CCCEEEEEEEECC-CC
Confidence            579999999999884   257899999998  3445666665468999999999999886    3467999999999 88


Q ss_pred             CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceE-------EEEEEEE
Q 047744           83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQ-------IVIGFKF  148 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~-------i~~~~~~  148 (151)
                      +|++||++.              ++|.++.... . .+|..+.|.+|++..++++.+|+       +.+.++|
T Consensus        83 ~dd~iG~~~--------------i~L~~l~~~~-~-~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~  139 (167)
T 2cjs_A           83 WDTMVGTVW--------------IPLRTIRQSN-E-EGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  139 (167)
T ss_dssp             CCEEEEEEE--------------EEGGGSCBCS-S-CCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE
T ss_pred             CCceEEEEE--------------EEHHHhcccC-c-CCcccceeeeeeeEcCCCCCCceEccccceEEEEEEe
Confidence            999999999              9999987554 2 56777788888877677777776       5566665

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.90  E-value=4.2e-23  Score=137.00  Aligned_cols=118  Identities=13%  Similarity=0.247  Sum_probs=95.3

Q ss_pred             CcEEEEEEEEeeCCCC---CCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKH---TNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~---~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      .|.|.|+|++|++|+.   .+..+.+||||++.+.+   +.++|++.+ ++.||+|||+|.|.+...   ....|.|+||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~---~~~~l~i~V~   77 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFEFILDPN---QENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCT-TCSSCEEEEEEEEEECTT---SCCEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccC-CCCCCcccceEEEEecCC---CCCEEEEEEE
Confidence            5899999999999998   46668899999999975   667887776 689999999999998653   3578999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      |++.++ |++||++.              +++.++...... ..|+.|.+          ...|+|.+++...|
T Consensus        78 d~d~~~-~~~iG~~~--------------i~l~~l~~~~~~-~~~~~L~~----------~~~g~i~~~le~~~  125 (126)
T 1rlw_A           78 DANYVM-DETLGTAT--------------FTVSSMKVGEKK-EVPFIFNQ----------VTEMVLEMSLEVAS  125 (126)
T ss_dssp             ECCSSC-CEEEEEEE--------------EEGGGSCTTCEE-EEEEEETT----------TEEEEEEEEEECCC
T ss_pred             ECCCCC-CceeEEEE--------------EEHHHccCCCcE-EEEEEcCC----------CceEEEEEEEEeCC
Confidence            999874 89999999              999998654443 56666642          34688888877654

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.90  E-value=4.5e-23  Score=138.72  Aligned_cols=108  Identities=15%  Similarity=0.255  Sum_probs=88.2

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE-----CCeeeEEeeeeCCCCCCeeceEEEEE-EeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARC-----GNQEHRSKNSMVKGEKAWWNEKFIFE-FPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~~~~nP~wne~f~f~-v~~~~~~~~~~L~v~v~   76 (151)
                      .+.|.|+|++|++|+. +..+.+||||++.+     ...+.+|++++ ++.||+|||+|.|. ++..+ +....|.|+||
T Consensus        19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~~v~~~~-l~~~~L~~~V~   95 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISR-KTRNPTFNEMLVYSGYSKET-LRQRELQLSVL   95 (134)
T ss_dssp             TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCC-SCSSCEEEEEEEEESCCHHH-HTTCEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCc-CCCCCCCccEEEECCcCHHH-hCcCEEEEEEE
Confidence            5789999999999997 77788999999998     34567888776 69999999999998 66421 13468999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccc
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAP  128 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~  128 (151)
                      |++.++++++||++.              +++.++...... ..|+.|.+..
T Consensus        96 d~d~~~~~~~lG~~~--------------i~l~~l~~~~~~-~~W~~L~~~~  132 (134)
T 2b3r_A           96 SAESLRENFFLGGIT--------------LPLKDFNLSKET-VKWYQLTAAT  132 (134)
T ss_dssp             ECCSSSCCEEEEEEE--------------EEGGGSCTTSCE-EEEEECBC--
T ss_pred             ECCCCCCCcEEEEEE--------------EEhhhccCCCCc-ceeEECCCcc
Confidence            999999999999999              999988765554 6788887654

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.89  E-value=4e-23  Score=142.31  Aligned_cols=109  Identities=8%  Similarity=0.071  Sum_probs=89.3

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC---e---eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN---Q---EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~---~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      ..+.|.|.|++|++|+..+..+.+||||++.+..   .   +++|++++ ++.||+|||+|.|.++..+ +....|.|+|
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~-~tlnP~wnE~F~f~v~~~~-l~~~~L~~~V  118 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDTLVFNEVFWVSMSYPA-LHQKTLRVDV  118 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEE-CCSSEEEEEEEEEECCHHH-HHHCEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCC-CCCCCccccEEEEEcCHHH-hCcCEEEEEE
Confidence            3578999999999999999999999999999864   2   57888876 6999999999999986532 1357899999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP  126 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~  126 (151)
                      ||++.++++++||++.              +++.++...+.....|+.|.|
T Consensus       119 ~d~d~~~~~d~iG~~~--------------i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          119 CTTDRSHLEECLGGAQ--------------ISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             EEECTTSCEEEEEEEE--------------EECTTSCTTCCCEEEEEEEBC
T ss_pred             EECCCCCCCcEEEEEE--------------EEHHHccCCCCccccceEccC
Confidence            9999999999999999              999998532222257777653

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.88  E-value=8.7e-23  Score=138.39  Aligned_cols=108  Identities=18%  Similarity=0.231  Sum_probs=90.5

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE---CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARC---GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+   ..+..+|++++ ++.||.|||+|.|.+...+ +....|.|+|||+
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d~  109 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSE-LGGKTLVMAVYDF  109 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCC-SCSSCEEEEEEEECCCHHH-HTTCEEEEEEEEC
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCc-CCCCCcCcCeEEEeecHhh-cCCCEEEEEEEeC
Confidence            46889999999999999998889999999998   44567887775 6899999999999876522 1347899999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP  126 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~  126 (151)
                      +.+++|++||++.              ++|.++...... ..|+.|+|
T Consensus       110 d~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~W~~L~~  142 (143)
T 3f04_A          110 DRFSKHDIIGEFK--------------VPMNTVDFGHVT-EEWRDLQS  142 (143)
T ss_dssp             CSSSCCEEEEEEE--------------EEGGGCCTTSCE-EEEEECBC
T ss_pred             CCCCCCceEEEEE--------------EEHHHccCCCCc-ceEEECcC
Confidence            9999999999999              999988765554 67888765

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=1.3e-22  Score=137.34  Aligned_cols=110  Identities=19%  Similarity=0.255  Sum_probs=90.2

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.   .+..+|++++ ++.||+|||+|.|.+...+.+....|.|+|||+
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCT-TCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEc-CCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            467899999999999999988999999999984   3567787765 699999999999975322111347899999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      +.+++|++||++.              +++.++...... ..|+.|.+.
T Consensus       103 d~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~W~~L~~~  136 (141)
T 2d8k_A          103 DRFSRNDPIGEVS--------------IPLNKVDLTQMQ-TFWKDLKPS  136 (141)
T ss_dssp             CSSSSCEEEEEEE--------------EETTTSCTTSCE-EEEECCEEC
T ss_pred             CCCCCCcEEEEEE--------------EEhhhhcCCCCc-cEEEECcCC
Confidence            9999999999999              999998765544 678877755

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.88  E-value=2.3e-22  Score=133.97  Aligned_cols=107  Identities=18%  Similarity=0.232  Sum_probs=82.9

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE-----CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARC-----GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+     .....+|++++ ++.||+|||+|.|.+...+.+....|.|+||
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEPKWNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCS-SBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceeccccc-CCCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence            35789999999999999998899999999998     34567887775 6999999999999853222224578999999


Q ss_pred             ECCCCCC--CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744           77 DTELLTD--GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK  125 (151)
Q Consensus        77 d~~~~~~--d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~  125 (151)
                      |++.+++  +++||++.              +++.++..++ . ..|+.|+
T Consensus        95 d~d~~~~~~~~~lG~~~--------------i~l~~l~~~~-~-~~W~~Lq  129 (129)
T 2bwq_A           95 DQARVREEESEFLGEIL--------------IELETALLDD-E-PHWYKLQ  129 (129)
T ss_dssp             EC-------CEEEEEEE--------------EEGGGCCCSS-C-EEEEECC
T ss_pred             ECCcCcCcCCceeEEEE--------------EEccccCCCc-C-CccEECc
Confidence            9999887  99999999              9998887644 3 6777653

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.88  E-value=1.3e-21  Score=146.10  Aligned_cols=128  Identities=18%  Similarity=0.260  Sum_probs=103.7

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+..   +..+|++++ ++.||.|||+|.|.+...+ +....|.|+|||+
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~wne~f~f~v~~~~-~~~~~l~~~V~d~   94 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSE-LAGKTLVMAVYDF   94 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCC-SCSSCEEEEEEEECCCGGG-CTTCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCccc-CCCCCeeCceEEEEechHH-hCcCEEEEEEEEC
Confidence            4689999999999999999889999999999853   456787775 6899999999999876532 1357899999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      +.+++|++||++.              +++.++...... ..|+.|.+...    ......|+|.+++.|.|
T Consensus        95 d~~~~~~~lG~~~--------------i~l~~l~~~~~~-~~w~~L~~~~~----~~~~~~G~i~l~l~~~p  147 (284)
T 2r83_A           95 DRFSKHDIIGEFK--------------VPMNTVDFGHVT-EEWRDLQSAEK----EEQEKLGDICFSLRYVP  147 (284)
T ss_dssp             CSSSCCCEEEEEE--------------EEGGGCCCSSCE-EEEEECBCCSS----CCCCCCCEEEEEEEEET
T ss_pred             CCCCCCceeEEEE--------------EcchhcccCCcc-eeEEEeecccc----ccccccccEEEEEEecC
Confidence            9999999999999              999888765544 67877765431    12346799999999976

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.88  E-value=3.2e-22  Score=137.09  Aligned_cols=108  Identities=18%  Similarity=0.221  Sum_probs=89.2

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.   .+..+|++++ ++.||+|||+|.|.+...+ +....|.|+|||+
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d~  117 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSE-LGGKTLVMAVYDF  117 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCT-TCSSCEEEEEEEECCCHHH-HTTCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccC-CCCCCcCcccEEEeecHHH-cCCCEEEEEEEEC
Confidence            467999999999999999988999999999983   4567787775 6899999999999876422 1247899999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP  126 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~  126 (151)
                      +.+++|++||++.              +++.++...... ..|+.|.+
T Consensus       118 d~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~W~~L~~  150 (152)
T 1rsy_A          118 DRFSKHDIIGEFK--------------VPMNTVDFGHVT-EEWRDLQS  150 (152)
T ss_dssp             CSSSCCEEEEEEE--------------EEGGGCCCSSCE-EEEEECBC
T ss_pred             CCCCCCcEEEEEE--------------EEchhccCCCCc-ceEEECCC
Confidence            9999999999999              999888654444 67877764

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.88  E-value=1.9e-22  Score=137.55  Aligned_cols=110  Identities=12%  Similarity=0.128  Sum_probs=91.6

Q ss_pred             CCcEEEEEEEEeeCCCCCC-CCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTN-IFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      ..+.|.|+|++|++|+..+ ..+.+||||++.+..     .+.+|++.+ ++.||+|||+|.|.++..+ +....|.|+|
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-~~~~~L~~~V   98 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR-DTVNPLYDETLRYEIPESL-LAQRTLQFSV   98 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCS-SCSSCEEEEEEEEECCSTT-GGGCEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCC-CCCCCcEeeEEEEEeChhH-hCceEEEEEE
Confidence            3588999999999999887 578899999999862     356777765 6999999999999987744 2456799999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccc
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAP  128 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~  128 (151)
                      ||++.+++|++||++.              +++.++...... ..|+.|+++.
T Consensus        99 ~d~d~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~W~~L~~~~  136 (148)
T 3fdw_A           99 WHHGRFGRNTFLGEAE--------------IQMDSWKLDKKL-DHCLPLHGKI  136 (148)
T ss_dssp             EEECGGGCEEEEEEEE--------------EEHHHHHHHCCS-EEEEECBCC-
T ss_pred             EECCCCcCCcEEEEEE--------------EEcccccccCCc-cceEECcCcc
Confidence            9999999999999999              999988765555 7898888765

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.87  E-value=2.6e-22  Score=135.53  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=89.3

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE-----CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARC-----GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+     ..+.++|++++ ++.||+|||+|.|.+...+.+....|.|+||
T Consensus        19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEPKWNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCS-SCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCcccc-CCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence            35789999999999999998899999999988     34567888776 5999999999999843222224578999999


Q ss_pred             ECCCCCC--CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           77 DTELLTD--GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        77 d~~~~~~--d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      |++.+++  +++||++.              +++.++...+ . ..|+.|.+.
T Consensus        98 d~d~~~~~~~~~lG~~~--------------i~l~~l~~~~-~-~~W~~L~~~  134 (141)
T 1v27_A           98 DQARVREEESEFLGEIL--------------IELETALLDD-E-PHWYKLQTH  134 (141)
T ss_dssp             EBCSSSSCCBCCCEEEE--------------EEGGGCCCSS-E-EEEEECBCC
T ss_pred             ECCCCcCCCCceEEEEE--------------EEccccCCCC-C-CceEECccc
Confidence            9999887  99999999              9998886544 3 678888765

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.87  E-value=6.5e-22  Score=135.05  Aligned_cols=106  Identities=18%  Similarity=0.262  Sum_probs=89.2

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|+|++|++|+..+..+.+||||++.+.     ....+|++++ ++.||+|||+|.|.+...+  ....|.|+|||
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~--~~~~L~i~V~d  106 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-CSLNPEWNETFRFQLKESD--KDRRLSVEIWD  106 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCS-SCSSCEEEEEEEEECCSGG--GGCEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeC-CCCCCcCCcEEEEEecccc--CCCEEEEEEEE
Confidence            57899999999999999988999999999986     3567888776 5999999999999987643  34689999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      ++.+++|++||++.              +++.++.... . ..|+.|.+.
T Consensus       107 ~d~~~~~~~iG~~~--------------i~l~~l~~~~-~-~~W~~L~~~  140 (149)
T 1a25_A          107 WDLTSRNDFMGSLS--------------FGISELQKAG-V-DGWFKLLSQ  140 (149)
T ss_dssp             CCSSSCCEEEEEEE--------------EEHHHHTTCC-E-EEEEECBCH
T ss_pred             CCCCCCCCEEEEEE--------------EEHHHhCcCc-c-CCeEEccCC
Confidence            99999999999999              8888886543 3 677777643

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.87  E-value=1.8e-21  Score=131.14  Aligned_cols=110  Identities=16%  Similarity=0.205  Sum_probs=88.6

Q ss_pred             CCcEEEEEEEEeeCCCCCCCC-CCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEE-EeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIF-GTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFE-FPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~-v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+.. +.+||||++.+.   .+.++|++++ ++.||+|||+|.|. ++..+ +....|.|+||
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~v~~~~-~~~~~l~i~V~   97 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFYGIPYTQ-IQELALHFTIL   97 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCS-SCSSCEEEEEEEEECCCSTT-GGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCc-CCCCCcEeeEEEEcCcCHHH-hccCEEEEEEE
Confidence            357899999999999999985 889999999985   3567888776 69999999999995 65533 24578999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      |++.+++|++||++.              +++.++........-|..|.++
T Consensus        98 d~d~~~~~~~lG~~~--------------i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           98 SFDRFSRDDIIGEVL--------------IPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             EECSSCCCCCCEEEE--------------EECTTCCCTTCCEEEEEECBSS
T ss_pred             ECCCCCCCcEEEEEE--------------EehhHccCCCCcchhhhhhhcC
Confidence            999999999999999              9999987544331345666544

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.87  E-value=1.2e-21  Score=134.47  Aligned_cols=107  Identities=13%  Similarity=0.210  Sum_probs=87.6

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.     ..+.+|++++ ++.||.|||+|.|.+...+  ....|.|+||
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~--~~~~L~i~V~  100 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVP-DCRDPAFHEHFFFPVQEED--DQKRLLVTVW  100 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCT-TCSSCEEEEEEEEECCGGG--TTSEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccC-CCCCCccccEEEEecccHH--hCCEEEEEEE
Confidence            4689999999999999988 6889999999983     3457787775 6999999999999985533  3356999999


Q ss_pred             ECCCCCC-CcccEEEEEeccccccccceeeeecCcccc-cCCCcceeeeeecc
Q 047744           77 DTELLTD-GGFVGETVFSYIHDQTSVNQCRYYLGGIIT-DQSNDKELIEVKPA  127 (151)
Q Consensus        77 d~~~~~~-d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~-~~~~~~~~~~l~~~  127 (151)
                      |++.+++ |++||++.              +++.++.. .... .+|+.|.+.
T Consensus       101 d~d~~~~~d~~lG~~~--------------i~l~~l~~~~~~~-~~W~~L~~~  138 (153)
T 3fbk_A          101 NRASQSRQSGLIGCMS--------------FGVKSLLTPDKEI-SGWYYLLGE  138 (153)
T ss_dssp             ECCSSGGGCEEEEEEE--------------EEHHHHTC--CCE-EEEEECBCT
T ss_pred             eCCCCCCCCcEEEEEE--------------EEHHHhcCCCCcc-ccEEECCCh
Confidence            9999887 99999999              99988874 3333 688888765

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.86  E-value=5.6e-21  Score=143.82  Aligned_cols=128  Identities=15%  Similarity=0.247  Sum_probs=99.2

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE---CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARC---GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+   +.+..+|++++ ++.||.|||+|.|.+...+ +....|.|+|||+
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-l~~~~L~~~V~d~   95 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSVPLAE-LAQRKLHFSVYDF   95 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCC-SCSSCEEEEEEEEECCGGG-GSSCCCEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccC-CCCCCcEeeEEEEEecHHH-hcCCEEEEEEEEc
Confidence            46889999999999999998999999999998   45667888775 6899999999999986532 1346899999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeee-cCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYY-LGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      +.+++|++||++.              ++ +.++.........|+.|.+..     ......|+|.+++.|.|
T Consensus        96 d~~~~~~~iG~~~--------------i~~l~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A           96 DRFSRHDLIGQVV--------------LDNLLELAEQPPDRPLWRDILEGG-----SEKADLGELNFSLCYLP  149 (296)
T ss_dssp             CSSSCCCEEEEEE--------------CCCTTGGGSSCSSCCCCEECBCCS-----SCCSCCCEEEEEEEEET
T ss_pred             CCCCCCceEEEEE--------------eccccccccCCccceeeecccccc-----ccccccceEEEEEEecc
Confidence            9999999999999              74 444443222214576665432     13345799999999876

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.86  E-value=4.4e-21  Score=129.47  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=85.5

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC---Ce-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG---NQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      ..+.|.|+|++|++   .+..+.+||||++.+.   .. .++|++++ ++.||+|||+|.|.++..+ +....|.|+|||
T Consensus        24 ~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~-~tlnP~wnE~f~f~v~~~~-l~~~~L~~~V~d   98 (138)
T 1wfm_A           24 QKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKK-RQLHTTWEEGLVLPLAEEE-LPTATLTLTLRT   98 (138)
T ss_dssp             TTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCC-CCSSEECSSCEEEECCTTS-STTCEEEEEEEE
T ss_pred             CCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCc-CCCCCcCCceEEEEecHHH-cCCCEEEEEEEE
Confidence            36789999999993   5677899999999983   22 46777765 6999999999999987643 245789999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      ++.+++|++||++.              ++|.++...... ..|+.|.+.
T Consensus        99 ~d~~~~dd~lG~~~--------------i~l~~l~~~~~~-~~W~~L~~~  133 (138)
T 1wfm_A           99 CDRFSRHSVAGELR--------------LGLDGTSVPLGA-AQWGELKTS  133 (138)
T ss_dssp             CCSSCTTSCSEEEE--------------EESSSSSSCTTC-CEEEECCCC
T ss_pred             CCCCCCCcEEEEEE--------------EEcccccCcccc-cceeeCcCC
Confidence            99999999999999              999998644444 678877653

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.86  E-value=1.3e-21  Score=136.71  Aligned_cols=106  Identities=15%  Similarity=0.176  Sum_probs=87.3

Q ss_pred             CcEEEEEEEEeeCCCCCCC-CCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNI-FGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      .+.|.|+|++|++|+..+. .+.+||||++.+..     ..++|++++ ++.||+|||+|.|.+..    ....|.|+||
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~----~~~~L~~~V~  103 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR-KTLDPLYQQSLVFDESP----QGKVLQVIVW  103 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEECSSCC----TTEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCC-CCCCCCCCcEEEEEecC----CCCEEEEEEE
Confidence            5789999999999999985 68999999998753     256777775 68999999999998865    3578999999


Q ss_pred             -ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccc
Q 047744           77 -DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAP  128 (151)
Q Consensus        77 -d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~  128 (151)
                       |++.+++|++||++.              +++.++...... ..|+.|.+..
T Consensus       104 ~d~d~~~~d~~iG~~~--------------i~l~~l~~~~~~-~~W~~L~~~~  141 (171)
T 2q3x_A          104 GDYGRMDHKCFMGVAQ--------------ILLEELDLSSMV-IGWYKLFPPS  141 (171)
T ss_dssp             EECSTTCSSEEEEEEE--------------ECGGGSCTTSCE-EEEEECBCGG
T ss_pred             EcCCCCCCCCEEEEEE--------------EEHHHcccCCCc-ceeEECCCcc
Confidence             999999999999999              888888654444 6788887654

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=2e-22  Score=136.35  Aligned_cols=108  Identities=17%  Similarity=0.250  Sum_probs=88.6

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe--------------eeEEeeeeCCCCCCeeceEEEEE-EeCCCccc
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ--------------EHRSKNSMVKGEKAWWNEKFIFE-FPMSDWKL   67 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~--------------~~~T~~~~~~~~nP~wne~f~f~-v~~~~~~~   67 (151)
                      .|.|.|+|++|++|+..+..+.+||||++.+...              ..+|++++ ++.||+|||+|.|. ++..+ +.
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~v~~~~-l~   94 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQ-LM   94 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHHH-HT
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccC-CCCCCCCCCEEEECCcCHHH-cc
Confidence            4789999999999999998899999999999753              35777765 58999999999996 54321 13


Q ss_pred             cceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           68 LTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        68 ~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      ...|.|+|||++.+++|++||++.              +++.++...... ..|+.|.+.
T Consensus        95 ~~~l~i~V~d~d~~~~~~~lG~~~--------------i~l~~l~~~~~~-~~W~~L~~~  139 (142)
T 1rh8_A           95 KKTLEVTVWDYDRFSSNDFLGEVL--------------IDLSSTSHLDNT-PRWYPLKEQ  139 (142)
T ss_dssp             TCEEEEEEEEECSSSCEEEEEEEE--------------EETTSCGGGTTC-CEEEECBCC
T ss_pred             CCEEEEEEEECCCCCCCceEEEEE--------------EeccccccCCCC-CeEEECCcc
Confidence            468999999999999999999999              999988755544 678777654

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=4e-21  Score=129.99  Aligned_cols=108  Identities=11%  Similarity=0.129  Sum_probs=86.0

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+..+ +||||++.+..     ..++|++++ ++.||+|||+|.|.+...+ +....|.|+||
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~   98 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSK-KTLNPVFDQSFDFSVSLPE-VQRRTLDVAVK   98 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCC-SCSSCEEEEEEEECCCHHH-HHHCEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccC-CCCCCCcCceEEEEecHHH-hCcCEEEEEEE
Confidence            3678999999999999999888 99999999832     456887776 6999999999999876422 13458999999


Q ss_pred             ECCCCCC--CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           77 DTELLTD--GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        77 d~~~~~~--d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      |++.+++  +++||++.              +++.++...... ..|+.|.+.
T Consensus        99 d~d~~~~~~~~~iG~~~--------------i~l~~~~~~~~~-~~W~~L~~~  136 (142)
T 2dmg_A           99 NSGGFLSKDKGLLGKVL--------------VALASEELAKGW-TQWYDLTED  136 (142)
T ss_dssp             ECCCSSCCSCCCCEEEE--------------EECCCSTTTTCB-CCBCCCBCS
T ss_pred             ECCCccccCCcEEEEEE--------------Eecccccccccc-cceeeccCC
Confidence            9998763  57999999              999988654443 566666543

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=133.49  Aligned_cols=109  Identities=14%  Similarity=0.187  Sum_probs=87.0

Q ss_pred             CCcEEEEEEEEeeCCCCC-C------CCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceE
Q 047744            2 KGGILEVLLVNAEGIKHT-N------IFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHI   71 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~-~------~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L   71 (151)
                      ..+.|.|+|++|++|+.. +      ..+.+||||++.+.   .+.++|++.+ ++.||+|||+|.|.+...+ +....|
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-l~~~~L  101 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR-KTQKPVFEERYTFEIPFLE-AQRRTL  101 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCC-SCSSCCCCBCCEECCCHHH-HHHSEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeeccc-CCCCCeEeeeEEEEeChHH-hccCEE
Confidence            467999999999999874 3      34589999999985   3467787765 6999999999999876422 134689


Q ss_pred             EEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           72 KFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        72 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      .|+|||++.+++|++||++.              +++.++...... ..|+.|.|.
T Consensus       102 ~~~V~d~d~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~w~~L~~~  142 (147)
T 2enp_A          102 LLTVVDFDKFSRHCVIGKVS--------------VPLCEVDLVKGG-HWWKALIPS  142 (147)
T ss_dssp             EEEEECCSTTCCSCCCEEEE--------------EETTTSCTTTCC-CEEECCBCC
T ss_pred             EEEEEECCCCcCCcEEEEEE--------------EechhcCCCCCc-cEEEEeecC
Confidence            99999999999999999999              999998655444 567777654

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.86  E-value=1.9e-21  Score=131.56  Aligned_cols=99  Identities=20%  Similarity=0.347  Sum_probs=82.9

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEE-EeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFE-FPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~-v~~~~~~~~~~L~v~v   75 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+..     ..++|++++ ++.||+|||+|.|. ++..+ +....|.|+|
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~-~~~~~l~i~V  104 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLR-NTRNPVWNETLQYHGITEED-MQRKTLRISV  104 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCC-SCSSCEEEEEEEEESCCHHH-HHHCEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCC-CCCCCcCcCEEEEcccCHHH-ccCCEEEEEE
Confidence            3578999999999999999889999999999864     567888776 69999999999998 54321 1246899999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCC
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQS  116 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~  116 (151)
                      ||++.+++|++||++.              +++.++.....
T Consensus       105 ~d~d~~~~d~~iG~~~--------------i~l~~l~~~~~  131 (142)
T 2chd_A          105 CDEDKFGHNEFIGETR--------------FSLKKLKANQR  131 (142)
T ss_dssp             EEECTTSCEEEEEEEE--------------EEGGGCCTTCC
T ss_pred             EECCCCCCCcEEEEEE--------------EEHHHcCCCCc
Confidence            9999999999999999              88888865443

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.85  E-value=9.8e-21  Score=127.19  Aligned_cols=88  Identities=22%  Similarity=0.340  Sum_probs=75.3

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.+     .+.+|++++ ++.||.|||+|.|.+...+ +....|.|+||
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~-l~~~~l~~~V~   91 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK-RNLNPIFNESFAFDIPTEK-LRETTIIITVM   91 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCS-SCSSCEEEEEEEEECCGGG-GGGEEEEEEEE
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCcccc-CCCCCcCcceEEEECChhh-cCceEEEEEEE
Confidence            4688999999999999999888999999999853     356676665 6899999999999987633 13468999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++.+++|++||++.
T Consensus        92 d~~~~~~~~~lG~~~  106 (138)
T 3n5a_A           92 DKDKLSRNDVIGKIY  106 (138)
T ss_dssp             ECCSSSCCEEEEEEE
T ss_pred             ECCCCCCCcEEEEEE
Confidence            999999999999999

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.85  E-value=1.4e-20  Score=129.68  Aligned_cols=88  Identities=18%  Similarity=0.374  Sum_probs=75.4

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+..     ...+|++++ ++.||.|||+|.|.+...+ +....|.|+||
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-l~~~~l~i~V~  100 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQ-IQKVQVVVTVL  100 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEEEECCGGG-GGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceec-CCCCCcccceEEEEcCHHH-hCCcEEEEEEE
Confidence            4689999999999999999889999999998852     356777765 6999999999999987533 13468999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++.+++|++||++.
T Consensus       101 d~d~~~~~~~iG~~~  115 (159)
T 1tjx_A          101 DYDKIGKNDAIGKVF  115 (159)
T ss_dssp             ECCSSSCCEEEEEEE
T ss_pred             ECCCCCCCceEEEEE
Confidence            999999999999999

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.85  E-value=2e-20  Score=129.81  Aligned_cols=88  Identities=16%  Similarity=0.246  Sum_probs=76.6

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+..     ...+|++++ ++.||+|||+|.|.+...+ +....|.|+||
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~  112 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK-KTLNPEFNEEFFYDIKHSD-LAKKSLDISVW  112 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCC-SCSSCEEEEEEEEECCGGG-GGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCccc-CCCCCcccceEEEEcchHh-cCCCEEEEEEE
Confidence            4688999999999999999889999999999865     567787775 6999999999999986532 23568999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++.+++|++||++.
T Consensus       113 d~d~~~~~~~iG~~~  127 (166)
T 2cm5_A          113 DYDIGKSNDYIGGCQ  127 (166)
T ss_dssp             ECCSSSCCEEEEEEE
T ss_pred             ECCCCCCCcEEEeEE
Confidence            999999999999999

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.84  E-value=5.8e-20  Score=123.30  Aligned_cols=118  Identities=12%  Similarity=0.144  Sum_probs=98.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG   84 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d   84 (151)
                      .|+|.|.+|.+|+     +++|||+++.+.+.+++|+++++++.||+|||.|.|.+.... +..+.|.|.|+|+++++++
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~l-d~~e~L~v~V~d~~~v~~n   95 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSI-DRNEVLEIQIFNYSKVFSN   95 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCC-CTTCEEEEEEEEECTTSCC
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCC-CCCCEEEEEEEECccccCC
Confidence            5889999999998     478999999999999999999756899999999999998743 4788999999999999999


Q ss_pred             cccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCc-cceEEEEEEEEEe
Q 047744           85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT-YKGQIVIGFKFIV  150 (151)
Q Consensus        85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~G~i~~~~~~~~  150 (151)
                      ++||++.              ++|+++..++.. .-.       ..+++.+.+ ..++|.++++|.|
T Consensus        96 rlIG~~~--------------i~Lq~lv~~~~l-~l~-------~~LvD~n~~~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           96 KLIGTFR--------------MVLQKVVEENRV-EVS-------DTLIDDNNAIIKTSLSMEVRYQA  140 (144)
T ss_dssp             EEEEEEE--------------EESHHHHHHSEE-EEE-------EEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CEEEEEE--------------EEhHHhccCCeE-EEe-------ecccCCCCCccccEEEEEEEecC
Confidence            9999999              999999876644 212       234444444 3499999999987

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.84  E-value=4.8e-20  Score=126.17  Aligned_cols=88  Identities=19%  Similarity=0.356  Sum_probs=70.1

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCe---eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQ---EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~---~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+  .+.   +++|++++ ++.||+|||+|.|.+...+ +....|.|+||
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-l~~~~l~v~V~  105 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDIPCES-LEEISVEFLVL  105 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCC-SCSSEEEEEEEEEECCSSS-STTEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCccc-CCCCCeecceEEEECCHHH-hCceEEEEEEE
Confidence            46789999999999999998899999999998  333   45777775 6999999999999987643 23468999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++.+++|++||++.
T Consensus       106 d~d~~~~~~~lG~~~  120 (153)
T 1w15_A          106 DSERGSRNEVIGRLV  120 (153)
T ss_dssp             ECCTTSCCEEEEEEE
T ss_pred             eCCCCCCCcEEEEEE
Confidence            999999999999999

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.83  E-value=5.2e-20  Score=147.33  Aligned_cols=119  Identities=18%  Similarity=0.238  Sum_probs=98.2

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      .|+|.|+|++|++|+..+..|.+||||++.++++..+|++++ ++.||.|||+|.|.+...   ....|.|+|||++.++
T Consensus       386 ~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~-~t~nP~w~e~f~f~~~~~---~~~~l~~~v~d~d~~~  461 (510)
T 3jzy_A          386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQ-DTLNPKWNFNCQFFIKDL---YQDVLCLTLFDRDQFS  461 (510)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCS-SCSSCEEEEEEEEEESCT---TTCEEEEEEEECCSSS
T ss_pred             CceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccC-CCCCCccCceEEEEecCC---CCCEEEEEEEeCCCCC
Confidence            478999999999999999999999999999999999998876 689999999999998764   3468999999999999


Q ss_pred             CCcccEEEEEeccccccccceeeeecCcccccCCC---cceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN---DKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      +|++||++.              +++.++...+..   ...|+.+          .+...|+|.+.+.+.
T Consensus       462 ~~d~lG~~~--------------~~l~~l~~~~~~~~~~~~~~~l----------~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          462 PDDFLGRTE--------------IPVAKIRTEQESKGPMTRRLLL----------HEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SCCEEEEEE--------------EEHHHHHHHHHHHCSCCEEEEC----------BSSSSCEEEEEEEEE
T ss_pred             CCCceEEEE--------------EEHHHhccccCCCCceeeeecC----------CCCCCceEEEEEEEE
Confidence            999999999              999888653321   0233333          344679999888763

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.82  E-value=2.3e-19  Score=144.57  Aligned_cols=85  Identities=19%  Similarity=0.208  Sum_probs=75.9

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      .+.|.|+|++|++|+. |..|++||||++.+++++.+|++++ ++.||+|||+|.|.+....  ....|.|+|||+|.++
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik-~tlNP~Wne~f~f~~~~~~--~~~~L~~~V~D~D~~~  468 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVW-NNNNPRWTDKMDFENVLLS--TGGPLRVQVWDADYGW  468 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBC-SCSSCBCCCCEEEEEEETT--TCCCEEEEEEECCSSS
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeec-CCCCCCCCeEEEEEEecCC--CCCEEEEEEEECCCCC
Confidence            4789999999999998 9899999999999999999999886 6899999999999864322  3578999999999999


Q ss_pred             CCcccEEEE
Q 047744           83 DGGFVGETV   91 (151)
Q Consensus        83 ~d~~iG~~~   91 (151)
                      +||+||++.
T Consensus       469 ~dD~LG~~~  477 (540)
T 3nsj_A          469 DDDLLGSCD  477 (540)
T ss_dssp             CCEEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999999999

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.78  E-value=3.2e-19  Score=147.87  Aligned_cols=125  Identities=14%  Similarity=0.207  Sum_probs=100.4

Q ss_pred             CCcEEEEEEEEeeCCCC---CCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKH---TNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~---~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v   75 (151)
                      +.+.|.|+|++|++|+.   .+..+.+||||++.+.+   .+++|++++ ++.||+|||+|.|.+...   ....|.|+|
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik-~tlNPvWNEtF~F~v~~~---~~~~L~~~V   91 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFEFILDPN---QENVLEITL   91 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCT-TCSSCEEEEEEEEEECTT---SCCBCEEEE
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEc-CCCCCeeeeEEEEEecCC---CCCEEEEEE
Confidence            46899999999999998   77788999999999974   567888876 699999999999999864   346899999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEE
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGF  146 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~  146 (151)
                      ||++.++ |++||++.              +++.++...... ..|+.|.+..+..+...++.++++.|.+
T Consensus        92 ~D~D~~~-ddfIG~v~--------------I~L~~L~~g~~~-~~w~~L~~~~e~~l~~~~e~c~~l~VRl  146 (749)
T 1cjy_A           92 MDANYVM-DETLGTAT--------------FTVSSMKVGEKK-EVPFIFNQVTEMVLEMSLEVCSCPDLRF  146 (749)
T ss_dssp             EECCSSS-CEEEEEEC--------------CBSTTSCTTCCC-CEEEEETTTEEEEEEECCEECCSCSSEE
T ss_pred             EECCCCC-CceeEEEE--------------EEHHHcCCCCce-EEEEecCCCceEeeeccccccccccccc
Confidence            9999998 99999999              999998755555 7899998775443333445555544443

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=4.9e-18  Score=126.69  Aligned_cols=87  Identities=18%  Similarity=0.376  Sum_probs=74.5

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC--C---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG--N---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|.|++|++|+..+..+.+||||++.+.  +   .+.+|++.+ ++.||.|||+|.|.++..+ +....|.|+|||
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-l~~~~l~i~V~d  226 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQ-IQKVQVVVTVLD  226 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEEEECCTTT-GGGEEEEEEEEE
T ss_pred             CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceec-CCCCCEEceeEEEeCCHHH-hCceEEEEEEEe
Confidence            57899999999999999988999999999884  2   345676665 6899999999999987644 235679999999


Q ss_pred             CCCCCCCcccEEEE
Q 047744           78 TELLTDGGFVGETV   91 (151)
Q Consensus        78 ~~~~~~d~~iG~~~   91 (151)
                      ++.++++++||++.
T Consensus       227 ~d~~~~~~~iG~~~  240 (284)
T 2r83_A          227 YDKIGKNDAIGKVF  240 (284)
T ss_dssp             CCSSSCCCEEEEEE
T ss_pred             CCCCCCCcEEEEEE
Confidence            99999999999999

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.75  E-value=2.4e-17  Score=135.02  Aligned_cols=120  Identities=14%  Similarity=0.258  Sum_probs=94.0

Q ss_pred             CCcEEEEEEEEeeCCCCCCC--CCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNI--FGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFR   74 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~   74 (151)
                      ..+.|.|+|++|++|+..+.  .+.+||||++.+.+     .+.+|+++++++.||+|||+|.|.+..++   ...|.|+
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~e---l~~L~~~  571 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD---LALVRFM  571 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGG---GCEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCC---CCEEEEE
Confidence            35789999999999998874  67899999999844     57788888754599999999999988643   3689999


Q ss_pred             EEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCc--cceEEEEEEEEE
Q 047744           75 IMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT--YKGQIVIGFKFI  149 (151)
Q Consensus        75 v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~G~i~~~~~~~  149 (151)
                      |||++.+++|++||++.              +++..+.. +   ..|+.|       ....|.  ..|.|.|.++|.
T Consensus       572 V~D~D~~~~dd~iG~~~--------------ipl~~L~~-G---~r~v~L-------~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          572 VEDYDSSSKNDFIGQST--------------IPWNSLKQ-G---YRHVHL-------LSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             EEECCSSSCCEEEEEEE--------------EEGGGBCC-E---EEEEEE-------ECTTSCEEEEEEEEEEEEEE
T ss_pred             EEEcCCCCCCceeEEEE--------------EEHHHcCC-C---cEEEeC-------CCCCcCCCCceEEEEEEEEE
Confidence            99999999999999999              99988853 1   113333       233444  358888888774

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.71  E-value=5.2e-18  Score=127.59  Aligned_cols=87  Identities=16%  Similarity=0.284  Sum_probs=74.7

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC--C---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG--N---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .|.|.|.|++|++|+..+..+.+||||++.+.  +   .+++|++.+ ++.||.|||.|.|.++... +....|.|+|||
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d  228 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALVFDVAPES-VENVGLSIAVVD  228 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCC-SCSSCEEEECCCCCCCSGG-GGSCCCCCEEEE
T ss_pred             cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceec-CCCCCeECceEEEEcCHHH-ccCcEEEEEEEe
Confidence            58899999999999999988999999999885  2   356777765 6999999999999887633 134579999999


Q ss_pred             CCCCCCCcccEEEE
Q 047744           78 TELLTDGGFVGETV   91 (151)
Q Consensus        78 ~~~~~~d~~iG~~~   91 (151)
                      ++.+++|++||++.
T Consensus       229 ~d~~~~~~~iG~~~  242 (296)
T 1dqv_A          229 YDCIGHNEVIGVCR  242 (296)
T ss_dssp             CCSSSCCEEEEECC
T ss_pred             CCCCCCCceEEEEE
Confidence            99999999999999

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.65  E-value=1.3e-17  Score=133.11  Aligned_cols=123  Identities=11%  Similarity=0.205  Sum_probs=18.7

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-eeEEeeeeCCC---CCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-EHRSKNSMVKG---EKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~---~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      .+.|+|+|++|++|+.++     ||||++.++++ ..||++.+ ++   .||+|||+|.|.+..    ....|.|+|||.
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~-kt~~glnP~WnE~F~f~~~~----~~~~L~v~V~d~   79 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKP-RSASGDTVFWGEHFEFNNLP----AVRALRLHLYRD   79 (483)
T ss_dssp             EECC---------------------------------------------------CCEECC-------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEe-CCCCCCCCccccEEEEecCC----CccEEEEEEEec
Confidence            468999999999998876     99999998775 45777765 56   999999999998643    237899999994


Q ss_pred             -C---CCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec-cccce----------------ecCCCc
Q 047744           79 -E---LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP-APYNV----------------LLEDDT  137 (151)
Q Consensus        79 -~---~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~-~~~~~----------------~~~~~~  137 (151)
                       +   .+++|++||++.              +++.++...... +.|+.|.. ....-                ......
T Consensus        80 ~d~~~~~~~d~~lG~v~--------------i~l~~l~~~~~~-~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  144 (483)
T 3bxj_A           80 SDKKRKKDKAGYVGLVT--------------VPVATLAGRHFT-EQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKG  144 (483)
T ss_dssp             -----------------------------------------CC-EECC--------------------------------
T ss_pred             CCccccCCCCceEEEEE--------------EEHHHhcCCCCC-CeEEECCCCCCccccccccccccccccccccccCCC
Confidence             4   367899999999              999988755544 67887742 22100                000113


Q ss_pred             cceEEEEEEEEEe
Q 047744          138 YKGQIVIGFKFIV  150 (151)
Q Consensus       138 ~~G~i~~~~~~~~  150 (151)
                      ..|.|++.++|.+
T Consensus       145 ~~G~lrL~v~~~~  157 (483)
T 3bxj_A          145 GCPAVRLKARYQT  157 (483)
T ss_dssp             ------CEEEEEE
T ss_pred             CCceEEEEEEeee
Confidence            4699999999975

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.64  E-value=5.2e-16  Score=128.24  Aligned_cols=94  Identities=22%  Similarity=0.331  Sum_probs=79.4

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE-----CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARC-----GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|++++|++|+..+..+.+||||++.+     ...+.+|++++ ++.||.|||+|.|.+...+  ....|.|+||
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~-~tlnP~wne~f~f~~~~~~--~~~~L~v~v~  246 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-SSLNPEWNETFRFQLKESD--KDRRLSVEIW  246 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCS-SCSSCEEEEEEEEECCSTT--TTCEEEEEEE
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccc-cccCCCccceeeeecccCC--ccceeeeEEe
Confidence            35789999999999999999999999999998     34567787775 6899999999999987654  4567999999


Q ss_pred             ECCCCCCCcccEEEEEeccccc
Q 047744           77 DTELLTDGGFVGETVFSYIHDQ   98 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~   98 (151)
                      |++.+++|++||++.+++.++.
T Consensus       247 d~d~~~~dd~iG~~~i~l~~l~  268 (674)
T 3pfq_A          247 DWDLTSRNDFMGSLSFGISELQ  268 (674)
T ss_dssp             ECCSSSCCEECCBCCCBTTHHH
T ss_pred             ecccccccccccccccchhhhc
Confidence            9999999999999995444443

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.54  E-value=1.9e-13  Score=114.43  Aligned_cols=85  Identities=25%  Similarity=0.478  Sum_probs=71.3

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-------eeeEEeeeeCCCCCCeeceE-EEEE-EeCCCccccceEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-------QEHRSKNSMVKGEKAWWNEK-FIFE-FPMSDWKLLTHIKF   73 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~~~~nP~wne~-f~f~-v~~~~~~~~~~L~v   73 (151)
                      .++|.|+|++|++|+..    .+||||++.+.+       ++++|+++++++.||+|||+ |.|. +..++   ...|+|
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pe---la~Lrf  721 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPD---LAVVRI  721 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGG---GCEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCC---ccEEEE
Confidence            36899999999999864    589999999864       56788888766899999998 9998 76543   368999


Q ss_pred             EEEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744           74 RIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        74 ~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      +|||++    +++||++.              +||..+.
T Consensus       722 ~V~D~d----ddfiG~~~--------------ipL~~L~  742 (816)
T 3qr0_A          722 IVSEEN----GKFIGHRV--------------MPLDGIK  742 (816)
T ss_dssp             EEEETT----SCEEEEEE--------------EESTTCC
T ss_pred             EEEecC----CCeeeEEE--------------EEHHHcC
Confidence            999985    78999999              9988875

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.54  E-value=1.2e-13  Score=116.39  Aligned_cols=110  Identities=17%  Similarity=0.246  Sum_probs=83.0

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC------eeeEEeeeeCCCCCCeece-EEEEE-EeCCCccccceEEEEE
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGN------QEHRSKNSMVKGEKAWWNE-KFIFE-FPMSDWKLLTHIKFRI   75 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~~~nP~wne-~f~f~-v~~~~~~~~~~L~v~v   75 (151)
                      .+|.|+|++|++|+..    .+||||++.+.+      .+++|+++++++.||+||| +|.|. +..++   ...|+|+|
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe---la~Lrf~V  797 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT---LASLRIAA  797 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG---GCEEEEEE
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCC---cCEEEEEE
Confidence            4799999999999863    589999999854      2468888876679999999 69998 65533   35899999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCc--cceEEEEEEEEE
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT--YKGQIVIGFKFI  149 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~G~i~~~~~~~  149 (151)
                      ||++    +++||++.              +||..+..      |...+     .|....|.  ..|.|.|.+.+.
T Consensus       798 ~D~d----ddfiG~~~--------------lpL~~L~~------GyR~v-----pL~~~~g~~l~~atLfv~i~~~  844 (885)
T 3ohm_B          798 FEEG----GKFVGHRI--------------LPVSAIRS------GYHYV-----CLRNEANQPLCLPALLIYTEAS  844 (885)
T ss_dssp             EETT----TEEEEEEE--------------EETTTCCC------EEEEE-----EEECTTSCEEEEEEEEEEEEEE
T ss_pred             EcCC----ccEEeeEE--------------EEHHHcCC------CceEE-----EecCCCCCccCceEEEEEEEEE
Confidence            9987    78999999              99998852      33322     12233444  358888887764

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.53  E-value=1.7e-13  Score=114.88  Aligned_cols=85  Identities=16%  Similarity=0.374  Sum_probs=70.5

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC------eeeEEe-eeeCCCCCCeece-EEEE-EEeCCCccccceEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN------QEHRSK-NSMVKGEKAWWNE-KFIF-EFPMSDWKLLTHIKF   73 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~~T~-~~~~~~~nP~wne-~f~f-~v~~~~~~~~~~L~v   73 (151)
                      .++|.|+|++|++|+.    +.+||||++.+.+      ++++|+ ++++++.||+||| +|.| .+..++   ...|+|
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e---l~~Lr~  749 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE---LASLRV  749 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG---GCEEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCC---ccEEEE
Confidence            5789999999999985    3589999999843      356888 7766689999999 6999 786543   358999


Q ss_pred             EEEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744           74 RIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        74 ~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      +|||++    +++||++.              +|+..+.
T Consensus       750 ~V~D~d----~d~iG~~~--------------ipl~~L~  770 (799)
T 2zkm_X          750 AVMEEG----NKFLGHRI--------------IPINALN  770 (799)
T ss_dssp             EEEETT----TEEEEEEE--------------EEGGGBC
T ss_pred             EEEEeC----CCccceEe--------------eehhhcC
Confidence            999986    78999999              9988874

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.37  E-value=1.9e-11  Score=79.81  Aligned_cols=112  Identities=8%  Similarity=0.064  Sum_probs=82.6

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee----eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ...|+|.+.++.--+........||||.+.++...    .+|.+.+.++..|+|||.|.-.+..     .+.|.+.|++.
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-----Gr~l~i~Vfh~   79 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-----GRVIQIVLMRA   79 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-----TCEEEEEEEEE
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-----CEEEEEEEEcC
Confidence            45788888776543222222358999999886543    2444667789999999999888875     47899999976


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCccccc-----CCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD-----QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      ..    +|++.++              +++++++..     +.. +.|..|+|            .|+|.+.++|+.
T Consensus        80 a~----~fvAn~t--------------V~~edL~~~c~~~~g~~-e~WvdLeP------------~Gkl~~~i~~~~  125 (126)
T 1yrk_A           80 AE----EPVSEVT--------------VGVSVLAERCKKNNGKA-EFWLDLQP------------QAKVLMSVQYFL  125 (126)
T ss_dssp             TT----EEEEEEE--------------EEHHHHHHHHHTTTTEE-EEEEECBS------------SCEEEEEEEEEB
T ss_pred             CC----CeeeEEE--------------EEHHHHHhhhccCCCce-EEEEeccc------------CcEEEEEEEEee
Confidence            54    8999999              999999843     222 67777754            599999998864

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.32  E-value=2.6e-11  Score=80.21  Aligned_cols=111  Identities=12%  Similarity=0.123  Sum_probs=81.0

Q ss_pred             CcEEEEEEEEeeCCCCCC-CCCCCCEEEEEEECCee----eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTN-IFGTPSYYVIARCGNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|+|.+.++.-.+... .....||||.+.++...    .+|-+.+.++..|+|||.|.-.+..     .+.|.|.|++
T Consensus         9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-----Gr~l~i~Vfh   83 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-----GRVMQIIVKG   83 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-----SCEEEEEEEC
T ss_pred             CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-----CeEEEEEEEc
Confidence            457889887776543322 12258999999886542    3342556678999999999887775     4789999996


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCccccc-----CCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD-----QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      ...    +|++.+.              +++.+++..     +.. +.|..|+|            .|+|.+.++|.
T Consensus        84 ~a~----~fVAn~t--------------V~~edL~~~ck~~~g~~-e~WvdLeP------------~Gkl~v~i~~~  129 (138)
T 2enj_A           84 KNV----DLISETT--------------VELYSLAERCRKNNGKT-EIWLELKP------------QGRMLMNARYF  129 (138)
T ss_dssp             SSC----SCCEEEE--------------EESHHHHHHHHHTTTCE-EEEEECBS------------SCEEEEEEEEC
T ss_pred             CCC----CeeeEEE--------------EEHHHHHhhhccCCCce-EEEEeccc------------CcEEEEEEEEE
Confidence            553    8999999              999999843     333 67877764            58888888875

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=95.76  E-value=0.2  Score=42.99  Aligned_cols=92  Identities=11%  Similarity=0.148  Sum_probs=60.5

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCee----eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ...+.|+|.++.++...   ...+-||.+.+  +++.    ..|+.+ ....+|.|||-+.|++...+......|.|+||
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~-~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEV-NVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCE-ESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccc-cCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            35789999999988643   24677887654  4432    233322 23678999999999887766556789999999


Q ss_pred             ECCCC--C----------CCcccEEEEEeccccc
Q 047744           77 DTELL--T----------DGGFVGETVFSYIHDQ   98 (151)
Q Consensus        77 d~~~~--~----------~d~~iG~~~~~~~~~~   98 (151)
                      +...-  +          .+..+|.+.+.++.-.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBCTT
T ss_pred             EecCCccCccccccccccccceEEEEeeeEECCc
Confidence            96321  1          2347899996666443

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=95.26  E-value=0.22  Score=43.32  Aligned_cols=99  Identities=10%  Similarity=0.108  Sum_probs=64.0

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCee----eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ...++|+|+++.++.... ....+-||.+.+  +++.    ..|+..  ...+|.|||-+.|.+.-.+......|.|+||
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~--~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~  430 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRV--PCSNPRWNEWLNYDIYIPDLPRAARLCLSIC  430 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCC--CTTSCEEEEEEEEEEEGGGCCTTCEEEEEEC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceecccc--CCCCCCCCeeEEecCccccCChhcEEEEEEE
Confidence            356899999998875322 223567888765  3332    223222  3568889999999887766556789999999


Q ss_pred             ECCCCC----CCcccEEEEEecccccccccee
Q 047744           77 DTELLT----DGGFVGETVFSYIHDQTSVNQC  104 (151)
Q Consensus        77 d~~~~~----~d~~iG~~~~~~~~~~~~~~~~  104 (151)
                      +.....    .+..||.+.+.++.-..-+.++
T Consensus       431 ~~~~~~~~~~~~~~lg~~n~~lfd~~~~L~~G  462 (1091)
T 3hhm_A          431 SVKGRKGAKEEHCPLAWGNINLFDYTDTLVSG  462 (1091)
T ss_dssp             CCCCCC-------CCEEEEEESBCTTCBBCCE
T ss_pred             EecCccCcccccceeEEeeeeeEccCCeEEcC
Confidence            865421    2347999997777555333333

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=93.71  E-value=0.91  Score=30.52  Aligned_cols=123  Identities=8%  Similarity=0.006  Sum_probs=76.4

Q ss_pred             CcEEEEEEEEeeCCCCC-CCCCCCCEEEEEEE---CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCc----cccceEEEE
Q 047744            3 GGILEVLLVNAEGIKHT-NIFGTPSYYVIARC---GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDW----KLLTHIKFR   74 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~-~~~~~~dpyv~v~~---~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~----~~~~~L~v~   74 (151)
                      .+.++|.|.++.--+.. ...+..+|..-+.+   +-+.+.|.++.  +.+|.+|-+-.|.+...+.    +....+.++
T Consensus        17 EnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lE   94 (156)
T 2yrb_A           17 ENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLE   94 (156)
T ss_dssp             CEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEE
T ss_pred             CcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEE
Confidence            35677888776421110 00123466544444   34556676665  7999999998888855321    124578899


Q ss_pred             EEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCC--ccceEEEEEEEEE
Q 047744           75 IMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDD--TYKGQIVIGFKFI  149 (151)
Q Consensus        75 v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~G~i~~~~~~~  149 (151)
                      +..... +.-+.||.++              |++.+++..+....+...|.       ...+  ..-|.|.+.+++-
T Consensus        95 Lhqa~g-~~~~tla~~~--------------I~l~~lLe~~~~i~g~~~L~-------g~~g~~~~~G~LeywiRL~  149 (156)
T 2yrb_A           95 VHQAYS-TEYETIAACQ--------------LKFHEILEKSGRIFCTASLI-------GTKGDIPNFGTVEYWFRLR  149 (156)
T ss_dssp             EEEECS-SCEEEEEEEE--------------ECCSHHHHCCSCEEEEEEEC-------BSSSCCTTSEEEEEEEEEE
T ss_pred             EEEeeC-CCceEEEEEE--------------EEhHHhhCcCCceEEEEEEE-------cCCCCcceEEEEEEEEEEe
Confidence            988642 3446899999              99999986544324444332       2344  4679999888874

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=92.62  E-value=0.44  Score=33.90  Aligned_cols=59  Identities=12%  Similarity=0.184  Sum_probs=41.5

Q ss_pred             eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC----CCCcccEEEEEeccccc
Q 047744           38 HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL----TDGGFVGETVFSYIHDQ   98 (151)
Q Consensus        38 ~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~----~~d~~iG~~~~~~~~~~   98 (151)
                      .+|.+. ..+.+|.|+|++...++... ....+|.|++++...-    ..+..+|-+.+.+++..
T Consensus        79 ~~S~V~-YHnk~P~w~EtIKi~LP~~~-~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~d  141 (220)
T 3l4c_A           79 YKSVIY-YQVKQPRWFETVKVAIPIED-VNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRYD  141 (220)
T ss_dssp             EECCCC-TTCSSCCCCEEEEEEECTTS-STTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCTT
T ss_pred             EEEEEE-EcCCCCCceEeEEEeeChhh-cCCeEEEEEEEEecccccccccCCeeEEEEEEcccCC
Confidence            455444 45789999999999998854 2678999999876421    12346899996666553

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=91.98  E-value=0.42  Score=41.69  Aligned_cols=97  Identities=14%  Similarity=0.121  Sum_probs=59.9

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEE--ECCee----eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIAR--CGNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~--~~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      ..++|+|..+.++...   ...+-||.+.  .+++.    ..|+. ...+.+|.|||-+.|.+...+......|.|+||+
T Consensus       353 ~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~-~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~  428 (1092)
T 2y3a_A          353 NPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSE-ISGKNDHIWNEQLEFDINICDLPRMARLCFAVYA  428 (1092)
T ss_dssp             SEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCC-CCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCC
T ss_pred             CCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceeccc-ccCCCCCccceeEEeCCccccCChhcEEEEEEEE
Confidence            5688999998887543   2356676643  34443    22322 2235789999999998877765577899999998


Q ss_pred             CCCC----------------------CCCcccEEEEEecccccccccee
Q 047744           78 TELL----------------------TDGGFVGETVFSYIHDQTSVNQC  104 (151)
Q Consensus        78 ~~~~----------------------~~d~~iG~~~~~~~~~~~~~~~~  104 (151)
                      ....                      +.+..+|.+.+.++.-..-+.++
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~~l~~G  477 (1092)
T 2y3a_A          429 VLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFKGQLRSG  477 (1092)
T ss_dssp             C------------------------------CCEEEEESBCTTCBBCCE
T ss_pred             ecCccccccccccccccccccccccccccceeEEEeeeeECCcCcccCC
Confidence            6311                      01237888887766544333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-12
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-07
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-06
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	7e-06
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-05
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	5e-05
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-04
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-04
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	5e-04
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	6e-04
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	0.002
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	0.003

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.0 bits (142), Expect = 1e-12
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 26/146 (17%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS 63
           G LEV+LV+A+G++  +       YV   C  Q+ +S  +   G    WNE FIF     
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 64  DWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIE 123
                T +K +I D ++ T+   VGE                  L  +  +         
Sbjct: 70  T----TELKAKIFDKDVGTEDDAVGEATIP--------------LEPVFVEG-------S 104

Query: 124 VKPAPYNVLLEDDTYKGQIVIGFKFI 149
           + P  YN +++D+ YKG+I +   F 
Sbjct: 105 IPPTAYN-VVKDEEYKGEIWVALSFK 129

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEH---RSKNSMVKGE-KAWWNEKFIFE 59
             L V+++ A  +  +++ G    YV     + +    + K  + K    A +NE F+F+
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 60  FPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
            P    +    ++F ++D+E  +    +G  V  
Sbjct: 75  IPCESLE-EISVEFLVLDSERGSRNEVIGRLVLG 107

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-06
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 1   MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSK----NSMVKGEKAWWNEKF 56
           +   +L V++ +A+ +   +  G    YV  +              ++       WNE F
Sbjct: 12  IDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 71

Query: 57  IFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
            F+   SD      +   I D +L +   F+G   F 
Sbjct: 72  RFQLKESDKD--RRLSVEIWDWDLTSRNDFMGSLSFG 106

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 7e-06
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 27/148 (18%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS 63
           GIL+V ++ A  +   +  G    + +   GN   ++   + K     WN+ F F     
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT-VYKNLNPEWNKVFTFPI--- 61

Query: 64  DWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIE 123
              +   ++  + D +      F+G+                  L  I   Q N   L  
Sbjct: 62  -KDIHDVLEVTVFDEDGDKPPDFLGKVAIP--------------LLSIRDGQPNCYVLKN 106

Query: 124 VKPAPYNVLLEDDTYKGQIVIGFKFIVN 151
                      +  +KG I +    I N
Sbjct: 107 KDL--------EQAFKGVIYLEMDLIYN 126

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.0 bits (90), Expect = 4e-05
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 2   KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMV----KGEKAWWNEKFI 57
             G+L V ++ A  +K  ++ G    YV A   ++  R K              +NE  +
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 58  FEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
           F+      +    +   ++D + +     +G     
Sbjct: 78  FDVAPESVE-NVGLSIAVVDYDCIGHNEVIGVCRVG 112

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 5e-05
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 2   KGGILEVLLVNAEGIKHTNIFGTPSYYV---IARCGNQEHRSKNSMVKG-EKAWWNEKFI 57
            G  L V ++ A+ +         + YV        + +++ +   VK   +  WN+ FI
Sbjct: 12  VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI 71

Query: 58  FEFPMSDWKLLTHIKFRIMDTELLTDGG--FVGETVFS 93
           +            ++  + D   + +    F+GE +  
Sbjct: 72  YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIE 109

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 4  GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS 63
            L++ +++A+  ++   +  PS YV      Q  +++          W +         
Sbjct: 6  SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSP-KWKQPLTVIVTPV 64

Query: 64 DWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
                 + FR+   + L     +G     
Sbjct: 65 SK-----LHFRVWSHQTLKSDVLLGTAALD 89

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEK--AWWNEKFIFEFP 61
             L V ++ A  +   ++ GT   YV       + +   + V  +     +NE+F F+ P
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 62  MSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
            S+      +   + D +  +    +GE    
Sbjct: 94  YSELG-GKTLVMAVYDFDRFSKHDIIGEFKVP 124

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 5e-04
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 2   KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEK----AWWNEKFI 57
           + G L V ++    +   +  G    +V         +      + +K      +NE+F 
Sbjct: 13  QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 72

Query: 58  FEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSY 94
           ++   SD    + +   + D ++     ++G      
Sbjct: 73  YDIKHSDLAKKS-LDISVWDYDIGKSNDYIGGCQLGI 108

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 6e-04
 Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 5   ILEVLLVNAEGI--KHTNIFGTPSYYVIARC-----GNQEHRSKNSMVKGEKAWWNEKFI 57
            L V +++ + +   + N        VI             ++      G    W+ +F 
Sbjct: 5   RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64

Query: 58  FEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQ 98
           FE  + D      ++F + D +  +   F+G++   +   +
Sbjct: 65  FEVTVPDLA---LVRFMVEDYDSSSKNDFIGQSTIPWNSLK 102

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 3/95 (3%)

Query: 2   KGGILEVLLVNAEGIKHTNIFG-TPSYYVIARCGNQEHRSKNSMVKGEKA--WWNEKFIF 58
           +     V +  A G+   +    T   Y+      ++     + V  +     ++E F F
Sbjct: 20  ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79

Query: 59  EFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
                       + F I+  +  +    +GE +  
Sbjct: 80  YGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIP 114

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.7 bits (76), Expect = 0.003
 Identities = 14/103 (13%), Positives = 37/103 (35%), Gaps = 13/103 (12%)

Query: 4   GILEVLLVNAEGIKHTNIFGTPSYYVIARC------------GNQEHRSKNSMVKG-EKA 50
           G L + ++ A  +   +  G    +V                 + E++ +   V+     
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 51  WWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFS 93
            WN+  I++    +  +   ++  + D +  +   F+GE +  
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLID 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.96
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.96
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.92
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.91
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.89
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.89
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.89
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.87
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.87
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.87
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.86
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.83
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.83
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.83
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.81
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.8
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.79
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.75
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.74
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.64
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.21

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1e-29  Score=170.12  Aligned_cols=124  Identities=32%  Similarity=0.561  Sum_probs=106.0

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      +.|+|+|+|++|++|+..+..+++||||+++++.+.++|++++.++.||.|||+|.|.+...    ...|.|+|||++.+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~----~~~L~v~V~d~d~~   83 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG----TTELKAKIFDKDVG   83 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS----CCEEEEEECCSSSC
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc----cceEEEEEEEecCC
Confidence            46899999999999999999999999999999999999988876789999999999999863    46799999999999


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEeC
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN  151 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~~  151 (151)
                      ++|++||++.              |+|.++...+..       .+.++.+. .+++.+|+|.++++|.|.
T Consensus        84 ~~d~~iG~~~--------------i~L~~l~~~~~~-------~~~~~~l~-~~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          84 TEDDAVGEAT--------------IPLEPVFVEGSI-------PPTAYNVV-KDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTTCCSEEEE--------------EESHHHHHHSEE-------EEEEEEEE-ETTEEEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEE--------------EEhHHhcccCCc-------CcEEEEec-CCCccCEEEEEEEEEEeC
Confidence            9999999999              999998755433       23333333 467789999999999984

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-28  Score=162.39  Aligned_cols=123  Identities=20%  Similarity=0.320  Sum_probs=104.7

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL   81 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~   81 (151)
                      +.|.|+|+|++|++|+..+..|.+||||++++++++++|++++ ++.||.|||+|.|.+...    ...|.|+|||++.+
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~v~~~----~~~L~i~V~d~~~~   78 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDI----HDVLEVTVFDEDGD   78 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCS-SCSSCCCCEEEEEEESCT----TCEEEEEEEEEETT
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeC-CceeEEEEEEEEEEEecc----CceeEEEEEEccCC
Confidence            4699999999999999999999999999999999999998875 689999999999998763    46899999999999


Q ss_pred             CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEeC
Q 047744           82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN  151 (151)
Q Consensus        82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~~  151 (151)
                      ++|++||++.              ++++++....   ..|+.|....     .++..+|+|.+++.|+.|
T Consensus        79 ~~d~~lG~~~--------------i~l~~l~~~~---~~~~~l~~~~-----~~~~~~G~i~l~~~~i~N  126 (126)
T d2ep6a1          79 KPPDFLGKVA--------------IPLLSIRDGQ---PNCYVLKNKD-----LEQAFKGVIYLEMDLIYN  126 (126)
T ss_dssp             EEEEECCBCE--------------EEGGGCCSSC---CEECCCBCSC-----TTSCCSSEEEEEEEEEEC
T ss_pred             cCcceEEEEE--------------EEHHHCCCCC---ceEEEccccC-----CCCceeEEEEEEEEEEEC
Confidence            9999999999              9998885432   3455554332     355678999999999998

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.92  E-value=1.8e-24  Score=144.43  Aligned_cols=120  Identities=13%  Similarity=0.224  Sum_probs=96.6

Q ss_pred             CCCcEEEEEEEEeeCCCCCC-----------CCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccc
Q 047744            1 MKGGILEVLLVNAEGIKHTN-----------IFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLT   69 (151)
Q Consensus         1 m~~g~L~V~v~~a~~L~~~~-----------~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~   69 (151)
                      |..|.|+|+|++|++|++.+           ..+.+||||+++++++..+++.++.++.||.|||+|.|.++.     .+
T Consensus         3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-----~~   77 (136)
T d1gmia_           3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-----GR   77 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-----EC
T ss_pred             cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-----CC
Confidence            46799999999999998753           345689999999998775433444578999999999999874     36


Q ss_pred             eEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCC-cceeeeeeccccceecCCCccceEEEEEEEE
Q 047744           70 HIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-DKELIEVKPAPYNVLLEDDTYKGQIVIGFKF  148 (151)
Q Consensus        70 ~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~  148 (151)
                      .|.|+|||++.+++|++||.+.              ++++++..++.. ...|+.|+            .+|+|++.+.|
T Consensus        78 ~l~i~V~d~~~~~~d~~iG~~~--------------i~l~~l~~~~~~~~~~w~~L~------------p~G~v~l~v~~  131 (136)
T d1gmia_          78 KIELAVFHDAPIGYDDFVANCT--------------IQFEELLQNGSRHFEDWIDLE------------PEGKVYVIIDL  131 (136)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEE--------------EEHHHHTSTTCSEEEEEEECB------------SSCEEEEEEEE
T ss_pred             ceEEEEEEecCCCCceeEEEEE--------------EEHHHhhhcCCcceeEEEeCC------------CCcEEEEEEEE
Confidence            8999999999999999999999              999999866543 13455553            36999999998


Q ss_pred             EeC
Q 047744          149 IVN  151 (151)
Q Consensus       149 ~~~  151 (151)
                      .++
T Consensus       132 ~~~  134 (136)
T d1gmia_         132 SGS  134 (136)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            763

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-24  Score=142.36  Aligned_cols=124  Identities=12%  Similarity=0.220  Sum_probs=95.4

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT   82 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~   82 (151)
                      .+.|.|+|++|++++..+..+++||||++.++++.++|++.+ ++.||.|||.|.|.+..     ...|.|+|||++.++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~-----~~~l~~~V~d~d~~~   78 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTP-----VSKLHFRVWSHQTLK   78 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCS-SCSSCEEEEEEEEEECT-----TCEEEEEEEECCSSS
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEE-ecccEEEcceEEEEEEe-----cceeEEEEEEccCCC
Confidence            378999999999999988888999999999999999998765 68999999999999865     357999999999999


Q ss_pred             CCcccEEEEEeccccccccceeeeecCcccccCCC--cceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744           83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN--DKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI  149 (151)
Q Consensus        83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~  149 (151)
                      +|++||++.              ++|.++......  ...+..+....   ........|+|.|.+.++
T Consensus        79 ~d~~iG~~~--------------i~L~~l~~~~~~~~~~~~~~l~l~~---~~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          79 SDVLLGTAA--------------LDIYETLKSNNMKLEEVVVTLQLGG---DKEPTETIGDLSICLDGL  130 (133)
T ss_dssp             CCEEEEEEE--------------EEHHHHHHHTTTEESSEEEEEEEEE---SSCTTSEEEEEEEEEESE
T ss_pred             CCceEEEEE--------------EEHHHhhhhcCCceeeEEEEEecCC---CCCCceEEEEEEEEEeeE
Confidence            999999999              999888643221  01222221110   012334669999988765

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.2e-23  Score=135.28  Aligned_cols=118  Identities=13%  Similarity=0.241  Sum_probs=93.5

Q ss_pred             CcEEEEEEEEeeCCCCC---CCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHT---NIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      .+.|+|+|++|++|+..   +..|.+||||++.+++   ++.+|++.. ++.||.|||+|.|.+...   ....|.|+||
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~f~i~~~---~~~~L~v~V~   77 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFEFILDPN---QENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCT-TCSSCEEEEEEEEEECTT---SCCEEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecC-CCccceeceeeeecccCc---ccCcEEEEEE
Confidence            57899999999999864   3457899999999865   456777654 689999999999998764   3467999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                      |++.. +|++||++.              ++|+++...... ..|+.|.+          ...|+|.+++.+.|
T Consensus        78 d~d~~-~d~~lG~~~--------------i~L~~l~~~~~~-~~~~~L~~----------~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          78 DANYV-MDETLGTAT--------------FTVSSMKVGEKK-EVPFIFNQ----------VTEMVLEMSLEVAS  125 (126)
T ss_dssp             ECCSS-CCEEEEEEE--------------EEGGGSCTTCEE-EEEEEETT----------TEEEEEEEEEECCC
T ss_pred             ECCCC-CCCeEEEEE--------------EEHHHccCCCeE-EEEEEccC----------CCeEEEEEEEEEEe
Confidence            99864 578999999              999988654444 56666632          34699999998865

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=4e-23  Score=137.03  Aligned_cols=107  Identities=18%  Similarity=0.276  Sum_probs=88.6

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE-----CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARC-----GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+     ...+++|++++ ++.||.|||.|.|.+....  ....|.|+||
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~--~~~~L~i~V~   89 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-CSLNPEWNETFRFQLKESD--KDRRLSVEIW   89 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCS-SCSSCEEEEEEEEECCSGG--GGCEEEEEEE
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeec-CCCCCccceEEEEEeEccc--cCCEEeEEEE
Confidence            35789999999999999998899999999998     34567787765 6899999999999887643  4568999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      |++.+++|++||.+.              +++.++...+ . ++|+.|.+.
T Consensus        90 d~d~~~~d~~iG~~~--------------i~l~~l~~~~-~-~~W~~L~~~  124 (132)
T d1a25a_          90 DWDLTSRNDFMGSLS--------------FGISELQKAG-V-DGWFKLLSQ  124 (132)
T ss_dssp             ECCSSSCCEEEEEEE--------------EEHHHHTTCC-E-EEEEECBCH
T ss_pred             ecCCCCCCcEeEEEE--------------EeHHHcCCCC-C-CeEEECCCC
Confidence            999999999999999              8888875433 2 578777543

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=4.2e-22  Score=131.42  Aligned_cols=118  Identities=17%  Similarity=0.209  Sum_probs=90.1

Q ss_pred             cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744            4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD   83 (151)
Q Consensus         4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~   83 (151)
                      +.|.|+|.+|++|+..+   +.||||++++++++.+|.+++  +.||.|||.|.|.+...    ...|.|+|||++.. .
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k--~~nP~Wne~f~f~v~~~----~~~L~v~V~d~~~~-~   71 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR--GSQPSWEQDFMFEINRL----DLGLTVEVWNKGLI-W   71 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE--SSSCEEEEEEEEEECCC----SSEEEEEEEECCSS-C
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec--CCCCeEEEEEEEeeccc----cceEEEEEEeCCCc-C
Confidence            68999999999999876   579999999999988887775  56999999999999874    46899999999876 5


Q ss_pred             CcccEEEEEeccccccccceeeeecCcccccCCC-cceeeeeeccccceecCCCcc-------ceEEEEEEEE
Q 047744           84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-DKELIEVKPAPYNVLLEDDTY-------KGQIVIGFKF  148 (151)
Q Consensus        84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~-------~G~i~~~~~~  148 (151)
                      |++||++.              |+|+++...... ...|+.|.+....   ..|+.       ...|.+.++|
T Consensus        72 d~~lG~~~--------------I~L~~l~~~~~~~~~~W~~L~~~~~~---~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          72 DTMVGTVW--------------IPLRTIRQSNEEGPGEWLTLDSQAIM---ADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEE--------------EEGGGSCBCSSCCCCEEEECBC-------------CCSCCCCCEEEEEEEE
T ss_pred             CcceEEEE--------------EEehhhccCCCCCCCeeEECCccccC---CCCEEEeeecCCCcEEEEEEEc
Confidence            89999999              999998744322 2578888654321   23332       3577777776

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.2e-21  Score=128.40  Aligned_cols=117  Identities=14%  Similarity=0.247  Sum_probs=86.3

Q ss_pred             cEEEEEEEEeeCCCC--CCCCCCCCEEEEEEE-----CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            4 GILEVLLVNAEGIKH--TNIFGTPSYYVIARC-----GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         4 g~L~V~v~~a~~L~~--~~~~~~~dpyv~v~~-----~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..|.|.|++|++|+.  .+..+.+||||++++     +.++.+|+++++++.||.|||+|.|.+...   ....|.|+||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~---~~~~L~~~V~   80 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP---DLALVRFMVE   80 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG---GGCEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc---hhceEEEEEE
Confidence            579999999999964  445678999999998     346778888776678999999999988764   3467999999


Q ss_pred             ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCc--cceEEEEEEEE
Q 047744           77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT--YKGQIVIGFKF  148 (151)
Q Consensus        77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~G~i~~~~~~  148 (151)
                      |++.+++|++||++.              ++|..+.. +   ..|+.|       ....|.  ..+.|.+.+.+
T Consensus        81 D~d~~~~d~~iG~~~--------------i~l~~l~~-g---~~~~~L-------~~~~g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          81 DYDSSSKNDFIGQST--------------IPWNSLKQ-G---YRHVHL-------LSKNGDQHPSATLFVKISI  129 (131)
T ss_dssp             ECCTTTCCEEEEEEE--------------EEGGGBCC-E---EEEEEE-------ECTTSCEEEEEEEEEEEEE
T ss_pred             EecCCCCCcEEEEEE--------------EEEeccCC-C---CEEEEC-------CCCCcCCCCCCEEEEEEEE
Confidence            999999999999999              99888742 1   123333       223343  34677777765

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.8e-22  Score=134.59  Aligned_cols=108  Identities=18%  Similarity=0.231  Sum_probs=88.7

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE---CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARC---GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..+.|+|+|++|++|+..+..+.+||||++.+   ..+..+|++.+ ++.||.|||+|.|.+...+ +....|.|+|||+
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~-~t~~P~wne~f~f~i~~~~-l~~~~L~i~V~d~  109 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSE-LGGKTLVMAVYDF  109 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCT-TCSSCEEEEEEEECCCHHH-HTTCEEEEEEEEC
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEec-cccCcceeeeeEEEEEeec-cCCceEEEEEEEc
Confidence            35789999999999999998899999999998   34556777664 6899999999999876532 2356899999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP  126 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~  126 (151)
                      +.++++++||++.              ++|.++...... ..|+.|+.
T Consensus       110 d~~~~~~~iG~~~--------------i~L~~~~~~~~~-~~W~~L~s  142 (143)
T d1rsya_         110 DRFSKHDIIGEFK--------------VPMNTVDFGHVT-EEWRDLQS  142 (143)
T ss_dssp             CSSSCCEEEEEEE--------------EEGGGCCCSSCE-EEEEECBC
T ss_pred             CCCCCCcEEEEEE--------------EEchhccCCCCC-ccEEeCCC
Confidence            9999999999999              999888655544 67877753

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.4e-23  Score=140.66  Aligned_cols=110  Identities=15%  Similarity=0.200  Sum_probs=88.6

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe--------------eeEEeeeeCCCCCCeeceEEEEEEeCCCcccc
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ--------------EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLL   68 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~--------------~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~   68 (151)
                      .|.|.|.|++|++|+..+..+.+||||++.+...              +++|++++ ++.||.|||.|.|.....+.+..
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~~   95 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHHHHTT
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCc-CCCCceeEEEEEEeeecccccCC
Confidence            4789999999999999999999999999998421              24566655 57899999999996433222245


Q ss_pred             ceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccc
Q 047744           69 THIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAP  128 (151)
Q Consensus        69 ~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~  128 (151)
                      ..|.|+|||++.+++|++||++.              ++|.++...... ..|+.|.+++
T Consensus        96 ~~L~i~V~d~d~~~~~~~lG~~~--------------i~L~~l~~~~~~-~~W~~L~~~~  140 (142)
T d1rh8a_          96 KTLEVTVWDYDRFSSNDFLGEVL--------------IDLSSTSHLDNT-PRWYPLKEQT  140 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEE--------------EETTSCGGGTTC-CEEEECBCCC
T ss_pred             CEEEEEEEEecCCCCCeeeEEEE--------------EEhHHcCCCCCc-eEEEECcCcC
Confidence            68999999999999999999999              999998766555 7888887663

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.4e-21  Score=129.13  Aligned_cols=88  Identities=19%  Similarity=0.303  Sum_probs=75.9

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.   .++++|++.+ ++.||.|||+|.|.++..+ +....|.|+|||+
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~-~~~~~L~v~V~d~   93 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSVPLAE-LAQRKLHFSVYDF   93 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCC-SCSSCEEEEEEEEECCGGG-GSSCCCEEEEEEC
T ss_pred             CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEc-CCCCeeeeeEEEEEEchHH-cCCCeEEEEEEEc
Confidence            468999999999999999988999999999983   3457787765 6899999999999987643 2456799999999


Q ss_pred             CCCCCCcccEEEE
Q 047744           79 ELLTDGGFVGETV   91 (151)
Q Consensus        79 ~~~~~d~~iG~~~   91 (151)
                      +.+++|++||++.
T Consensus        94 ~~~~~d~~iG~~~  106 (130)
T d1dqva1          94 DRFSRHDLIGQVV  106 (130)
T ss_dssp             CSSSCCCEEEEEE
T ss_pred             CCCCCCceEEEEE
Confidence            9999999999999

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-20  Score=123.14  Aligned_cols=105  Identities=18%  Similarity=0.229  Sum_probs=79.7

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEE-EeCCCccccceEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFE-FPMSDWKLLTHIKFRI   75 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~-v~~~~~~~~~~L~v~v   75 (151)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.     ..+++|++.+ ++.||.|||+|.|. +.. +.+....|.|+|
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~-~t~~P~wne~f~f~~~~~-~~l~~~~L~i~v   89 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEPKWNQTFIYSPVHR-REFRERMLEITL   89 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCS-SBSSCEEEEEEEECSCCG-GGGGGCEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEc-CCCCCEEccEEEEeeeCh-hhcCCCEEEEEE
Confidence            467899999999999998888899999999882     2346777765 68999999999996 443 323566899999


Q ss_pred             EECCCCC--CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744           76 MDTELLT--DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV  124 (151)
Q Consensus        76 ~d~~~~~--~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l  124 (151)
                      ||.+.++  ++++||++.              ++++++..++.  .+|+.|
T Consensus        90 ~d~~~~~~~~~~~iG~~~--------------i~l~~~~~~~~--~~Wy~L  124 (125)
T d2bwqa1          90 WDQARVREEESEFLGEIL--------------IELETALLDDE--PHWYKL  124 (125)
T ss_dssp             EEC-------CEEEEEEE--------------EEGGGCCCSSC--EEEEEC
T ss_pred             EECCCCCCCCCeeEEEEE--------------EEchhcCCCCC--CEEEeC
Confidence            9999764  456999999              99888865443  467665

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.2e-20  Score=122.35  Aligned_cols=96  Identities=16%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCC-CCEEEEEEE---CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744            3 GGILEVLLVNAEGIKHTNIFGT-PSYYVIARC---GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT   78 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~-~dpyv~v~~---~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~   78 (151)
                      .+.|.|+|++|++|+..+..+. +||||++.+   ..+.++|++.+ ++.||.|||+|.|.......+....|.|+|||+
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~   99 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCS-SCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEe-CCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence            5789999999999998876654 799999998   44567787765 689999999999963332323567899999999


Q ss_pred             CCCCCCcccEEEEEeccccccccceeeeecCcccc
Q 047744           79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT  113 (151)
Q Consensus        79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~  113 (151)
                      +.+++|++||++.              ++|.++..
T Consensus       100 d~~~~~~~iG~~~--------------i~L~~~~~  120 (138)
T d1ugka_         100 DRFSRDDIIGEVL--------------IPLSGIEL  120 (138)
T ss_dssp             CSSCCCCCCEEEE--------------EECTTCCC
T ss_pred             CCCCCCcEEEEEE--------------EEcccccC
Confidence            9999999999999              99988853

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.9e-20  Score=123.33  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=86.0

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      ..+.|.|+|++|++|..   .+.+||||++.+.+    ..++|++.+ ++.||.|||.|.|.+...+ +....|.|+|||
T Consensus        24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~-~~~~P~wne~f~f~v~~~~-l~~~~L~~~V~d   98 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKK-RQLHTTWEEGLVLPLAEEE-LPTATLTLTLRT   98 (138)
T ss_dssp             TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCC-CCSSEECSSCEEEECCTTS-STTCEEEEEEEE
T ss_pred             CCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEEC-CCCCceEeeeEEEEeeehh-ccceEEEEEEee
Confidence            35789999999999953   46789999998842    235666654 6899999999999987644 356789999999


Q ss_pred             CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744           78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA  127 (151)
Q Consensus        78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~  127 (151)
                      ++.++++++||++.              |+|.++...... ..|+.|.|.
T Consensus        99 ~~~~~~~~~iG~~~--------------i~L~~l~~~~~~-~~W~~L~~~  133 (138)
T d1wfma_          99 CDRFSRHSVAGELR--------------LGLDGTSVPLGA-AQWGELKTS  133 (138)
T ss_dssp             CCSSCTTSCSEEEE--------------EESSSSSSCTTC-CEEEECCCC
T ss_pred             ecccccceeeeEEE--------------EEhHHccCCCCc-eEeEeCCCC
Confidence            99999999999999              999998655444 789888765

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=2.3e-19  Score=121.98  Aligned_cols=88  Identities=18%  Similarity=0.374  Sum_probs=74.5

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|.|++|++|+..+..+.+||||++.+..     ..++|++.+ ++.||+|||+|.|.++..+ +....|.|+||
T Consensus        23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~F~v~~~~-l~~~~l~i~v~  100 (157)
T d1uowa_          23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQ-IQKVQVVVTVL  100 (157)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEEEECCGGG-GGGCEEEEEEE
T ss_pred             CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceeccccc-CCCCcccCCeEEEEecHHH-cCccEEEEEEc
Confidence            4689999999999999988889999999998732     234566654 6899999999999987754 24568999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++.++++++||++.
T Consensus       101 d~~~~~~~~~iG~~~  115 (157)
T d1uowa_         101 DYDKIGKNDAIGKVF  115 (157)
T ss_dssp             ECCSSSCCCEEEEEE
T ss_pred             ccCCCCCCceeEEEE
Confidence            999999999999999

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3.1e-19  Score=118.48  Aligned_cols=88  Identities=16%  Similarity=0.253  Sum_probs=75.4

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..+.|.|.|++|++|+..+..+.+||||++.+.     ..+++|++++ ++.||.|||+|.|.++..+ +....|.|+||
T Consensus        13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~-l~~~~l~v~v~   90 (137)
T d2cm5a1          13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK-KTLNPEFNEEFFYDIKHSD-LAKKSLDISVW   90 (137)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCC-SCSSCEEEEEEEEECCGGG-GGGCEEEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEc-CCCCCccceEEEEEeEHHH-ccccEEEEEee
Confidence            468999999999999998888899999999873     2346777765 6899999999999987644 25678999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++.++++++||++.
T Consensus        91 ~~~~~~~~~~iG~~~  105 (137)
T d2cm5a1          91 DYDIGKSNDYIGGCQ  105 (137)
T ss_dssp             ECCSSSCCEEEEEEE
T ss_pred             eCCCCCCCCEEEEEE
Confidence            999999999999999

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=3.4e-19  Score=118.61  Aligned_cols=87  Identities=20%  Similarity=0.360  Sum_probs=68.2

Q ss_pred             CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCe---eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744            3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQ---EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD   77 (151)
Q Consensus         3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~---~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d   77 (151)
                      .+.|.|+|++|++|+..+..+.+||||++.+  +..   +++|++.+ ++.||.|||+|.|.++..+ +....|.|+|||
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~-~t~~P~wne~f~F~v~~~~-~~~~~l~i~v~d   91 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDIPCES-LEEISVEFLVLD   91 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCC-SCSSEEEEEEEEEECCSSS-STTEEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeEC-CCCCCeECcEEEEEecHHH-hCccEEEEEEEe
Confidence            5789999999999999998889999999987  222   34566554 6899999999999987644 255679999999


Q ss_pred             CCCCCCCcccEEEE
Q 047744           78 TELLTDGGFVGETV   91 (151)
Q Consensus        78 ~~~~~~d~~iG~~~   91 (151)
                      ++.++++++||++.
T Consensus        92 ~~~~~~~~~iG~~~  105 (138)
T d1w15a_          92 SERGSRNEVIGRLV  105 (138)
T ss_dssp             CCTTSCCEEEEEEE
T ss_pred             CCCCCCCCEEEEEE
Confidence            99999999999999

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=3.8e-19  Score=119.28  Aligned_cols=88  Identities=16%  Similarity=0.284  Sum_probs=74.4

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744            2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM   76 (151)
Q Consensus         2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~   76 (151)
                      ..|.|.|+|++|++|+..+..+.+||||++.+...     +++|++.+ ++.||.|||.|.|.++..+ +....|.|+||
T Consensus        18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~~P~wne~f~F~v~~~~-~~~~~l~v~v~   95 (145)
T d1dqva2          18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALVFDVAPES-VENVGLSIAVV   95 (145)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCC-SCSSCEEEECCCCCCCSGG-GGSCCCCCEEE
T ss_pred             CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEe-CCCCceecceEEEEEehhh-cCCCEEEEEEE
Confidence            35899999999999999888888999999998532     35676665 6899999999999887633 24567999999


Q ss_pred             ECCCCCCCcccEEEE
Q 047744           77 DTELLTDGGFVGETV   91 (151)
Q Consensus        77 d~~~~~~d~~iG~~~   91 (151)
                      |++.++++++||++.
T Consensus        96 d~~~~~~~~~iG~~~  110 (145)
T d1dqva2          96 DYDCIGHNEVIGVCR  110 (145)
T ss_dssp             ECCSSSCCEEEEECC
T ss_pred             ecCCCCCCcEEEEEE
Confidence            999999999999999

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=9e-18  Score=109.69  Aligned_cols=108  Identities=6%  Similarity=0.083  Sum_probs=76.2

Q ss_pred             EEEEE--EEeeCCCCCCCCCCCCEEEEEEECCe----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744            6 LEVLL--VNAEGIKHTNIFGTPSYYVIARCGNQ----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE   79 (151)
Q Consensus         6 L~V~v--~~a~~L~~~~~~~~~dpyv~v~~~~~----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~   79 (151)
                      |+|.+  +.+..++  ...+.+||||++.+.+.    +.+++.++.+++||+|||+|.|.+..     .+.|.|.|||++
T Consensus         5 ~~~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-----~~~l~i~V~d~d   77 (123)
T d1bdya_           5 LRISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-----GRVIQIVLMRAA   77 (123)
T ss_dssp             EEEEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-----TCEEEEEEEEET
T ss_pred             EEEEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-----ccEEEEEEEEcc
Confidence            44444  4444443  44678999999998543    22334455679999999999998875     367999999976


Q ss_pred             CCCCCcccEEEEEeccccccccceeeeecCcccccC----CCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744           80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ----SNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV  150 (151)
Q Consensus        80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~  150 (151)
                          ++++|.+.              +.+.++....    ...+.|+.|+            +.|+|+++++|..
T Consensus        78 ----d~~~g~~~--------------i~l~~l~~~~~~~~~~~~~W~~L~------------~~Gkl~l~v~~f~  122 (123)
T d1bdya_          78 ----EDPMSEVT--------------VGVSVLAERCKKNNGKAEFWLDLQ------------PQAKVLMCVQYFL  122 (123)
T ss_dssp             ----TEEEEEEE--------------EEHHHHHHHHHTTTTEEEEEEECB------------SSCEEEEEEEEEE
T ss_pred             ----ccccCccE--------------EehhheeeccccCCCcccEEEeCC------------CCEEEEEEEEEec
Confidence                68999999              8888875421    1113455443            4699999999974

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.8e-15  Score=95.98  Aligned_cols=83  Identities=17%  Similarity=0.356  Sum_probs=62.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC------eeeEEee-eeCCCCCCeeceE-EEE-EEeCCCccccceEEEEE
Q 047744            5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN------QEHRSKN-SMVKGEKAWWNEK-FIF-EFPMSDWKLLTHIKFRI   75 (151)
Q Consensus         5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~-~~~~~~nP~wne~-f~f-~v~~~~~~~~~~L~v~v   75 (151)
                      +|.|+|++|++|+...    .||||++++.+      .+.+|++ +++++.||.|||. |.| .+...   ....|.|.|
T Consensus         2 tl~V~Visaq~L~~~~----~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~---~l~~L~f~V   74 (122)
T d2zkmx2           2 TLSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP---ELASLRVAV   74 (122)
T ss_dssp             EEEEEEEEEESCCSSC----CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG---GGCEEEEEE
T ss_pred             EEEEEEEEeeCCCCCC----CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCC---cccEEEEEE
Confidence            7899999999998653    79999999832      2334443 3467899999976 444 34432   235899999


Q ss_pred             EECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744           76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII  112 (151)
Q Consensus        76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~  112 (151)
                      ||++    |++||++.              +|++.+.
T Consensus        75 ~D~d----~~~lG~~~--------------ipl~~l~   93 (122)
T d2zkmx2          75 MEEG----NKFLGHRI--------------IPINALN   93 (122)
T ss_dssp             EETT----TEEEEEEE--------------EEGGGBC
T ss_pred             ECCC----CCEEEEEE--------------EEcccCc
Confidence            9975    78999999              9988774