Citrus Sinensis ID: 047755

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MGGSSFKWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVNEFFSRDN
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHEEHHHccccccEEEcccHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccccHcHHHHHHHHHHHHHHHHHHHHHHHccccccEEcHHHHHccccccHHHHHHHHHHHHHHHHccccccccHcHHHHccccc
Coil and Loop (DISEMBL)
mggssfkwvrpevyplFGALGAAVGICAMQLVrnawtnpevRLTKANrtagvlenfdegyryKENALRrfvrdkppqimpsvneffsrdn
Flexible Loop (DISEMBL)
mggssfkwvrPEVYPLFGALGAAVGICAMQLVRNawtnpevrltkanrtagvlenfdegyryKENALrrfvrdkppqimpsvneffsrdn
Low Complexity Region (SEG)
MGGSSFKWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVNEFFSRDN
Disordered region (IsUnstruct)
*****FKWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFV*******************
Disordered Region (DISOPRED)
*****FK*VRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVNEFF****
Disordered Region (DISEMBL)
MGGSSFKWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVNEFFSRDN
Disordered Region (DISPRO)
*****FKWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVNEFFS***
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGSSFKWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVNEFFSRDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
225425886	93	PREDICTED: uncharacterized protein LOC10	0.933	0.903	0.738	5e-30
224100067	92	predicted protein [Populus trichocarpa]	0.933	0.913	0.690	3e-28
356540179	89	PREDICTED: uncharacterized protein LOC10	0.9	0.910	0.691	8e-28
255547890	93	conserved hypothetical protein [Ricinus	0.9	0.870	0.703	9e-28
356567336	89	PREDICTED: uncharacterized protein LOC10	0.9	0.910	0.691	1e-27
449450387	89	PREDICTED: uncharacterized protein LOC10	0.977	0.988	0.625	2e-27
255630085	89	unknown [Glycine max]	0.9	0.910	0.679	2e-27
255632574	89	unknown [Glycine max]	0.9	0.910	0.679	3e-27
255540809	88	conserved hypothetical protein [Ricinus	0.933	0.954	0.666	4e-27
224119204	90	predicted protein [Populus trichocarpa]	0.944	0.944	0.643	3e-26

>gi|225425886|ref|XP_002270661.1| PREDICTED: uncharacterized protein LOC100259604 [Vitis vinifera] gi|297738347|emb|CBI27548.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 72/84 (85%)

Query: 7  KWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENA 66
          +W+RPEVYPLF A+G AVGIC MQLVRN  TNPEVR+TK NRTAGVLENF+EG RY E+ 
Sbjct: 8  RWLRPEVYPLFAAVGVAVGICGMQLVRNICTNPEVRVTKQNRTAGVLENFEEGERYAEHR 67

Query: 67 LRRFVRDKPPQIMPSVNEFFSRDN 90
          LR+FVR+K PQIMPS+N+FFS  N
Sbjct: 68 LRKFVRNKEPQIMPSINKFFSDPN 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100067|ref|XP_002311729.1| predicted protein [Populus trichocarpa] gi|222851549|gb|EEE89096.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 71/84 (84%)

Query: 4  SSFKWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYK 63
          +S +W+RPEV+PLF ++G AVGICAMQLVRN  TNPEVR+TK NR AGVL+NF EG +Y 
Sbjct: 2  ASSRWIRPEVFPLFASVGVAVGICAMQLVRNICTNPEVRVTKENRAAGVLDNFKEGEKYA 61

Query: 64 ENALRRFVRDKPPQIMPSVNEFFS 87
          E+ LR+FVR+K PQIMPS+N FFS
Sbjct: 62 EHGLRKFVRNKTPQIMPSINGFFS 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540179|ref|XP_003538567.1| PREDICTED: uncharacterized protein LOC100527541 [Glycine max]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 69/81 (85%)

Query: 7  KWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENA 66
          +W++PEVYPLF ++G AVGIC MQLVRN  TNPEVR+TK NRTAG+LENF EG +Y +++
Sbjct: 5  RWLKPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKQNRTAGILENFAEGEKYSQHS 64

Query: 67 LRRFVRDKPPQIMPSVNEFFS 87
          LR++VR K PQIMPSVN FFS
Sbjct: 65 LRKYVRGKQPQIMPSVNNFFS 85

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547890|ref|XP_002515002.1| conserved hypothetical protein [Ricinus communis] gi|223546053|gb|EEF47556.1| conserved hypothetical protein [Ricinus communis]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 69/81 (85%)

Query: 7  KWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENA 66
          +W+RPEV+PLF ++G AVGIC MQLVRN  TNPEVR+TK NR AGVL+NF EG RYKE+ 
Sbjct: 5  RWIRPEVFPLFASVGVAVGICGMQLVRNICTNPEVRVTKENRAAGVLDNFAEGERYKEHG 64

Query: 67 LRRFVRDKPPQIMPSVNEFFS 87
          LR+FVR++ PQIMPS+N FFS
Sbjct: 65 LRKFVRNRSPQIMPSLNGFFS 85

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567336|ref|XP_003551877.1| PREDICTED: uncharacterized protein LOC100500344 [Glycine max]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 68/81 (83%)

Query: 7  KWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENA 66
          +W++PEVYPLF A+G AVGIC MQLVRN  TNPEVR+TK NR AG+LENF EG +Y +++
Sbjct: 5  RWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHS 64

Query: 67 LRRFVRDKPPQIMPSVNEFFS 87
          LR++VR K PQIMPSVN FFS
Sbjct: 65 LRKYVRGKQPQIMPSVNNFFS 85

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450387|ref|XP_004142944.1| PREDICTED: uncharacterized protein LOC101222643 [Cucumis sativus] gi|449494473|ref|XP_004159555.1| PREDICTED: uncharacterized protein LOC101224466 [Cucumis sativus]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 72/88 (81%)

Query: 3  GSSFKWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRY 62
           ++ +W++PEVYPLF ++G AVGICAMQLVRN  TNPEVR+ K  R AGVL+NF+EG +Y
Sbjct: 2  ATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEKY 61

Query: 63 KENALRRFVRDKPPQIMPSVNEFFSRDN 90
           E+ LR+F+R +PPQIMPS+N+FFS  N
Sbjct: 62 AEHGLRKFLRTRPPQIMPSINKFFSDPN 89

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630085|gb|ACU15396.1| unknown [Glycine max]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 68/81 (83%)

Query: 7  KWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENA 66
          +W++PEVYPLF A+G AVGIC MQLVRN  TNPEVR+TK NR AG+LENF EG +Y +++
Sbjct: 5  RWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHS 64

Query: 67 LRRFVRDKPPQIMPSVNEFFS 87
          LR++VR K PQ+MPSVN FFS
Sbjct: 65 LRKYVRGKQPQVMPSVNNFFS 85

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255632574|gb|ACU16637.1| unknown [Glycine max]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 68/81 (83%)

Query: 7  KWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENA 66
          +W++PEVYPL  ++G AVGIC MQLVRN  TNPEVR+TK NRTAG+LENF EG +Y +++
Sbjct: 5  RWLKPEVYPLIASVGVAVGICGMQLVRNITTNPEVRVTKQNRTAGILENFAEGEKYSQHS 64

Query: 67 LRRFVRDKPPQIMPSVNEFFS 87
          LR++VR K PQIMPSVN FFS
Sbjct: 65 LRKYVRGKQPQIMPSVNNFFS 85

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540809|ref|XP_002511469.1| conserved hypothetical protein [Ricinus communis] gi|223550584|gb|EEF52071.1| conserved hypothetical protein [Ricinus communis]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 67/84 (79%)

Query: 7  KWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENA 66
          +W+RPEVYPLF A+G AVGIC+ QLVRN   NPEVR+ K NR AGVLENF EG +Y EN 
Sbjct: 5  RWIRPEVYPLFAAMGVAVGICSFQLVRNICINPEVRVNKQNRAAGVLENFKEGEKYSENF 64

Query: 67 LRRFVRDKPPQIMPSVNEFFSRDN 90
          LR+FVR+K P+IMPS+N FF+  N
Sbjct: 65 LRKFVRNKTPEIMPSINRFFTEPN 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119204|ref|XP_002318014.1| predicted protein [Populus trichocarpa] gi|118484665|gb|ABK94203.1| unknown [Populus trichocarpa] gi|222858687|gb|EEE96234.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 68/87 (78%), Gaps = 2/87 (2%)

Query: 1  MGGSSFKWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGY 60
          MGGS  +W+RPEVYPLF A+G AVGIC  QL RN   NPEVR+TK NR AGVL+NF EG 
Sbjct: 1  MGGS--RWLRPEVYPLFAAVGVAVGICGFQLARNICINPEVRVTKQNRAAGVLDNFSEGE 58

Query: 61 RYKENALRRFVRDKPPQIMPSVNEFFS 87
          +Y E+ LR+ VR++ PQIMPS+N FF+
Sbjct: 59 KYSEHGLRKLVRNRSPQIMPSINNFFT 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2100484	88	AT3G48140 "AT3G48140" [Arabido	0.9	0.920	0.641	1.8e-25
TAIR|locus:2829357	87	AT3G29970 "AT3G29970" [Arabido	0.933	0.965	0.488	1e-20

TAIR|locus:2100484 AT3G48140 "AT3G48140" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query:     7 KWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENA 66
             +W+RPEVYPLF A G AVGICA  L+RN   NPEVR TK NR AG+L+N  EG +YKEN 
Sbjct:     4 RWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENF 63

Query:    67 LRRFVRDKPPQIMPSVNEFFS 87
             LR+FVR+K P+IMP +N+FF+
Sbjct:    64 LRKFVRNKKPEIMPGLNKFFT 84

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0010150 "leaf senescence" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2829357 AT3G29970 "AT3G29970" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 41/84 (48%), Positives = 61/84 (72%)

Query:     7 KWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENA 66
             +WVRPEVYPL GA+G    +   QL RNA+ NP+ R+ K +R  G+LEN DEG +Y ++ 
Sbjct:     3 RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHN 62

Query:    67 LRRFVRDKPPQIMPSVNEFFSRDN 90
              R+++R + PQ+MPS+N FFS+++
Sbjct:    63 FRKYLRTRQPQVMPSLNRFFSQED 86


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        90   0.00091  102 3  11 22  0.47    29
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  117 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.34u 0.12s 10.46t   Elapsed:  00:00:00
  Total cpu time:  10.34u 0.12s 10.46t   Elapsed:  00:00:00
  Start:  Thu May  9 16:03:58 2013   End:  Thu May  9 16:03:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035098001 SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (93 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
pfam06522	73	pfam06522, B12D, NADH-ubiquinone reductase complex	6e-24

>gnl|CDD|203472 pfam06522, B12D, NADH-ubiquinone reductase complex 1 MLRQ subunit

 Score = 85.8 bits (213), Expect = 6e-24
 Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 8  WVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENAL 67
            RPE+ PLF A+GAAVG     L+R   TNP+VR  K N       N +   +Y  +  
Sbjct: 1  KKRPELIPLFVAVGAAVGGATFYLLRLLLTNPDVRWDKKN-------NPEPWEKYAPHKQ 53

Query: 68 RRFVRDKPPQIMPSVNEF 85
           +F R   P   P  NEF
Sbjct: 54 YKFYRVN-PDYSPLKNEF 70

The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear and is found in plants, insects, fungi and higher metazoans. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation. Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PF06522	73	B12D: NADH-ubiquinone reductase complex 1 MLRQ sub	99.92

>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []

Probab=99.92  E-value=4.4e-26  Score=145.72  Aligned_cols=72  Identities=39%  Similarity=0.561  Sum_probs=69.2

Q ss_pred             ccCcchhhHHHHHHHHHHHHHHHHHHHHhcCCceeeecCCccccccchhhhchhhhhhHHHHHhhcCCCCCCcccccccC
Q 047755            8 WVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVNEFFS   87 (90)
Q Consensus         8 Wv~pel~PLf~~ig~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~~~e~~~eg~~y~~h~~R~~~~~~~p~imp~~n~~f~   87 (90)
                      |.+|||||||+|||+|+++|+|+++|+|++||||+|+|++|       .+++++|++|..|||++.+. +|||.+|++ +
T Consensus         1 ~~~pel~PL~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~-------~~pw~~~~~~~~~K~~~~~~-~~~~~~~~~-p   71 (73)
T PF06522_consen    1 KKHPELYPLFVIVGVAVGGATFYLYRLLLTNPDVRWNKKNR-------PEPWEKYKPHEQRKFYSINQ-DYMPLKNNF-P   71 (73)
T ss_pred             CCCccccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCC-------cChhhhcCccccEEeecccc-ccccccccC-C
Confidence            89999999999999999999999999999999999999999       68899999999999999988 999999998 6


Q ss_pred             C
Q 047755           88 R   88 (90)
Q Consensus        88 ~   88 (90)
                      +
T Consensus        72 d   72 (73)
T PF06522_consen   72 D   72 (73)
T ss_pred             C
Confidence            5

It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00