Citrus Sinensis ID: 047765

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MESDDPSSRSNSPPPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEcccccccccccccEEEEEEccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHcccccccEEEcccccccccccccEEEEEEccHHHHccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mesddpssrsnspppqrrricgncdrpqavclchvlpttpittntriliihhpheahhkLNTARLLTKSVRH
Flexible Loop (DISEMBL)
mesddpssrsnspppqrrriCGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPheahhklntarlltksvrh
Low Complexity Region (SEG)
MESDDpssrsnspppqrrrICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH
Disordered region (IsUnstruct)
*******************ICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKL************
Disordered Region (DISOPRED)
**********************NCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVR*
Disordered Region (DISEMBL)
*****************RRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH
Disordered Region (DISPRO)
****************RRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESDDPSSRSNSPPPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q9D0U1	298	DTW domain-containing pro	yes	no	0.722	0.174	0.480	1e-06
Q4R7M4	298	DTW domain-containing pro	N/A	no	0.75	0.181	0.462	6e-06
Q8NBA8	298	DTW domain-containing pro	yes	no	0.75	0.181	0.462	7e-06

>sp|Q9D0U1|DTWD2_MOUSE DTW domain-containing protein 2 OS=Mus musculus GN=Dtwd2 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 29/52 (55%)

Query: 16  QRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLT 67
           +RR  CG C RPQ VCLC  LP  P+  +T + II HP E    L T  LL 
Sbjct: 64  ERRPECGRCSRPQKVCLCPYLPVRPLQISTHLYIIQHPAEESRVLRTVPLLA 115

Mus musculus (taxid: 10090)

>sp|Q4R7M4|DTWD2_MACFA DTW domain-containing protein 2 OS=Macaca fascicularis GN=DTWD2 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%)

Query: 14  PPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLT 67
           P +RR  C  C RPQ VCLC  LP  P+  +T + II HP E +  L T  LL 
Sbjct: 62  PAKRRPECSRCSRPQKVCLCPFLPAHPLHISTHLYIIQHPAEENKVLRTVPLLA 115

Macaca fascicularis (taxid: 9541)

>sp|Q8NBA8|DTWD2_HUMAN DTW domain-containing protein 2 OS=Homo sapiens GN=DTWD2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%)

Query: 14  PPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLT 67
           P +RR  C  C RPQ VCLC  LP  P+  +T + II HP E +  L T  LL 
Sbjct: 62  PAERRPECTRCSRPQKVCLCPFLPAHPLHISTHLYIIQHPAEENKVLRTVPLLA 115

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
297827825	251	DTW domain-containing protein [Arabidops	0.777	0.223	0.696	2e-15
255577459	249	conserved hypothetical protein [Ricinus	0.861	0.248	0.656	4e-15
356503444	242	PREDICTED: DTW domain-containing protein	0.930	0.276	0.623	2e-14
15227419	253	DTW domain-containing protein [Arabidops	0.75	0.213	0.703	2e-14
224087020	247	predicted protein [Populus trichocarpa]	0.708	0.206	0.705	2e-12
225441854	254	PREDICTED: DTW domain-containing protein	0.861	0.244	0.564	9e-12
449463356	246	PREDICTED: DTW domain-containing protein	0.680	0.199	0.612	2e-10
449510541	246	PREDICTED: LOW QUALITY PROTEIN: DTW doma	0.680	0.199	0.591	9e-10
294460758	264	unknown [Picea sitchensis]	0.833	0.227	0.491	2e-08
442749593	263	Putative biological process [Ixodes rici	0.972	0.266	0.368	2e-06

>gi|297827825|ref|XP_002881795.1| DTW domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327634|gb|EFH58054.1| DTW domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 47/56 (83%)

Query: 17 RRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH 72
          RR+IC NCDRP A+CLCHVLP   I TNT+I+I+HHPHE+ HKLNT  LLTKS+R+
Sbjct: 10 RRQICNNCDRPNAICLCHVLPADLIPTNTKIIILHHPHESRHKLNTTPLLTKSLRN 65

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577459|ref|XP_002529608.1| conserved hypothetical protein [Ricinus communis] gi|223530893|gb|EEF32753.1| conserved hypothetical protein [Ricinus communis]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 11 NSPPPQR--RRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTK 68
           SPP QR  R IC NCDRP  VCLCHV+P  PI T T+ILI+ HPHE+HHKL+T  LLTK
Sbjct: 7  TSPPSQRPRRSICDNCDRPLPVCLCHVIPVPPIPTTTQILIVQHPHESHHKLSTTPLLTK 66

Query: 69 SVRH 72
          S+ H
Sbjct: 67 SLLH 70

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503444|ref|XP_003520518.1| PREDICTED: DTW domain-containing protein 2-like [Glycine max]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 48/69 (69%), Gaps = 2/69 (2%)

Query: 2  ESDDPSSRSNSPPPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLN 61
          E+D PS     P  QRR IC NCDRP  VCLCH LP  PI T T+ILII HPHEA HKL+
Sbjct: 7  EADFPSP--EEPHRQRRSICSNCDRPSRVCLCHALPLPPIQTTTQILIIQHPHEARHKLS 64

Query: 62 TARLLTKSV 70
          T  +LTKS+
Sbjct: 65 TTPILTKSL 73

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227419|ref|NP_181706.1| DTW domain-containing protein [Arabidopsis thaliana] gi|2335102|gb|AAC02772.1| hypothetical protein [Arabidopsis thaliana] gi|18491231|gb|AAL69440.1| At2g41750/T11A7.15 [Arabidopsis thaliana] gi|26451167|dbj|BAC42687.1| unknown protein [Arabidopsis thaliana] gi|56550677|gb|AAV97792.1| At2g41750 [Arabidopsis thaliana] gi|330254934|gb|AEC10028.1| DTW domain-containing protein [Arabidopsis thaliana]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 44/54 (81%)

Query: 17 RRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSV 70
          RR+IC NCDRP A+CLCHVLP   I TNT I+I+HHPHE+ HKLNT  LLTKS+
Sbjct: 10 RRQICDNCDRPNAICLCHVLPADLIPTNTEIIILHHPHESRHKLNTTPLLTKSL 63

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087020|ref|XP_002308031.1| predicted protein [Populus trichocarpa] gi|222854007|gb|EEE91554.1| predicted protein [Populus trichocarpa]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 41/51 (80%)

Query: 20 ICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSV 70
          IC  CDRP  VCLCHV+PT PI T T+I+II HPHE+HHKLNT  LLTKS+
Sbjct: 21 ICHKCDRPIPVCLCHVIPTPPIPTRTQIIIIQHPHESHHKLNTTPLLTKSL 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441854|ref|XP_002278498.1| PREDICTED: DTW domain-containing protein 2-like [Vitis vinifera]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 44/62 (70%)

Query: 7  SSRSNSPPPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLL 66
          SS  +     RRRIC NC RP+ VCLC  LP+ PI+T T+I+I+HHPHE  HKL+T  +L
Sbjct: 20 SSGVDGGSESRRRICDNCSRPENVCLCGSLPSEPISTATQIVILHHPHEHRHKLSTVPIL 79

Query: 67 TK 68
          TK
Sbjct: 80 TK 81

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463356|ref|XP_004149400.1| PREDICTED: DTW domain-containing protein 2-like [Cucumis sativus]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 38/49 (77%)

Query: 20 ICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTK 68
          IC NC+RPQ VCLC  LP+ PI T T+I+I+ HPHE+ HKL+T  +LTK
Sbjct: 24 ICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHESQHKLSTTPILTK 72

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510541|ref|XP_004163694.1| PREDICTED: LOW QUALITY PROTEIN: DTW domain-containing protein 2-like [Cucumis sativus]

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 37/49 (75%)

Query: 20 ICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTK 68
          IC NC+RPQ VCLC  LP+ PI T T+ +I+ HPHE+ HKL+T  +LTK
Sbjct: 24 ICSNCNRPQPVCLCKFLPSPPIATKTKXIILQHPHESQHKLSTTPILTK 72

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294460758|gb|ADE75953.1| unknown [Picea sitchensis]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 9  RSNSPPPQRRRIC-GNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLT 67
          R      Q+R  C G C+RP  VCLC+VLP+  + T+TRI+I+ HPHE  HKL+T  L+ 
Sbjct: 5  RGEQKQKQQREKCRGGCERPANVCLCNVLPSEALETSTRIIILQHPHELRHKLSTVPLIQ 64

Query: 68 K 68
          K
Sbjct: 65 K 65

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|442749593|gb|JAA66956.1| Putative biological process [Ixodes ricinus]

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)

Query: 1  MESDDPS------SRSNSPPPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPH 54
          M S+D S      S  ++ PP +R +C  C RP AVC C  LP TP+  ++++ I+ HP 
Sbjct: 1  MTSEDESEVLSDLSNISADPPAKRALCNKCRRPPAVCWCSSLPETPVPVSSKVFILQHPG 60

Query: 55 EAHHKLNTARLLTKSV 70
          E    L TA +L  ++
Sbjct: 61 EVKRNLRTAPMLEAAL 76

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2054391	253	AT2G41750 "AT2G41750" [Arabido	0.708	0.201	0.705	4.1e-17
UNIPROTKB|Q4KGD1	198	PFL_1576 "DTW domain protein"	0.597	0.217	0.488	1.1e-07
UNIPROTKB|Q885V3	199	PSPTO_1728 "Uncharacterized pr	0.597	0.216	0.511	1.5e-07
MGI|MGI:1916107	298	Dtwd2 "DTW domain containing 2	0.638	0.154	0.5	2.1e-07
FB|FBgn0037492	251	CG10050 [Drosophila melanogast	0.638	0.183	0.413	3.8e-05
UNIPROTKB|Q8E8V2	197	SO_4554 "DTW domain-containing	0.625	0.228	0.382	0.00028
TIGR_CMR|SO_4554	197	SO_4554 "conserved hypothetica	0.625	0.228	0.382	0.00028
UNIPROTKB|Q482Z3	243	CPS_2149 "DTW domain protein"	0.694	0.205	0.307	0.0006
TIGR_CMR|CPS_2149	243	CPS_2149 "DTW domain protein"	0.694	0.205	0.307	0.0006

TAIR|locus:2054391 AT2G41750 "AT2G41750" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 36/51 (70%), Positives = 41/51 (80%)

Query:    20 ICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSV 70
             IC NCDRP A+CLCHVLP   I TNT I+I+HHPHE+ HKLNT  LLTKS+
Sbjct:    13 ICDNCDRPNAICLCHVLPADLIPTNTEIIILHHPHESRHKLNTTPLLTKSL 63

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q4KGD1 PFL_1576 "DTW domain protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query:    21 CGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARL 65
             C  C RP   CLC ++P  P  + TR+L++ HP E +H LNTARL
Sbjct:     6 CERCLRPAGHCLCPLIPQLP--SRTRVLLLQHPSEVNHALNTARL 48

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q885V3 PSPTO_1728 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 120 (47.3 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query:    21 CGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARL 65
             C  C RP   CLC ++P   I + TR+LI+ HP E  H LNTARL
Sbjct:     6 CKRCLRPTGYCLCALIPQ--IESRTRVLILQHPDEVSHALNTARL 48

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1916107 Dtwd2 "DTW domain containing 2" [Mus musculus (taxid:10090)]

 Score = 124 (48.7 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 23/46 (50%), Positives = 26/46 (56%)

Query:    21 CGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLL 66
             CG C RPQ VCLC  LP  P+  +T + II HP E    L T  LL
Sbjct:    69 CGRCSRPQKVCLCPYLPVRPLQISTHLYIIQHPAEESRVLRTVPLL 114

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0037492 CG10050 [Drosophila melanogaster (taxid:7227)]

 Score = 102 (41.0 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 19/46 (41%), Positives = 25/46 (54%)

Query:    21 CGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLL 66
             C  C RP  VC C  LP  P   +++I+I+ HP E    L TA +L
Sbjct:    23 CEKCKRPVVVCWCPALPHPPEAVSSQIVILQHPAEEKRSLRTALML 68

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8E8V2 SO_4554 "DTW domain-containing protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 92 (37.4 bits), Expect = 0.00028, P = 0.00028
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query:    21 CGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLT 67
             C  C  P   CLC  L    I   T++L++ HP E  HK N+ R+L+
Sbjct:     6 CPTCCYPMNACLCSHLQQ--IKPQTQLLVLQHPSEVEHKKNSVRVLS 50

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4554 SO_4554 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 92 (37.4 bits), Expect = 0.00028, P = 0.00028
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query:    21 CGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLT 67
             C  C  P   CLC  L    I   T++L++ HP E  HK N+ R+L+
Sbjct:     6 CPTCCYPMNACLCSHLQQ--IKPQTQLLVLQHPSEVEHKKNSVRVLS 50

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q482Z3 CPS_2149 "DTW domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 91 (37.1 bits), Expect = 0.00060, P = 0.00060
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query:    20 ICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVR 71
             +C  C RPQ  C+C  +   P   +  ++++ HP E      T  LL KS++
Sbjct:     5 LCLGCQRPQKACICTFIADIP--NDIHVVVLQHPSEVSQTKGTVALLAKSLQ 54

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_2149 CPS_2149 "DTW domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 91 (37.1 bits), Expect = 0.00060, P = 0.00060
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query:    20 ICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVR 71
             +C  C RPQ  C+C  +   P   +  ++++ HP E      T  LL KS++
Sbjct:     5 LCLGCQRPQKACICTFIADIP--NDIHVVVLQHPSEVSQTKGTVALLAKSLQ 54


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.449    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       72        58   0.00091  102 3  11 22  0.45    27
                                                     29  0.47    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  450 (48 KB)
  Total size of DFA:  88 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.87u 0.14s 8.01t   Elapsed:  00:00:01
  Total cpu time:  7.87u 0.14s 8.01t   Elapsed:  00:00:01
  Start:  Thu May  9 16:42:34 2013   End:  Thu May  9 16:42:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_403015.1 annotation not avaliable (251 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	72
pfam03942	196	pfam03942, DTW, DTW domain	5e-15
COG3148	231	COG3148, COG3148, Uncharacterized conserved protei	4e-07

>gnl|CDD|217805 pfam03942, DTW, DTW domain

 Score = 65.5 bits (160), Expect = 5e-15
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 17 RRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH 72
          RR  C  C  P   CLC  LP  P+   T++ I+ HP+E+   LNT RLL   +  
Sbjct: 1  RRFRCERCCVPVKHCLCAYLP--PLEAPTQVDILQHPNESDRPLNTGRLLALLLAD 54

This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after. Length = 196

>gnl|CDD|225690 COG3148, COG3148, Uncharacterized conserved protein [Function unknown]

 Score = 44.4 bits (105), Expect = 4e-07
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 17 RRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSV 70
          R R C  C  P+  CLC  +P  P+   +R  ++ H  E     NT RL+   +
Sbjct: 26 RVRRCQRCLLPEKHCLCATIP--PLEARSRFCLLMHDTEPMKPSNTGRLIADIL 77

Length = 231

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PF03942	203	DTW: DTW domain; InterPro: IPR005636 This presumed	99.76
COG3148	231	Uncharacterized conserved protein [Function unknow	99.7
KOG4382	276	consensus Uncharacterized conserved protein, conta	99.59
PRK00939	99	translation initiation factor Sui1; Reviewed	84.0

>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins

Probab=99.76  E-value=5.6e-19  Score=121.86  Aligned_cols=54  Identities=39%  Similarity=0.836  Sum_probs=51.4

Q ss_pred             CCcCCCCCCCCCCceeeCCcCCCCCCCcceEEEEeCCCcccCCCChHHHHHhhhcC
Q 047765           17 RRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH   72 (72)
Q Consensus        17 ~r~~C~~C~~p~~~ClC~~ip~~~l~~~~~v~ILqHp~E~~r~~nT~rLl~~~L~~   72 (72)
                      ||.+|++|++|..+|+|+++|  +++++++|+|||||+|++|++|||+|+++++++
T Consensus         1 rr~~C~~C~~~~~~C~C~~~~--~v~~~~~v~iL~Hp~E~~~~~nTg~l~~~~l~~   54 (203)
T PF03942_consen    1 RRFRCPRCWRPLSLCICSLIP--PVELPTRVVILQHPKERKRASNTGRLLALCLPD   54 (203)
T ss_pred             CCCcCcCCCCccccCCCcCCC--CCCCCcEEEEEECchhhhcccChHHHHHHhhcc
Confidence            689999999999999999998  999999999999999999999999999998863

Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.

>COG3148 Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=9.2e-18  Score=120.50  Aligned_cols=57  Identities=30%  Similarity=0.636  Sum_probs=54.0

Q ss_pred             CCcCCcCCCCCCCCCCceeeCCcCCCCCCCcceEEEEeCCCcccCCCChHHHHHhhhcC
Q 047765           14 PPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH   72 (72)
Q Consensus        14 ~~~~r~~C~~C~~p~~~ClC~~ip~~~l~~~~~v~ILqHp~E~~r~~nT~rLl~~~L~~   72 (72)
                      .+.+..+|.+|+++.+.|+|++||  +++.+++|+||||++|+.|++||||||+++|++
T Consensus        23 rg~~~~rC~~C~l~~~~CLCa~ip--~~ea~~~~~Ll~hdtE~~kpsNTgrliad~l~d   79 (231)
T COG3148          23 RGNRVRRCQRCLLPEKHCLCATIP--PLEARSRFCLLMHDTEPMKPSNTGRLIADILAD   79 (231)
T ss_pred             cCCcchhhhhhCChhhhccccCcC--CcccceeEEEEecCccccCCCcchhHHHHhhhh
Confidence            356789999999999999999999  999999999999999999999999999999975

>KOG4382 consensus Uncharacterized conserved protein, contains DTW domain [Function unknown]

Probab=99.59  E-value=1.5e-15  Score=110.67  Aligned_cols=62  Identities=37%  Similarity=0.745  Sum_probs=58.4

Q ss_pred             CCCCCcCCcCCCCCCCCCCceeeCCcCCCCCCCcceEEEEeCCCcccCCCChHHHHHhhhcC
Q 047765           11 NSPPPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH   72 (72)
Q Consensus        11 ~~~~~~~r~~C~~C~~p~~~ClC~~ip~~~l~~~~~v~ILqHp~E~~r~~nT~rLl~~~L~~   72 (72)
                      ....+.+|+.|+.|.||..+|||..+|.+.+++++.|+|||||.|.+|++||.+|+.+.|.+
T Consensus        13 t~d~~~rR~~C~~CdrP~~lClC~~lp~p~~~~~~~I~ILqHp~E~kh~LnTt~il~lgL~n   74 (276)
T KOG4382|consen   13 TLDMGTRRPTCPSCDRPSQLCLCKKLPSPCFDNQVSITILQHPLERKHALNTTRILRLGLKN   74 (276)
T ss_pred             ccCCCcCCCCCCccCCCceeEEecCCCCCCcCCcceEEEeeCchHhhhhcchhhHHHhcccc
Confidence            45678999999999999999999999999999999999999999999999999999999864

>PRK00939 translation initiation factor Sui1; Reviewed

Probab=84.00  E-value=1.1  Score=28.66  Aligned_cols=19  Identities=32%  Similarity=1.013  Sum_probs=18.0

Q ss_pred             cCCCCCCCCCCceeeCCcC
Q 047765           19 RICGNCDRPQAVCLCHVLP   37 (72)
Q Consensus        19 ~~C~~C~~p~~~ClC~~ip   37 (72)
                      +.|+.|+.+...|.|..++
T Consensus         2 ~~c~~c~~~~~~c~c~~~~   20 (99)
T PRK00939          2 EICPVCGLPKELCVCEEVA   20 (99)
T ss_pred             CcCccCCCCHHHccCcccC
Confidence            5799999999999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00