Citrus Sinensis ID: 047770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
RFPREIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDVVGDTLIIELQFLSVSAVRLLNC
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEccEEcccccccccEEEEccEEEccEEEEEEEEcccccccccccEEEEEEEEccccccccccEEEEEEEEEEEEccccEEEEEEcccEEEEccccccccccccEEHHHHcccccccEEEEEEEEEEEEEcccEEEEEEEccccccccccccccccccccccccccccEEEccccEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEccccccccEEEEEEEEEccccccccHHccccccccccccccccEEEEEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEccHHHHHHHHccccEcccEEEEcccEEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEEcEEEEEcccccccccHHcccHHHHHHHccccEEEEEEEEEEEcccccEEEEEEEcccccccEEEEEEEcccHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccccEEEEccEEccccccccccccccEHHHHccccEEccEEEEEEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
rfpreirnsppahytVELNsysklfrpeklEIFESGLFEAGNYKWRLVfypngnkqddgdgYISLYLKIdgcntcsdnwsvhVNYKLFVLYKdneflahraegpirrfdhnkhewgfgkflSLDTLHEYLANDTLVLGAEVFVIVSTGRKECVSIlknpdgattrtwkipkfsalddnprfsqaytvderkwklrlypmgtaagkGEFLALHLMLVdvldpapkravfAEFDLLLVDQkrhsnsfkrqYSKWFSAQcyvlghrkfisltdlyqsdvvgDTLIIELQFLSVSAVRLLNC
Flexible Loop (DISEMBL)
rfpreirnsppahytvelnsYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEYLANDTLVLGAEVFVIVSTGRKECvsilknpdgattrtwkipkfsalddnprfsqaytvderkwkLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDVVGDTLIIELQFlsvsavrllnc
Low Complexity Region (SEG)
RFPREIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDVVGDTLIIELQFLSVSAVRLLNC
Disordered region (IsUnstruct)
*************YTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDVVGDTLIIELQFLSVSAVRLL**
Disordered Region (DISOPRED)
***RE*RNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHS*SFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDVVGDTLIIELQFLSVSAVRLLN*
Disordered Region (DISEMBL)
RFPREIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDVVGDTLIIELQFLSVSAVRLLNC
Disordered Region (DISPRO)
****EIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDVVGDTLIIELQFLSVSAVRLLNC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RFPREIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDVVGDTLIIELQFLSVSAVRLLNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.348	0.093	0.336	4e-10
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.348	0.093	0.318	2e-09
Q8T126	1304	Probable inactive serine/	no	no	0.848	0.194	0.220	2e-07
O22286	408	BTB/POZ and MATH domain-c	no	no	0.419	0.306	0.255	1e-06
Q8RY18	1055	MATH domain-containing pr	no	no	0.345	0.097	0.318	3e-06
P34568	451	BTB and MATH domain-conta	yes	no	0.5	0.330	0.293	5e-05
Q1EBV6	410	BTB/POZ and MATH domain-c	no	no	0.348	0.253	0.237	0.0002
Q86AY4	449	TNF receptor-associated f	no	no	0.322	0.213	0.301	0.0007

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 9/113 (7%)

Query: 35  SGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDN 94
           S +F  G YKWR++ +P GN  D    ++S+YL +         WS +  + L V+ + N
Sbjct: 73  SDVFVVGGYKWRILIFPKGNNVD----HLSMYLDVADAANLPYGWSRYSQFSLAVVNQVN 128

Query: 95  EFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHE----YLANDTLVLGAEVFV 143
              + R E    +F+  + +WGF  F+ L  L+E    YL NDT+++ AEV V
Sbjct: 129 NRYSIRKETQ-HQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAV 180

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 9/113 (7%)

Query: 35  SGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDN 94
           S +F  G YKWR++ +P GN  D    ++S+YL +    +    WS +  + L V+ + +
Sbjct: 74  SDVFVVGGYKWRILIFPKGNNVD----HLSMYLDVSDAASLPYGWSRYAQFSLAVVNQIH 129

Query: 95  EFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHE----YLANDTLVLGAEVFV 143
                R E    +F+  + +WGF  F+ L  L++    YL NDT+++ AEV V
Sbjct: 130 TRYTVRKETQ-HQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAV 181

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 133/299 (44%), Gaps = 46/299 (15%)

Query: 14   YTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCN 73
            + + +N++S      + + F S +F      WR  FY NG K     G +S++  I  C+
Sbjct: 1028 WIISINNFSN-----RKDQFYSPIFSLIGSNWRCKFYSNG-KDASTSGKLSIF--ISNCD 1079

Query: 74   TCSDNWSV----HVNYKLFVLYKDNEFLAHRAEGP----IRRFDHNKHEWGFGKFLSLDT 125
              ++ +++     ++YKL ++ + N   + +        I+ F+H     G+G F+ L +
Sbjct: 1080 LLNNPFTIFLEKSISYKLTLINQKNPNESIQKSSSHTFSIKEFNH-----GYGSFIGLFS 1134

Query: 126  L----HEYLANDTL---VLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDN 178
            L    + +L N+T+   +  A    +V+T  K  + + +        ++ +P  S   + 
Sbjct: 1135 LLNPNNGFLVNNTIKVRIDAAPTSPLVNTYDKYNIGLNQ------AFSYSVPMMSKKSE- 1187

Query: 179  PRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQ 238
            P  S  +    RKW +++YPMG  +    ++++ L   D  +          F L L+ Q
Sbjct: 1188 PFISPIFMSCGRKWIIKIYPMGQPSSN--YMSVFLEYRDEGEEN------VHFSLELISQ 1239

Query: 239  KRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTLIIELQFLSVSAVR 294
                 S K      F+++    G+ KFI ++ L   D   +V DT+I+ +  L +  ++
Sbjct: 1240 LYPEQSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVSILQLKPIK 1298

Dictyostelium discoideum (taxid: 44689)

>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 16/141 (11%)

Query: 13  HYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGC 72
            +T++  S +K   P K    +S +F  G Y W + FYP+G   +D   YISL++ +   
Sbjct: 28  QFTIQGYSLAKGMSPGKF--IQSDIFSVGGYDWAIYFYPDGKNPEDQSSYISLFIAL--- 82

Query: 73  NTCSDNWSVHVNYKLFVL-------YKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDT 125
              SD+  +   ++L ++       +K +       EG      +    WG+ +F     
Sbjct: 83  --ASDSNDIRALFELTLMDQSGKGKHKVHSHFDRALEGGPYTLKYKGSMWGYKRFFKRSA 140

Query: 126 LH--EYLANDTLVLGAEVFVI 144
           L   +YL +D LV+   V V+
Sbjct: 141 LETSDYLKDDCLVINCTVGVV 161

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 37  LFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEF 96
           +FE G YKW ++ YP G    D   ++SL+L +         WS    + + V  KD + 
Sbjct: 90  VFEVGGYKWYILIYPQGC---DVCNHLSLFLCVAHHEKLLPGWSHFAQFTIAVSNKDPKK 146

Query: 97  LAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEYLANDT--LVLGAEVFVI 144
             H     + RF   +H+WG+ KF+ L  L E   +D+  L + A+V VI
Sbjct: 147 SKH--SDTLHRFWKKEHDWGWKKFIELPKLKEGFIDDSGCLTIKAQVQVI 194

Arabidopsis thaliana (taxid: 3702)

>sp|P34568|BAT43_CAEEL BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=3 SV=2

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 25/174 (14%)

Query: 13  HYTVELNSYSKLFRPEKLEIFESGLFEAG---NYKWRLVFYPNGNKQDDGDGYISLYLKI 69
           +Y   +N++S   R E  E+ +S  F AG     KW L   P G  ++  D Y+SLYL +
Sbjct: 97  NYMWTINNFS-FCREEMGEVLKSSTFSAGCNDKLKWCLRINPKGLDEESRD-YLSLYLLL 154

Query: 70  DGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLS----LDT 125
             CN       V   +K  +L    E           RF   K +WGF KF+     LD 
Sbjct: 155 VQCNKSE----VRAKFKFSILNAKREETKAMESQRAYRFVQGK-DWGFKKFIRRDFLLDE 209

Query: 126 LHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGAT--TRTWKIPKFSALDD 177
            +  L  D L +  EV V+  T          N  G T  ++ +K+P     DD
Sbjct: 210 ANGLLPGDRLSIFCEVSVVAET---------VNVTGQTNVSQLFKVPPCRLADD 254

In complex with a cullin, may act in ubiquitination and proteasomal degradation processes.

Caenorhabditis elegans (taxid: 6239)

>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana GN=BPM5 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 14/118 (11%)

Query: 38  FEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVL------- 90
           F  G Y+W + FYP+G   +D   Y+S+++ +      S+   V   ++L ++       
Sbjct: 55  FSVGGYQWGIFFYPDGKNPEDNSSYVSVFIAL-----ASEGTEVRALFELALVDQSGKGK 109

Query: 91  YKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFVIVS 146
           +K +       +G      +    WG+ +F     L   +YL +D L++   V V+VS
Sbjct: 110 HKVHSHFERSLDGGPYTLKYRGSMWGYKRFFRRSILETSDYLKDDCLIINCTVGVVVS 167

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q86AY4|Y2340_DICDI TNF receptor-associated factor family protein DDB_G0272340 OS=Dictyostelium discoideum GN=DDB_G0272340 PE=3 SV=2

 Score = 44.7 bits (104), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 20/116 (17%)

Query: 33  FESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYL-KIDGCNTCSDNWSVHVNYKLFVLY 91
            ES  F  GN K+++ FYPNG   D+   ++S+YL K D      D     V +   +L 
Sbjct: 334 IESPEFMVGNLKFKIQFYPNGGLSDESKDFLSIYLYKFD------DQTPSKVQFSFELLN 387

Query: 92  KDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEYLANDTLVLGAEVFVIVST 147
           KD  F  +R       F H +++WG+  F+          N++LV     FVI ++
Sbjct: 388 KD--FTRNRKLASTNIF-HTENKWGWRSFI----------NNSLVTTQTGFVIQNS 430

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
356503299	322	PREDICTED: uncharacterized protein LOC10	0.969	0.897	0.405	3e-56
224074494	321	predicted protein [Populus trichocarpa]	0.966	0.897	0.393	1e-48
225429033	331	PREDICTED: uncharacterized protein LOC10	0.949	0.854	0.389	8e-48
359475437	314	PREDICTED: uncharacterized protein LOC10	0.949	0.901	0.389	9e-48
296083026	672	unnamed protein product [Vitis vinifera]	0.949	0.421	0.389	1e-47
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.959	0.905	0.387	4e-47
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.929	0.876	0.392	7e-47
296083023	389	unnamed protein product [Vitis vinifera]	0.949	0.727	0.385	5e-46
224139110	324	predicted protein [Populus trichocarpa]	0.969	0.891	0.377	9e-45
225429035	330	PREDICTED: MATH domain-containing protei	0.939	0.848	0.389	1e-44

>gi|356503299|ref|XP_003520448.1| PREDICTED: uncharacterized protein LOC100809118 [Glycine max]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 188/301 (62%), Gaps = 12/301 (3%)

Query: 4   REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
           R  R+ PPAHY  ++ SYS+L     +E +E+ +F+AG YKWRL+ YP+GN + +G+GY+
Sbjct: 23  RSGRDLPPAHYLFKIESYSELMNT-GVEKYETNVFQAGGYKWRLILYPSGNIKSNGNGYV 81

Query: 64  SLYLKIDGCNTCSDNWSVHVNYKLFVL-YKDNEFLA-HRAEGPIRRFDHNKHEWGFGKFL 121
           SLYL I      S  W V VN+KLFV   K+N +L    A+G +R+F   K EWGF + +
Sbjct: 82  SLYLAIADTEKLSSGWEVDVNFKLFVFNQKNNNYLTIQDADGTVRKFQEMKTEWGFEQLI 141

Query: 122 SLDTL----HEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDD 177
           SL+TL    + Y   D+ + GAEVFVI  +G+ E +S++K P   T  TWKI KFS L++
Sbjct: 142 SLETLLDSSNGYHVEDSCLFGAEVFVISRSGKWESLSMVKEPPHGTF-TWKIGKFSTLEE 200

Query: 178 NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237
               S+++TV ER W LR+YP G  + +G+ L+++L L D      KR V+A+F L ++D
Sbjct: 201 TYYHSKSFTVGERDWNLRVYPRGIESERGKGLSVYLQLTDCERFPAKRTVYAKFKLGILD 260

Query: 238 QKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTLIIELQFLSVSAVR 294
           Q  ++   +R  S WF A   + G +K ++L++LY++    +  DT+I+E+Q L +S  +
Sbjct: 261 Q-LNNKYHERTDSHWFRASGNIWGFKKLVALSELYEAAKGYIKDDTVIVEVQILVMSIAK 319

Query: 295 L 295
           +
Sbjct: 320 I 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074494|ref|XP_002304380.1| predicted protein [Populus trichocarpa] gi|118485977|gb|ABK94833.1| unknown [Populus trichocarpa] gi|222841812|gb|EEE79359.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 171/300 (57%), Gaps = 12/300 (4%)

Query: 4   REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
           R  R+ PPAHYT ++ ++S L    K++ FESG FE G+YKWRL  YPNGNK+++GDG+I
Sbjct: 22  RSTRDLPPAHYTFKIENFS-LLANAKIDNFESGDFEVGSYKWRLRLYPNGNKKNNGDGHI 80

Query: 64  SLYLKIDGCNTCSDNWSVHVNYKLFVL--YKDNEFLAHRAEGPIRRFDHNKHEWGFGKFL 121
           SLYL     N     W V+VN++LFV    +D       A+G +RRF   K E GF + +
Sbjct: 81  SLYLAFSNSNALPFGWEVNVNFRLFVYNQIQDKYLTIQYAKGRVRRFHGMKTELGFDQLI 140

Query: 122 SLDTLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDD 177
            L   ++    YL +D  + GAE+FVI  TG+ EC++++  P  + T TWKI  FSALD 
Sbjct: 141 PLTIFNDESKGYLIDDRCIFGAEIFVIKPTGKGECLTLVNQP-VSDTFTWKIQNFSALDQ 199

Query: 178 NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237
               SQ ++    KW L +YP G +  KG+ L+++L + D       R  +AE+ L + D
Sbjct: 200 ESYKSQVFSFGGYKWALLVYPKGNSTEKGKSLSIYLKMEDFETLPCGRTTYAEYMLRVKD 259

Query: 238 QKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTD---LYQSDVVGDTLIIELQFLSVSAVR 294
           Q    +  K+ YS  FS      GH  F+SL D   L +  +V DTL +E+Q   ++ V+
Sbjct: 260 QLFGKHIEKKAYSH-FSYSIKDWGHLNFMSLDDVNALPKGFLVNDTLAVEVQIHVITVVK 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429033|ref|XP_002265318.1| PREDICTED: uncharacterized protein LOC100259955 isoform 1 [Vitis vinifera]

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 163/298 (54%), Gaps = 15/298 (5%)

Query: 4   REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
           R +R+  PAHY   + S S L   + +E +ESG F+ G Y+WRL  YPNGNK+  G+ +I
Sbjct: 28  RTLRSIKPAHYLFRVESVSVLLNTD-IEKYESGSFKVGGYRWRLCLYPNGNKKSGGEDHI 86

Query: 64  SLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNE--FLAHRAEGPIRRFDHNKHEWGFGKFL 121
           SLYL+I         W V VN+KLFV    +E       A+G +R F+  K   GF +FL
Sbjct: 87  SLYLEISDAQKLPVGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRDFNVMKSRCGFAQFL 146

Query: 122 SLDTLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDD 177
           SLD L +    YL +D+ + GAEVFVI  +G+ EC+S++K+PD  T  TW I  FS L++
Sbjct: 147 SLDVLKDPCNGYLMDDSCIFGAEVFVIKYSGKGECLSMIKDPDDGTF-TWVIENFSTLNE 205

Query: 178 NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237
              +S+ +T+ E KWKL LYP G    K + L L L L D      +R ++ EF+LL+ D
Sbjct: 206 EVLYSETFTIKEIKWKLSLYPKGNGKVKNKSLCLFLELADCETLHHQRKLYMEFELLIKD 265

Query: 238 QKRHSN----SFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTLIIELQFL 288
           Q    N      K     WF       G    +SL+DL       ++ D+LI+E + L
Sbjct: 266 QCNDENVEPSHVKSNAKVWFCDSNKEWGFADMVSLSDLNDKSKDFLLNDSLIVEAKIL 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475437|ref|XP_003631686.1| PREDICTED: uncharacterized protein LOC100259955 isoform 2 [Vitis vinifera]

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 163/298 (54%), Gaps = 15/298 (5%)

Query: 4   REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
           R +R+  PAHY   + S S L   + +E +ESG F+ G Y+WRL  YPNGNK+  G+ +I
Sbjct: 11  RTLRSIKPAHYLFRVESVSVLLNTD-IEKYESGSFKVGGYRWRLCLYPNGNKKSGGEDHI 69

Query: 64  SLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNE--FLAHRAEGPIRRFDHNKHEWGFGKFL 121
           SLYL+I         W V VN+KLFV    +E       A+G +R F+  K   GF +FL
Sbjct: 70  SLYLEISDAQKLPVGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRDFNVMKSRCGFAQFL 129

Query: 122 SLDTLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDD 177
           SLD L +    YL +D+ + GAEVFVI  +G+ EC+S++K+PD  T  TW I  FS L++
Sbjct: 130 SLDVLKDPCNGYLMDDSCIFGAEVFVIKYSGKGECLSMIKDPDDGTF-TWVIENFSTLNE 188

Query: 178 NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237
              +S+ +T+ E KWKL LYP G    K + L L L L D      +R ++ EF+LL+ D
Sbjct: 189 EVLYSETFTIKEIKWKLSLYPKGNGKVKNKSLCLFLELADCETLHHQRKLYMEFELLIKD 248

Query: 238 QKRHSN----SFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTLIIELQFL 288
           Q    N      K     WF       G    +SL+DL       ++ D+LI+E + L
Sbjct: 249 QCNDENVEPSHVKSNAKVWFCDSNKEWGFADMVSLSDLNDKSKDFLLNDSLIVEAKIL 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083026|emb|CBI22430.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 163/298 (54%), Gaps = 15/298 (5%)

Query: 4   REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
           R +R+  PAHY   + S S L   + +E +ESG F+ G Y+WRL  YPNGNK+  G+ +I
Sbjct: 369 RTLRSIKPAHYLFRVESVSVLLNTD-IEKYESGSFKVGGYRWRLCLYPNGNKKSGGEDHI 427

Query: 64  SLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNE--FLAHRAEGPIRRFDHNKHEWGFGKFL 121
           SLYL+I         W V VN+KLFV    +E       A+G +R F+  K   GF +FL
Sbjct: 428 SLYLEISDAQKLPVGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRDFNVMKSRCGFAQFL 487

Query: 122 SLDTLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDD 177
           SLD L +    YL +D+ + GAEVFVI  +G+ EC+S++K+PD  T  TW I  FS L++
Sbjct: 488 SLDVLKDPCNGYLMDDSCIFGAEVFVIKYSGKGECLSMIKDPDDGTF-TWVIENFSTLNE 546

Query: 178 NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237
              +S+ +T+ E KWKL LYP G    K + L L L L D      +R ++ EF+LL+ D
Sbjct: 547 EVLYSETFTIKEIKWKLSLYPKGNGKVKNKSLCLFLELADCETLHHQRKLYMEFELLIKD 606

Query: 238 QKRHSN----SFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTLIIELQFL 288
           Q    N      K     WF       G    +SL+DL       ++ D+LI+E + L
Sbjct: 607 QCNDENVEPSHVKSNAKVWFCDSNKEWGFADMVSLSDLNDKSKDFLLNDSLIVEAKIL 664

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/310 (38%), Positives = 172/310 (55%), Gaps = 24/310 (7%)

Query: 4   REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
           R + + PPAHYTV++ S+S L     ++ FESG FEAG YKW+LV +P+G+K  +G+ +I
Sbjct: 14  RYVSDVPPAHYTVKIESFS-LLTKNSVDQFESGEFEAGGYKWKLVLHPHGDKSKNGNDHI 72

Query: 64  SLYLKIDGCNTCSDNWSVHVNYKLFVL--YKDNEFLAHRAEGPIRRFDHNKHEWGFGKFL 121
           SLYL+I G ++   +W V V Y+LF+L   KDN       +   RRF   K +WGF K++
Sbjct: 73  SLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGFDKYI 132

Query: 122 SLDTLHE----YLANDTLVLGAEVFVIVST---GRKECVSILKNPDGATTRTWKIPKFSA 174
           SL    E    YL +D  V GAEVFV       G+ EC+S++K+P       WKI  FS 
Sbjct: 133 SLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIKSPV-TYKHVWKIDNFSK 191

Query: 175 LDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLL 234
           LD     S+ +   ++KWK+R+YP G  +G+G  L+ +L L D     P   ++AE  L 
Sbjct: 192 LDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKIYAEVTLR 251

Query: 235 LVDQ---KRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDV---VGDTLIIELQFL 288
           L DQ   K HS     + S WFSA    +G  +FI L +  Q ++   V D  I+E +  
Sbjct: 252 LQDQIYSKHHSG----KVSYWFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEAE-- 305

Query: 289 SVSAVRLLNC 298
            VS + + N 
Sbjct: 306 -VSIIGVANA 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/298 (39%), Positives = 167/298 (56%), Gaps = 21/298 (7%)

Query: 4   REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
           R + + PPAHYTV++ S+S L     ++ FESG FEAG YKW+LV +P+G+K  +G+ +I
Sbjct: 14  RYVSDVPPAHYTVKIESFS-LLTKNSVDQFESGEFEAGGYKWKLVLHPHGDKSKNGNDHI 72

Query: 64  SLYLKIDGCNTCSDNWSVHVNYKLFVL--YKDNEFLAHRAEGPIRRFDHNKHEWGFGKFL 121
           SLYL+I G ++   +W V V Y+LF+L   KDN       +   RRF   K +WGF K++
Sbjct: 73  SLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGFDKYI 132

Query: 122 SLDTLHE----YLANDTLVLGAEVFVIVST---GRKECVSILKNPDGATTRTWKIPKFSA 174
           SL    E    YL +D  V GAEVFV       G+ EC+S++K+P       WKI  FS 
Sbjct: 133 SLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIKSPV-TYKHVWKIDNFSK 191

Query: 175 LDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLL 234
           LD     S+ +   ++KWK+R+YP G  +G+G  L+ +L L D     P   ++AE  L 
Sbjct: 192 LDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKIYAEVTLR 251

Query: 235 LVDQ---KRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDV---VGDTLIIELQ 286
           L DQ   K HS     + S WFSA    +G  +FI L +  Q ++   V D  I+E +
Sbjct: 252 LQDQIYSKHHSG----KVSYWFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEAE 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083023|emb|CBI22427.3| unnamed protein product [Vitis vinifera]

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/298 (38%), Positives = 160/298 (53%), Gaps = 15/298 (5%)

Query: 4   REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
           R +R+  PAHY   + S S L     +E +ESG FE G YKWRL  YPNGNK+ DGDG+I
Sbjct: 86  RTLRSIQPAHYLFRVESMSVLLDTS-IEKYESGSFEVGGYKWRLCLYPNGNKKSDGDGHI 144

Query: 64  SLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNE--FLAHRAEGPIRRFDHNKHEWGFGKFL 121
           SLYL I         W V V++KLFV    +E        +G +R F+  K + GF +FL
Sbjct: 145 SLYLVISDTQNLPLGWEVTVSFKLFVFNHIHEEYLTVQDTDGKVRHFNVMKTQCGFAQFL 204

Query: 122 SLDTLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDD 177
            LD L +    YL +D+ + GAEVFVI  +G+ EC+S++K PD  T  TW I  FS L  
Sbjct: 205 PLDVLTDPCNGYLMDDSCIFGAEVFVIKYSGKGECLSMIKEPDDGTF-TWMIENFSRLKQ 263

Query: 178 NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237
              +S+ +TV + KWKL +YP G    K + L+L L L +      +R ++ EF+LL+ +
Sbjct: 264 EAIYSEIFTVKDFKWKLVVYPKGNYKAKNKSLSLFLELANRGTLHHQRKLYTEFELLVKE 323

Query: 238 QKR----HSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTLIIELQFL 288
           Q        +  K     WF       G    ISL+DL       ++ DTLI+E + +
Sbjct: 324 QCNGGHVKPSHVKLNGQTWFCDSIKDWGFSNMISLSDLKDKSNHFILNDTLIVEAKIM 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139110|ref|XP_002326770.1| predicted protein [Populus trichocarpa] gi|222834092|gb|EEE72569.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 167/305 (54%), Gaps = 16/305 (5%)

Query: 4   REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
           R IR+ PPAHY  ++ ++S L    K++  ESG FE  +YKWRL  +PNGNK+ +GDG+I
Sbjct: 15  RSIRDLPPAHYAFKIENFS-LLSNTKVDSVESGDFEVDSYKWRLCLHPNGNKKSNGDGHI 73

Query: 64  SLYLKIDGCNTCSDNWSVHVNYKLFVLYK--DNEFLAHRAEGPIRRFDHNKHEWGFGKFL 121
           SLYL     N     W V+V++KLFV  +  D       A G +RRF   K E GF + L
Sbjct: 74  SLYLAFSKSNAPPLGWEVNVDFKLFVYNQIHDKYLTIQNANGRVRRFHGMKTEMGFDQLL 133

Query: 122 SLDTLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDD 177
            L   ++    YL +D    GAE+FVI  T + EC+S++K P   ++ TW I KFSALD 
Sbjct: 134 PLTLFNDESKGYLIDDCCTFGAEIFVIKHTSKGECLSLMKQP-SHSSFTWSIQKFSALDQ 192

Query: 178 NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237
               SQ +     KW L +YP G +  KG+ L++ L L D       R ++AEF L + D
Sbjct: 193 ESCKSQVFATGGHKWTLLVYPKGNSTFKGKSLSIFLTLEDSETLPSGRTMYAEFTLRVRD 252

Query: 238 Q--KRHSNSFKRQYSKWFSAQCYVLGHRKFISLTD---LYQSDVVGDTLIIELQFLSVSA 292
           Q   +H    ++  +  FS      GH  F+SL +   L +  +V +TL++E Q   ++ 
Sbjct: 253 QLFGKH---VEKTANCHFSNSINDWGHFNFMSLDELNTLAKGFLVNNTLVVEAQIHVLTV 309

Query: 293 VRLLN 297
           V+ L+
Sbjct: 310 VKELS 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429035|ref|XP_002268000.1| PREDICTED: MATH domain-containing protein At5g43560-like [Vitis vinifera]

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 164/298 (55%), Gaps = 18/298 (6%)

Query: 4   REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
           R +R+  PAHY  ++ S S L   + +E +ESG FE G YKW L  YPNGNK+ DG+G+I
Sbjct: 27  RTLRSIQPAHYLFKVESLSVLLNTD-IEKYESGSFEVGGYKWSLCIYPNGNKKSDGEGHI 85

Query: 64  SLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNE--FLAHRAEGPIRRFDHNKHEWGFGKFL 121
           SLYL+I         W V VN+KLFV    +E       A+G +R F+  K   GF +FL
Sbjct: 86  SLYLEISEAQNLPLGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRHFNAMKTRCGFAQFL 145

Query: 122 SLDTLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNP-DGATTRTWKIPKFSALD 176
           SLD L +    YL +D+ + GAEVFVI  +G+ E +S++K+P DG  T TW I  FSAL+
Sbjct: 146 SLDVLKDPRNGYLMDDSCIFGAEVFVIKYSGKGESLSMIKDPVDG--TFTWTIENFSALN 203

Query: 177 DNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLV 236
                S+ +TV E KW+L LYP G    K + L+L L L +  +   +R ++  F+LL+ 
Sbjct: 204 QEVLDSEIFTVKELKWRLVLYPKGNNKAKNKSLSLFLELTN-RETLHQRKLYTAFELLIK 262

Query: 237 DQKRHS----NSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTLIIELQF 287
           DQ        +  K     WF       G    +SL+DL       ++ D+LI+E + 
Sbjct: 263 DQCNDEIVMPSHVKSNAKVWFRDTIENWGFPNMVSLSDLNDKSKYFLLNDSLIVEAKI 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.922	0.889	0.352	1.3e-43
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.966	0.822	0.328	1.9e-37
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.969	0.823	0.313	1.7e-36
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.956	0.678	0.321	7.2e-36
TAIR|locus:2151054	349	AT5G26300 "AT5G26300" [Arabido	0.966	0.825	0.303	3.2e-33
TAIR|locus:2056008	411	AT2G04190 "AT2G04190" [Arabido	0.969	0.703	0.298	6.7e-33
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.966	0.793	0.302	5.4e-31
TAIR|locus:2151049	333	AT5G26290 "AT5G26290" [Arabido	0.922	0.825	0.322	3e-30
TAIR|locus:2098318	370	AT3G28220 "AT3G28220" [Arabido	0.929	0.748	0.298	3.8e-30
TAIR|locus:2151064	352	AT5G26320 "AT5G26320" [Arabido	0.969	0.821	0.291	6.2e-30

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 103/292 (35%), Positives = 160/292 (54%)

Query:     4 REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
             + I ++PP HY V++ S+S L +   +E +E+  FEAG YKW+LV YPNGNK  +   ++
Sbjct:    12 KSISDAPPTHYMVKIESFSLLTK-HAIERYETESFEAGGYKWKLVLYPNGNKSKNTKDHV 70

Query:    64 SLYLKIDGCNTCSDNWSVHVNYKLFVL--YKDNEFLAHRAEGPIRRFDHNKHEWGFGKFL 121
             S+YL +   ++ S  W V+  ++L++L   KDN  +    +G  RRF   K EWGF KF+
Sbjct:    71 SVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLIL---QGNERRFHSVKREWGFDKFI 127

Query:   122 SLDTLHE----YLANDTLVLGAEVFVIVS--TGRKECVSILKNPDGATTRTWKIPKFSAL 175
                T  +    YL  DT + GA+VFV     +GR EC+S++K+   ++   WKI  FS L
Sbjct:   128 PTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDAT-SSKHVWKIENFSKL 186

Query:   176 DDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLL 235
             D     S A+   +RKWK+  YP GT  G G  L+++L LVD    +    +F EF + +
Sbjct:   187 DKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRI 246

Query:   236 VDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTLIIE 284
              DQ +       + +KWFS      G  K++S+    Q +   ++ D  ++E
Sbjct:   247 FDQLQ-GRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVE 297

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 100/304 (32%), Positives = 160/304 (52%)

Query:     4 REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
             RE+R   P+   V + S+S +    + E +ES +FEA  YKWRLV Y NGNK D G+ +I
Sbjct:    52 RELREERPSSKIVTITSFSVI--KGRGEPYESSVFEAAGYKWRLVLYVNGNKNDGGNDHI 109

Query:    64 SLYLKIDGCNTCSDNWSVHVNYKLFVLY-KDNEFLAHRAEGPIRRFDHNKHEWGFGKFLS 122
             SLY +I+  N+    W V+V+ KLFV   K +++L    +G ++R+++ K EWGFG+ + 
Sbjct:   110 SLYARIEETNSLPLGWEVNVDLKLFVHNGKLHKYLTV-TDGLVKRYNNAKKEWGFGQLIP 168

Query:   123 LDTLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDN 178
               T +     YL  DT   GAE+F++    ++E V+ + NP      TWKI +FS L+D 
Sbjct:   169 RSTFYNANEGYLDQDTGSFGAEIFIVKPAQQQEKVTFISNPPN-NVFTWKILRFSTLEDK 227

Query:   179 PRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQ 238
               +S  + V++R W+L   P G   G+   L + L        A     +   +L L +Q
Sbjct:   228 FYYSDDFLVEDRYWRLGFNPKGDGGGRPHALPIFLFAQGHKANAVATNTWGAVNLRLKNQ 287

Query:   239 KRHSNSFKRQYSK-WFS-AQCYVLGHRKFISLTDLYQSD---VVGDTLIIELQFLSVSAV 293
             +  S + ++ YS  W+     Y +G    I L DL  +    +V D +I E + + VS  
Sbjct:   288 R--STNHRQIYSAAWYPIGSGYGVGVNNIILLADLNDASKGYLVNDAIIFEAEMVKVSIT 345

Query:   294 RLLN 297
              +++
Sbjct:   346 NIVS 349

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 95/303 (31%), Positives = 159/303 (52%)

Query:     4 REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
             RE+R+  P+   V + S+S +   ++ E +ES +FEA  YKWRLV Y  GN +   + +I
Sbjct:    53 RELRDERPSSKIVTITSFSVI--KDRGEPYESSIFEAAGYKWRLVLYVKGNPKGGINNHI 110

Query:    64 SLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSL 123
             SLY +I+   T    W V+V+ KLFV  +  +      +G ++R++  K EWGF + +SL
Sbjct:   111 SLYARIEETETLPRGWEVNVDLKLFVHNRKLKKYLSVTDGTVKRYNDAKKEWGFTQLISL 170

Query:   124 DTLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNP 179
              T +     YL  DT   GAE+F++  T ++E V+ + NP      TWKI +FS L+D  
Sbjct:   171 PTFYNANEGYLVQDTASFGAEIFIVNPTEKQEKVTFISNPPD-NVFTWKILRFSTLEDKF 229

Query:   180 RFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQK 239
              +S  + V +R W+L   P G+  G+   L + L        A     +   +L L +Q+
Sbjct:   230 YYSDDFLVGDRYWRLGFNPKGSGGGRPHALPIFLYAQGHKANAVVTNTWGAVNLRLKNQR 289

Query:   240 RHSNSFKRQYSK-WFSAQC-YVLGHRKFISLTDLYQSD---VVGDTLIIELQFLSVSAVR 294
               S++ K+ YS  W+  +  Y +G    I +++L  +    +V D +I E + + VS   
Sbjct:   290 --SSNHKQLYSAAWYPIRSDYGVGVNNIILMSELKDASKGYMVNDAIIFEAEMVKVSVTN 347

Query:   295 LLN 297
             +++
Sbjct:   348 IVS 350

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 96/299 (32%), Positives = 155/299 (51%)

Query:     7 RNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLY 66
             R+  P++  + + S+S +    + E +ES +FEAG YKWRLV Y NGN+ D G+ +ISLY
Sbjct:   125 RDERPSNKILTITSFSVI--KGRGEPYESSVFEAGGYKWRLVLYVNGNQNDGGNNHISLY 182

Query:    67 LKIDGCNTCSDNWSVHVNYKLFVLY-KDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSL-- 123
             ++I+   +    W V+V  KLFV   K  ++L  + +G ++R++  K EWG+GK + L  
Sbjct:   183 VRIEETESLPKGWEVNVELKLFVYNGKQRKYLIVK-DGIVKRYNDAKKEWGYGKLIPLTT 241

Query:   124 --DTLHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNPRF 181
               DT   YL  D    GAE+F   +   +E V+ + NP      TWKI  FS L+D   +
Sbjct:   242 FLDTNEGYLEQDIASFGAEIFSGTAVQVQEKVTFISNPPN-NVFTWKILHFSNLEDKFYY 300

Query:   182 SQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRH 241
             S  + V++R W+L   P GT  G+ + + + L        A     +   +L L +Q R 
Sbjct:   301 SDDFLVEDRYWRLGFNPKGTGDGRSQAIPIFLYAQGHKPNAVATNTWGAVNLRLKNQ-RS 359

Query:   242 SNSFKRQYSKWFSAQC-YVLGHRKFISLTDLYQSDV---VGDTLIIELQFLSVSAVRLL 296
             SN  +   + W+  +  Y +G    ISL +   +     V D++I E + + VS   ++
Sbjct:   360 SNHAQIYSAAWYPTRSDYGVGVNTIISLAEFNDASKGYSVNDSIIFEAEMVKVSVTNIV 418

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151054 AT5G26300 "AT5G26300" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 92/303 (30%), Positives = 156/303 (51%)

Query:     4 REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYI 63
             R +R+  P+   + + ++S +    ++E +ES +FEA  YKWRLV Y NGN  D G+ +I
Sbjct:    52 RVLRDERPSSKILTITNFSVI--KGRVEPYESSVFEAAGYKWRLVLYVNGNPNDSGNDHI 109

Query:    64 SLYLKIDGCNTCSDNWSVHVNYKLFVLY-KDNEFLAHRAEGPIRRFDHNKHEWGFGKFLS 122
             SLY++I+        W V+V+ KLF+   K N++LA  ++G ++ ++  K EWGFG+ + 
Sbjct:   110 SLYVRIEETEYLPRGWEVNVDLKLFIHNGKLNKYLAI-SDGTLKLYNDAKREWGFGQLIP 168

Query:   123 LDTLHE---YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNP 179
               T +    Y+  D    GAE+F++    ++E V+ + NP      TWKI  FS L+D  
Sbjct:   169 HVTFYNTYGYIEQDIGSFGAEIFIVKPAQQQEKVTFISNPP-TNVFTWKILHFSILEDKF 227

Query:   180 RFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQK 239
              +S  + V++R W+L   P G   G+   L + L        A     +   +L L +Q+
Sbjct:   228 YYSDDFLVEDRYWRLGFNPKGDGGGRPYALPIFLFAQGHKANAVATNTWGAANLRLKNQR 287

Query:   240 RHSNSFKRQYSK-WFS-AQCYVLGHRKFISLTDLY---QSDVVGDTLIIELQFLSVSAVR 294
               S + ++ Y+  W+     Y +G    I L DL    Q  +V + +I E   + VS   
Sbjct:   288 --STNHRQIYTAAWYPIGSGYGVGVNNIILLADLNDASQGYLVNNAIIFEAAMVKVSVTN 345

Query:   295 LLN 297
             +++
Sbjct:   346 IVS 348

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2056008 AT2G04190 "AT2G04190" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 90/302 (29%), Positives = 159/302 (52%)

Query:     4 REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAG-NYKWRLVFYPNGNKQDDGDGY 62
             R +R+ PP+H  + + ++S++   E  E +ES +FEA   +KWRL+ Y NGN+ D G  +
Sbjct:   112 RTLRDEPPSHRILTITNFSEIIGRE--EPYESSVFEAYFEHKWRLILYVNGNQNDGGSNH 169

Query:    63 ISLYLKIDGCNTCSDNWSVHVNYKLFVLY-KDNEFLAHRAEGPIRRFDHNKHEWGFGKFL 121
             ISLYL+ +  +  + + S++   KLFV   K +++L    +G  +R+++   EWG+GK +
Sbjct:   170 ISLYLRSEETDHLTYDGSINFVLKLFVYNGKQDKYLTV-TDGIQKRYNYKNKEWGYGKLI 228

Query:   122 SL----DTLHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDD 177
              L    DT   YL  DT   GAE+F+      +E V+ + NP      TWKI  FS L+D
Sbjct:   229 PLSTFLDTSQGYLEQDTASFGAEIFLCPPIQVQEKVTFISNPPN-NVFTWKILHFSTLED 287

Query:   178 NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237
                +S  + V++R W+L + P GT  G+ + + + L        A   + +   +L + +
Sbjct:   288 IVYYSDDFLVEDRYWRLGVNPKGTGDGRSQAIKIFLYAQGHKPNAVVSSTWGAVNLRVKN 347

Query:   238 QKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDL---YQSDVVGDTLIIELQFLSVSAVR 294
             Q+  ++S     + +     Y +G    +SL +L    +  +V D++I E + + VS   
Sbjct:   348 QRSSNHSQIYSAALYPIRNDYGVGVNTVLSLAELNDAVKEYLVNDSIIFEAEMVKVSVTN 407

Query:   295 LL 296
             ++
Sbjct:   408 IV 409

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 92/304 (30%), Positives = 148/304 (48%)

Query:     6 IRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISL 65
             +R  PP+ Y++++ S++ L +    E +ES  F  G Y W LV YP GNK D+G G+ISL
Sbjct:    61 LRERPPSSYSLKMESFNTLMKSVYTERYESRPFRVGRYNWTLVVYPKGNKNDNGTGHISL 120

Query:    66 YLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDT 125
             Y+ +D     S +  VHV+ + +V  K         +  + RF   K  WGF K L L T
Sbjct:   121 YVVLDNSTLTSQSEEVHVDLRFYVFNKKETKYFTIQDTDVWRFSAIKRMWGFSKVLPLIT 180

Query:   126 LHE----YLAN-DTLVLGAEVFVIVSTGRKECVSILKN-PDGATTRTWKIPKFSALDDNP 179
              +     YL + D    G +V +     + E  S+ K+ P  +   TW I  +S L  + 
Sbjct:   181 FNNLKNGYLYDVDHCEFGVDVIIPPFYEKSEVFSVTKSFP--SPRFTWYIQGYSTLPTD- 237

Query:   180 RFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLML--VDVLDPAPKRAVFAEFDLLLVD 237
               S+ + +  + W LR++  G  A +G+ L+L+L L   ++L   P   V+    L + +
Sbjct:   238 YLSEEFIIGGKSWNLRIFKNGFGAFEGKNLSLYLNLGPQELLKAKPYDKVYVRAKLRVPN 297

Query:   238 Q-KRHSNS-FKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTLIIELQFLSVSA 292
             Q    SN   +R    WFS Q    G+  F+ L+DL  S    +V D L++++    +S+
Sbjct:   298 QFGSQSNLVLERPLDNWFSPQTIGWGYADFMPLSDLRNSSKGFLVNDMLVVQVAMEEISS 357

Query:   293 VRLL 296
                L
Sbjct:   358 TNYL 361

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151049 AT5G26290 "AT5G26290" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 97/301 (32%), Positives = 153/301 (50%)

Query:     7 RNSPPAHYTVELNSYSKL-FRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISL 65
             R+  P+   + + S+S +  RPE    +ES +FEA  YKWRLV Y NGN++D G  ++SL
Sbjct:    48 RDDRPSDKILSITSFSIIRTRPEP---YESSVFEAVGYKWRLVLYVNGNEKDGGKDHVSL 104

Query:    66 YLKIDGCNTCSDNWSVHVNYKLFVLY-KDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLD 124
             Y KI    +    W V+V+ KLFV   K N++L       ++R+++   E G+G+ +   
Sbjct:   105 YAKIVETESLPVGWEVNVDLKLFVYNGKLNKYLIVT----VKRYNNATKELGYGQLIPQS 160

Query:   125 TLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNPR 180
             T ++    Y   DT   GAE++++    +KE V+ + NP      TWKI  FS L+D   
Sbjct:   161 TFYDGNDGYREQDTGTFGAEIYIVKPAQQKEKVTFISNPPD-NVFTWKILHFSTLEDKVY 219

Query:   181 FSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKR 240
              S  + V +R WKL L P      KG  + + L        A     +A  +L L +Q R
Sbjct:   220 QSNEFLVGDRYWKLGLNP------KGGLVPIFLYAQGFKANAVVTTTYAATNLRLKNQ-R 272

Query:   241 HSNSFKRQYSKWFSAQCYV-LGHRKFISLTDLYQSD---VVGDTLIIELQFLSVSAVRLL 296
              SN      + W+     + LG    I L+D+  +    VV D++IIE++ L+VS   ++
Sbjct:   273 SSNHVTTYTAYWYLIPSGLGLGVNT-IPLSDVKDASKGYVVNDSIIIEVEMLTVSVTNIV 331

Query:   297 N 297
             +
Sbjct:   332 S 332

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2098318 AT3G28220 "AT3G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 88/295 (29%), Positives = 150/295 (50%)

Query:     4 REI-RNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGD-G 61
             REI R  PP+ Y +++ S+ K       E +ES  FE+G Y W L+ YP GN ++     
Sbjct:    72 REIWRVIPPSTYCLKIESFIKFATSPNAEKYESRPFESGGYNWTLIVYPKGNIKEGAPLN 131

Query:    62 YISLYLKIDGCNTCSDNWSVHVNYKLFVLY-KDNEFLAHRAEGPIRRFDHNKHEWGFGKF 120
             Y+S+Y++ID     +    V+   K F+   K++++L ++ E   +RF   K  WG+G  
Sbjct:   132 YVSMYVQIDNSTLLNSPKEVYAEVKFFIYNRKEDKYLTYQ-ETDAKRFFLFKPYWGYGNV 190

Query:   121 LSL-DTLHE---YLAN-DTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSAL 175
                 D  +    +L + D ++ G +VFV     + E  S  K+      + W +P FS+L
Sbjct:   191 RPYTDVANPNAGWLFDGDNVLFGVDVFVTEVFNKWEVFSFTKSLHDRLYK-WTLPNFSSL 249

Query:   176 DDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLL 235
             +     S  + +  R W L++YP G   G+G  L+L+++ VDV  P  K  ++ +  L +
Sbjct:   250 EKQYYVSDKFVIGGRSWALKVYPSGDGEGQGNSLSLYVVAVDV-KPYDK--IYLKAKLRI 306

Query:   236 VDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTLIIELQF 287
             ++Q R S   +++   W S Q    G +KF+   DL  +    +V DTL +E++F
Sbjct:   307 INQ-RDSKHMEKKVESW-SDQANSWGFQKFVPFADLKDTSKGLLVNDTLKMEIEF 359

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

TAIR|locus:2151064 AT5G26320 "AT5G26320" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 89/305 (29%), Positives = 150/305 (49%)

Query:     4 REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGY- 62
             R +R   P+   V + S+S +    + E FES  FEA  YKWR + + NGN+ D   G+ 
Sbjct:    52 RVLREERPSSKIVTITSFSVI--KGRSEAFESSTFEAAGYKWRFMLFVNGNQNDPDGGHE 109

Query:    63 -ISLYLKIDGCNTCSDNWSVHVNYKLFVLY-KDNEFLAHRAEGPIRRFDHNKHEWGFGKF 120
              ++LY+ I    +    W V+V+ KLFV   K +++L   ++G ++R++  K  WGFG  
Sbjct:   110 NMALYVGIKETESFPRGWEVNVDLKLFVHNEKLHKYLTV-SDGTVKRYEAAKTYWGFGNL 168

Query:   121 LSLDTLHE----YLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALD 176
             +   TL +    Y+ +DTL  GAE+ ++    ++E ++ + NP      TWKI +FS L+
Sbjct:   169 IPRTTLLDPNEGYILHDTLSFGAEISIVNPAEKQEKITFISNPPD-NVFTWKILRFSTLE 227

Query:   177 DNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLV 236
             +   +S  + V +R W+L   P G    +   L++ L        A     +   +L L 
Sbjct:   228 NKFYYSDEFLVGDRYWRLGFNPKGYQGERPRALSIFLYAQGYKANAVITNTWGSVNLQLK 287

Query:   237 DQKRHSNSFKRQYSKWFSAQC-YVLGHRKFISLTDLYQSD---VVGDTLIIELQFLSVSA 292
             +Q R SN  +     W + +  Y +     I L DL  S    +V D +I E + + VS 
Sbjct:   288 NQ-RSSNHIQLYSEAWCAIRSGYGIEGNSIILLEDLQNSSKGYLVNDAIIFEAELVKVSV 346

Query:   293 VRLLN 297
               +++
Sbjct:   347 TNIVS 351

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_III0806 SubName- Full=Putative uncharacterized protein; (321 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	298
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	2e-22
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	1e-18
pfam00917	116	pfam00917, MATH, MATH domain	2e-14
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	7e-08
smart00061	95	smart00061, MATH, meprin and TRAF homology	3e-07
pfam00917	116	pfam00917, MATH, MATH domain	1e-06
smart00061	95	smart00061, MATH, meprin and TRAF homology	5e-05
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	3e-04
cd03773	132	cd03773, MATH_TRIM37, Tripartite motif containing	0.004

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 89.7 bits (223), Expect = 2e-22
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 11/132 (8%)

Query: 13  HYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGC 72
            +T ++ ++S+L    + E   S  FE G YKWR+  YPNG+   +   Y+SLYL++D  
Sbjct: 2   KHTWKIVNFSEL----EGESIYSPPFEVGGYKWRIRIYPNGD--GESGDYLSLYLELDKG 55

Query: 73  NTCSDNWSVHVNYKLFVLYKDNE-FLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHE--Y 129
            +  + WSV   + L ++ ++    L+         F      WGF KF+S D L +  Y
Sbjct: 56  ESDLEKWSVRAEFTLKLVNQNGGKSLSKS--FTHVFFSEKGSGWGFPKFISWDDLEDSYY 113

Query: 130 LANDTLVLGAEV 141
           L +D+L +  EV
Sbjct: 114 LVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 166 TWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKR 225
           TWKI  FS L+    +S  + V   KW++R+YP G     G++L+L+L L        K 
Sbjct: 4   TWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKW 62

Query: 226 AVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD-VVGDTLIIE 284
           +V AEF L LV+Q    +  K     +FS +    G  KFIS  DL  S  +V D+L IE
Sbjct: 63  SVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIE 122

Query: 285 LQF 287
           ++ 
Sbjct: 123 VEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 12/115 (10%)

Query: 31  EIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKID-GCNTCSDNWSVHVNYKLFV 89
             + S   E     WRL  Y NG       G++ LYL  + G       WS+   + L +
Sbjct: 12  NYYTSPYEERFGIPWRLRIYRNG-------GFLGLYLHCEKGEKDELLGWSIETEFTLKL 64

Query: 90  LYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHE-YLANDTLVLGAEVFV 143
           +  + + L  R +     F      +G+GKF+S D L   Y+ +DT+++ AEV +
Sbjct: 65  VSDNGKSLTKRNK--SHVFT-KPTGYGWGKFISWDDLENDYVVDDTIIIEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 19/122 (15%)

Query: 12  AHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLK--- 68
             +T  + ++S+L   +K     S  F+ G ++WR++ +P GN Q      +S+YL+   
Sbjct: 1   QSFTWRIKNWSEL--EKK---VHSPKFKCGGFEWRILLFPQGNSQTG---GVSIYLEPHP 52

Query: 69  -IDGCNTCSDNWSVHVNYKLFVLYKDNE---FLAHRAEGPIRRFDHNKHEWGFGKFLSLD 124
             +      ++WSV   + L V+    +    L++ A     RF+    +WGF +F+ L 
Sbjct: 53  EEEEKAPLDEDWSVCAQFAL-VISNPGDPSIQLSNVAH---HRFNAEDKDWGFTRFIELR 108

Query: 125 TL 126
            L
Sbjct: 109 KL 110

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%)

Query: 28  EKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKL 87
           E+ E + S   E  N  WRL  Y         +G++SLYL  +     S  WS+   + L
Sbjct: 13  EEGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTL 65

Query: 88  FVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFL 121
            ++ ++ + L+ + +     F      WGF KF+
Sbjct: 66  KLVSQNGKSLSKKDK---HVF-EKPSGWGFSKFI 95

Length = 95

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 15/121 (12%)

Query: 169 IPKFSALDDNPRFSQAYTVDER---KWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKR 225
           I  FS + +   +      +ER    W+LR+Y        G FL L+L   +  +     
Sbjct: 1   IKNFSKIKEGENYYT-SPYEERFGIPWRLRIYR------NGGFLGLYLH-CEKGEKDELL 52

Query: 226 A--VFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSDVVGDTLII 283
              +  EF L LV     S + + +   +     Y  G  KFIS  DL    VV DT+II
Sbjct: 53  GWSIETEFTLKLVSDNGKSLTKRNKSHVFTKPTGY--GWGKFISWDDLENDYVVDDTIII 110

Query: 284 E 284
           E
Sbjct: 111 E 111

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 166 TWKIPKFSAL-DDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPK 224
           +      S L +    FS +       W+L++Y       K  FL+L+L        + K
Sbjct: 3   SHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYR------KNGFLSLYLHCEKEECDSRK 56

Query: 225 RAVFAEFDLLLVDQ--KRHSNSFKRQYSK 251
            ++ AEF L LV Q  K  S   K  + K
Sbjct: 57  WSIEAEFTLKLVSQNGKSLSKKDKHVFEK 85

Length = 95

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 14/138 (10%)

Query: 14  YTVELNSYSKLFRPEKLEIFESGLFEAG---NYKWRLVFYPNGNKQDDGDGYISLYLKID 70
           Y   ++++S   R E  E+ +S  F +G     KW L   P G  ++  D Y+SLYL + 
Sbjct: 7   YMWTISNFS-FCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLSLYLLLV 64

Query: 71  GCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHEY- 129
            C        V   +K  +L    E           RF   K +WGF KF+  D L +  
Sbjct: 65  SCPKSE----VRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKFIRRDFLLDEA 119

Query: 130 ---LANDTLVLGAEVFVI 144
              L +D L L  EV V+
Sbjct: 120 NGLLPDDKLTLFCEVSVV 137

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 12/130 (9%)

Query: 164 TRTWKIPKFSALD--DNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDP 221
           + T+ +  FS L    +P +S    VD   W+L++YP G    +G FL++ L L   L  
Sbjct: 6   SATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGLGE 65

Query: 222 APKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSA-QCYVLGHRKFISLTDLYQS---DVV 277
           A K     E+ + +V Q   + + KR+++  F   +C+  G+ +F  L  L         
Sbjct: 66  ASK----YEYRVEMVHQANPTKNIKREFASDFEVGECW--GYNRFFRLDLLINEGYLLPE 119

Query: 278 GDTLIIELQF 287
            DTLI+    
Sbjct: 120 NDTLILRFSV 129

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs in vitro, however, it is unclear whether this is physiologically relevant. Eleven TRIM37 mutations have been associated with Mulibrey nanism so far. One mutation, Gly322Val, is located in the MATH domain and is the only mutation that does not affect the length of the protein. It results in the incorrect subcellular localization of TRIM37. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.94
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.94
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.94
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.94
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.93
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.93
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.92
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.92
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.92
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.91
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.91
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.91
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.9
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.9
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.9
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.9
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.9
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.89
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.89
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.88
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.88
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.87
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.84
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.84
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.8
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.8
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.78
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.78
smart00061	95	MATH meprin and TRAF homology.	99.74
smart00061	95	MATH meprin and TRAF homology.	99.7
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.47
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.44
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	99.0
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	97.96
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	97.79
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	97.66
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.17
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.65

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.94  E-value=2.4e-26  Score=179.42  Aligned_cols=130  Identities=29%  Similarity=0.462  Sum_probs=107.7

Q ss_pred             CCCcEEEEEECCcccccCCCCcceEEcCcEEeCCe---eEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEE
Q 047770            9 SPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNY---KWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNY   85 (298)
Q Consensus         9 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~---~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f   85 (298)
                      +...+|+|+|+|||++.+ +.++.+.|++|.+||+   +|+|++||+|+. +++.+|+||||++.+..    .++++|+|
T Consensus         2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~----~~~v~a~f   75 (139)
T cd03774           2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKF   75 (139)
T ss_pred             ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCC----CCcEEEEE
Confidence            567899999999999863 4578999999999984   999999999986 45678999999997643    36799999


Q ss_pred             EEEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEe
Q 047770           86 KLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIV  145 (298)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~  145 (298)
                      +|.|+||+++..........+.|.. ..+|||.+||++++|+    +||+||+|+|+|+|+|++
T Consensus        76 ~~~l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          76 KFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             EEEEEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            9999999876322222124567864 5789999999999994    899999999999999975

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.94  E-value=2.7e-26  Score=178.60  Aligned_cols=125  Identities=18%  Similarity=0.285  Sum_probs=105.0

Q ss_pred             eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCC--CCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEecCCCC
Q 047770          164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAA--GKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRH  241 (298)
Q Consensus       164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~--~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~~~~~  241 (298)
                      +|+|+|+|||.+ ++.+.|+.|.+||++|+|++||+|...  +..+++||||.|... ...+.|++.|+|+|+|+|| ..
T Consensus         4 ~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~-~~~~~w~i~a~~~~~l~~~-~~   80 (137)
T cd03772           4 TFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLRIINY-KD   80 (137)
T ss_pred             EEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCc-CCCCCCeEEEEEEEEEEcC-CC
Confidence            899999999998 578999999999999999999999654  235799999999764 4334899999999999999 43


Q ss_pred             -Ccceeeeeeeccccccccccccceeecccccc---CcccCCEEEEEEEEEEEE
Q 047770          242 -SNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQ---SDVVGDTLIIELQFLSVS  291 (298)
Q Consensus       242 -~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~---~fl~~D~l~i~~~v~i~~  291 (298)
                       +.+......+.|......|||++||+|++|++   .||+||+|+|||+|+|-.
T Consensus        81 ~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          81 DEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             CcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence             34555556678866667899999999999963   399999999999999854

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.94  E-value=1.3e-25  Score=174.78  Aligned_cols=127  Identities=19%  Similarity=0.371  Sum_probs=105.1

Q ss_pred             CcEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCC-CCCCeEEEEEEEccCCCCCCCCeEEEEEEEEE
Q 047770           11 PAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQD-DGDGYISLYLKIDGCNTCSDNWSVHVNYKLFV   89 (298)
Q Consensus        11 ~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~-~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~l   89 (298)
                      .++++|+|+|||.+     ++.++|++|.+||++|+|++||+|+... +..++|||||.|.+.. ....|++.|+|+|+|
T Consensus         2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l   75 (137)
T cd03772           2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRI   75 (137)
T ss_pred             CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEE
Confidence            57999999999998     4789999999999999999999996521 3458999999998754 344899999999999


Q ss_pred             EeCCCC-eeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEe
Q 047770           90 LYKDNE-FLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIV  145 (298)
Q Consensus        90 ~~~~~~-~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~  145 (298)
                      +||++. .....  ...+.|......|||.+||++++|+    +||+||+|+|+|+|+|-.
T Consensus        76 ~~~~~~~~~~~~--~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          76 INYKDDEPSFSR--RISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             EcCCCCcccEEE--eeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            999854 22221  1346787666899999999999993    999999999999998743

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.94  E-value=7.8e-26  Score=175.22  Aligned_cols=121  Identities=26%  Similarity=0.579  Sum_probs=102.6

Q ss_pred             EEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC----CCCCCeEEEEEEEE
Q 047770           13 HYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT----CSDNWSVHVNYKLF   88 (298)
Q Consensus        13 ~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~----~~~~w~~~~~f~~~   88 (298)
                      +|+|+|.|||.+     ++.+.|++|.+|||+|+|.+||+|+. .  .+||||||.+.+...    .+.+|.+.|+|+|.
T Consensus         2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~-~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~   73 (134)
T cd03775           2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNS-Q--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV   73 (134)
T ss_pred             cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCC-C--CCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence            589999999996     47899999999999999999999986 2  789999999976543    25689999999999


Q ss_pred             EEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc--------cceeCCEEEEEEEEE
Q 047770           89 VLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH--------EYLANDTLVLGAEVF  142 (298)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~--------~~l~dd~l~i~~~i~  142 (298)
                      |+||.++...... ...+.|+....+|||.+||++++|+        |||+||+|+|++.|+
T Consensus        74 l~n~~~~~~~~~~-~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          74 ISNPGDPSIQLSN-VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             EEcCCCCccceEc-cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            9999876433222 3568998777899999999999884        899999999999874

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.93  E-value=8e-26  Score=177.97  Aligned_cols=130  Identities=21%  Similarity=0.294  Sum_probs=103.9

Q ss_pred             cEEEEEECCcccccC-CCCcce--EEcCcEEe--CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCeEEEEE
Q 047770           12 AHYTVELNSYSKLFR-PEKLEI--FESGLFEA--GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWSVHVNY   85 (298)
Q Consensus        12 ~~~~w~I~nfs~~~~-~~~~~~--~~S~~f~~--~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~~~~f   85 (298)
                      |+|.|+|.+||.++. ++.|+.  ++|++|.+  |||+|+|++||||.. ++..+||||||+++++.. ...+|++.|+|
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~   79 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI   79 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence            689999999998653 455664  88999985  799999999999987 456789999999988654 35679999999


Q ss_pred             EEEEEeCCCCeeE----EEecCCeeeeCC-----CCCCccccceeeccccc--cceeCCEEEEEEEEE
Q 047770           86 KLFVLYKDNEFLA----HRAEGPIRRFDH-----NKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVF  142 (298)
Q Consensus        86 ~~~l~~~~~~~~~----~~~~~~~~~F~~-----~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~  142 (298)
                      +|.|+||.++...    .........|..     ...+|||.+||++++|+  +||+||+|+|+|+|+
T Consensus        80 ~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~  147 (147)
T cd03776          80 TLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence            9999999865221    111112345752     34679999999999999  899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=3.6e-25  Score=178.76  Aligned_cols=134  Identities=18%  Similarity=0.210  Sum_probs=107.3

Q ss_pred             cCCCcEEEEEECCcccccC-CCCcc--eEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCeE
Q 047770            8 NSPPAHYTVELNSYSKLFR-PEKLE--IFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWSV   81 (298)
Q Consensus         8 ~~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~   81 (298)
                      ....|+|.|+|.+||..+. .+.|+  .++|++|.+|  ||+|+|++||||.. .+..+||||||.++++.. ....|++
T Consensus        35 ~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP~  113 (186)
T cd03777          35 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF  113 (186)
T ss_pred             cccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCce
Confidence            4557999999999999864 44455  8999999999  99999999999987 456789999999998753 3457999


Q ss_pred             EEEEEEEEEeCCCCe----eEEEecCCeeeeC-CC---CCCccccceeeccccc--cceeCCEEEEEEEEE
Q 047770           82 HVNYKLFVLYKDNEF----LAHRAEGPIRRFD-HN---KHEWGFGKFLSLDTLH--EYLANDTLVLGAEVF  142 (298)
Q Consensus        82 ~~~f~~~l~~~~~~~----~~~~~~~~~~~F~-~~---~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~  142 (298)
                      .++++|.|++|.+..    ...........|. +.   +..||+.+||++++|+  +||+||+|.|+|.|.
T Consensus       114 ~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~  184 (186)
T cd03777         114 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD  184 (186)
T ss_pred             eEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEe
Confidence            999999999997531    1111111234575 32   4579999999999998  899999999999885

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.93  E-value=3.5e-25  Score=175.02  Aligned_cols=129  Identities=21%  Similarity=0.354  Sum_probs=103.7

Q ss_pred             cEEEEEECCcccccC---CCCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEEEEE
Q 047770           12 AHYTVELNSYSKLFR---PEKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVHVNY   85 (298)
Q Consensus        12 ~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~f   85 (298)
                      |+|.|+|.+||.++.   .+.++.++|++|.+|  ||+|+|++||+|.. ++..+||||||++.++..+ ..+|++.|+|
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~   79 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI   79 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence            689999999999864   245679999999999  99999999999986 3456899999999887543 4679999999


Q ss_pred             EEEEEeCCCC--eeE----EEecCCeeeeC-----CCCCCccccceeeccccc--cceeCCEEEEEEEE
Q 047770           86 KLFVLYKDNE--FLA----HRAEGPIRRFD-----HNKHEWGFGKFLSLDTLH--EYLANDTLVLGAEV  141 (298)
Q Consensus        86 ~~~l~~~~~~--~~~----~~~~~~~~~F~-----~~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i  141 (298)
                      +|.|+||.++  ...    .......+.|.     ....+|||.+||++++|+  +||+||+|+|+|+|
T Consensus        80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v  148 (149)
T cd00270          80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEV  148 (149)
T ss_pred             EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence            9999999874  111    11111233454     135789999999999998  89999999999997

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.93  E-value=4.9e-25  Score=170.74  Aligned_cols=120  Identities=20%  Similarity=0.330  Sum_probs=101.7

Q ss_pred             eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCC-----CCCCeEEEEEEEEEecC
Q 047770          164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDP-----APKRAVFAEFDLLLVDQ  238 (298)
Q Consensus       164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~-----~~~~~~~~~f~~~l~~~  238 (298)
                      +|+|+|.+||.+ ++.+.|++|.+||++|+|.+||+|...  .+|+|+||.+... +.     .++|++.|+|+|+|+||
T Consensus         2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~-~~~~~~~~~~~~v~a~f~~~l~n~   77 (134)
T cd03775           2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPE-EEEKAPLDEDWSVCAQFALVISNP   77 (134)
T ss_pred             cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCc-ccccccCCCCCeEEEEEEEEEEcC
Confidence            799999999996 478999999999999999999999764  6799999999765 33     23899999999999999


Q ss_pred             CCCC-cceeeeeeeccccccccccccceeecccccc-------CcccCCEEEEEEEEE
Q 047770          239 KRHS-NSFKRQYSKWFSAQCYVLGHRKFISLTDLYQ-------SDVVGDTLIIELQFL  288 (298)
Q Consensus       239 ~~~~-~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~-------~fl~~D~l~i~~~v~  288 (298)
                       .++ .+......+.|.....+|||.+||++++|++       .||+||+|+|+|.|.
T Consensus        78 -~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          78 -GDPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             -CCCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence             443 3455556788987667899999999999983       299999999999873

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=6.7e-25  Score=171.17  Aligned_cols=129  Identities=19%  Similarity=0.246  Sum_probs=104.8

Q ss_pred             cEEEEEECCcccccC-CCCcc--eEEcCcE--EeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEEEEE
Q 047770           12 AHYTVELNSYSKLFR-PEKLE--IFESGLF--EAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVHVNY   85 (298)
Q Consensus        12 ~~~~w~I~nfs~~~~-~~~~~--~~~S~~f--~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~f   85 (298)
                      |++.|+|.+|+.++. .+.|+  .+.|++|  .++||+|+|++||||.. .+..+||||||.++++..+ ...|++++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~   79 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV   79 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence            689999999999864 45566  8999999  89999999999999988 4567899999999986443 4679999999


Q ss_pred             EEEEEeCCCCee----EEEecCCeeeeCCC----CCCccccceeeccccc----cceeCCEEEEEEEE
Q 047770           86 KLFVLYKDNEFL----AHRAEGPIRRFDHN----KHEWGFGKFLSLDTLH----EYLANDTLVLGAEV  141 (298)
Q Consensus        86 ~~~l~~~~~~~~----~~~~~~~~~~F~~~----~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i  141 (298)
                      +|+|++|.+...    +...+...+.|...    +..||+.+||++++|+    +||+||+|+|+|.|
T Consensus        80 tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          80 TLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            999999975522    22111124568643    4579999999999997    79999999999976

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.92  E-value=7.6e-25  Score=173.33  Aligned_cols=129  Identities=19%  Similarity=0.325  Sum_probs=103.4

Q ss_pred             cEEEEEECCcccccCC--C-CcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCC-CCCeEEEEE
Q 047770           12 AHYTVELNSYSKLFRP--E-KLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCS-DNWSVHVNY   85 (298)
Q Consensus        12 ~~~~w~I~nfs~~~~~--~-~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~~~~f   85 (298)
                      |.|.|+|.+||.++..  . .++.+.|++|.+|  ||+|+|++||||.. .+..+|||+||+++++..+. ..|+++++|
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~   79 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI   79 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence            6899999999988642  2 4689999999999  99999999999987 45678999999999865433 589999999


Q ss_pred             EEEEEeCCCC--e--eEE----EecCCeeeeCC--------CCCCccccceeeccccc--cceeCCEEEEEEEE
Q 047770           86 KLFVLYKDNE--F--LAH----RAEGPIRRFDH--------NKHEWGFGKFLSLDTLH--EYLANDTLVLGAEV  141 (298)
Q Consensus        86 ~~~l~~~~~~--~--~~~----~~~~~~~~F~~--------~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i  141 (298)
                      +|+|+||.+.  .  ...    ........|..        .+.+||+.+||++++|+  +||+||+|+|+|+|
T Consensus        80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v  153 (154)
T cd03781          80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASV  153 (154)
T ss_pred             EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEe
Confidence            9999999764  1  111    11112344542        34579999999999999  99999999999987

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.92  E-value=1.1e-24  Score=168.73  Aligned_cols=125  Identities=25%  Similarity=0.421  Sum_probs=103.0

Q ss_pred             CCCcEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEE
Q 047770            9 SPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLF   88 (298)
Q Consensus         9 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~   88 (298)
                      +..++++|+|.|||.+..  .++.++|++|.+|||+|+|.+||+|+. ++..+||||||.+.++.    .|.+.++|+|+
T Consensus         2 ~~~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~----~~~~~~~~~l~   74 (132)
T cd03773           2 PPYDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGL----GEASKYEYRVE   74 (132)
T ss_pred             CCCcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCC----CCceeEEEEEE
Confidence            457789999999999852  468999999999999999999999987 45678999999997642    36788999999


Q ss_pred             EEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc--cceeC--CEEEEEEEEE
Q 047770           89 VLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH--EYLAN--DTLVLGAEVF  142 (298)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~--~~l~d--d~l~i~~~i~  142 (298)
                      |+||.++...... ...+.|.. ..+|||.+||++++|+  |||.|  |+|+|+|.|+
T Consensus        75 llnq~~~~~~~~~-~~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          75 MVHQANPTKNIKR-EFASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR  130 (132)
T ss_pred             EEcCCCCccceEE-eccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence            9999544222222 24567865 4779999999999997  99999  9999999986

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=1.6e-24  Score=168.25  Aligned_cols=129  Identities=22%  Similarity=0.274  Sum_probs=102.0

Q ss_pred             cEEEEEECCcccccC-C--CCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCeEEEEE
Q 047770           12 AHYTVELNSYSKLFR-P--EKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWSVHVNY   85 (298)
Q Consensus        12 ~~~~w~I~nfs~~~~-~--~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~~~~f   85 (298)
                      |++.|+|.||++..+ .  +....++||+|..+  ||+|+|++||||.. .+..+|+||||+++++.. ....|++++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~   79 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV   79 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence            689999999997654 2  22347999999875  99999999999988 456889999999998643 34579999999


Q ss_pred             EEEEEeCCCCee---EEEecCCeeeeC----CCCCCccccceeeccccc----cceeCCEEEEEEEE
Q 047770           86 KLFVLYKDNEFL---AHRAEGPIRRFD----HNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEV  141 (298)
Q Consensus        86 ~~~l~~~~~~~~---~~~~~~~~~~F~----~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i  141 (298)
                      +|+|++|.+...   ........+.|.    ..+..||+.+||++++|+    +||+||+++|+|+|
T Consensus        80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779          80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             EEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            999999976422   221101135686    344579999999999997    79999999999987

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.92  E-value=2.7e-24  Score=166.49  Aligned_cols=124  Identities=27%  Similarity=0.471  Sum_probs=103.8

Q ss_pred             CCCCceeEEEeCCcccCC--CCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEe
Q 047770          159 PDGATTRTWKIPKFSALD--DNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLV  236 (298)
Q Consensus       159 p~~~~~~~w~i~~fs~l~--~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~  236 (298)
                      |+++ +++|+|.+||.+.  ++.+.|+.|.++|++|+|++||+|...+.++|+|+||++..+ .   .+.+.++|+|+|+
T Consensus         2 ~~~~-~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~-~---~~~~~~~~~l~ll   76 (132)
T cd03773           2 PPYD-SATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG-L---GEASKYEYRVEMV   76 (132)
T ss_pred             CCCc-ccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC-C---CCceeEEEEEEEE
Confidence            7787 9999999999985  368999999999999999999999877678899999998763 1   3678889999999


Q ss_pred             cCCCCCcceeeeeeeccccccccccccceeeccccccC-cccC--CEEEEEEEEE
Q 047770          237 DQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQS-DVVG--DTLIIELQFL  288 (298)
Q Consensus       237 ~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~-fl~~--D~l~i~~~v~  288 (298)
                      ||....++......+.|.. ..+|||.+||++++|++. ||+|  |+|+|+|.|+
T Consensus        77 nq~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          77 HQANPTKNIKREFASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR  130 (132)
T ss_pred             cCCCCccceEEeccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence            9921223555555677865 457999999999999876 9999  9999999986

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.91  E-value=5.8e-24  Score=168.06  Aligned_cols=129  Identities=19%  Similarity=0.376  Sum_probs=101.7

Q ss_pred             CcEEEEEECCccccc-CCCCcceEEcCcE-EeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCe-EEEEEE
Q 047770           11 PAHYTVELNSYSKLF-RPEKLEIFESGLF-EAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWS-VHVNYK   86 (298)
Q Consensus        11 ~~~~~w~I~nfs~~~-~~~~~~~~~S~~f-~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~-~~~~f~   86 (298)
                      ++.|.|+|.|||.++ +.+.++.++|++| .++||+|+|++||||.. . ..+||||||+++++.. ..++|+ +.++++
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t   78 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQAT   78 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEE
Confidence            468999999999996 4677889999999 89999999999999998 4 6789999999987644 367899 589999


Q ss_pred             EEEEeCCCC-------eeEEEecCCe-------eeeCC-----------------CCCCccccceeeccccc--cceeCC
Q 047770           87 LFVLYKDNE-------FLAHRAEGPI-------RRFDH-----------------NKHEWGFGKFLSLDTLH--EYLAND  133 (298)
Q Consensus        87 ~~l~~~~~~-------~~~~~~~~~~-------~~F~~-----------------~~~~~G~~~fi~~~~l~--~~l~dd  133 (298)
                      |+|++|...       ..+...+...       ..|+.                 .+.+|||.+||++++|.  +||+||
T Consensus        79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~d  158 (167)
T cd03771          79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGD  158 (167)
T ss_pred             EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCC
Confidence            999999742       1111111100       01221                 23479999999999999  899999


Q ss_pred             EEEEEEEE
Q 047770          134 TLVLGAEV  141 (298)
Q Consensus       134 ~l~i~~~i  141 (298)
                      +|.|++++
T Consensus       159 tl~i~~~~  166 (167)
T cd03771         159 DLIILLDF  166 (167)
T ss_pred             EEEEEEEe
Confidence            99999886

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.91  E-value=1.8e-23  Score=163.96  Aligned_cols=133  Identities=17%  Similarity=0.264  Sum_probs=105.2

Q ss_pred             cCCCcEEEEEECCcccccCC---CCcceEEcCcEEe--CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCC-CCCeE
Q 047770            8 NSPPAHYTVELNSYSKLFRP---EKLEIFESGLFEA--GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCS-DNWSV   81 (298)
Q Consensus         8 ~~~~~~~~w~I~nfs~~~~~---~~~~~~~S~~f~~--~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~   81 (298)
                      ....|++.|+|.||+++...   +....++||+|..  +||+|+|++||||++ .+.+.|||||++++++..++ ++|++
T Consensus        15 ~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~WPf   93 (164)
T cd03778          15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPF   93 (164)
T ss_pred             cccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccCCce
Confidence            45689999999999998642   2234799999976  489999999999987 45677999999999998876 89999


Q ss_pred             EEEEEEEEEeCCCCee---EEEecCCeeeeC----CCCCCccccceeeccccc---cceeCCEEEEEEEE
Q 047770           82 HVNYKLFVLYKDNEFL---AHRAEGPIRRFD----HNKHEWGFGKFLSLDTLH---EYLANDTLVLGAEV  141 (298)
Q Consensus        82 ~~~f~~~l~~~~~~~~---~~~~~~~~~~F~----~~~~~~G~~~fi~~~~l~---~~l~dd~l~i~~~i  141 (298)
                      ..+++|+|+||++...   +...+.....|.    ..+.+|||..|+++++|.   +||+||+|.|+|.|
T Consensus        94 ~~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~V  163 (164)
T cd03778          94 NQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIV  163 (164)
T ss_pred             eeEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEE
Confidence            9999999999976411   111111112352    234579999999999996   89999999999976

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.91  E-value=1.1e-23  Score=164.29  Aligned_cols=122  Identities=25%  Similarity=0.358  Sum_probs=99.8

Q ss_pred             eeEEEeCCcccCC---CCCcccceeeeCCe---eEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEec
Q 047770          164 TRTWKIPKFSALD---DNPRFSQAYTVDER---KWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD  237 (298)
Q Consensus       164 ~~~w~i~~fs~l~---~~~~~S~~f~~~g~---~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~  237 (298)
                      +|+|+|.+||.+.   ++.+.|++|.+||+   +|+|++||+|...+..+|+|+||++... .   .+++.|+|+|.|+|
T Consensus         6 ~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~-~---~~~v~a~f~~~l~n   81 (139)
T cd03774           6 CYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-P---KSEVRAKFKFSILN   81 (139)
T ss_pred             EEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC-C---CCcEEEEEEEEEEe
Confidence            8999999999864   46899999999985   9999999999876667899999998753 1   46799999999999


Q ss_pred             CCCCCcce--eeeeeeccccccccccccceeeccccccC---cccCCEEEEEEEEEEEE
Q 047770          238 QKRHSNSF--KRQYSKWFSAQCYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSVS  291 (298)
Q Consensus       238 ~~~~~~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~~  291 (298)
                      | .+....  .....+.|.. ..+|||.+||++++|+++   ||+||+|+|+|+|+|++
T Consensus        82 ~-~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          82 A-KGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             c-CCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            9 443321  2223466754 467999999999999743   99999999999999975

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.90  E-value=1.6e-23  Score=163.49  Aligned_cols=122  Identities=21%  Similarity=0.338  Sum_probs=102.1

Q ss_pred             eeEEEeCCcccCC-----CC--Cccccee--eeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770          164 TRTWKIPKFSALD-----DN--PRFSQAY--TVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD  232 (298)
Q Consensus       164 ~~~w~i~~fs~l~-----~~--~~~S~~f--~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~  232 (298)
                      .++|+|.+|+.++     ++  .+.|+.|  .++||+|+|++||||...+.++|+||||+++++ +.++  .|++.++++
T Consensus         2 ~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g-~~D~~l~wp~~~~~t   80 (148)
T cd03780           2 KLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRG-EFDSLLQWPFRQRVT   80 (148)
T ss_pred             EEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecC-ccccccCcceEEEEE
Confidence            6899999999975     23  6999999  899999999999999987788999999999988 6666  999999999


Q ss_pred             EEEecCCCCC-cceeee--e---eeccccc----cccccccceeecccccc---CcccCCEEEEEEEE
Q 047770          233 LLLVDQKRHS-NSFKRQ--Y---SKWFSAQ----CYVLGHRKFISLTDLYQ---SDVVGDTLIIELQF  287 (298)
Q Consensus       233 ~~l~~~~~~~-~~~~~~--~---~~~F~~~----~~~~G~~~fi~~~~L~~---~fl~~D~l~i~~~v  287 (298)
                      |.|++| ... .++...  .   ...|+.+    +.+||+++||++++|++   .||.||+++|+|.|
T Consensus        81 fsLlDq-~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          81 LMLLDQ-SGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEECC-CCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            999999 322 231111  1   3568665    55799999999999986   49999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.90  E-value=7.9e-24  Score=167.26  Aligned_cols=123  Identities=25%  Similarity=0.377  Sum_probs=100.5

Q ss_pred             eeEEEeCCcccCC-------CCCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770          164 TRTWKIPKFSALD-------DNPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD  232 (298)
Q Consensus       164 ~~~w~i~~fs~l~-------~~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~  232 (298)
                      +|+|+|.+||.++       .+.+.|+.|.++  |++|+|++||+|..++.++|+||||++.++ ..+.  +|++.++|+
T Consensus         2 ~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~-~~d~~~~w~~~~~~~   80 (149)
T cd00270           2 VLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKG-EYDALLEWPFRGKIT   80 (149)
T ss_pred             EEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEecc-CCCccccCCccceEE
Confidence            7999999999974       257899999999  999999999999876677899999999887 5442  899999999


Q ss_pred             EEEecCCCCC---cceeeee-----eeccc-----cccccccccceeeccccccC-cccCCEEEEEEEEE
Q 047770          233 LLLVDQKRHS---NSFKRQY-----SKWFS-----AQCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFL  288 (298)
Q Consensus       233 ~~l~~~~~~~---~~~~~~~-----~~~F~-----~~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~  288 (298)
                      |.|+|| .++   ++.....     .+.|.     ....+|||.+||++++|+++ ||+||+|+|+|+|.
T Consensus        81 ~~l~d~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQ-SDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECC-CCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence            999999 442   3322221     23454     13467999999999999986 99999999999984

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.90  E-value=2.7e-23  Score=167.81  Aligned_cols=126  Identities=22%  Similarity=0.317  Sum_probs=103.7

Q ss_pred             CCceeEEEeCCcccCC-----CC--CcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEE
Q 047770          161 GATTRTWKIPKFSALD-----DN--PRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFA  229 (298)
Q Consensus       161 ~~~~~~w~i~~fs~l~-----~~--~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~  229 (298)
                      .+ .|+|+|.+||..+     ++  .+.|+.|.++  ||+|+|++||||.+.+.++|+|+||+++++ +.++  .|++.+
T Consensus        38 ~G-~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~g-e~D~~L~WP~~~  115 (186)
T cd03777          38 NG-VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRG-EYDALLPWPFKQ  115 (186)
T ss_pred             ce-EEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecC-CcccccCCceeE
Confidence            45 9999999999864     13  6999999999  999999999999987788999999999988 6665  899999


Q ss_pred             EEEEEEecCCCCC-cceeee-----eeeccccc----cccccccceeeccccccC-cccCCEEEEEEEEEE
Q 047770          230 EFDLLLVDQKRHS-NSFKRQ-----YSKWFSAQ----CYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLS  289 (298)
Q Consensus       230 ~f~~~l~~~~~~~-~~~~~~-----~~~~F~~~----~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i  289 (298)
                      +++|.|++| .+. .+....     ....|..+    +.+||+++||++++|++. ||+||+++|+|.|..
T Consensus       116 ~~tfsLlDQ-~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~  185 (186)
T cd03777         116 KVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT  185 (186)
T ss_pred             EEEEEEEcC-CCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence            999999999 321 222111     12457532    357999999999999988 999999999998863

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.90  E-value=1e-23  Score=165.94  Aligned_cols=123  Identities=23%  Similarity=0.260  Sum_probs=98.9

Q ss_pred             eeEEEeCCcccCC-----CC--Ccccceeee--CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770          164 TRTWKIPKFSALD-----DN--PRFSQAYTV--DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD  232 (298)
Q Consensus       164 ~~~w~i~~fs~l~-----~~--~~~S~~f~~--~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~  232 (298)
                      .|+|+|.+||.++     ++  .+.|+.|.+  +||+|+|++||+|...+..+|+|+||++.++ +.+.  +|++.++|+
T Consensus         2 ~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~-~~d~~l~wpv~a~~~   80 (147)
T cd03776           2 IYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQG-ENDSHLDWPFQGTIT   80 (147)
T ss_pred             EEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEecc-CCCcccCCcccceeE
Confidence            7999999999754     23  378999985  7999999999999887778899999999886 5433  899999999


Q ss_pred             EEEecCCCCC-cceeee-----eeecccc-----ccccccccceeeccccccC-cccCCEEEEEEEEE
Q 047770          233 LLLVDQKRHS-NSFKRQ-----YSKWFSA-----QCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFL  288 (298)
Q Consensus       233 ~~l~~~~~~~-~~~~~~-----~~~~F~~-----~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~  288 (298)
                      |+|+|| .+. +++...     ....|..     .+.+|||.+||++++|++. ||+||+|+|+|+|.
T Consensus        81 ~~lldq-~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQ-SEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECC-CcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence            999999 432 232211     1245753     2357999999999999987 99999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.90  E-value=3.1e-23  Score=160.98  Aligned_cols=123  Identities=24%  Similarity=0.275  Sum_probs=99.9

Q ss_pred             eeEEEeCCcccCC-----C--CCcccceeee--CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770          164 TRTWKIPKFSALD-----D--NPRFSQAYTV--DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD  232 (298)
Q Consensus       164 ~~~w~i~~fs~l~-----~--~~~~S~~f~~--~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~  232 (298)
                      .++|+|.||++..     +  ..++|+.|..  .||+|+|++||||.+.+.++|+|+||+++++ +.++  .|++.++++
T Consensus         2 ~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g-~~D~~l~wpv~~~~t   80 (147)
T cd03779           2 TFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKG-EYDALLPWPFRHKVT   80 (147)
T ss_pred             eEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecC-CcccccCcceEEEEE
Confidence            6899999999754     1  3689999987  4999999999999987788999999999987 5555  899999999


Q ss_pred             EEEecCCCCCccee--eee---eeccc----cccccccccceeecccccc---CcccCCEEEEEEEEE
Q 047770          233 LLLVDQKRHSNSFK--RQY---SKWFS----AQCYVLGHRKFISLTDLYQ---SDVVGDTLIIELQFL  288 (298)
Q Consensus       233 ~~l~~~~~~~~~~~--~~~---~~~F~----~~~~~~G~~~fi~~~~L~~---~fl~~D~l~i~~~v~  288 (298)
                      |.|++| .+..+..  ...   .+.|+    ..+.+||+++||++++|++   .||+||+++|+|+|.
T Consensus        81 fsLlDq-~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~  147 (147)
T cd03779          81 FMLLDQ-NNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD  147 (147)
T ss_pred             EEEECC-CCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence            999999 4323321  111   25686    3345799999999999987   499999999999983

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.89  E-value=4e-23  Score=163.26  Aligned_cols=125  Identities=23%  Similarity=0.366  Sum_probs=99.0

Q ss_pred             CCceeEEEeCCcccCC-C----CCccccee-eeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCe-EEEEE
Q 047770          161 GATTRTWKIPKFSALD-D----NPRFSQAY-TVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRA-VFAEF  231 (298)
Q Consensus       161 ~~~~~~w~i~~fs~l~-~----~~~~S~~f-~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~-~~~~f  231 (298)
                      |+ +|+|+|.+||.++ +    ..+.|+.| .++||+|+|++||+|... .++|+||||+++++ +.++  +|+ +.+++
T Consensus         1 cp-~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g-~~d~~L~WP~v~a~~   77 (167)
T cd03771           1 CP-EAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSG-ENDDVLEWPCPNRQA   77 (167)
T ss_pred             CC-eEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecC-CccccccCcceeEEE
Confidence            45 8999999999985 2    47899998 999999999999999987 78899999999987 5554  899 58999


Q ss_pred             EEEEecCCC---CCcceeeeee------------ecccc-----------------ccccccccceeeccccccC-cccC
Q 047770          232 DLLLVDQKR---HSNSFKRQYS------------KWFSA-----------------QCYVLGHRKFISLTDLYQS-DVVG  278 (298)
Q Consensus       232 ~~~l~~~~~---~~~~~~~~~~------------~~F~~-----------------~~~~~G~~~fi~~~~L~~~-fl~~  278 (298)
                      +|+|++|..   ...+......            ..|++                 .+.+|||++||++++|+++ ||+|
T Consensus        78 t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~  157 (167)
T cd03771          78 TMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKG  157 (167)
T ss_pred             EEEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcC
Confidence            999999931   1123222110            11322                 2247999999999999998 9999


Q ss_pred             CEEEEEEEEE
Q 047770          279 DTLIIELQFL  288 (298)
Q Consensus       279 D~l~i~~~v~  288 (298)
                      |+|.|+++++
T Consensus       158 dtl~i~~~~~  167 (167)
T cd03771         158 DDLIILLDFE  167 (167)
T ss_pred             CEEEEEEEeC
Confidence            9999999874

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.89  E-value=8e-23  Score=161.78  Aligned_cols=123  Identities=20%  Similarity=0.287  Sum_probs=100.5

Q ss_pred             eeEEEeCCcccCC----C---CCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770          164 TRTWKIPKFSALD----D---NPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD  232 (298)
Q Consensus       164 ~~~w~i~~fs~l~----~---~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~  232 (298)
                      .|.|+|.+||.++    .   +.+.|+.|.++  ||+|+|++||+|...+.++|+|+||+++++ +.++  .|++.++++
T Consensus         2 ~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~g-e~d~~l~wp~~a~~~   80 (154)
T cd03781           2 TLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPG-EYDNLLEWPFSHRIT   80 (154)
T ss_pred             EEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecC-CcccccCCceeeEEE
Confidence            7899999999864    1   46899999999  999999999999887778899999999987 5544  899999999


Q ss_pred             EEEecCCCCC--c---ceeee-----eeecccc--------ccccccccceeeccccccC-cccCCEEEEEEEEE
Q 047770          233 LLLVDQKRHS--N---SFKRQ-----YSKWFSA--------QCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFL  288 (298)
Q Consensus       233 ~~l~~~~~~~--~---~~~~~-----~~~~F~~--------~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~  288 (298)
                      |+|++| .++  .   +....     ....|+.        .+.+||+.+||++++|++. ||+||+|+|+|+|.
T Consensus        81 ~~llDq-~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~  154 (154)
T cd03781          81 FTLLDQ-SDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEECC-CCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence            999999 432  1   22111     1244553        3457999999999999977 99999999999883

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.88  E-value=4e-22  Score=156.38  Aligned_cols=124  Identities=21%  Similarity=0.328  Sum_probs=104.0

Q ss_pred             CCceeEEEeCCcccCCC-------CCcccceeee--CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEE
Q 047770          161 GATTRTWKIPKFSALDD-------NPRFSQAYTV--DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFA  229 (298)
Q Consensus       161 ~~~~~~w~i~~fs~l~~-------~~~~S~~f~~--~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~  229 (298)
                      .+ +++|+|+||+++..       ..++||.|..  +||+|+|++||+|++.+++.|||+|++++++ +.++  +|++..
T Consensus        18 ~g-~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~G-e~D~~L~WPf~~   95 (164)
T cd03778          18 DG-VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKG-PNDALLRWPFNQ   95 (164)
T ss_pred             CC-EEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecC-CcCcccCCceee
Confidence            45 99999999998652       2688888875  5899999999999988889999999999999 7777  999999


Q ss_pred             EEEEEEecCCCCCcceeeeee-----ecccc----ccccccccceeeccccccC--cccCCEEEEEEEE
Q 047770          230 EFDLLLVDQKRHSNSFKRQYS-----KWFSA----QCYVLGHRKFISLTDLYQS--DVVGDTLIIELQF  287 (298)
Q Consensus       230 ~f~~~l~~~~~~~~~~~~~~~-----~~F~~----~~~~~G~~~fi~~~~L~~~--fl~~D~l~i~~~v  287 (298)
                      +++|.|+|| .+.+|+.....     ..|++    .+.+||++.|++.++|++.  ||+||+|.|+|.|
T Consensus        96 ~itl~llDQ-~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~V  163 (164)
T cd03778          96 KVTLMLLDQ-NNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIV  163 (164)
T ss_pred             EEEEEEECC-CCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEE
Confidence            999999999 56666654432     24533    3457999999999999863  9999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.88  E-value=7.4e-22  Score=150.87  Aligned_cols=122  Identities=36%  Similarity=0.591  Sum_probs=103.9

Q ss_pred             eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC-CCeEEEEEEEEEecCCCCC
Q 047770          164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP-KRAVFAEFDLLLVDQKRHS  242 (298)
Q Consensus       164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~-~~~~~~~f~~~l~~~~~~~  242 (298)
                      +|+|+|.+|+...++.+.|+.|.++|++|+|++||+|... ..+++||||+|.+. .... .|++.++|+|+|+++ .++
T Consensus         2 ~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~   78 (126)
T cd00121           2 KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKG-ESDLEKWSVRAEFTLKLVNQ-NGG   78 (126)
T ss_pred             EEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCC-CCCCCCCcEEEEEEEEEECC-CCC
Confidence            7999999999855688999999999999999999999765 57799999999876 4433 799999999999999 446


Q ss_pred             cceeeeeeeccc-cccccccccceeeccccccCc-ccCCEEEEEEEEE
Q 047770          243 NSFKRQYSKWFS-AQCYVLGHRKFISLTDLYQSD-VVGDTLIIELQFL  288 (298)
Q Consensus       243 ~~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~f-l~~D~l~i~~~v~  288 (298)
                      ++......+.|. ....+|||++||+|++|++.+ ++||+|+|+|+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~  126 (126)
T cd00121          79 KSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK  126 (126)
T ss_pred             ccceEeccCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence            666666666663 445789999999999999985 9999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.87  E-value=3.8e-21  Score=146.91  Aligned_cols=122  Identities=34%  Similarity=0.642  Sum_probs=100.6

Q ss_pred             cEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEEEEe
Q 047770           12 AHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLY   91 (298)
Q Consensus        12 ~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~l~~   91 (298)
                      ++|.|+|.+|+..    .++.++|+.|.++|++|+|.+||+|.. . ..+||||||.|.+.......|++.++|+|+|+|
T Consensus         1 ~~~~~~i~~~~~~----~~~~~~S~~f~~~g~~W~l~~~p~~~~-~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~   74 (126)
T cd00121           1 GKHTWKIVNFSEL----EGESIYSPPFEVGGYKWRIRIYPNGDG-E-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN   74 (126)
T ss_pred             CEEEEEECCCCCC----CCcEEECCCEEEcCEeEEEEEEcCCCC-C-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence            4799999999982    268999999999999999999999986 2 678999999998876545679999999999999


Q ss_pred             CCCC-eeEEEecCCeeeeC-CCCCCccccceeeccccc-cc-eeCCEEEEEEEEE
Q 047770           92 KDNE-FLAHRAEGPIRRFD-HNKHEWGFGKFLSLDTLH-EY-LANDTLVLGAEVF  142 (298)
Q Consensus        92 ~~~~-~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~l~-~~-l~dd~l~i~~~i~  142 (298)
                      +++. .....   ..+.|. ....+|||.+||++++|+ .+ +.||+|+|+|+|.
T Consensus        75 ~~~~~~~~~~---~~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~  126 (126)
T cd00121          75 QNGGKSLSKS---FTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK  126 (126)
T ss_pred             CCCCccceEe---ccCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence            9833 33332   223442 456899999999999999 44 9999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.84  E-value=1.7e-20  Score=142.31  Aligned_cols=116  Identities=31%  Similarity=0.648  Sum_probs=95.6

Q ss_pred             ECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCC-CCCeEEEEEEEEEEeCCCCe
Q 047770           18 LNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCS-DNWSVHVNYKLFVLYKDNEF   96 (298)
Q Consensus        18 I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~~~~f~~~l~~~~~~~   96 (298)
                      |+|||++..  .+..+.|+.|.++|++|+|.+||+|+     .++||+||.|....... ..|++.+++++.+++++++.
T Consensus         1 i~nfs~l~~--~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~   73 (119)
T PF00917_consen    1 IKNFSKLKE--GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS   73 (119)
T ss_dssp             ETTGGGHHT--SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred             CcccceEeC--CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence            789999972  23344558999999999999999975     67999999999886543 68999999999999998885


Q ss_pred             eEEEecCCeeeeCCCCCCccccceeeccccc--cceeCCEEEEEEEEEE
Q 047770           97 LAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFV  143 (298)
Q Consensus        97 ~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i  143 (298)
                      .....  ..+.|+. ..+|||.+||++++|.  .|+.||+|+|+|+|+|
T Consensus        74 ~~~~~--~~~~F~~-~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   74 ISKRI--KSHSFNN-PSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEEEE--ECEEECT-TSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred             ceeee--eeeEEee-ecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence            33322  2578975 4899999999999999  4799999999999986

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.84  E-value=7.1e-21  Score=144.37  Aligned_cols=113  Identities=28%  Similarity=0.462  Sum_probs=93.0

Q ss_pred             eCCcccCCC--CCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEEEEEecCCCCCcc
Q 047770          169 IPKFSALDD--NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFDLLLVDQKRHSNS  244 (298)
Q Consensus       169 i~~fs~l~~--~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~~~l~~~~~~~~~  244 (298)
                      |+|||++..  ..+.|+.+.++|++|+|.+||+|+    ++++++||+|..+ +...  +|++.++++++|+++  .+..
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~-~~~~~~~w~~~~~~~~~~~~~--~~~~   73 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKG-ENDSDLEWSIEAEFRFRLLNQ--NGKS   73 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECS-TTGGGSSSSEEEEEEEEEE-T--TSCE
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeec-ccccccceeeeEEEEEEEecC--CCCc
Confidence            689999873  334558899999999999999986    5699999999987 5543  899999999999999  3333


Q ss_pred             eeeee-eeccccccccccccceeeccccccC-cccCCEEEEEEEEEE
Q 047770          245 FKRQY-SKWFSAQCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLS  289 (298)
Q Consensus       245 ~~~~~-~~~F~~~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i  289 (298)
                      ..... .+.|... .+|||.+||+|++|+++ |++||+|+|+|+|+|
T Consensus        74 ~~~~~~~~~F~~~-~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   74 ISKRIKSHSFNNP-SSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEEEEECEEECTT-SEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred             ceeeeeeeEEeee-cccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence            33333 4788764 57999999999999999 799999999999987

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.80  E-value=3.3e-19  Score=139.21  Aligned_cols=131  Identities=20%  Similarity=0.410  Sum_probs=100.6

Q ss_pred             CcEEEEEECCcccccC-CCCcceEEcCcEEeC-CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeE-EEEEE
Q 047770           11 PAHYTVELNSYSKLFR-PEKLEIFESGLFEAG-NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSV-HVNYK   86 (298)
Q Consensus        11 ~~~~~w~I~nfs~~~~-~~~~~~~~S~~f~~~-g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~-~~~f~   86 (298)
                      ++.+.|+|.||+++.+ ..++..++||+|... ||+.+|++||||+...+.+.|||||+++++++.+ .++|++ .-+.+
T Consensus         1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it   80 (167)
T cd03783           1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI   80 (167)
T ss_pred             CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence            4578999999999764 235678999999874 9999999999998633567799999999998764 678995 56899


Q ss_pred             EEEEeCCCC---ee-E---EEecC--C------eeeeCC--------------CCCCccccceeeccccc--cceeCCEE
Q 047770           87 LFVLYKDNE---FL-A---HRAEG--P------IRRFDH--------------NKHEWGFGKFLSLDTLH--EYLANDTL  135 (298)
Q Consensus        87 ~~l~~~~~~---~~-~---~~~~~--~------~~~F~~--------------~~~~~G~~~fi~~~~l~--~~l~dd~l  135 (298)
                      |+|+||++.   .. .   .....  .      ...|+.              .+.++||..||+++.|.  +||+||+|
T Consensus        81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtl  160 (167)
T cd03783          81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDL  160 (167)
T ss_pred             EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeE
Confidence            999999752   11 0   11100  0      011332              24589999999999998  99999999


Q ss_pred             EEEEEE
Q 047770          136 VLGAEV  141 (298)
Q Consensus       136 ~i~~~i  141 (298)
                      .|.+++
T Consensus       161 fI~~~~  166 (167)
T cd03783         161 IIFVDF  166 (167)
T ss_pred             EEEEec
Confidence            999876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.80  E-value=3.9e-19  Score=137.93  Aligned_cols=129  Identities=14%  Similarity=0.313  Sum_probs=101.0

Q ss_pred             CcEEEEEECCcccccC-CCCcceEEcCcEEe-CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEE-EEEE
Q 047770           11 PAHYTVELNSYSKLFR-PEKLEIFESGLFEA-GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVH-VNYK   86 (298)
Q Consensus        11 ~~~~~w~I~nfs~~~~-~~~~~~~~S~~f~~-~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~-~~f~   86 (298)
                      ++.+.|+|.||+++.+ .+++..++||+|.. .||+.++++||||.+ . +.+|||||+++++++.+ .++||+. -+.+
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g-~-~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit   78 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTD-D-YPGNLAIYLHLTSGPNDDQLQWPCPWQQAT   78 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCC-C-CCCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence            4679999999999865 45678899999965 699999999999997 3 36799999999998764 6789999 8999


Q ss_pred             EEEEeCCCC----ee-EE--EecC---Ce--eee--CC----------C-------CCCccccceeeccccc--cceeCC
Q 047770           87 LFVLYKDNE----FL-AH--RAEG---PI--RRF--DH----------N-------KHEWGFGKFLSLDTLH--EYLAND  133 (298)
Q Consensus        87 ~~l~~~~~~----~~-~~--~~~~---~~--~~F--~~----------~-------~~~~G~~~fi~~~~l~--~~l~dd  133 (298)
                      |+|+||++.    .+ ..  ..+.   ..  ..|  +.          .       +.++||..||++++|.  .||+||
T Consensus        79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD  158 (167)
T cd03782          79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGD  158 (167)
T ss_pred             EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCC
Confidence            999999752    11 11  1100   01  124  21          1       4689999999999998  999999


Q ss_pred             EEEEEEEE
Q 047770          134 TLVLGAEV  141 (298)
Q Consensus       134 ~l~i~~~i  141 (298)
                      +|.|-+++
T Consensus       159 ~ifi~~~~  166 (167)
T cd03782         159 DVIFLLTM  166 (167)
T ss_pred             eEEEEEec
Confidence            99998775

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.78  E-value=8.8e-19  Score=136.83  Aligned_cols=124  Identities=19%  Similarity=0.313  Sum_probs=98.0

Q ss_pred             eeEEEeCCcccCCC-----CCcccceeee-CCeeEEEEEeeCCCCC-CCCCeEEEEEEeccCCCCCC--CCeE-EEEEEE
Q 047770          164 TRTWKIPKFSALDD-----NPRFSQAYTV-DERKWKLRLYPMGTAA-GKGEFLALHLMLVDVLDPAP--KRAV-FAEFDL  233 (298)
Q Consensus       164 ~~~w~i~~fs~l~~-----~~~~S~~f~~-~g~~w~i~~yp~G~~~-~~~~~lsv~L~~~~~~~~~~--~~~~-~~~f~~  233 (298)
                      .++|+|+||+++.+     ..++||.|.. .|++.+|++||+|+.. +.+.|+|||++++++ +.++  +|++ .-+++|
T Consensus         3 ~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~G-e~D~~L~WP~~~~~itl   81 (167)
T cd03783           3 NAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSG-ENDAVLEWPALNRQAII   81 (167)
T ss_pred             ceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecc-cCCCcccCCCcCCEEEE
Confidence            78999999998652     4689999977 5999999999999864 568899999999999 7777  9995 679999


Q ss_pred             EEecCCC---CCcceeeee-------------eeccccc--------------cccccccceeeccccccC-cccCCEEE
Q 047770          234 LLVDQKR---HSNSFKRQY-------------SKWFSAQ--------------CYVLGHRKFISLTDLYQS-DVVGDTLI  282 (298)
Q Consensus       234 ~l~~~~~---~~~~~~~~~-------------~~~F~~~--------------~~~~G~~~fi~~~~L~~~-fl~~D~l~  282 (298)
                      .|+||..   ...++..+.             ...|+++              +.++||+.||++++|+.+ ||+||+|.
T Consensus        82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtlf  161 (167)
T cd03783          82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDLI  161 (167)
T ss_pred             EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeEE
Confidence            9999931   111221110             1125443              348999999999999998 99999999


Q ss_pred             EEEEEE
Q 047770          283 IELQFL  288 (298)
Q Consensus       283 i~~~v~  288 (298)
                      |.++++
T Consensus       162 I~~~~~  167 (167)
T cd03783         162 IFVDFE  167 (167)
T ss_pred             EEEecC
Confidence            998863

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.78  E-value=1.1e-18  Score=135.36  Aligned_cols=123  Identities=21%  Similarity=0.256  Sum_probs=98.5

Q ss_pred             eeEEEeCCcccCCC-----CCcccceeee-CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEE-EEEEEE
Q 047770          164 TRTWKIPKFSALDD-----NPRFSQAYTV-DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVF-AEFDLL  234 (298)
Q Consensus       164 ~~~w~i~~fs~l~~-----~~~~S~~f~~-~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~-~~f~~~  234 (298)
                      .++|+|+||+++..     ..++||.|.. .||+.++++||||.+.+ +.|||||++++++ +.++  +|++. -+++|.
T Consensus         3 ~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~G-e~D~~L~WPf~~~qit~~   80 (167)
T cd03782           3 EHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSG-PNDDQLQWPCPWQQATMM   80 (167)
T ss_pred             cEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEecc-CCCccccCCCcCCeEEEE
Confidence            78999999998652     4688887754 79999999999999875 6799999999999 7777  99998 899999


Q ss_pred             EecCCC---CCcceee--eee--------ecc--ccc-----------------cccccccceeeccccccC-cccCCEE
Q 047770          235 LVDQKR---HSNSFKR--QYS--------KWF--SAQ-----------------CYVLGHRKFISLTDLYQS-DVVGDTL  281 (298)
Q Consensus       235 l~~~~~---~~~~~~~--~~~--------~~F--~~~-----------------~~~~G~~~fi~~~~L~~~-fl~~D~l  281 (298)
                      |+||..   ...|+..  +..        ..|  .++                 +.++|++.||++++|+.+ ||+||++
T Consensus        81 LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD~i  160 (167)
T cd03782          81 LLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGDDV  160 (167)
T ss_pred             EEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCCeE
Confidence            999931   1124333  111        134  332                 568999999999999998 9999999


Q ss_pred             EEEEEEE
Q 047770          282 IIELQFL  288 (298)
Q Consensus       282 ~i~~~v~  288 (298)
                      .|-++++
T Consensus       161 fi~~~~e  167 (167)
T cd03782         161 IFLLTME  167 (167)
T ss_pred             EEEEecC
Confidence            9988763

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>smart00061 MATH meprin and TRAF homology

Probab=99.74  E-value=4.5e-17  Score=118.28  Aligned_cols=94  Identities=28%  Similarity=0.516  Sum_probs=79.4

Q ss_pred             EEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEEEEeCC
Q 047770           14 YTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKD   93 (298)
Q Consensus        14 ~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~l~~~~   93 (298)
                      ++|.|+||+.+.   .++.++|++|.++|++|+|.+||+       .+|||+||.|.+....+..|++.|+|+++|+|++
T Consensus         2 ~~~~~~~~~~~~---~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~   71 (95)
T smart00061        2 LSHTFKNVSRLE---EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN   71 (95)
T ss_pred             ceeEEEchhhcc---cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence            579999999884   278999999999999999999998       4699999999887655558999999999999998


Q ss_pred             CCeeEEEecCCeeeeCCCCCCcccccee
Q 047770           94 NEFLAHRAEGPIRRFDHNKHEWGFGKFL  121 (298)
Q Consensus        94 ~~~~~~~~~~~~~~F~~~~~~~G~~~fi  121 (298)
                      ++....   ...+.|.. ..+|||.+||
T Consensus        72 ~~~~~~---~~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       72 GKSLSK---KDKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             CCEEee---eeeEEEcC-CCccceeeEC
Confidence            874422   25688986 6889999886

>smart00061 MATH meprin and TRAF homology

Probab=99.70  E-value=1e-16  Score=116.30  Aligned_cols=92  Identities=27%  Similarity=0.369  Sum_probs=77.4

Q ss_pred             eEEEeCCcccCC-CCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC-CCeEEEEEEEEEecCCCCC
Q 047770          165 RTWKIPKFSALD-DNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP-KRAVFAEFDLLLVDQKRHS  242 (298)
Q Consensus       165 ~~w~i~~fs~l~-~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~-~~~~~~~f~~~l~~~~~~~  242 (298)
                      ++|.|++|+.+. ++.+.|+.|.++|++|+|.+||+      ++|+|+||.|.+. ...+ +|++.|+|+|+|+||  ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~-~~~~~~w~v~a~~~~~l~~~--~~   72 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKE-ECDSRKWSIEAEFTLKLVSQ--NG   72 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCC-cCCCCCeEEEEEEEEEEEeC--CC
Confidence            579999999985 47899999999999999999998      4599999999876 5554 899999999999999  44


Q ss_pred             cceeeeeeecccccccccccccee
Q 047770          243 NSFKRQYSKWFSAQCYVLGHRKFI  266 (298)
Q Consensus       243 ~~~~~~~~~~F~~~~~~~G~~~fi  266 (298)
                      +...+...+.|.. ..+|||.+||
T Consensus        73 ~~~~~~~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       73 KSLSKKDKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             CEEeeeeeEEEcC-CCccceeeEC
Confidence            4445556788876 6789999886

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=4.4e-14  Score=130.77  Aligned_cols=131  Identities=22%  Similarity=0.445  Sum_probs=106.2

Q ss_pred             ccCCCcEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC--C-CCCCeEEE
Q 047770            7 RNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT--C-SDNWSVHV   83 (298)
Q Consensus         7 ~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~--~-~~~w~~~~   83 (298)
                      -+.....++|+|++|+.+.     ...+||+|.+||+.|+|.++|+|+.+    ...||||.......  . ...|.|+|
T Consensus        34 Ee~~~~sftW~vk~wsel~-----~k~~Sp~F~vg~~twki~lfPqG~nq----~~~sVyLe~~pqe~e~~~gk~~~cca  104 (1089)
T COG5077          34 EELLEMSFTWKVKRWSELA-----KKVESPPFSVGGHTWKIILFPQGNNQ----CNVSVYLEYEPQELEETGGKYYDCCA  104 (1089)
T ss_pred             HHHhhcccceecCChhhhh-----hhccCCcccccCeeEEEEEecccCCc----cccEEEEEeccchhhhhcCcchhhhh
Confidence            3455678999999999995     47899999999999999999999872    22999999875431  1 23499999


Q ss_pred             EEEEEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc-------cceeCCEEEEEEEEEEEecC
Q 047770           84 NYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH-------EYLANDTLVLGAEVFVIVST  147 (298)
Q Consensus        84 ~f~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~-------~~l~dd~l~i~~~i~i~~~~  147 (298)
                      +|.|.|-|+..+..... ...-|+|+....+||+..|+.+..|.       .|+.+|++.|++.|+|++.+
T Consensus       105 qFaf~Is~p~~pti~~i-N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP  174 (1089)
T COG5077         105 QFAFDISNPKYPTIEYI-NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP  174 (1089)
T ss_pred             heeeecCCCCCCchhhh-hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence            99999999877621111 12558999888999999999998886       68999999999999999885

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=2e-13  Score=126.50  Aligned_cols=128  Identities=20%  Similarity=0.326  Sum_probs=105.6

Q ss_pred             ceeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCC-C--CCCCCeEEEEEEEEEecCC
Q 047770          163 TTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVL-D--PAPKRAVFAEFDLLLVDQK  239 (298)
Q Consensus       163 ~~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~-~--~~~~~~~~~~f~~~l~~~~  239 (298)
                      ..++|+|++++.+. +...||.|.+||+.|+|.++|.|+...   -+||||.....+ +  ....|.|+|+|.|.|-|+ 
T Consensus        39 ~sftW~vk~wsel~-~k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p-  113 (1089)
T COG5077          39 MSFTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDISNP-  113 (1089)
T ss_pred             cccceecCChhhhh-hhccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecCCC-
Confidence            58999999999987 478999999999999999999998542   289999986541 1  111599999999999999 


Q ss_pred             CCCc-ceeeeeeeccccccccccccceeeccccccC------cccCCEEEEEEEEEEEEE-eee
Q 047770          240 RHSN-SFKRQYSKWFSAQCYVLGHRKFISLTDLYQS------DVVGDTLIIELQFLSVSA-VRL  295 (298)
Q Consensus       240 ~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~------fl~~D~l~i~~~v~i~~~-~~~  295 (298)
                      +.+. ....+..|+|.....+|||.+|+.+..|..+      |+.+|++.|.+.|.|.+. ||.
T Consensus       114 ~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGV  177 (1089)
T COG5077         114 KYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGV  177 (1089)
T ss_pred             CCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccc
Confidence            4432 4455677999888889999999999988763      999999999999999987 554

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.00  E-value=2e-10  Score=100.99  Aligned_cols=255  Identities=23%  Similarity=0.342  Sum_probs=168.2

Q ss_pred             EEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEEEEeCC
Q 047770           14 YTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKD   93 (298)
Q Consensus        14 ~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~l~~~~   93 (298)
                      +.|.+.+++...     ..++|..|..+|..|++.+||.|+       ++|.|+.+....    +|.+.+.+.|.++|+.
T Consensus         6 ~~~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~   69 (297)
T KOG1987|consen    6 FTWVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQK   69 (297)
T ss_pred             cceeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCC----CcceeEEEEEEEccCC
Confidence            338899988773     678999999999999999999864       789999988653    6999999999999998


Q ss_pred             CC-e-eEEEecCCeeee--CCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEecCCceeeeEe--------ee
Q 047770           94 NE-F-LAHRAEGPIRRF--DHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIVSTGRKECVSI--------LK  157 (298)
Q Consensus        94 ~~-~-~~~~~~~~~~~F--~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~~~~~~~~~~~--------i~  157 (298)
                      .. + ...+.  ....|  ......||+..+++...+.    ||+.++.+.+-+...|++...+.+....        ..
T Consensus        70 ~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~  147 (297)
T KOG1987|consen   70 SEKYLSTVEE--GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEE  147 (297)
T ss_pred             Ccceeeeeee--eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecccccchhcccccccccc
Confidence            76 3 44311  22333  3335789998888887776    9999988888887777777654432211        22


Q ss_pred             cCCC----CceeEEEeCCcccCCC----CCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC---CCe
Q 047770          158 NPDG----ATTRTWKIPKFSALDD----NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP---KRA  226 (298)
Q Consensus       158 ~p~~----~~~~~w~i~~fs~l~~----~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~---~~~  226 (298)
                      .++.    . .|+|.+.+++....    ....+..|..++..|++.++|.|.+..+...++.+|+.... ....   .-.
T Consensus       148 ~~~~~~~~~-~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~-~~~~~~~~~~  225 (297)
T KOG1987|consen  148 KPEVLEALN-GFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASN-YDLKEAKSAL  225 (297)
T ss_pred             chhhHhhhc-eEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhch-hHHHHHHHHH
Confidence            3444    5 99999999998763    26677889999999999999998766556678888876652 1111   222


Q ss_pred             EEEEEEEEEecCCCCC--cce--eeeeeeccccccccccccceeeccccccC---cccCCEEEEEEEEEEE
Q 047770          227 VFAEFDLLLVDQKRHS--NSF--KRQYSKWFSAQCYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSV  290 (298)
Q Consensus       227 ~~~~f~~~l~~~~~~~--~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~  290 (298)
                      +.+......+|+ ...  ++.  .+............+ ..++.++.++...   +++++++.+++...++
T Consensus       226 ~~~~~~~~~ld~-l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  294 (297)
T KOG1987|consen  226 TYVIAAGFKLDW-LEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPL  294 (297)
T ss_pred             HHHHhccchHhH-HHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCc
Confidence            334444445666 332  121  111111111111112 3345555444333   6667777777765543

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.96  E-value=8.8e-05  Score=65.22  Aligned_cols=119  Identities=25%  Similarity=0.410  Sum_probs=89.6

Q ss_pred             eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEecCCCCCc
Q 047770          164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSN  243 (298)
Q Consensus       164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~  243 (298)
                      ++.|.+.+++... ..++|..+..++..|++.+||.|+      +++.|+.+... .   +|.+.+++.+.+.|+ ...+
T Consensus         5 ~~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~---~~~~~~~~~l~v~n~-~~~~   72 (297)
T KOG1987|consen    5 KFTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDS-P---GWERYAKLRLTVVNQ-KSEK   72 (297)
T ss_pred             ccceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccC-C---CcceeEEEEEEEccC-CCcc
Confidence            4457888888765 667888899999999999999875      79999988764 2   599999999999999 4443


Q ss_pred             c-eee-eeeeccccc--cccccccceeeccccccC---cccCCEEEEEEEEEEEEEee
Q 047770          244 S-FKR-QYSKWFSAQ--CYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSVSAVR  294 (298)
Q Consensus       244 ~-~~~-~~~~~F~~~--~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~~~~~  294 (298)
                      . ... .....|...  ...||+...++...+.+.   |+.++.+++-+.+.|.+..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~  130 (297)
T KOG1987|consen   73 YLSTVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG  130 (297)
T ss_pred             eeeeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence            3 322 234444333  357999888888777664   88888888888877776544

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=2.1e-05  Score=80.27  Aligned_cols=126  Identities=13%  Similarity=0.061  Sum_probs=101.5

Q ss_pred             eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEecCCCCCc
Q 047770          164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSN  243 (298)
Q Consensus       164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~  243 (298)
                      ..+|...+...+.. ...++.|..++.+|++.+.|++..   ...+++|+.+... ...+.|.+++++.+.++|...+..
T Consensus        28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~s~~~~~~~~v~~~~~~~~  102 (1093)
T KOG1863|consen   28 STTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPS-QSLKSWSCGAQAVLRVKNTIDNLP  102 (1093)
T ss_pred             cccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccC-CCCcceEecchhhhccccCCCCch
Confidence            34455555555443 677889999999999999999873   4579999999876 444569999999999999412333


Q ss_pred             ceeeeeeeccccccccccccceeeccccccC---cccCCEEEEEEEEEEEEEee
Q 047770          244 SFKRQYSKWFSAQCYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSVSAVR  294 (298)
Q Consensus       244 ~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~~~~~  294 (298)
                      +..+...|.|.....+||+..|+.++++.++   |+.+|++.++++|.+..-++
T Consensus       103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~  156 (1093)
T KOG1863|consen  103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTS  156 (1093)
T ss_pred             hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCc
Confidence            5667788999888889999999999999887   99999999999999976554

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=4.5e-05  Score=77.90  Aligned_cols=124  Identities=21%  Similarity=0.262  Sum_probs=97.9

Q ss_pred             EEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEEEEeCC
Q 047770           14 YTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKD   93 (298)
Q Consensus        14 ~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~l~~~~   93 (298)
                      ..|...+.....     ....||.|..++.+|++.+.|+++.    ...+++|+.+...... ..|.+.+++.+.+.|..
T Consensus        29 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~   98 (1093)
T KOG1863|consen   29 TTIDGIDDKSLL-----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTI   98 (1093)
T ss_pred             ccccCcCcchhh-----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhccccCC
Confidence            335555544443     3678999999999999999999874    5679999999988765 45999999999999943


Q ss_pred             CCeeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEecCC
Q 047770           94 NEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIVSTG  148 (298)
Q Consensus        94 ~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~~~~  148 (298)
                      ++..... ....|.|.....+||+.+|+.+.++.    +|+.+|++.+++.|.+.....
T Consensus        99 ~~~~~~~-~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~  156 (1093)
T KOG1863|consen   99 DNLPDPE-KAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTS  156 (1093)
T ss_pred             CCchhhh-hhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCc
Confidence            3321111 13678999888999999999999887    999999999999999876654

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.17  E-value=0.00027  Score=64.27  Aligned_cols=85  Identities=18%  Similarity=0.165  Sum_probs=70.9

Q ss_pred             ccCCCcEEEEEECCcccccC---CCCcceEEcCcEEe--CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCe
Q 047770            7 RNSPPAHYTVELNSYSKLFR---PEKLEIFESGLFEA--GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWS   80 (298)
Q Consensus         7 ~~~~~~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~--~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~   80 (298)
                      ...-.|+..|+|.+++..+.   .+.+..++|++|..  .||..+.++|-||+. .+.+.++|+|+.++.+..+ ...|+
T Consensus       275 ~~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wp  353 (391)
T KOG0297|consen  275 VRSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWP  353 (391)
T ss_pred             hhccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccC
Confidence            34457899999999965543   34467899999975  699999999999997 5667899999999998764 56799


Q ss_pred             EEEEEEEEEEeC
Q 047770           81 VHVNYKLFVLYK   92 (298)
Q Consensus        81 ~~~~f~~~l~~~   92 (298)
                      .+-+.++.+++|
T Consensus       354 f~~~v~~~l~dq  365 (391)
T KOG0297|consen  354 FRQKVTLMLLDQ  365 (391)
T ss_pred             CCCceEEEEecc
Confidence            999999999999

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.65  E-value=0.0013  Score=59.82  Aligned_cols=75  Identities=28%  Similarity=0.423  Sum_probs=65.5

Q ss_pred             ceeEEEeCCcccCC-------CCCcccceeee--CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEE
Q 047770          163 TTRTWKIPKFSALD-------DNPRFSQAYTV--DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEF  231 (298)
Q Consensus       163 ~~~~w~i~~fs~l~-------~~~~~S~~f~~--~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f  231 (298)
                      ....|+|.+++..+       ...+.|+.|..  .|++.+.++|-+|++.+.+.++|+|+...++ +.++  .|++.-+.
T Consensus       280 g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~g-e~d~~l~wpf~~~v  358 (391)
T KOG0297|consen  280 GTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRG-EYDALLPWPFRQKV  358 (391)
T ss_pred             CEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeeccc-CcccccccCCCCce
Confidence            38899999996543       24677887765  7999999999999998889999999999999 7777  99999999


Q ss_pred             EEEEecC
Q 047770          232 DLLLVDQ  238 (298)
Q Consensus       232 ~~~l~~~  238 (298)
                      ++.+++|
T Consensus       359 ~~~l~dq  365 (391)
T KOG0297|consen  359 TLMLLDQ  365 (391)
T ss_pred             EEEEecc
Confidence            9999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	4e-28
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	1e-19
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	2e-21
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	2e-16
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	1e-14
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	5e-09
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	6e-14
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	2e-10
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	1e-11
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	4e-07
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	2e-11
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	6e-10
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	4e-11
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	3e-10
1d00_A	168	Tumor necrosis factor receptor associated protein	7e-11
1d00_A	168	Tumor necrosis factor receptor associated protein	2e-10
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	1e-10
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	1e-10

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  105 bits (263), Expect = 4e-28
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 11/148 (7%)

Query: 5   EIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYIS 64
           +      A +   +  +S+L          S      N  W+++  P           + 
Sbjct: 12  DTSWRSEATFQFTVERFSRLSESVL-----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVG 66

Query: 65  LYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLD 124
            +L+ +  +  S +WS H    L ++   ++  +         F H +++WGF  F++  
Sbjct: 67  FFLQCNAESD-STSWSCHAQAVLKIINYRDDEKSFSRR-ISHLFFHKENDWGFSNFMAWS 124

Query: 125 TLHE----YLANDTLVLGAEVFVIVSTG 148
            + +    ++ +D +     V      G
Sbjct: 125 EVTDPEKGFIDDDKVTFEVFVQADAPHG 152

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 82.6 bits (204), Expect = 1e-19
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 166 TWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGK-GEFLALHLMLVDVLDPAPK 224
            + + +FS L ++   S    V    WK+ + P         + +   L      D    
Sbjct: 22  QFTVERFSRLSES-VLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS-TS 79

Query: 225 RAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVGDTL 281
            +  A+  L +++ +    SF R+ S  F  +    G   F++ +++   +   +  D +
Sbjct: 80  WSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKV 139

Query: 282 IIE 284
             E
Sbjct: 140 TFE 142

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 86.9 bits (215), Expect = 2e-21
 Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 14/139 (10%)

Query: 13  HYTVELNSYSKLFRPEKLEIFESGLFEAG---NYKWRLVFYPNGNKQDDGDGYISLYLKI 69
            Y   +N++S   R E  E+ +S  F +G     KW L   P G  ++  D Y+SLYL +
Sbjct: 12  SYMWTINNFSFC-REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLSLYLLL 69

Query: 70  DGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHE- 128
             C        V   +K  +L    E           RF   K  WGF KF+  D L + 
Sbjct: 70  VSC----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKD-WGFKKFIRRDFLLDE 124

Query: 129 ---YLANDTLVLGAEVFVI 144
               L +D L L  EV V+
Sbjct: 125 ANGLLPDDKLTLFCEVSVV 143

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 73.8 bits (181), Expect = 2e-16
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 166 TWKIPKFSALDDN-------PRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDV 218
            W I  FS   +          FS +   D+ KW LR+ P G      ++L+L+L+L   
Sbjct: 14  MWTINNFSFCREEMGEVIKSSTFS-SGANDKLKWCLRVNPKGLDEESKDYLSLYLLL--- 69

Query: 219 LDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD--- 275
               PK  V A+F   +++ K            +   Q    G +KFI    L       
Sbjct: 70  -VSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGL 128

Query: 276 VVGDTLIIE 284
           +  D L + 
Sbjct: 129 LPDDKLTLF 137

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 14/147 (9%)

Query: 13  HYTVELNSYSKLFRPEKLEIFESGLFEAG---NYKWRLVFYPNGNKQDDGDGYISLYLKI 69
            Y   +N++S   R E  E+ +S  F +G     KW L   P G  ++  D Y+SLYL +
Sbjct: 8   SYMWTINNFSFC-REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLSLYLLL 65

Query: 70  DGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTL--- 126
             C        V   +K  +L    E           RF   K  WGF KF+    L   
Sbjct: 66  VSCP----KSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKD-WGFKKFIRRGFLLDE 120

Query: 127 -HEYLANDTLVLGAEVFVIVSTGRKEC 152
            +  L +D L L  EV V+  +     
Sbjct: 121 ANGLLPDDKLTLFCEVSVVQDSVNISG 147

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 55.3 bits (133), Expect = 5e-09
 Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 15/130 (11%)

Query: 164 TRTWKIPKFSALDDN-------PRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLV 216
           +  W I  FS   +          FS +   D+ KW LR+ P G      ++L+L+L   
Sbjct: 8   SYMWTINNFSFCREEMGEVIKSSTFS-SGANDKLKWCLRVNPKGLDEESKDYLSLYL--- 63

Query: 217 DVLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQ--- 273
            +L   PK  V A+F   +++ K            +   Q    G +KFI    L     
Sbjct: 64  -LLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEAN 122

Query: 274 SDVVGDTLII 283
             +  D L +
Sbjct: 123 GLLPDDKLTL 132

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 67.3 bits (164), Expect = 6e-14
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 19/150 (12%)

Query: 13  HYTVELNSYSKLF---RPEKLEIFESGLFEAGN--YKWRLVFYPNGNKQDDGDGYISLYL 67
            Y  ++ ++         EK  +  S  F  G   YK  +  +           YISL++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 68  KI-DGCNTCSDNWSVHVNYKLFVLYKDNE---------FLAHRAEGPIRR--FDHNKHEW 115
               G       W      +L +L +              A       +R     N   +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 116 GFGKFLSLDTLHE--YLANDTLVLGAEVFV 143
           G+  F+ L+ L +  ++ +DTL++  EV  
Sbjct: 126 GYVTFMHLEALRQRTFIKDDTLLVRCEVST 155

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 30/148 (20%)

Query: 166 TWKIPKFSALDDNPR-------FSQAYTVDER--KWKLRLYPMGTAAGK-GEFLALHLML 215
            WKI  F                S  +   +   K  +RL+     A +   +++L +  
Sbjct: 8   IWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHT 67

Query: 216 VD-VLDPAPKRAVFAEFDLLLVDQ---------------KRHSNSFKRQYSKWFSAQCYV 259
           +    D            L ++DQ               K    +F+R  +   + + + 
Sbjct: 68  MQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRP-TIPRNPKGF- 125

Query: 260 LGHRKFISLTDLYQSD-VVGDTLIIELQ 286
            G+  F+ L  L Q   +  DTL++  +
Sbjct: 126 -GYVTFMHLEALRQRTFIKDDTLLVRCE 152

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 13/146 (8%)

Query: 10  PPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKI 69
             A +   +  +S+L          S      N  W+++  P           +  +L+ 
Sbjct: 29  SEATFQFTVERFSRLSESV-----LSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQC 83

Query: 70  DGCNTCSDNWSVHVNYKLFVLY-KDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHE 128
           +   + S +WS H    L ++  +D+E    R       F H +++WGF  F++   + +
Sbjct: 84  NA-ESDSTSWSCHAQAVLKIINYRDDEKSFSRRIS--HLFFHKENDWGFSNFMAWSEVTD 140

Query: 129 ----YLANDTLVLGAEVFVIVSTGRK 150
               ++ +D +     V      G  
Sbjct: 141 PEKGFIDDDKVTFEVFVQADAPHGVA 166

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 163 TTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKG-EFLALHLMLVDVLDP 221
            T  + + +FS L +    S    V    WK+ + P         + +   L      D 
Sbjct: 31  ATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS 89

Query: 222 APKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---VVG 278
               +  A+  L +++ +    SF R+ S  F  +    G   F++ +++   +   +  
Sbjct: 90  -TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDD 148

Query: 279 DTLIIEL 285
           D +  E+
Sbjct: 149 DKVTFEV 155

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 60.8 bits (147), Expect = 2e-11
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 20/141 (14%)

Query: 166 TWKIPKFSALDDNPR-------FSQAYTVDER--KWKLRLYPMGTAAGKGEFLALHLMLV 216
            WKI  +               +SQ +       K   R+Y  G   GKG  L+L  +++
Sbjct: 43  IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIM 102

Query: 217 D-VLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYV---------LGHRKFI 266
               D         +  L+L+DQ          +    ++  +           G   F+
Sbjct: 103 RGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFV 162

Query: 267 SLTDLYQSD-VVGDTLIIELQ 286
           + T L     +  DT+ I++ 
Sbjct: 163 AQTVLENGTYIKDDTIFIKVI 183

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 56.6 bits (136), Expect = 6e-10
 Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 17/149 (11%)

Query: 9   SPPAHYTVELNSYSKLF---RPEKLEIFESGLFEAGN--YKWRLVFYPNGNKQDDGDGYI 63
           S       ++  Y +        K     S  F  G   YK     Y NG+    G  ++
Sbjct: 37  SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGT-HL 95

Query: 64  SLYLKI-DGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGP--------IRRFDHNKHE 114
           SL+  I  G       W       L ++ + +                   +        
Sbjct: 96  SLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIA 155

Query: 115 WGFGKFLSLDTLH--EYLANDTLVLGAEV 141
            G   F++   L    Y+ +DT+ +   V
Sbjct: 156 SGCPVFVAQTVLENGTYIKDDTIFIKVIV 184

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 60.5 bits (146), Expect = 4e-11
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 20/141 (14%)

Query: 166 TWKIPKFSALDDNPR-------FSQAYTVDER--KWKLRLYPMGTAAGKGEFLALHLMLV 216
            WKI  +               +SQ +       K   R+Y  G   GKG  L+L  +++
Sbjct: 79  IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIM 138

Query: 217 D-VLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYV---------LGHRKFI 266
               D         +  L+L+DQ          +    ++  +           G   F+
Sbjct: 139 RGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFV 198

Query: 267 SLTDLYQSD-VVGDTLIIELQ 286
           + T L     +  DT+ I++ 
Sbjct: 199 AQTVLENGTYIKDDTIFIKVI 219

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 58.2 bits (140), Expect = 3e-10
 Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 17/149 (11%)

Query: 9   SPPAHYTVELNSYSKLF---RPEKLEIFESGLFEAGN--YKWRLVFYPNGNKQDDGDGYI 63
           S       ++  Y +        K     S  F  G   YK     Y NG+    G  ++
Sbjct: 73  SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGT-HL 131

Query: 64  SLYLKI-DGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGP--------IRRFDHNKHE 114
           SL+  I  G       W       L ++ + +                   +        
Sbjct: 132 SLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIA 191

Query: 115 WGFGKFLSLDTLH--EYLANDTLVLGAEV 141
            G   F++   L    Y+ +DT+ +   V
Sbjct: 192 SGCPVFVAQTVLENGTYIKDDTIFIKVIV 220

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 58.9 bits (142), Expect = 7e-11
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 20/141 (14%)

Query: 166 TWKIPKFSALDDNPR-------FSQAYTVDER--KWKLRLYPMGTAAGKGEFLALHLMLV 216
            WKI  F+              FS A+       K  LR+Y  G   G+G  L+L  +++
Sbjct: 22  IWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVM 81

Query: 217 D-VLDPAPKRAVFAEFDLLLVDQ---KRHSNSFK-----RQYSKWFSAQCYVLGHRKFIS 267
               D   +     +  L+L+DQ   +   ++F+       + +  +      G   F  
Sbjct: 82  KGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCP 141

Query: 268 LTDLYQSD--VVGDTLIIELQ 286
           ++ +   +  V  D + I+  
Sbjct: 142 VSKMEAKNSYVRDDAIFIKAI 162

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 9   SPPAHYTVELNSYSKLF---RPEKLEIFESGLFEAGN--YKWRLVFYPNGNKQDDGDGYI 63
           +    +  +++ +++        ++    S  F      YK  L  Y NG+    G  ++
Sbjct: 16  TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGT-HL 74

Query: 64  SLYLKI-DGCNTCSDNWSVHVNYKLFVLYKDNE---FLAHRAEGPIRRFDHNKHE----W 115
           SL+  +  G N     W  +    L +L ++N      A R +     F    ++     
Sbjct: 75  SLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIAS 134

Query: 116 GFGKFLSLDTLHE---YLANDTLVLGAEV 141
           G   F  +  +     Y+ +D + + A V
Sbjct: 135 GCPLFCPVSKMEAKNSYVRDDAIFIKAIV 163

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 58.9 bits (142), Expect = 1e-10
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 20/141 (14%)

Query: 166 TWKIPKFSALDDNPR-------FSQAYTVDER--KWKLRLYPMGTAAGKGEFLALHLMLV 216
            WKI  F+              FS A+       K  LR+Y  G   G+G  L+L  +++
Sbjct: 46  IWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVM 105

Query: 217 D-VLDPAPKRAVFAEFDLLLVDQ---KRHSNSFK-----RQYSKWFSAQCYVLGHRKFIS 267
               D   +     +  L+L+DQ   +   ++F+       + +  +      G   F  
Sbjct: 106 KGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCP 165

Query: 268 LTDLYQSD--VVGDTLIIELQ 286
           ++ +   +  V  D + I+  
Sbjct: 166 VSKMEAKNSYVRDDAIFIKAI 186

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 58.9 bits (142), Expect = 1e-10
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 9   SPPAHYTVELNSYSKLF---RPEKLEIFESGLFEAGN--YKWRLVFYPNGNKQDDGDGYI 63
           +    +  +++ +++        ++    S  F      YK  L  Y NG+    G  ++
Sbjct: 40  TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGT-HL 98

Query: 64  SLYLKI-DGCNTCSDNWSVHVNYKLFVLYKDNE---FLAHRAEGPIRRFDHNKHE----W 115
           SL+  +  G N     W  +    L +L ++N      A R +     F    ++     
Sbjct: 99  SLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIAS 158

Query: 116 GFGKFLSLDTLH---EYLANDTLVLGAEV 141
           G   F  +  +     Y+ +D + + A V
Sbjct: 159 GCPLFCPVSKMEAKNSYVRDDAIFIKAIV 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.96
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.96
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.96
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.95
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.95
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.95
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.94
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.94
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.93
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.93
1d00_A	168	Tumor necrosis factor receptor associated protein	99.93
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.93
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.92
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.92
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.92
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.92
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.92
1d00_A	168	Tumor necrosis factor receptor associated protein	99.92
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.9
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.89
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.88
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.88
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.5
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.49

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.96  E-value=1.2e-29  Score=198.52  Aligned_cols=136  Identities=29%  Similarity=0.450  Sum_probs=114.6

Q ss_pred             cccccCCCcEEEEEECCcccccCCCCcceEEcCcEEeCCe---eEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCe
Q 047770            4 REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNY---KWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWS   80 (298)
Q Consensus         4 ~~~~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~---~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~   80 (298)
                      ..|.++..++|+|+|+|||.+++ +.++.++||+|.+|||   +|+|++||+|+. .++.+||||||.|.+.    +.|+
T Consensus         3 ~~m~~~~~~~~~w~I~~fs~~~~-~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~----~~w~   76 (145)
T 3ivv_A            3 GGSGKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSC----PKSE   76 (145)
T ss_dssp             --CCCCCEEEEEEEESSGGGCCC-CTTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEEC----SSSE
T ss_pred             CCCCcEEEEEEEEEEcCchHHhh-cCCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCC----CCCc
Confidence            56788999999999999999873 5578999999999996   999999999987 3567899999999876    3599


Q ss_pred             EEEEEEEEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeecccc--c--cceeCCEEEEEEEEEEEec
Q 047770           81 VHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTL--H--EYLANDTLVLGAEVFVIVS  146 (298)
Q Consensus        81 ~~~~f~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l--~--~~l~dd~l~i~~~i~i~~~  146 (298)
                      +.|+|+|+|+||+++..........++|.. ..+|||.+||++++|  .  +||+||+|+|+|+|+|+++
T Consensus        77 v~a~f~l~llnq~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           77 VRAKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EEEEEEEEEECTTSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEEEEEEEEEecCCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            999999999999887433222235688974 589999999999999  3  9999999999999999863

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.96  E-value=3.5e-29  Score=198.09  Aligned_cols=132  Identities=17%  Similarity=0.238  Sum_probs=110.4

Q ss_pred             CCCceeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCC-CCCCeEEEEEEeccCCCCCC-CCeEEEEEEEEEec
Q 047770          160 DGATTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAA-GKGEFLALHLMLVDVLDPAP-KRAVFAEFDLLLVD  237 (298)
Q Consensus       160 ~~~~~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~-~~~~~lsv~L~~~~~~~~~~-~~~~~~~f~~~l~~  237 (298)
                      +.+ +|+|+|+|||.++ +.++|+.|.++|++|+|++||+|+.. +.++||||||+|...  ..+ .|++.|+|+|+|+|
T Consensus        17 ~~~-~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~--~~~~~w~v~a~~~l~l~~   92 (155)
T 2foj_A           17 SEA-TFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE--SDSTSWSCHAQAVLKIIN   92 (155)
T ss_dssp             SEE-EEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT--CCCSSCEEEEEEEEEECC
T ss_pred             CCc-EEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC--CCCCCCEEEEEEEEEEEc
Confidence            445 9999999999995 78999999999999999999999764 357899999999643  334 79999999999999


Q ss_pred             CCCCCc-ceeeeeeeccccccccccccceeecccccc---CcccCCEEEEEEEEEEEEEeeee
Q 047770          238 QKRHSN-SFKRQYSKWFSAQCYVLGHRKFISLTDLYQ---SDVVGDTLIIELQFLSVSAVRLL  296 (298)
Q Consensus       238 ~~~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~---~fl~~D~l~i~~~v~i~~~~~~~  296 (298)
                      | .+.. +..+...+.|.....+|||++||+|++|++   .||+||+|+|+|+|+|.+++|++
T Consensus        93 ~-~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~  154 (155)
T 2foj_A           93 Y-RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA  154 (155)
T ss_dssp             S-SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred             C-CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence            9 4443 566677788987667899999999999963   39999999999999999999974

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.96  E-value=3e-28  Score=192.74  Aligned_cols=133  Identities=17%  Similarity=0.345  Sum_probs=108.4

Q ss_pred             CCCcEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEE
Q 047770            9 SPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLF   88 (298)
Q Consensus         9 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~   88 (298)
                      ...++|+|+|+|||.++     +.++|++|.+||++|+|++||+|+..++..+||||||.|... ..+..|++.|+|+|.
T Consensus        16 ~~~~~~~w~I~nfS~~~-----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~   89 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS-----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLK   89 (155)
T ss_dssp             CSEEEEEEEESSGGGCC-----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEE
T ss_pred             CCCcEEEEEECChhhcC-----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEE
Confidence            56799999999999984     689999999999999999999997621357899999999654 346679999999999


Q ss_pred             EEeCCCCeeEEEecCCeeeeCCCCCCccccceeecccc---c-cceeCCEEEEEEEEEEEecCC
Q 047770           89 VLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTL---H-EYLANDTLVLGAEVFVIVSTG  148 (298)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l---~-~~l~dd~l~i~~~i~i~~~~~  148 (298)
                      |+||+++...... ...+.|.....+|||.+||++++|   . +||+||+|+|+|+|+|.++++
T Consensus        90 l~~~~~~~~~~~~-~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG  152 (155)
T 2foj_A           90 IINYRDDEKSFSR-RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG  152 (155)
T ss_dssp             ECCSSCGGGCEEE-EEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBS
T ss_pred             EEcCCCCcceEEe-ccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccc
Confidence            9999887322111 256789766789999999999999   4 999999999999999966554

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.95  E-value=1.6e-28  Score=200.86  Aligned_cols=140  Identities=17%  Similarity=0.163  Sum_probs=112.7

Q ss_pred             ccCCCcEEEEEECCcccccC---CCCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCe
Q 047770            7 RNSPPAHYTVELNSYSKLFR---PEKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWS   80 (298)
Q Consensus         7 ~~~~~~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~   80 (298)
                      ..+..|+|.|+|+|||.++.   .+.++.++|++|.+|  ||+|+|++||||+. .+..+||||||.+.+++.+ ...|+
T Consensus        35 ~~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~wp  113 (198)
T 4ghu_A           35 TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWP  113 (198)
T ss_dssp             TCCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSS
T ss_pred             ccccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCCce
Confidence            45778999999999999875   456789999999999  99999999999987 4567899999999876543 45799


Q ss_pred             EEEEEEEEEEeCCCCe-eEEE---ecCCeeee----CCCCCCccccceeeccccc--cceeCCEEEEEEEEEEEecC
Q 047770           81 VHVNYKLFVLYKDNEF-LAHR---AEGPIRRF----DHNKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFVIVST  147 (298)
Q Consensus        81 ~~~~f~~~l~~~~~~~-~~~~---~~~~~~~F----~~~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i~~~~  147 (298)
                      +.|+|+|.|+||.++. ....   .......|    .....+|||.+||++++|+  +||+||+|+|+|+|+++..+
T Consensus       114 ~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~~  190 (198)
T 4ghu_A          114 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLP  190 (198)
T ss_dssp             CCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTBEEEEEEECCTTCC
T ss_pred             EEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhhcCCeeCCEEEEEEEEEeccCC
Confidence            9999999999998652 2111   00111223    3345689999999999998  99999999999999887654

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.95  E-value=3.8e-28  Score=196.17  Aligned_cols=139  Identities=19%  Similarity=0.203  Sum_probs=112.1

Q ss_pred             cccCCCcEEEEEECCcccccC---CCCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCC
Q 047770            6 IRNSPPAHYTVELNSYSKLFR---PEKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNW   79 (298)
Q Consensus         6 ~~~~~~~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w   79 (298)
                      ...+..|+|+|+|+|||.++.   .+.+..++|++|.+|  ||+|+|++||+|+. .+..+||||||.|.++.. ....|
T Consensus        18 ~~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~l~W   96 (178)
T 4gjh_A           18 EGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQW   96 (178)
T ss_dssp             HHCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGGGSCS
T ss_pred             cCcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCcccCC
Confidence            356889999999999999874   344558999999999  99999999999987 445789999999987653 24579


Q ss_pred             eEEEEEEEEEEeCCCCee-EEE---ecCCeeeeCC----CCCCccccceeeccccc----cceeCCEEEEEEEEEEEe
Q 047770           80 SVHVNYKLFVLYKDNEFL-AHR---AEGPIRRFDH----NKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIV  145 (298)
Q Consensus        80 ~~~~~f~~~l~~~~~~~~-~~~---~~~~~~~F~~----~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~  145 (298)
                      ++.|+|+|+|+||.++.. ...   .+...+.|+.    ...+|||.+||++++|+    +||+||+|+|+|+|.|.+
T Consensus        97 ~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~  174 (178)
T 4gjh_A           97 PFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD  174 (178)
T ss_dssp             SCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred             ceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence            999999999999987622 111   1123467763    34689999999999997    899999999999997643

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.95  E-value=1.5e-27  Score=189.63  Aligned_cols=138  Identities=19%  Similarity=0.315  Sum_probs=106.7

Q ss_pred             CCCcEEEEEECCcccccC-CCCcc--eEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEE
Q 047770            9 SPPAHYTVELNSYSKLFR-PEKLE--IFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVH   82 (298)
Q Consensus         9 ~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~   82 (298)
                      +..|+|+|+|+|||.++. .+.|+  .++|++|.+|  ||+|+|++||||++.+...+||||||.++++..+ ..+|+++
T Consensus         2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~   81 (160)
T 1lb6_A            2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (160)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence            467999999999999864 34456  8999999999  9999999999998622247899999999876543 4579999


Q ss_pred             EEEEEEEEeCCCCee--E----EEecCCeeeeCC-----CCCCccccceeeccccc--cceeCCEEEEEEEEEEEec
Q 047770           83 VNYKLFVLYKDNEFL--A----HRAEGPIRRFDH-----NKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFVIVS  146 (298)
Q Consensus        83 ~~f~~~l~~~~~~~~--~----~~~~~~~~~F~~-----~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i~~~  146 (298)
                      |+|+|.|+||.++..  .    .........|..     ...+|||.+||++++|+  +||+||+|+|+|+|+|+.+
T Consensus        82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEEC---
T ss_pred             eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhhCCCccCCEEEEEEEEEEeec
Confidence            999999999986521  1    111112234542     12379999999999998  8999999999999998764

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.94  E-value=7.2e-27  Score=205.60  Aligned_cols=175  Identities=24%  Similarity=0.371  Sum_probs=132.8

Q ss_pred             cCCCcEEEEEECCcccccCCCCcceEEcCcEEeCCe---eEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEE
Q 047770            8 NSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNY---KWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVN   84 (298)
Q Consensus         8 ~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~---~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~   84 (298)
                      ++.+++|+|+|.|||.++ .+.++.++||+|.+||+   +|+|.+||+|++ +++.+|||+||.|.+++    .|++.|+
T Consensus         3 ~~~~~~~~w~I~nfs~~~-~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~~~v~a~   76 (312)
T 3hqi_A            3 KVVKFSYMWTINNFSFCR-EEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAK   76 (312)
T ss_dssp             EEEEEEEEEEETTGGGCC-CCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEE
T ss_pred             ceEEEEEEEEEcCcchhh-hcCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----CCcEEEE
Confidence            456789999999999997 55688999999999995   999999999987 45678999999998754    5999999


Q ss_pred             EEEEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEecCCcee---eeEeee
Q 047770           85 YKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIVSTGRKE---CVSILK  157 (298)
Q Consensus        85 f~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~~~~~~~---~~~~i~  157 (298)
                      |+|+|+||+++..........++|.. ..+|||.+||++++|+    +||+||+|+|+|+|+|++...+.+   ....+.
T Consensus        77 ~~~~l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~  155 (312)
T 3hqi_A           77 FKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVK  155 (312)
T ss_dssp             EEEEEECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCC
T ss_pred             EEEEEEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccccccC
Confidence            99999999987433322236688985 4689999999999995    799999999999999997653221   123355


Q ss_pred             cCCCCceeEEEeCCcccCC-CCCcccceeeeCCeeEEE
Q 047770          158 NPDGATTRTWKIPKFSALD-DNPRFSQAYTVDERKWKL  194 (298)
Q Consensus       158 ~p~~~~~~~w~i~~fs~l~-~~~~~S~~f~~~g~~w~i  194 (298)
                      +|++.     ...++..+. .+...+.++.++|..+..
T Consensus       156 ~p~~~-----l~~~l~~l~~~~~~~Dv~l~v~~~~f~~  188 (312)
T 3hqi_A          156 VPECR-----LADELGGLWENSRFTDCCLCVAGQEFQA  188 (312)
T ss_dssp             CCCCC-----HHHHHHHHHHTTCSCCEEEEETTEEEEE
T ss_pred             CCCch-----HHHHHHHHHhCCCCCceEEEECCEEEeH
Confidence            66655     445555544 355667788888876543

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.94  E-value=1.1e-26  Score=181.73  Aligned_cols=122  Identities=25%  Similarity=0.384  Sum_probs=103.0

Q ss_pred             eeEEEeCCcccCC---CCCcccceeeeCCe---eEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEec
Q 047770          164 TRTWKIPKFSALD---DNPRFSQAYTVDER---KWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD  237 (298)
Q Consensus       164 ~~~w~i~~fs~l~---~~~~~S~~f~~~g~---~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~  237 (298)
                      +|+|+|.|||.++   ++.+.|+.|.++|+   +|+|++||+|+..+.++|+|+||+|.+.    +.|++.|+|+|+|+|
T Consensus        12 ~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~l~lln   87 (145)
T 3ivv_A           12 SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSILN   87 (145)
T ss_dssp             EEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEEEEEEC
T ss_pred             EEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEEEEEEe
Confidence            8999999999987   36899999999986   9999999999876667899999999864    369999999999999


Q ss_pred             CCCCCcce--eeeeeeccccccccccccceeecccccc--C-cccCCEEEEEEEEEEEE
Q 047770          238 QKRHSNSF--KRQYSKWFSAQCYVLGHRKFISLTDLYQ--S-DVVGDTLIIELQFLSVS  291 (298)
Q Consensus       238 ~~~~~~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~--~-fl~~D~l~i~~~v~i~~  291 (298)
                      | .+.++.  .....+.|.. ..+|||++||++++|++  . ||+||+|+|+|+|+|++
T Consensus        88 q-~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~  144 (145)
T 3ivv_A           88 A-KGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  144 (145)
T ss_dssp             T-TSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred             c-CCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEe
Confidence            9 444332  2234577864 56899999999999953  3 99999999999999975

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.93  E-value=4.1e-27  Score=192.52  Aligned_cols=135  Identities=16%  Similarity=0.216  Sum_probs=108.7

Q ss_pred             CCCcEEEEEECCcccccC-CCCcc--eEEcCcEEe--CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCC-CCCeEE
Q 047770            9 SPPAHYTVELNSYSKLFR-PEKLE--IFESGLFEA--GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCS-DNWSVH   82 (298)
Q Consensus         9 ~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~f~~--~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~~   82 (298)
                      ...++|+|+|+|||.++. .+.|+  .++||+|.+  |||+|+|++||+|++ .+..+||||||.+.++..++ ..|++.
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~W~~~  118 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN  118 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCCCceE
Confidence            678999999999999874 23344  699999999  999999999999987 34678999999998876544 689999


Q ss_pred             EEEEEEEEeCCCCeeEEEe---cCCeeeeC----CCCCCccccceeeccccc---cceeCCEEEEEEEEEEE
Q 047770           83 VNYKLFVLYKDNEFLAHRA---EGPIRRFD----HNKHEWGFGKFLSLDTLH---EYLANDTLVLGAEVFVI  144 (298)
Q Consensus        83 ~~f~~~l~~~~~~~~~~~~---~~~~~~F~----~~~~~~G~~~fi~~~~l~---~~l~dd~l~i~~~i~i~  144 (298)
                      |+|+|.|+||+++......   +.....|.    ....+|||.+||++++|+   +||+||+|+|+|+|+|.
T Consensus       119 a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~V~  190 (192)
T 1ca9_A          119 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT  190 (192)
T ss_dssp             CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHSSCSSCBTTEEEEEEEECCT
T ss_pred             EEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhhccCCEeCCEEEEEEEEEec
Confidence            9999999999887221111   11223464    124689999999999996   89999999999999874

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.93  E-value=2.3e-27  Score=193.67  Aligned_cols=135  Identities=17%  Similarity=0.186  Sum_probs=108.9

Q ss_pred             CCCcEEEEEECCcccccC-CCCcc--eEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEE
Q 047770            9 SPPAHYTVELNSYSKLFR-PEKLE--IFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVH   82 (298)
Q Consensus         9 ~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~   82 (298)
                      ...++|.|+|.|||.++. .+.|+  .++|++|.+|  ||+|+|++||||++ .+..+||||||.++++..+ ..+|++.
T Consensus        37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~wp~~  115 (192)
T 2gkw_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK  115 (192)
T ss_dssp             CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCCCcEE
Confidence            478999999999999873 33455  6999999999  99999999999987 3567899999999876543 4579999


Q ss_pred             EEEEEEEEeCCCCee-EE---EecCCeeeeCC----CCCCccccceeeccccc--cceeCCEEEEEEEEEEE
Q 047770           83 VNYKLFVLYKDNEFL-AH---RAEGPIRRFDH----NKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFVI  144 (298)
Q Consensus        83 ~~f~~~l~~~~~~~~-~~---~~~~~~~~F~~----~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i~  144 (298)
                      |+|+|+|+||.++.. ..   ......+.|..    .+.+|||.+||++++|+  +||+||+|+|+|+|.+.
T Consensus       116 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~~gyl~dD~l~I~~~V~v~  187 (192)
T 2gkw_A          116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTS  187 (192)
T ss_dssp             CCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTEEEEEEEECCT
T ss_pred             EEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCcCCCeeCCEEEEEEEEEcC
Confidence            999999999987722 11   11112356753    23689999999999998  99999999999999764

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.93  E-value=3.7e-27  Score=188.95  Aligned_cols=136  Identities=16%  Similarity=0.212  Sum_probs=108.4

Q ss_pred             cCCCcEEEEEECCcccccCC-CCcc--eEEcCcEE--eCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCC-CCCeE
Q 047770            8 NSPPAHYTVELNSYSKLFRP-EKLE--IFESGLFE--AGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCS-DNWSV   81 (298)
Q Consensus         8 ~~~~~~~~w~I~nfs~~~~~-~~~~--~~~S~~f~--~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~   81 (298)
                      ....++|+|+|+|||.++.. ..++  .++||+|.  +|||+|+|++||+|+. .+..+||||||.+.++..++ .+|++
T Consensus        15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~w~~   93 (168)
T 1d00_A           15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPF   93 (168)
T ss_dssp             CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred             cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCCCce
Confidence            45789999999999998742 3344  49999996  7899999999999987 34578999999998865543 68999


Q ss_pred             EEEEEEEEEeCCCCeeEEEe---cCCeeeeCC----CCCCccccceeeccccc---cceeCCEEEEEEEEEEE
Q 047770           82 HVNYKLFVLYKDNEFLAHRA---EGPIRRFDH----NKHEWGFGKFLSLDTLH---EYLANDTLVLGAEVFVI  144 (298)
Q Consensus        82 ~~~f~~~l~~~~~~~~~~~~---~~~~~~F~~----~~~~~G~~~fi~~~~l~---~~l~dd~l~i~~~i~i~  144 (298)
                      .|+|+|+|+||++.......   +...+.|..    ...+|||.+||++++|+   +||+||+|+|+|+|+|.
T Consensus        94 ~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~v~  166 (168)
T 1d00_A           94 NQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT  166 (168)
T ss_dssp             CCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSSSSSSBTTEEEEEEEECCT
T ss_pred             EEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhcccCCceeCCEEEEEEEEEec
Confidence            99999999999886322111   011235642    35789999999999998   79999999999999763

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.93  E-value=1.5e-26  Score=186.77  Aligned_cols=130  Identities=21%  Similarity=0.302  Sum_probs=106.8

Q ss_pred             CCCceeEEEeCCcccCCC-------CCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEE
Q 047770          160 DGATTRTWKIPKFSALDD-------NPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVF  228 (298)
Q Consensus       160 ~~~~~~~w~i~~fs~l~~-------~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~  228 (298)
                      ..+ +|+|+|.|||.+++       ..+.|+.|.++  |++|+|++||+|+..+.++|+|+||+|.++ +.+.  .|++.
T Consensus        22 ~~g-~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~-~~d~~l~W~v~   99 (178)
T 4gjh_A           22 YSG-KLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRG-EFDSLLQWPFR   99 (178)
T ss_dssp             SSS-EEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCC-TTGGGSCSSCC
T ss_pred             cce-EEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecC-CCCcccCCceE
Confidence            355 99999999998752       27999999999  999999999999877667899999999876 4432  79999


Q ss_pred             EEEEEEEecCCCCC-cceeee-----eeecccc----ccccccccceeecccccc--C-cccCCEEEEEEEEEEEEE
Q 047770          229 AEFDLLLVDQKRHS-NSFKRQ-----YSKWFSA----QCYVLGHRKFISLTDLYQ--S-DVVGDTLIIELQFLSVSA  292 (298)
Q Consensus       229 ~~f~~~l~~~~~~~-~~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~--~-fl~~D~l~i~~~v~i~~~  292 (298)
                      ++|+|.|+|| .+. .+...+     ..+.|..    .+.+|||++||++++|++  . ||+||+|+|+|+|+|.++
T Consensus       100 a~~~l~Lldq-~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A          100 QRVTLMLLDQ-SGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             CEEEEEECCT-TSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEEcC-CCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            9999999999 433 344332     3467763    346899999999999997  3 999999999999988654

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.92  E-value=2e-26  Score=188.39  Aligned_cols=129  Identities=20%  Similarity=0.311  Sum_probs=105.8

Q ss_pred             CCCCceeEEEeCCcccCCC-----C--Ccccceeee--CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeE
Q 047770          159 PDGATTRTWKIPKFSALDD-----N--PRFSQAYTV--DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAV  227 (298)
Q Consensus       159 p~~~~~~~w~i~~fs~l~~-----~--~~~S~~f~~--~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~  227 (298)
                      +..+ +|+|+|.|||.+++     +  .++|+.|.+  +|++|+|++||+|++.+.++|+|+||+|.++ +.++  .|++
T Consensus        40 ~~~g-~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~-~~~~~~~W~~  117 (192)
T 1ca9_A           40 TYDG-VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKG-PNDALLRWPF  117 (192)
T ss_dssp             CSSS-EEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECC-TTGGGSCSSC
T ss_pred             ccCc-eEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccC-CCCCcCCCce
Confidence            4456 99999999999763     1  599999999  9999999999999876667899999999887 5543  8999


Q ss_pred             EEEEEEEEecCCCCCcceeeeee-----ecccc----ccccccccceeeccccc-cC-cccCCEEEEEEEEEEE
Q 047770          228 FAEFDLLLVDQKRHSNSFKRQYS-----KWFSA----QCYVLGHRKFISLTDLY-QS-DVVGDTLIIELQFLSV  290 (298)
Q Consensus       228 ~~~f~~~l~~~~~~~~~~~~~~~-----~~F~~----~~~~~G~~~fi~~~~L~-~~-fl~~D~l~i~~~v~i~  290 (298)
                      .++|+|.|+|| .+.++......     ..|..    .+.+|||++||++++|+ +. ||+||+|+|+|+|+|.
T Consensus       118 ~a~~~l~lldq-~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~V~  190 (192)
T 1ca9_A          118 NQKVTLMLLDQ-NNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT  190 (192)
T ss_dssp             CCCEEEEECCT-TSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHSSCSSCBTTEEEEEEEECCT
T ss_pred             EEEEEEEEECC-CCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhhccCCEeCCEEEEEEEEEec
Confidence            99999999999 45445433322     34642    34589999999999998 44 9999999999999885

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.92  E-value=1.1e-26  Score=194.51  Aligned_cols=137  Identities=17%  Similarity=0.158  Sum_probs=109.7

Q ss_pred             cCCCcEEEEEECCcccccC-CCCc--ceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeE
Q 047770            8 NSPPAHYTVELNSYSKLFR-PEKL--EIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSV   81 (298)
Q Consensus         8 ~~~~~~~~w~I~nfs~~~~-~~~~--~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~   81 (298)
                      .+..|+|.|+|.|||.++. .+.|  ..++|++|.+|  ||+|+|++||||++ .+..+||||||.++++..+ ...|++
T Consensus        72 ~~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~Wp~  150 (228)
T 1flk_A           72 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF  150 (228)
T ss_dssp             CCSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSCSSC
T ss_pred             cCcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCCCcE
Confidence            3578999999999999864 2233  48999999999  99999999999987 4567899999999876553 457999


Q ss_pred             EEEEEEEEEeCCCCee-EEE---ecCCeeeeCC----CCCCccccceeeccccc--cceeCCEEEEEEEEEEEe
Q 047770           82 HVNYKLFVLYKDNEFL-AHR---AEGPIRRFDH----NKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFVIV  145 (298)
Q Consensus        82 ~~~f~~~l~~~~~~~~-~~~---~~~~~~~F~~----~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i~~  145 (298)
                      .|+|+|+|+||.+... ...   .+...+.|..    .+.+|||.+||++++|+  +||+||+|+|+|+|.+.+
T Consensus       151 ~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~  224 (228)
T 1flk_A          151 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSD  224 (228)
T ss_dssp             CCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSSSTTCCSSEEEEEEECCCTT
T ss_pred             EEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHccCCCccCCEEEEEEEEEccc
Confidence            9999999999987732 211   1112345642    24689999999999998  999999999999998754

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.92  E-value=5.8e-26  Score=185.75  Aligned_cols=130  Identities=22%  Similarity=0.305  Sum_probs=106.6

Q ss_pred             CCCceeEEEeCCcccCCC-------CCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEE
Q 047770          160 DGATTRTWKIPKFSALDD-------NPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVF  228 (298)
Q Consensus       160 ~~~~~~~w~i~~fs~l~~-------~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~  228 (298)
                      ..+ .|+|+|.|||.+++       +.+.|+.|.++  |++|+|++||+|++.+.++|||+||++.++ +.++  .|++.
T Consensus        38 ~~g-~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g-~~D~~l~wp~~  115 (198)
T 4ghu_A           38 YNG-VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRG-EYDALLPWPFK  115 (198)
T ss_dssp             SSS-EEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECC-TTGGGSCSSCC
T ss_pred             ccc-EEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCC-ccCCCCCceEE
Confidence            355 99999999998753       57999999999  999999999999877678899999999887 5543  89999


Q ss_pred             EEEEEEEecCCCCC-cceeeee-----eecc----ccccccccccceeeccccccC-cccCCEEEEEEEEEEEEE
Q 047770          229 AEFDLLLVDQKRHS-NSFKRQY-----SKWF----SAQCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLSVSA  292 (298)
Q Consensus       229 ~~f~~~l~~~~~~~-~~~~~~~-----~~~F----~~~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i~~~  292 (298)
                      ++|+|.|+|| .+. .+...+.     ...|    ...+.+|||++||++++|++. ||+||+|+|+|+|+|+..
T Consensus       116 a~~~l~Lldq-~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~  189 (198)
T 4ghu_A          116 QKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDL  189 (198)
T ss_dssp             CCEEEEECCC-STTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEEcC-CCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhhcCCeeCCEEEEEEEEEeccC
Confidence            9999999999 433 3443322     1234    334568999999999999977 999999999999998654

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.92  E-value=1.1e-25  Score=178.79  Aligned_cols=127  Identities=17%  Similarity=0.173  Sum_probs=100.3

Q ss_pred             eeEEEeCCcccCCC-----C--CcccceeeeC--CeeEEEEEeeCCCCCC-CCCeEEEEEEeccCCCCCC--CCeEEEEE
Q 047770          164 TRTWKIPKFSALDD-----N--PRFSQAYTVD--ERKWKLRLYPMGTAAG-KGEFLALHLMLVDVLDPAP--KRAVFAEF  231 (298)
Q Consensus       164 ~~~w~i~~fs~l~~-----~--~~~S~~f~~~--g~~w~i~~yp~G~~~~-~~~~lsv~L~~~~~~~~~~--~~~~~~~f  231 (298)
                      +|+|+|+|||.+++     +  .+.|+.|.++  |++|+|++||+|++.+ .++|+|+||++.++ +.++  +|++.++|
T Consensus         6 ~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~-~~d~~l~wp~~a~~   84 (160)
T 1lb6_A            6 IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQG-EYDSHLPWPFQGTI   84 (160)
T ss_dssp             EEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECC-TTGGGSCSSCCSEE
T ss_pred             EEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeec-CCCccCCCceeeeE
Confidence            89999999998752     3  7899999999  9999999999998654 37899999999876 5543  79999999


Q ss_pred             EEEEecCCCCCc---ceeeee-----eeccccc-----cccccccceeeccccccC-cccCCEEEEEEEEEEEEE
Q 047770          232 DLLLVDQKRHSN---SFKRQY-----SKWFSAQ-----CYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLSVSA  292 (298)
Q Consensus       232 ~~~l~~~~~~~~---~~~~~~-----~~~F~~~-----~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i~~~  292 (298)
                      +|.|+|| .+..   +.....     ...|...     ..+|||++||++++|++. ||+||+|+|+|+|+|+..
T Consensus        85 ~l~lldq-~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           85 RLTILDQ-SEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             EEEECCC-SCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEEC---
T ss_pred             EEEEEcC-CCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhhCCCccCCEEEEEEEEEEeec
Confidence            9999999 4321   222221     1235431     237999999999999977 999999999999999754

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.92  E-value=5e-26  Score=185.78  Aligned_cols=128  Identities=21%  Similarity=0.322  Sum_probs=105.9

Q ss_pred             CCceeEEEeCCcccCC-----CC--CcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEE
Q 047770          161 GATTRTWKIPKFSALD-----DN--PRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFA  229 (298)
Q Consensus       161 ~~~~~~w~i~~fs~l~-----~~--~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~  229 (298)
                      .+ +|+|+|.|||.++     ++  .+.|+.|.++  |++|+|++||+|++.+.++|+|+||++.++ +.++  .|++.+
T Consensus        39 ~g-~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~-~~d~~l~wp~~a  116 (192)
T 2gkw_A           39 NG-VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRG-EYDALLPWPFKQ  116 (192)
T ss_dssp             SS-EEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECC-TTGGGSCSSCCC
T ss_pred             Cc-EEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecC-CCCccCCCcEEE
Confidence            45 9999999999976     22  5999999999  999999999999876678899999999877 5544  899999


Q ss_pred             EEEEEEecCCCCC-cceeeeee-----eccccc----cccccccceeeccccccC-cccCCEEEEEEEEEEEE
Q 047770          230 EFDLLLVDQKRHS-NSFKRQYS-----KWFSAQ----CYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLSVS  291 (298)
Q Consensus       230 ~f~~~l~~~~~~~-~~~~~~~~-----~~F~~~----~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i~~  291 (298)
                      +|+|.|+|| .+. +++.....     +.|..+    +.+|||++||++++|++. ||+||+|+|+|+|+|.+
T Consensus       117 ~~~l~lldq-~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~~gyl~dD~l~I~~~V~v~~  188 (192)
T 2gkw_A          117 KVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSD  188 (192)
T ss_dssp             CEEEEECCC-STTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECC-CCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCcCCCeeCCEEEEEEEEEcCC
Confidence            999999999 443 34433322     567543    367999999999999887 99999999999998743

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.92  E-value=6.8e-26  Score=181.56  Aligned_cols=128  Identities=21%  Similarity=0.307  Sum_probs=104.9

Q ss_pred             CCCceeEEEeCCcccCCC-----C--Ccccceee--eCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEE
Q 047770          160 DGATTRTWKIPKFSALDD-----N--PRFSQAYT--VDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVF  228 (298)
Q Consensus       160 ~~~~~~~w~i~~fs~l~~-----~--~~~S~~f~--~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~  228 (298)
                      ..+ +|+|+|.|||.+++     +  .+.|+.|.  ++|++|+|++||+|+..+.++|+|+||+|.++ +.++  +|++.
T Consensus        17 ~~g-~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~-~~~~~~~w~~~   94 (168)
T 1d00_A           17 YDG-VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKG-PNDALLRWPFN   94 (168)
T ss_dssp             SSS-EEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECC-TTGGGSCSSCC
T ss_pred             cCC-EEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecC-CCCccCCCceE
Confidence            345 99999999999762     2  38999995  79999999999999876667899999999886 5553  89999


Q ss_pred             EEEEEEEecCCCCCcceeeee-----eecccc----ccccccccceeeccccccC--cccCCEEEEEEEEEEE
Q 047770          229 AEFDLLLVDQKRHSNSFKRQY-----SKWFSA----QCYVLGHRKFISLTDLYQS--DVVGDTLIIELQFLSV  290 (298)
Q Consensus       229 ~~f~~~l~~~~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~--fl~~D~l~i~~~v~i~  290 (298)
                      ++|+|+|+|| .+.++.....     .+.|..    .+.+|||++||++++|+++  ||+||+|+|+|+|+|.
T Consensus        95 ~~~~l~ll~q-~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~v~  166 (168)
T 1d00_A           95 QKVTLMLLDQ-NNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT  166 (168)
T ss_dssp             CCEEEEECCT-TSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSSSSSSBTTEEEEEEEECCT
T ss_pred             EEEEEEEECC-CCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhcccCCceeCCEEEEEEEEEec
Confidence            9999999999 4544444332     235753    3468999999999999984  9999999999999874

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.90  E-value=9.3e-25  Score=182.83  Aligned_cols=130  Identities=22%  Similarity=0.303  Sum_probs=106.7

Q ss_pred             CCCceeEEEeCCcccCCC-------CCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEE
Q 047770          160 DGATTRTWKIPKFSALDD-------NPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVF  228 (298)
Q Consensus       160 ~~~~~~~w~i~~fs~l~~-------~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~  228 (298)
                      ..+ +|+|+|.|||.++.       ..+.|+.|.++  |++|+|++||+|++.+.++|+|+||++.++ +.++  .|++.
T Consensus        74 ~~g-~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~-~~d~~l~Wp~~  151 (228)
T 1flk_A           74 YNG-VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRG-EYDALLPWPFK  151 (228)
T ss_dssp             SSS-EEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCC-TTTTSSCSSCC
T ss_pred             cCc-EEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecC-CccccCCCcEE
Confidence            355 99999999998752       27999999999  999999999999877678999999999877 5544  89999


Q ss_pred             EEEEEEEecCCCCCc-ceeeee-----eecccc----ccccccccceeeccccccC-cccCCEEEEEEEEEEEEE
Q 047770          229 AEFDLLLVDQKRHSN-SFKRQY-----SKWFSA----QCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLSVSA  292 (298)
Q Consensus       229 ~~f~~~l~~~~~~~~-~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i~~~  292 (298)
                      ++|+|.|+|| .+.+ +.....     .+.|..    .+.+|||++||++++|++. ||+||+|+|+|+|+|.+.
T Consensus       152 a~~~l~lldq-~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~  225 (228)
T 1flk_A          152 QKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDL  225 (228)
T ss_dssp             CCEEEEECCC-SSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSSSTTCCSSEEEEEEECCCTTS
T ss_pred             EEEEEEEEcC-CCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHccCCCccCCEEEEEEEEEcccc
Confidence            9999999999 4433 443321     235652    3458999999999999987 999999999999988653

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.89  E-value=4.1e-23  Score=193.67  Aligned_cols=133  Identities=17%  Similarity=0.318  Sum_probs=106.9

Q ss_pred             ccCCCcEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEE
Q 047770            7 RNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYK   86 (298)
Q Consensus         7 ~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~   86 (298)
                      .....++|+|+|+|||.++     +.++|++|.+||++|+|.+||+|+..+.+.+||||||.+.+. ..+..|.+.|+|+
T Consensus        26 ~~~~~~~~~w~I~nfS~~~-----~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~   99 (522)
T 2f1z_A           26 SWRSEATFQFTVERFSRLS-----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAV   99 (522)
T ss_dssp             CCCSEEEEEEEESSCTTCC-----SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEE
T ss_pred             cccCCcEEEEEECChhhcC-----CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEE
Confidence            3466889999999999986     289999999999999999999997533367899999999877 3577899999999


Q ss_pred             EEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEec
Q 047770           87 LFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIVS  146 (298)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~~  146 (298)
                      |.|+|+.++...... ...++|.....+|||.+||++++|.    +||+||+++|+|+|++..+
T Consensus       100 l~l~n~~~~~~~~~~-~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p  162 (522)
T 2f1z_A          100 LKIINYRDDEKSFSR-RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAP  162 (522)
T ss_dssp             EEECCTTCGGGCEEE-ECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCC
T ss_pred             EEEEcCCCCccceec-cceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccc
Confidence            999999876322221 2568897666889999999999993    9999999999999999644

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.88  E-value=1.1e-22  Score=178.91  Aligned_cols=123  Identities=25%  Similarity=0.367  Sum_probs=99.9

Q ss_pred             eeEEEeCCcccCC---CCCcccceeeeCCe---eEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEec
Q 047770          164 TRTWKIPKFSALD---DNPRFSQAYTVDER---KWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD  237 (298)
Q Consensus       164 ~~~w~i~~fs~l~---~~~~~S~~f~~~g~---~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~  237 (298)
                      +|+|+|+|||.++   ++.+.|+.|.+||+   +|+|++||+|.+...++|+|+||+|...    +.|++.++|+|+|+|
T Consensus         8 ~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~l~~   83 (312)
T 3hqi_A            8 SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSILN   83 (312)
T ss_dssp             EEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEEEEC
T ss_pred             EEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEEEEe
Confidence            8999999999986   47899999999985   9999999999877678899999999865    268999999999999


Q ss_pred             CCCCCcceee--eeeeccccccccccccceeeccccccC---cccCCEEEEEEEEEEEEE
Q 047770          238 QKRHSNSFKR--QYSKWFSAQCYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSVSA  292 (298)
Q Consensus       238 ~~~~~~~~~~--~~~~~F~~~~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~~~  292 (298)
                      | .+......  ...+.|.. +.+|||++||+|++|+++   ||+||+++|+|+|+|++.
T Consensus        84 ~-~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~  141 (312)
T 3hqi_A           84 A-KGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD  141 (312)
T ss_dssp             T-TSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred             C-CCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence            9 44333222  34567865 457999999999999764   999999999999999953

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.88  E-value=1.6e-22  Score=189.71  Aligned_cols=129  Identities=17%  Similarity=0.248  Sum_probs=105.6

Q ss_pred             eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCC-CCCeEEEEEEeccCCCCCCCCeEEEEEEEEEecCCCCC
Q 047770          164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAG-KGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHS  242 (298)
Q Consensus       164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~~~~~~  242 (298)
                      +|+|+|+|||.+++ .+.|++|.+||++|+|.+||+|+... .++|+|+||.|.+. ...++|.+.|+|+|.|+|+ .++
T Consensus        32 ~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~-~~~  108 (522)
T 2f1z_A           32 TFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY-RDD  108 (522)
T ss_dssp             EEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT-TCG
T ss_pred             EEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC-CCC
Confidence            99999999999875 89999999999999999999997543 56899999999875 4334899999999999999 444


Q ss_pred             -cceeeeeeeccccccccccccceeecccccc---CcccCCEEEEEEEEEEEEEeee
Q 047770          243 -NSFKRQYSKWFSAQCYVLGHRKFISLTDLYQ---SDVVGDTLIIELQFLSVSAVRL  295 (298)
Q Consensus       243 -~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~---~fl~~D~l~i~~~v~i~~~~~~  295 (298)
                       .+..+...+.|.....+|||++||+|++|.+   .||+||+++|+|+|+|...+|+
T Consensus       109 ~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~  165 (522)
T 2f1z_A          109 EKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV  165 (522)
T ss_dssp             GGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred             ccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence             3566677788987677899999999999943   2999999999999999765553

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.50  E-value=1.2e-12  Score=122.21  Aligned_cols=126  Identities=15%  Similarity=0.222  Sum_probs=98.2

Q ss_pred             cCCCCceeEEEeCCcccCCC---CCcccceeee-CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeE-EEE
Q 047770          158 NPDGATTRTWKIPKFSALDD---NPRFSQAYTV-DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAV-FAE  230 (298)
Q Consensus       158 ~p~~~~~~~w~i~~fs~l~~---~~~~S~~f~~-~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~-~~~  230 (298)
                      .-+|+ .+.|.|+||+++..   ..++||.|.. .||+++|.+||++     ..++|+|++|..+ +++.  .|++ +-+
T Consensus       402 ~G~CP-~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG-~~D~~L~WP~~~~q  474 (592)
T 4gwm_A          402 ETRCP-HHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISG-ANDDQLQWPCPWQQ  474 (592)
T ss_dssp             SSCCC-SEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECC-TTGGGSCSSCCSEE
T ss_pred             eCCCC-CCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecC-CCCCCccCCCCCCE
Confidence            34688 99999999999873   5788998865 7999999999975     4599999999999 6766  9999 688


Q ss_pred             EEEEEecCCCCCc---ceeeeee-----------eccc-----------------cccccccccceeeccccccC-cccC
Q 047770          231 FDLLLVDQKRHSN---SFKRQYS-----------KWFS-----------------AQCYVLGHRKFISLTDLYQS-DVVG  278 (298)
Q Consensus       231 f~~~l~~~~~~~~---~~~~~~~-----------~~F~-----------------~~~~~~G~~~fi~~~~L~~~-fl~~  278 (298)
                      ++|.|++|..+.+   +..+...           ..|.                 .++.+|||+.||+++.|+++ ||+|
T Consensus       475 ~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~r~fiK~  554 (592)
T 4gwm_A          475 ATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKSRDFIKG  554 (592)
T ss_dssp             EEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTSTTSSBT
T ss_pred             EEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhhcCcccC
Confidence            9999999942221   2222211           1122                 12357999999999999988 9999


Q ss_pred             CEEEEEEEEEEE
Q 047770          279 DTLIIELQFLSV  290 (298)
Q Consensus       279 D~l~i~~~v~i~  290 (298)
                      |+|+|.+.|+-+
T Consensus       555 d~~~i~~~~eD~  566 (592)
T 4gwm_A          555 DDVYILLTVEDI  566 (592)
T ss_dssp             TBEEEEEEEEEC
T ss_pred             CeEEEEEEEEeC
Confidence            999999999754

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.49  E-value=8.3e-14  Score=130.02  Aligned_cols=138  Identities=10%  Similarity=0.185  Sum_probs=106.1

Q ss_pred             cccCCCcEEEEEECCcccccCCCCcceEEcCcEEe-CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCeEE-
Q 047770            6 IRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEA-GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWSVH-   82 (298)
Q Consensus         6 ~~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~-~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~~-   82 (298)
                      +.+..+..+.|+|.||+++.. .++..++||+|.. .||.++|.+||++      ..|+|||++|+++.. ..++||+. 
T Consensus       400 ~t~G~CP~~vw~i~nfs~~l~-~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~  472 (592)
T 4gwm_A          400 LSETRCPHHIWHIRNFTQFIG-SPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPW  472 (592)
T ss_dssp             EESSCCCSEEEEECSCGGGTT-CTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             EeeCCCCCCceeecCHHHhhc-CCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCC
Confidence            467788899999999999974 3467899999975 5999999999864      469999999999755 46889994 


Q ss_pred             EEEEEEEEeCCCCeeE-------EEecC------Ce------------eeeCC-----CCCCccccceeeccccc--cce
Q 047770           83 VNYKLFVLYKDNEFLA-------HRAEG------PI------------RRFDH-----NKHEWGFGKFLSLDTLH--EYL  130 (298)
Q Consensus        83 ~~f~~~l~~~~~~~~~-------~~~~~------~~------------~~F~~-----~~~~~G~~~fi~~~~l~--~~l  130 (298)
                      -+++|+|++|+.....       ...+.      ..            ..|..     .+.+|||..||+++.|.  +||
T Consensus       473 ~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~r~fi  552 (592)
T 4gwm_A          473 QQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKSRDFI  552 (592)
T ss_dssp             EEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTSTTSS
T ss_pred             CEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhhcCcc
Confidence            7899999999866111       11000      00            01111     12358999999999999  999


Q ss_pred             eCCEEEEEEEEEEEecCCce
Q 047770          131 ANDTLVLGAEVFVIVSTGRK  150 (298)
Q Consensus       131 ~dd~l~i~~~i~i~~~~~~~  150 (298)
                      +||+|.|.++|.-+....+.
T Consensus       553 K~d~~~i~~~~eD~~~l~~~  572 (592)
T 4gwm_A          553 KGDDVYILLTVEDISHLNST  572 (592)
T ss_dssp             BTTBEEEEEEEEECGGGSSC
T ss_pred             cCCeEEEEEEEEeCcccccc
Confidence            99999999999988776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	298
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	1e-17
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	2e-13
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	3e-17
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	3e-09
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	6e-16
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	5e-12
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	7e-15
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	8e-12

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 1e-17
 Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 14/141 (9%)

Query: 14  YTVELNSYSKLFRPEKLEIFESGLFEAG---NYKWRLVFYPNGNKQDDGDGYISLYLKID 70
           Y   +N++S        E+ +S  F +G     KW L   P G  ++  D Y+SLYL + 
Sbjct: 7   YMWTINNFSFCREEMG-EVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLSLYLLLV 64

Query: 71  GCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHE-- 128
                     V   +K  +L    E           RF   K  WGF KF+  D L +  
Sbjct: 65  ----SCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKD-WGFKKFIRRDFLLDEA 119

Query: 129 --YLANDTLVLGAEVFVIVST 147
              L +D L L  EV V+  +
Sbjct: 120 NGLLPDDKLTLFCEVSVVQDS 140

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 2e-13
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 166 TWKIPKFSALDDNPR---FSQAYTV---DERKWKLRLYPMGTAAGKGEFLALHLMLVDVL 219
            W I  FS   +       S  ++    D+ KW LR+ P G      ++L+L+L+    L
Sbjct: 8   MWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLL----L 63

Query: 220 DPAPKRAVFAEFDLLLVDQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQSD---V 276
              PK  V A+F   +++ K            +   Q    G +KFI    L       +
Sbjct: 64  VSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLL 123

Query: 277 VGDTLIIE 284
             D L + 
Sbjct: 124 PDDKLTLF 131

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 3e-17
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 19/148 (12%)

Query: 13  HYTVELNSYSKLFR---PEKLEIFESGLFEAGN--YKWRLVFYPNGNKQDDGDGYISLYL 67
            Y  ++ ++    +    EK  +  S  F  G   YK  +  +           YISL++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 68  KI-DGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIR-----------RFDHNKHEW 115
               G       W      +L +L +    +    E  +                N   +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 116 GFGKFLSLDTLHE--YLANDTLVLGAEV 141
           G+  F+ L+ L +  ++ +DTL++  EV
Sbjct: 126 GYVTFMHLEALRQRTFIKDDTLLVRCEV 153

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 3e-09
 Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 24/145 (16%)

Query: 166 TWKIPKFSALDDNPR-------FSQAYTVDER--KWKLRLYPMGTAAGK-GEFLALHLML 215
            WKI  F                S  +   +   K  +RL+     A +   +++L +  
Sbjct: 8   IWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHT 67

Query: 216 VD-VLDPAPKRAVFAEFDLLLVDQKRHSNSFKRQYS------------KWFSAQCYVLGH 262
           +    D            L ++DQ         +                        G+
Sbjct: 68  MQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGY 127

Query: 263 RKFISLTDLYQSD-VVGDTLIIELQ 286
             F+ L  L Q   +  DTL++  +
Sbjct: 128 VTFMHLEALRQRTFIKDDTLLVRCE 152

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 6e-16
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 17/145 (11%)

Query: 13  HYTVELNSYSKLF---RPEKLEIFESGLFEAGN--YKWRLVFYPNGNKQDDGDGYISLYL 67
            +  +++ + +        ++    S  F      YK  L  Y NG+    G  ++SL+ 
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGT-HLSLFF 62

Query: 68  KI-DGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPI-------RRFDHNKHEWGFGK 119
            +  G N     W  +    L +L ++N      A  P        R  +      G   
Sbjct: 63  VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 122

Query: 120 FLSLDTL---HEYLANDTLVLGAEV 141
           F  +  +   + Y+ +D + + A V
Sbjct: 123 FCPVSKMEAKNSYVRDDAIFIKAIV 147

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 5e-12
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 20/139 (14%)

Query: 166 TWKIPKFSALDDNPR-------FSQAYTVDER--KWKLRLYPMGTAAGKGEFLALHLMLV 216
            WKI  F               FS A+       K  LR+Y  G   G+G  L+L  +++
Sbjct: 6   IWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVM 65

Query: 217 D-VLDPAPKRAVFAEFDLLLVDQKR--------HSNSFKRQYSKWFSAQCYVLGHRKFIS 267
               D   +     +  L+L+DQ            +     + +  +      G   F  
Sbjct: 66  KGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCP 125

Query: 268 LTDLYQSD--VVGDTLIIE 284
           ++ +   +  V  D + I+
Sbjct: 126 VSKMEAKNSYVRDDAIFIK 144

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 7e-15
 Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 17/145 (11%)

Query: 13  HYTVELNSYSKLFR---PEKLEIFESGLFEAGN--YKWRLVFYPNGNKQDDGDGYISLYL 67
               ++  Y +  +     K     S  F  G   YK     Y NG+    G  ++SL+ 
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGT-HLSLFF 62

Query: 68  -KIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPI--------RRFDHNKHEWGFG 118
             + G       W       L ++ + +                   +         G  
Sbjct: 63  VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 122

Query: 119 KFLSLDTLHE--YLANDTLVLGAEV 141
            F++   L    Y+ +DT+ +   V
Sbjct: 123 VFVAQTVLENGTYIKDDTIFIKVIV 147

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 8e-12
 Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 20/139 (14%)

Query: 166 TWKIPKFSALDDNPR-------FSQAYTVDER--KWKLRLYPMGTAAGKGEFLALHLMLV 216
            WKI  +               +SQ +       K   R+Y  G   GKG  L+L  +++
Sbjct: 6   IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIM 65

Query: 217 DVL-DPAPKRAVFAEFDLLLVDQKRHSNSFKRQYS---------KWFSAQCYVLGHRKFI 266
               D         +  L+L+DQ          +          K         G   F+
Sbjct: 66  RGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFV 125

Query: 267 SLTDLYQSD-VVGDTLIIE 284
           + T L     +  DT+ I+
Sbjct: 126 AQTVLENGTYIKDDTIFIK 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.94
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.94
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.94
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.93
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.92
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.92
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.92
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.9

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-27  Score=183.16  Aligned_cols=132  Identities=30%  Similarity=0.461  Sum_probs=110.1

Q ss_pred             CCcEEEEEECCcccccCCCCcceEEcCcEEeCCe---eEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEE
Q 047770           10 PPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNY---KWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYK   86 (298)
Q Consensus        10 ~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~---~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~   86 (298)
                      ...+|+|+|+|||.++ ...++.++||.|.++|+   +|+|.+||+|.. ++..+||||||.+.++.    .|++.++|+
T Consensus         3 ~~~~~~W~I~nfs~~~-~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~-~~~~~~lSv~L~~~~~~----~~~v~~~~~   76 (146)
T d2cr2a1           3 VKFSYMWTINNFSFCR-EEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFK   76 (146)
T ss_dssp             EEEEEEEEEETGGGCC-CCSSCCEECCCBCSSSCCSCCBEEEECTTCSS-SSSSSBCCEEEECCCCS----SSEEEEECE
T ss_pred             eEEEEEEEECCchHHh-hcCCCEEECCCEEeCCcCCeEEEEEEEECCCC-CCCCCEEEEEEEeccCC----CceEEEEEE
Confidence            4578999999999887 34578999999998874   899999999987 56778999999998764    499999999


Q ss_pred             EEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEecCC
Q 047770           87 LFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIVSTG  148 (298)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~~~~  148 (298)
                      |.|+|++++..........+.|. ...+|||.+||++++|.    +||+||+|+|+|+|+|+++..
T Consensus        77 ~~l~n~~~~~~~~~~~~~~~~~~-~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~~  141 (146)
T d2cr2a1          77 FSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSV  141 (146)
T ss_dssp             EEEECTTSCEEEEEECSCCEEEE-TTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCSC
T ss_pred             EEEEcCCCCcccceEecceEeCC-CCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCCC
Confidence            99999988744333322334444 46889999999999996    799999999999999998764

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-27  Score=185.79  Aligned_cols=133  Identities=16%  Similarity=0.244  Sum_probs=105.8

Q ss_pred             CcEEEEEECCcccccC---CCCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEEEE
Q 047770           11 PAHYTVELNSYSKLFR---PEKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVHVN   84 (298)
Q Consensus        11 ~~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~   84 (298)
                      .|+|+|+|.|||.+++   .+.++.++||+|.++  ||+|+|++||+|++ +++.+|+||||++.++..+ +..|++.++
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFNQK   80 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCcCcccccceeeE
Confidence            5899999999999864   234668999999998  99999999999987 5668899999999877543 458999999


Q ss_pred             EEEEEEeCCCCeeEE---EecCCeee----eCCCCCCccccceeeccccc---cceeCCEEEEEEEEEEE
Q 047770           85 YKLFVLYKDNEFLAH---RAEGPIRR----FDHNKHEWGFGKFLSLDTLH---EYLANDTLVLGAEVFVI  144 (298)
Q Consensus        85 f~~~l~~~~~~~~~~---~~~~~~~~----F~~~~~~~G~~~fi~~~~l~---~~l~dd~l~i~~~i~i~  144 (298)
                      |+|.|+||.+.....   ........    +.....+|||.+||++++|+   |||+||+|+|+|+|.+.
T Consensus        81 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          81 VTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCCSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhcccCCcEeCCEEEEEEEEEec
Confidence            999999998762221   11111122    23345789999999999996   79999999999999753

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.2e-27  Score=182.94  Aligned_cols=134  Identities=19%  Similarity=0.311  Sum_probs=107.4

Q ss_pred             CCCcEEEEEECCcccccC---CCCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCeEE
Q 047770            9 SPPAHYTVELNSYSKLFR---PEKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWSVH   82 (298)
Q Consensus         9 ~~~~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~~   82 (298)
                      ...|+|.|+|+|||++++   .+++..++||+|.+|  ||+|+|.+||+|...+...+||||||.+.++.. ...+|++.
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~   81 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEE
Confidence            578999999999999864   245678999999998  999999999999874455789999999988754 35689999


Q ss_pred             EEEEEEEEeCCCCeeE---E---EecCC-----eeeeCCCCCCccccceeeccccc--cceeCCEEEEEEEEE
Q 047770           83 VNYKLFVLYKDNEFLA---H---RAEGP-----IRRFDHNKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVF  142 (298)
Q Consensus        83 ~~f~~~l~~~~~~~~~---~---~~~~~-----~~~F~~~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~  142 (298)
                      +.++|.|+||++....   .   .....     .+++.....+|||.+||++++|+  +||+||+|+|+|+|+
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEE
T ss_pred             EEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhccCCCEECCEEEEEEEEE
Confidence            9999999999776111   1   00011     12333345689999999999998  999999999999986

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-26  Score=181.01  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=105.7

Q ss_pred             CcEEEEEECCcccccC---CCCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCeEEEE
Q 047770           11 PAHYTVELNSYSKLFR---PEKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWSVHVN   84 (298)
Q Consensus        11 ~~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~~~~   84 (298)
                      +|+|+|+|.|||.+++   .+.+..++||+|.++  ||+|+|++||+|++ ++..+||||||.+.++.. ....|++.++
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~-~~~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFKQK   80 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTTTTSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEccCCcCcccCCcEEEE
Confidence            5899999999999864   234668999999998  99999999999997 456889999999988754 3567999999


Q ss_pred             EEEEEEeCCCCeeEE----EecCCe----eeeCCCCCCccccceeeccccc--cceeCCEEEEEEEEEE
Q 047770           85 YKLFVLYKDNEFLAH----RAEGPI----RRFDHNKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFV  143 (298)
Q Consensus        85 f~~~l~~~~~~~~~~----~~~~~~----~~F~~~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i  143 (298)
                      |+|.|+||.++....    ......    +.+.....+|||.+||++++|+  |||+||+|+|+|+|.+
T Consensus        81 ~~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~V~~  149 (155)
T d1l0aa1          81 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT  149 (155)
T ss_dssp             EEEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHTTTTCBTTEEEEEEEECC
T ss_pred             EEEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhhhCCCEECCEEEEEEEEEe
Confidence            999999998762211    111111    2233345689999999999998  9999999999999853

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.7e-26  Score=177.13  Aligned_cols=125  Identities=21%  Similarity=0.313  Sum_probs=102.1

Q ss_pred             eeEEEeCCcccCC-------CCCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770          164 TRTWKIPKFSALD-------DNPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD  232 (298)
Q Consensus       164 ~~~w~i~~fs~l~-------~~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~  232 (298)
                      +|+|+|.|||.++       ...+.|+.|.++  |++|+|++||+|...+.++|+||||++.++ +.++  .|++.++|+
T Consensus         4 ~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~-~~d~~~~~~~~~~~~   82 (152)
T d1czya1           4 VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKG-PNDALLRWPFNQKVT   82 (152)
T ss_dssp             EEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECC-TTGGGSCSSCCCCEE
T ss_pred             EEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccC-CcCcccccceeeEEE
Confidence            8999999999874       246899999998  999999999999887778999999999887 5544  899999999


Q ss_pred             EEEecCCCCCcceeeeee-----ecc----ccccccccccceeeccccccC--cccCCEEEEEEEEEEE
Q 047770          233 LLLVDQKRHSNSFKRQYS-----KWF----SAQCYVLGHRKFISLTDLYQS--DVVGDTLIIELQFLSV  290 (298)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~-----~~F----~~~~~~~G~~~fi~~~~L~~~--fl~~D~l~i~~~v~i~  290 (298)
                      |.|+|| .+.++......     ..|    ...+.+|||++||++++|+..  ||+||+|+|+|+|.|.
T Consensus        83 ~~l~d~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          83 LMLLDQ-NNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEECCT-TSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCCSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEcC-CCCccceeeeccccccccccCCCcccccccchhhEEEHHHhcccCCcEeCCEEEEEEEEEec
Confidence            999999 55544322211     222    333568999999999999744  9999999999999764

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=174.14  Aligned_cols=125  Identities=24%  Similarity=0.360  Sum_probs=103.8

Q ss_pred             eeEEEeCCcccCCC---CCcccceeeeCCe---eEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEec
Q 047770          164 TRTWKIPKFSALDD---NPRFSQAYTVDER---KWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD  237 (298)
Q Consensus       164 ~~~w~i~~fs~l~~---~~~~S~~f~~~g~---~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~  237 (298)
                      +|+|+|+||+.+++   +.+.||.|.++|+   +|+|.+||+|.....++|+||||.+...    +.|+++++|+|.|+|
T Consensus         6 ~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~----~~~~v~~~~~~~l~n   81 (146)
T d2cr2a1           6 SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSILN   81 (146)
T ss_dssp             EEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCC----SSSEEEEECEEEEEC
T ss_pred             EEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccC----CCceEEEEEEEEEEc
Confidence            89999999998873   5789999998774   8999999999988788899999999775    268999999999999


Q ss_pred             CCCCCcc-eeeeeeeccccccccccccceeeccccccC---cccCCEEEEEEEEEEEEEe
Q 047770          238 QKRHSNS-FKRQYSKWFSAQCYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSVSAV  293 (298)
Q Consensus       238 ~~~~~~~-~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~~~~  293 (298)
                      + .+... ......+.+...+.+|||++||++++|+++   ||+||+|+|+|+|+|++.+
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          82 A-KGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             T-TSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             C-CCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            9 44432 223333344455678999999999999776   9999999999999998763

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=175.85  Aligned_cols=124  Identities=22%  Similarity=0.300  Sum_probs=101.9

Q ss_pred             eeEEEeCCcccCC-------CCCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770          164 TRTWKIPKFSALD-------DNPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD  232 (298)
Q Consensus       164 ~~~w~i~~fs~l~-------~~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~  232 (298)
                      +|+|+|.|||.+.       ...++|+.|.++  |++|+|++||+|.+++.++|+||||++.++ +.++  .|++.++|+
T Consensus         4 ~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~-~~d~~~~~~~~~~~~   82 (155)
T d1l0aa1           4 VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRG-EYDALLPWPFKQKVT   82 (155)
T ss_dssp             EEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECC-TTTTTSCSSCCCCEE
T ss_pred             EEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccC-CcCcccCCcEEEEEE
Confidence            8999999999874       246889999998  899999999999987778899999999987 5444  899999999


Q ss_pred             EEEecCCCCCc-ceeeee---------eeccccccccccccceeeccccccC-cccCCEEEEEEEEEE
Q 047770          233 LLLVDQKRHSN-SFKRQY---------SKWFSAQCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLS  289 (298)
Q Consensus       233 ~~l~~~~~~~~-~~~~~~---------~~~F~~~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i  289 (298)
                      |.|+|| .++. +.....         .+.+...+.+|||++||++++|++. ||+||+|+|+|+|.+
T Consensus        83 ~~l~~q-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~V~~  149 (155)
T d1l0aa1          83 LMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT  149 (155)
T ss_dssp             EEECCC-SSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHTTTTCBTTEEEEEEEECC
T ss_pred             EEEecC-CCCccceeEEEeeccccccccccccccccCcChhheeEHHHhhhCCCEECCEEEEEEEEEe
Confidence            999999 4443 332222         1223344568999999999999877 999999999999865

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.7e-24  Score=166.68  Aligned_cols=123  Identities=17%  Similarity=0.166  Sum_probs=99.3

Q ss_pred             eeEEEeCCcccCCC-------CCcccceeeeC--CeeEEEEEeeCCCCCC-CCCeEEEEEEeccCCCCCC--CCeEEEEE
Q 047770          164 TRTWKIPKFSALDD-------NPRFSQAYTVD--ERKWKLRLYPMGTAAG-KGEFLALHLMLVDVLDPAP--KRAVFAEF  231 (298)
Q Consensus       164 ~~~w~i~~fs~l~~-------~~~~S~~f~~~--g~~w~i~~yp~G~~~~-~~~~lsv~L~~~~~~~~~~--~~~~~~~f  231 (298)
                      +|+|+|.|||.+++       ..+.||.|.++  |++|+|.+||+|...+ .++|+|+||.+.++ +.+.  +|++.+++
T Consensus         6 ~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~-~~d~~~~~~~~~~~   84 (155)
T d1lb6a_           6 IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQG-EYDSHLPWPFQGTI   84 (155)
T ss_dssp             EEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECC-TTGGGSCSSCCSEE
T ss_pred             EEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecC-cccccCCCcEEEEE
Confidence            89999999998751       35899999998  9999999999997655 46799999999987 5544  89999999


Q ss_pred             EEEEecCCCCCc-ce--eeee----------eeccccccccccccceeeccccccC-cccCCEEEEEEEEE
Q 047770          232 DLLLVDQKRHSN-SF--KRQY----------SKWFSAQCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFL  288 (298)
Q Consensus       232 ~~~l~~~~~~~~-~~--~~~~----------~~~F~~~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~  288 (298)
                      +|.|+|| .+.. +.  ....          .+.+...+.+|||++||++++|++. ||+||+|+|+|+|+
T Consensus        85 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          85 RLTILDQ-SEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             EEEECCC-SCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEE
T ss_pred             EEEEECC-CCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhccCCCEECCEEEEEEEEE
Confidence            9999999 3332 21  1111          1234444568999999999999887 99999999999986